From 04e1d25416aa4669c3417085db3c6c512620240a Mon Sep 17 00:00:00 2001
From: jtlandis <jtlandis314@gmail.com>
Date: Sat, 4 Jan 2025 01:50:02 -0500
Subject: [PATCH] No idea why there are some diffs in this file. oh well
 :shrug:

---
 README.md | 29 +++++++++++++++--------------
 1 file changed, 15 insertions(+), 14 deletions(-)

diff --git a/README.md b/README.md
index e1be625..50d0106 100644
--- a/README.md
+++ b/README.md
@@ -12,8 +12,8 @@ interface to *SummarizedExperiment*. These two packages can easily be used in
 parallel, by casting objects with the `new_plyxp` constructor to enable
 `plxyp`-driven functionality.
 
-`plyxp` uses 
-[data-masking](https://rlang.r-lib.org/reference/topic-data-mask-programming.html) 
+`plyxp` uses
+[data-masking](https://rlang.r-lib.org/reference/topic-data-mask-programming.html)
 from the `rlang` package in order to connect dplyr functions to
 *SummarizedExperiment* slots in a manner that aims to be intuitive and avoiding
 ambiguity in outcomes.
@@ -24,13 +24,14 @@ out to the package developers, see *Feedback* section below.
 ## installing `plyxp`
 
 ```r
+# plyxp is available on BiocManager version 3.20
 BiocManager::install("plyxp")
 ```
 
 # data masking `SummarizedExperiment`
 
 \
-The `SummarizedExperiment` object contains three main components/"contexts" that we mask, 
+The `SummarizedExperiment` object contains three main components/"contexts" that we mask,
 the `assays()`, `rowData()`[^1] and `colData()`.
 
 [^1]: At this moment `rowRanges()` is not supported in `plyxp` but may become
@@ -39,33 +40,33 @@ its own pronoun in the future.
 ![Simplified view of data masking structure. Figure made with [Biorender](https://biorender.com)](man/figures/Overview-bindings.png)
 
 \
-`plyxp` provides variables as-is to data **within their current contexts** enabling you 
+`plyxp` provides variables as-is to data **within their current contexts** enabling you
 to call S4 methods on S4 objects with `dplyr` verbs. If you require access to
-variables _outside the context_, you may use 
-pronouns made available through `plyxp` to specify where to find those 
+variables _outside the context_, you may use
+pronouns made available through `plyxp` to specify where to find those
 variables.
 
 ![Simplified view of reshaping pronouns. Arrows indicates to where the pronoun provides access. For each pronoun listed, there is an `_asis` variant that returns underlying data without reshaping it to fit the context. Figure made with [Biorender](https://biorender.com)](man/figures/Overview-pronouns.png)
 
 \
 
-The `.assays`, `.rows` and `.cols` pronouns outputs depends on the evaluating 
+The `.assays`, `.rows` and `.cols` pronouns outputs depends on the evaluating
 context. Users should expect that the underlying data returned from `.rows` or
-`.cols` pronouns in the _**assays context**_ is a vector, replicated to match 
+`.cols` pronouns in the _**assays context**_ is a vector, replicated to match
 size of the assay context.
 \
-Alternatively, using a pronoun in either the `rows()` or `cols()` 
+Alternatively, using a pronoun in either the `rows()` or `cols()`
 contexts will likely return a list equal in length to either `nrows(rowData())`
-or `nrows(colData())`.
+or `nrows(colData())` respectively.
 
 # Feedback
 
-We would love to hear your feedback. Please post to 
+We would love to hear your feedback. Please post to
 [Bioconductor support site](https://support.bioconductor.org)
-or the 
+or the
 `#tidiness_in_bioc` Slack channel on community-bioc
-for software usage help, 
-or post an 
+for software usage help,
+or post an
 [Issue on GitHub](https://github.com/jtlandis/plyxp/issues),
 for software development questions.