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environment.yaml
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name: dada2v1.10
channels:
- anaconda
- conda-forge
- bioconda
- defaults
dependencies:
- _r-mutex=1.0.0=anacondar_1
- aioeasywebdav=2.2.0=py36_0
- aiohttp=3.5.4=py36h14c3975_0
- appdirs=1.4.3=py_1
- asn1crypto=0.24.0=py36_1003
- async-timeout=3.0.1=py_1000
- attrs=19.1.0=py_0
- bcrypt=3.1.4=py36h470a237_0
- binutils_impl_linux-64=2.31.1=h6176602_1
- binutils_linux-64=2.31.1=h6176602_7
- bioconductor-biobase=2.42.0=r351h14c3975_1
- bioconductor-biocgenerics=0.28.0=r351_1
- bioconductor-biocparallel=1.16.6=r351h1c2f66e_0
- bioconductor-biomformat=1.10.1=r351_0
- bioconductor-biostrings=2.50.2=r351h14c3975_0
- bioconductor-dada2=1.10.0=r351hf484d3e_0
- bioconductor-delayedarray=0.8.0=r351h14c3975_0
- bioconductor-genomeinfodb=1.18.1=r351_0
- bioconductor-genomeinfodbdata=1.2.1=r351_0
- bioconductor-genefilter=1.64.0
- bioconductor-genomicalignments=1.18.1=r351h14c3975_0
- bioconductor-genomicranges=1.34.0=r351h14c3975_0
- bioconductor-iranges=2.16.0=r351h14c3975_0
- bioconductor-multtest=2.38.0=r351h14c3975_0
- bioconductor-phyloseq=1.26.1=r351_0
- bioconductor-rhdf5=2.26.2=r351hdbcaa40_2
- bioconductor-rhdf5lib=1.4.3=r351h1feb10b_0
- bioconductor-rsamtools=1.34.0=r351hf484d3e_0
- bioconductor-s4vectors=0.20.1=r351h14c3975_0
- bioconductor-shortread=1.40.0=r351hf484d3e_0
- bioconductor-summarizedexperiment=1.12.0=r351_0
- bioconductor-xvector=0.22.0=r351h14c3975_0
- bioconductor-zlibbioc=1.28.0=r351h14c3975_0
- boto3=1.7.84=py_0
- botocore=1.10.84=py_0
- bwidget=1.9.11=1
- bzip2=1.0.6=h14c3975_1002
- ca-certificates=2019.3.9=hecc5488_0
- cachetools=2.1.0=py_0
- cairo=1.16.0=ha4e643d_1000
- certifi=2019.3.9=py36_0
- cffi=1.12.3=py36h8022711_0
- chardet=3.0.4=py36_1003
- cloog=0.18.0=0
- configargparse=0.13.0=py_1
- cryptography=2.6.1=py36h72c5cf5_0
- curl=7.64.1=hf8cf82a_0
- datrie=0.7.1=py36h14c3975_0
- decorator=4.4.0=py_0
- docutils=0.14=py36_1001
- dropbox=7.3.1=py36_0
- expat=2.2.5=hf484d3e_1002
- fastqc=0.11.8
- filechunkio=1.6=py36_0
- fontconfig=2.13.1=he4413a7_1000
- freetype=2.10.0=he983fc9_0
- ftputil=3.2=py36_0
- gcc_impl_linux-64=7.3.0=habb00fd_1
- gcc_linux-64=7.3.0=h553295d_7
- gettext=0.19.8.1=hc5be6a0_1002
- gfortran_impl_linux-64=7.3.0=hdf63c60_1
- gfortran_linux-64=7.3.0=h553295d_7
- gitdb2=2.0.5=py_0
- gitpython=2.1.11=py_0
- glib=2.58.3=hf63aee3_1001
- gmp=6.1.2=hb3b607b_0
- google-api-core=1.11.0=py36_0
- google-auth=1.2.1=py_0
- google-cloud-core=1.0.0=py_0
