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instead of comparing sexes, I am looking at differences between locations.
When I've tried cjs.m2 on my own dataset, I keep receiving this error that does not allow me to continue:
Error in intI(i, n = x@Dim[1], dn[[1]], give.dn = FALSE) :
index larger than maximal 42
How do I address this issue so I can continue analyzing my data. My code is below.
I've been trying to create basic CJS models, before adding more complex covariates from my dataset. I've been using the following link as guidance:
https://jamesepaterson.github.io/jamespatersonblog/2020-04-26_introduction_to_CJS.html
instead of comparing sexes, I am looking at differences between locations.
When I've tried cjs.m2 on my own dataset, I keep receiving this error that does not allow me to continue:
Error in intI(i, n = x@Dim[1], dn[[1]], give.dn = FALSE) :
index larger than maximal 42
How do I address this issue so I can continue analyzing my data. My code is below.
cjs.m1 <- crm(fish)
cjs.m1 <- cjs.hessian(cjs.m1)
cjs.m1
exp(cjs.m1$results$beta$Phi)/(1+exp(cjs.m1$results$beta$Phi))
predict(cjs.m1,
newdata = data.frame(location =c("River1", "River2")),
se = TRUE)
cjs.m1.unequaltime <- crm(fish,
time.intervals = c(1.7, 2.9, 2.5, 6.5, 3.99, 3.4))
predict(cjs.m1.unequaltime)
fish.proc <- process.data(fish,
group = "location")
fish.ddl <- make.design.data(fish.proc)
Phi.dot <- list(formula = ~1) # ~1 is always a constant (or single estimate)
Phi.location <-list (formula = ~location)
p.location <-list(formula = ~location)
cjs.m2 <- crm(fish.proc,
fish.ddl,
model.parameters = list(Phi = Phi.dot,
p = p.location),
accumulate = FALSE)
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