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pyproject.toml
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[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"
[tool.poetry]
name = "functional-connectivity"
version = "0.1.0"
description = "Sensing the functional connectivity of the brain"
authors = ["Tzu-Chi Yen <[email protected]>"]
license = "LGPL-3.0-or-later"
readme = "README.md"
homepage = 'https://github.com/junipertcy/functional-connectivity'
repository = 'https://github.com/junipertcy/functional-connectivity'
documentation = 'https://docs.netscied.tw/functional-connectivity/index.html'
keywords = [
'functional-connectivity',
'convex-optimization',
'graphical-models',
]
classifiers = [
'Development Status :: 4 - Beta',
'Intended Audience :: Science/Research',
'License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)',
'Natural Language :: English',
'Operating System :: Microsoft :: Windows',
'Operating System :: POSIX',
'Operating System :: Unix',
'Operating System :: MacOS',
'Programming Language :: Python :: 3.12',
'Programming Language :: Python :: 3 :: Only',
'Topic :: Scientific/Engineering',
'Topic :: Software Development :: Libraries',
]
[tool.poetry.dependencies]
python = ">=3.12,<3.13"
urllib3 = "^2.2.1"
matplotlib = "^3.9.0"
numpy = "^2.0.1"
scikit-learn = "^1.5.0"
numba = "^0.60.0"
loky = "^3.4.1"
xarray = "^2024.7.0"
jupyterlab = "^4.2.1"
nwbwidgets = "^0.11.3"
dandi = "^0.62.4"
h5py = "^3.11.0"
networkx = "^3.3"
black = "^24.8.0"
ruff = "^0.5.6"
pytest = "^8.3.2"
pre-commit = "^3.8.0"
[tool.poetry.group.dev.dependencies]
pytest = "^8.2.1"
click = "^8.1.7"
sphinx = "^7.2.6"
sphinx_rtd_theme = "^2.0.0"
myst-parser = "^3.0.1"
intersphinx-registry = "^0.2406.4"
numpydoc = "^1.7.0"
sphinx-markdown-tables = "^0.0.17"
recommonmark = "^0.7.1"
mathjax = "^0.1.2"
scalene = "^1.5.42"
mypy = "^1.10.1"
types-six = "^1.16.21"
types-docutils = "^0.21.0.20240423"
pipreqs = "^0.5.0"
[tool.black]
skip-string-normalization = true
line-length = 88
[tool.ruff.lint]
exclude = ["docs/extlinks_fancy.py"]
select = [
"E", # pycodestyle errors
"W", # pycodestyle warnings
"F", # pyflakes
"I", # isort
"C", # flake8-comprehensions
"B", # flake8-bugbear
]
ignore = [
"E501", # line too long, handled by black
"C901", # too complex
"F401",
"F403",
"I001", # isort will take care of this
]
[tool.ruff.lint.isort]
order-by-type = true
relative-imports-order = "closest-to-furthest"
extra-standard-library = ["typing"]
section-order = [
"future",
"standard-library",
"third-party",
"first-party",
"local-folder",
]
known-first-party = []