From 30b395b86b87b4b3f7c6b427531cf444934963e9 Mon Sep 17 00:00:00 2001
From: Jose Luis Garrido-Labrador <jlgarrido@ubu.es>
Date: Fri, 21 Jun 2024 14:48:44 +0200
Subject: [PATCH] Update directory tree to SOFTX guide

---
 .github/workflows/docs.yml           | 2 +-
 .github/workflows/python-package.yml | 3 +--
 pytest.ini                           | 1 +
 setup.cfg                            | 9 +++++++++
 src/setup.py => setup.py             | 0
 src/setup.cfg                        | 2 --
 6 files changed, 12 insertions(+), 5 deletions(-)
 create mode 100644 setup.cfg
 rename src/setup.py => setup.py (100%)
 delete mode 100644 src/setup.cfg

diff --git a/.github/workflows/docs.yml b/.github/workflows/docs.yml
index e0a3356..eb7c5aa 100644
--- a/.github/workflows/docs.yml
+++ b/.github/workflows/docs.yml
@@ -26,7 +26,7 @@ jobs:
       # ADJUST THIS: install all dependencies (including pdoc)
       - run: python -m pip install --upgrade pip
       - run: python -m pip install pdoc
-      - run: if [ -f src/requirements.txt ]; then pip install -r src/requirements.txt; fi
+      - run: if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
       - run: python -m pip install scikit-learn==1.2.2
       # ADJUST THIS: build your documentation into docs/.
       # We use a custom build script for pdoc itself, ideally you just run `pdoc -o docs/ ...` here.
diff --git a/.github/workflows/python-package.yml b/.github/workflows/python-package.yml
index 4fe9613..979d055 100644
--- a/.github/workflows/python-package.yml
+++ b/.github/workflows/python-package.yml
@@ -28,7 +28,7 @@ jobs:
       run: |
         python -m pip install --upgrade pip
         python -m pip install flake8 pytest coverage
-        pip install -r src/requirements.txt
+        pip install -r requirements.txt
     - name: Lint with flake8
       run: |
         # stop the build if there are Python syntax errors or undefined names
@@ -37,7 +37,6 @@ jobs:
         flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
     - name: Test with pytest
       run: |
-        cd src
         coverage run -m pytest test
     # Only if ubuntu-latest
     - name: Coverage
diff --git a/pytest.ini b/pytest.ini
index 21cdd60..890e428 100644
--- a/pytest.ini
+++ b/pytest.ini
@@ -9,3 +9,4 @@ filterwarnings =
     ignore:y contains no unlabeled samples
     ignore::FutureWarning
     ignore::DeprecationWarning
+pythonpath = src
diff --git a/setup.cfg b/setup.cfg
new file mode 100644
index 0000000..899010e
--- /dev/null
+++ b/setup.cfg
@@ -0,0 +1,9 @@
+[metadata]
+description_file = README.md
+[options]
+package_dir=
+    =src
+packages=find:
+
+[options.packages.find]
+where=src
diff --git a/src/setup.py b/setup.py
similarity index 100%
rename from src/setup.py
rename to setup.py
diff --git a/src/setup.cfg b/src/setup.cfg
deleted file mode 100644
index 0f94f37..0000000
--- a/src/setup.cfg
+++ /dev/null
@@ -1,2 +0,0 @@
-[metadata]
-description_file = README.md
\ No newline at end of file