diff --git a/LICENSE b/LICENSE index 3467534..9d961c4 100644 --- a/LICENSE +++ b/LICENSE @@ -1,2 +1,2 @@ YEAR: 2024 -COPYRIGHT HOLDER: biocmask authors +COPYRIGHT HOLDER: plyxp authors diff --git a/LICENSE.md b/LICENSE.md index 4a220ac..5402d3a 100644 --- a/LICENSE.md +++ b/LICENSE.md @@ -1,6 +1,6 @@ # MIT License -Copyright (c) 2024 biocmask authors +Copyright (c) 2024 plyxp authors Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal diff --git a/NEWS b/NEWS index 4259916..7cba900 100644 --- a/NEWS +++ b/NEWS @@ -2,29 +2,29 @@ * Package renamed to `plyxp` to be more specific about its functionality -## biocmask 0.99.18 +## plyxp 0.99.18 * messages checking for conflicts use `cli::` methods for pretty printing * Vignette typo correction -## biocmask 0.99.13 +## plyxp 0.99.13 * `print.SummarizedExperiment` has been renamed to `show_tidy.SummarizedExperiment` and `show_tidy` is exported as an S3 generic. * Adjust show function display original show method by default. using `show_tidy()` is now opt-in via options or `use_show_tidy()`. * Verbose messages checking if `tidySummarizedExperiment` is already attached or - ever becomes loaded with `biocmask`. + ever becomes loaded with `plyxp`. * change README and Vignette explaining this package provides an alternative approach to `tidySummarizedExperiment` to manipulating `SummarizedExperiment` objects. For now they are exclusive in their functionality, but there may be plans to reconsile conflicts in the future! -## biocmask 0.99.12 +## plyxp 0.99.12 * developer subscribed to bioc-devel mailing list * used `<-` assignment instead of `=` in top-level functions -## biocmask 0.99.11 +## plyxp 0.99.11 Biocondcutor Submission version! diff --git a/R/data.R b/R/data.R index 6fd8e72..25230b2 100644 --- a/R/data.R +++ b/R/data.R @@ -1,4 +1,4 @@ -#' @title Biocmask Simple Example Summarized Experiment +#' @title Plyxp Simple Example Summarized Experiment #' #' @description #' A small data SummarizedExperiment Object of 20 observations, 5 rows and 4 diff --git a/R/biocmask-R6-manager.R b/R/plyxp-R6-manager.R similarity index 100% rename from R/biocmask-R6-manager.R rename to R/plyxp-R6-manager.R diff --git a/R/biocmask-R6.R b/R/plyxp-R6.R similarity index 100% rename from R/biocmask-R6.R rename to R/plyxp-R6.R diff --git a/R/biocmask-quos.R b/R/plyxp-quos.R similarity index 100% rename from R/biocmask-quos.R rename to R/plyxp-quos.R diff --git a/R/biocmask.R b/R/plyxp.R similarity index 99% rename from R/biocmask.R rename to R/plyxp.R index c68d9ae..ce6d41a 100644 --- a/R/biocmask.R +++ b/R/plyxp.R @@ -1,6 +1,6 @@ # @seealso [plyxp::PlyxpMaskManager] -#' @title New Biocmask +#' @title New Plyxp mask #' @name new_plyxp_manager #' @description #' Create a plyxp for an object diff --git a/man/se_simple.Rd b/man/se_simple.Rd index fd81efe..3e24b6d 100644 --- a/man/se_simple.Rd +++ b/man/se_simple.Rd @@ -3,7 +3,7 @@ \docType{data} \name{se_simple} \alias{se_simple} -\title{Biocmask Simple Example Summarized Experiment} +\title{Plyxp Simple Example Summarized Experiment} \format{ \subsection{\code{se_simple}}{ diff --git a/tests/testthat/test_biocmask_R6.R b/tests/testthat/test_plyxp_R6.R similarity index 100% rename from tests/testthat/test_biocmask_R6.R rename to tests/testthat/test_plyxp_R6.R diff --git a/tests/testthat/test_biocmask_manager.R b/tests/testthat/test_plyxp_manager.R similarity index 100% rename from tests/testthat/test_biocmask_manager.R rename to tests/testthat/test_plyxp_manager.R