- google-cloud-storage=1.15.1=py_0
- google-resumable-media=0.3.2=py_0
- googleapis-common-protos=1.5.10=py36_0
- graphite2=1.3.13=hf484d3e_1000
- graphviz=2.40.1=h0dab3d1_0
- gsl=2.4=h294904e_1006
- gxx_impl_linux-64=7.3.0=hdf63c60_1
- gxx_linux-64=7.3.0=h553295d_7
- harfbuzz=2.4.0=h37c48d4_0
- icu=58.2=hf484d3e_1000
- idna=2.8=py36_1000
- idna_ssl=1.1.0=py36_1000
- isl=0.12.2=0
- jinja2=2.10.1=py_0
- jmespath=0.9.4=py_0
- jpeg=9c=h14c3975_1001
- jsonschema=3.0.1=py36_0
- krb5=1.16.3=h05b26f9_1001
- libblas=3.8.0=10_openblas
- libcblas=3.8.0=10_openblas
- libcurl=7.64.1=hda55be3_0
- libedit=3.1.20170329=hf8c457e_1001
- libffi=3.2.1=he1b5a44_1006
- libgcc-ng=8.2.0=hdf63c60_1
- libgfortran-ng=7.3.0=hdf63c60_0
- libiconv=1.15=h516909a_1005
- liblapack=3.8.0=10_openblas
- libpng=1.6.37=hed695b0_0
- libprotobuf=3.7.1=h8b12597_0
- libssh2=1.8.2=h22169c7_2
- libstdcxx-ng=8.2.0=hdf63c60_1
- libtiff=4.0.10=h648cc4a_1001
- libtool=2.4.6=h14c3975_1002
- libuuid=2.32.1=h14c3975_1000
- libxcb=1.13=h14c3975_1002
- libxml2=2.9.9=h13577e0_0
- make=4.2.1=h14c3975_2004
- markupsafe=1.1.1=py36h14c3975_0
- mpc=1.1.0=h10f8cd9_1
- mpfr=4.0.1=hdf1c602_3
- multidict=4.5.2=py36h14c3975_1000
- multiqc=1.6
- ncurses=6.1=hf484d3e_1002
- networkx=2.3=py_0
- numpy=1.16.3=py36he5ce36f_0
- openblas=0.3.6=h6e990d7_2
- openssl=1.1.1b=h14c3975_1
- pandas=0.24.2=py36hf484d3e_0
- pango=1.40.14=h4ea9474_1004
- paramiko=2.4.2=py36_1000
- pcre=8.41=hf484d3e_1003
- pip=19.1=py36_0
- pixman=0.34.0=h14c3975_1003
- prettytable=0.7.2=py_2
- protobuf=3.7.1=py36he1b5a44_0
- psutil=5.6.2=py36h516909a_0
- pthread-stubs=0.4=h14c3975_1001
- pyasn1=0.4.5=py_0
- pyasn1-modules=0.0.5=py36_0
- pycparser=2.19=py36_1
- pygraphviz=1.3.1=py36_0
- pynacl=1.3.0=py36h14c3975_1000
- pyrsistent=0.15.2=py36h516909a_0
- pysftp=0.2.9=py36_0
- python=3.6.7=h381d211_1004
- python-dateutil=2.8.0=py_0
- python-irodsclient=0.7.0=py_0
- pytz=2019.1=py_0
- pyyaml=5.1=py36h14c3975_0
- r-ade4=1.7_13=r351h96ca727_1000
- r-ape=5.3=r351h0357c0b_0
- r-assertthat=0.2.1=r351h6115d3f_0
- r-backports=1.1.4=r351hcdcec82_0
- r-base=3.5.1=h271c98b_1006
- r-bh=1.69.0_1=r351h6115d3f_0
- r-bitops=1.0_6=r351h96ca727_1002
- r-cli=1.1.0=r351h6115d3f_0
- r-cluster=2.0.9=r351h9bbef5b_0
- r-codetools=0.2_16=r351h6115d3f_1000
- r-colorspace=1.4_1=r351hcdcec82_0
- r-crayon=1.3.4=r351h6115d3f_1001
- r-data.table=1.11.6=r351hc070d10_0
- r-digest=0.6.19=r351h0357c0b_0
- r-dplyr=0.8.1
- r-fansi=0.4.0=r351h96ca727_1000
- r-foreach=1.4.4=r351h6115d3f_1001
- r-formatr=1.6=r351h6115d3f_0
- r-futile.logger=1.4.3=r351h6115d3f_1001
