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Full 16S with DADA2? #1

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miguensblanco opened this issue Jun 15, 2020 · 0 comments
Open

Full 16S with DADA2? #1

miguensblanco opened this issue Jun 15, 2020 · 0 comments

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@miguensblanco
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Hi! Thanks for the repository is really useful, about this particular pipeline I would like to ask a question:

At the input files section of your README, in the Trimming parameters line says "The DADA2 error model adjusts for read quality, and therefore this can be specified as the full length without penalty" That does mean that I could use DADA2 to analyse my full 16S gene run obtained with ONT? I have read before that error rates are too high to correctly infer the noise profile of the reads.

Jesús
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