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config_fargene.yaml
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working_folder: /storage/inda/metagenome_short/data/
fastq_folder: /storage/inda/metagenome_short/data/FASTQ/
output_folder: /storage/inda/metagenome_short/data/fargene_output/
model_folder: /home/inda/fargene/fargene_analysis/models/
threads_fargene: 8
class_name:
- class_a
- class_b1_b2
- class_b3
- class_c
- class_d1
- class_d2
- mph
- erm_1
- erm_2
- tet_enzyme
- tet_rpg
- aph2b
- aph3p
- aph6p
- aac2p
- aac3_1
- aac3_2
- aac6p_1
- aac6p_2
- aac6p_3
class_ab:
class_a:
model: class_A
score: 105
out_tisarg: class_a
class_b1_b2:
model: class_B_1_2
score: 127
out_tisarg: class_b1_b2
class_b3:
model: class_B_3
score: 103
out_tisarg: class_b3
class_c:
model: class_C
score: 248
out_tisarg: class_c
class_d1:
model: class_D_1
score: 182
out_tisarg: class_d1
class_d2:
model: class_D_2
score: 234
out_tisarg: class_d1
mph:
model: mph
score: 100
out_tisarg: mph
erm_1:
model: erm_typeA
score: 200
out_tisarg: erm_1
erm_2:
model: erm_typeF
score: 175
out_tisarg: erm_2
tet_enzyme:
model: tet_enzyme
score: 300
out_tisarg: tet_enzyme
tet_rpg:
model: tet_rpg
score: 471
out_tisarg: tet_rpg
aph2b:
model: aminoglycoside_model_g
score: 100
out_tisarg: aph2b
aph3p:
model: aminoglycoside_model_h
score: 100
out_tisarg: aph3p
aph6:
model: aminoglycoside_model_i
score: 100
out_tisarg: aph6
aac2p:
model: aminoglycoside_model_a
score: 100
out_tisarg: aac2p
aac3_1:
model: aminoglycoside_model_b
score: 100
out_tisarg: aac3_class1
aac3_2:
model: aminoglycoside_model_c
score: 100
out_tisarg: aac3_class2
aac6p_1:
model: aminoglycoside_model_d
score: 100
out_tisarg: aac6p_class1
aac6p_2:
model: aminoglycoside_model_e
score: 100
out_tisarg: aac6p_class2
aac6p_3:
model: aminoglycoside_model_f
score: 100
out_tisarg: aac6p_class3