- r-futile.options=1.0.1=r351h6115d3f_1000
- r-ggplot2=3.1.1=r351h6115d3f_0
- r-glue=1.3.1=r351hcdcec82_0
- r-gtable=0.3.0=r351h6115d3f_0
- r-hwriter=1.3.2=r351h6115d3f_1001
- r-igraph=1.2.4.1=r351h6786f55_0
- r-iterators=1.0.10=r351h6115d3f_1001
- r-jsonlite=1.6=r351h96ca727_1000
- r-labeling=0.3=r351h6115d3f_1001
- r-lambda.r=1.2.3=r351h6115d3f_1000
- r-lattice=0.20_38=r351h96ca727_1000
- r-latticeextra=0.6_28=r351h6115d3f_1001
- r-lazyeval=0.2.2=r351hcdcec82_0
- r-magrittr=1.5=r351h6115d3f_1001
- r-mass=7.3_51.4=r351hcdcec82_0
- r-matrix=1.2_17=r351hcdcec82_0
- r-matrixstats=0.54.0=r351h96ca727_1000
- r-mgcv=1.8_28=r351hcdcec82_0
- r-munsell=0.5.0=r351h6115d3f_1001
- r-nlme=3.1_140=r351h9bbef5b_0
- r-permute=0.9_5=r351_0
- r-pillar=1.4.0=h6115d3f_0
- r-pkgconfig=2.0.2=r351h6115d3f_1001
- r-plyr=1.8.4=r351h29659fb_1002
- r-r6=2.4.0=r351h6115d3f_0
- r-rcolorbrewer=1.1_2=r351h6115d3f_1001
- r-rcpp=1.0.1=r351h0357c0b_0
- r-rcppparallel=4.4.2=r351h0357c0b_0
- r-rcurl=1.95_4.12=r351hcdcec82_0
- r-readr=1.3.1
- r-reshape2=1.4.3=r351h29659fb_1003
- r-rlang=0.3.4=r351hcdcec82_0
- r-scales=1.0.0=r351h29659fb_1001
- r-snow=0.4_3=r351h6115d3f_1000
- r-stringi=1.4.3=r351h0357c0b_0
- r-stringr=1.4.0=r351h6115d3f_0
- r-survival=2.44_1.1=r351hcdcec82_0
- r-tibble=2.1.1=r351hcdcec82_0
- r-utf8=1.1.4=r351h96ca727_1000
- r-vctrs=0.1.0=r351h96ca727_1000
- r-vegan=2.5_4=r351ha65eedd_0
- r-viridislite=0.3.0=r351h6115d3f_1001
- r-withr=2.1.2=r351h6115d3f_1000
- r-zeallot=0.1.0=r351h6115d3f_1000
- ratelimiter=1.2.0=py36_1000
- readline=7.0=hf8c457e_1001
- requests=2.13.0=py36_0
- rsa=3.1.4=py36_0
- s3transfer=0.1.13=py36_1001
- setuptools=41.0.1=py36_0
- six=1.12.0=py36_1000
- smmap2=2.0.5=py_0
- snakemake=5.4.5=0
- snakemake-minimal=5.4.5=py_0
- sqlite=3.26.0=h67949de_1001
- tk=8.6.9=h84994c4_1001
- tktable=2.10=h14c3975_0
- typing_extensions=3.7.2=py36_1000
- urllib3=1.12=py36_0
- wheel=0.33.4=py36_0
- wrapt=1.11.1=py36h516909a_0
- xmlrunner=1.7.7=py_0
- xorg-kbproto=1.0.7=h14c3975_1002
- xorg-libice=1.0.9=h516909a_1004
- xorg-libsm=1.2.3=h84519dc_1000
- xorg-libx11=1.6.7=h14c3975_1000
- xorg-libxau=1.0.9=h14c3975_0
- xorg-libxdmcp=1.1.3=h516909a_0
- xorg-libxext=1.3.4=h516909a_0
- xorg-libxpm=3.5.12=h14c3975_1002
- xorg-libxrender=0.9.10=h516909a_1002
- xorg-libxt=1.1.5=h14c3975_1002
- xorg-renderproto=0.11.1=h14c3975_1002
- xorg-xextproto=7.3.0=h14c3975_1002
- xorg-xproto=7.0.31=h14c3975_1007
- xz=5.2.4=h14c3975_1001
- yaml=0.1.7=h14c3975_1001
- yarl=1.3.0=py36h14c3975_1000
- zlib=1.2.11=h14c3975_1004