diff --git a/.DS_Store b/.DS_Store new file mode 100644 index 0000000..ae0081a Binary files /dev/null and b/.DS_Store differ diff --git a/.devcontainer/devcontainer.json b/.devcontainer/devcontainer.json new file mode 100644 index 0000000..9fff519 --- /dev/null +++ b/.devcontainer/devcontainer.json @@ -0,0 +1,69 @@ +{ + "name": "vespadb", + "dockerComposeFile": "../docker-compose.yml", + "service": "devcontainer", + "runServices": [ + "devcontainer" + ], + "shutdownAction": "stopCompose", + "workspaceMount": "source=${localWorkspaceFolder},target=/workspaces/vespadb/,type=bind,consistency=delegated", + "workspaceFolder": "/workspaces/vespadb/", + "remoteUser": "root", + "overrideCommand": true, + "initializeCommand": "touch ${localWorkspaceFolder}/.env", + "mounts": [ + "type=bind,source=/var/run/docker.sock,target=/var/run/docker.sock,consistency=consistent" + ], + "customizations": { + "vscode": { + "extensions": [ + "eamodio.gitlens", + "github.copilot", + "ms-azuretools.vscode-docker", + "ms-python.mypy-type-checker", + "ms-python.python", + "henriiik.vscode-ruff", + "charliermarsh.ruff", + "ryanluker.vscode-coverage-gutters", + "tamasfe.even-better-toml", + "visualstudioexptteam.vscodeintellicode", + "GitHub.copilot-chat", + "GitHub.copilot" + ], + "settings": { + "coverage-gutters.coverageFileNames": [ + "reports/coverage.xml" + ], + "editor.codeActionsOnSave": { + "source.fixAll": true, + "source.organizeImports": true + }, + "editor.formatOnSave": true, + "editor.rulers": [ + 100 + ], + "editor.tabSize": 4, + "files.autoSave": "onFocusChange", + "[python]": { + "editor.defaultFormatter": "charliermarsh.ruff" + }, + "[toml]": { + "editor.formatOnSave": false + }, + "mypy-type-checker.importStrategy": "fromEnvironment", + "python.defaultInterpreterPath": "/opt/vespadb-env/bin/python", + "python.terminal.activateEnvironment": false, + "python.testing.pytestEnabled": true, + "remote.containers.copyGitConfig": true, + "ruff.importStrategy": "fromEnvironment", + "ruff.logLevel": "warn", + "terminal.integrated.defaultProfile.linux": "zsh", + "terminal.integrated.profiles.linux": { + "zsh": { + "path": "/usr/bin/zsh" + } + } + } + } + } +} \ No newline at end of file diff --git a/.dockerignore b/.dockerignore new file mode 100644 index 0000000..5dac955 --- /dev/null +++ b/.dockerignore @@ -0,0 +1,7 @@ +# Exclude files and directories from the build context. +# https://docs.docker.com/engine/reference/builder/#dockerignore-file +.mypy_cache/ +.pytest_cache/ +.ruff_cache/ +.git/ +tests/ diff --git a/.github/dependabot.yml b/.github/dependabot.yml new file mode 100644 index 0000000..5361b2c --- /dev/null +++ b/.github/dependabot.yml @@ -0,0 +1,14 @@ +version: 2 + +updates: + - package-ecosystem: github-actions + directory: "/" + schedule: + interval: monthly + - package-ecosystem: pip + directory: "/" + schedule: + interval: monthly + versioning-strategy: lockfile-only + allow: + - dependency-type: "all" diff --git a/.github/workflows/push_to_ghcr.yml b/.github/workflows/push_to_ghcr.yml new file mode 100644 index 0000000..1d218c2 --- /dev/null +++ b/.github/workflows/push_to_ghcr.yml @@ -0,0 +1,40 @@ +name: Push to ghcr.io + +on: + push: + branches: + - main + - master + pull_request: + +jobs: + build_and_push: + name: Build and push + runs-on: ubuntu-latest + permissions: write-all + steps: + - name: Checkout + uses: actions/checkout@v4 + - name: Set Build Timestamp + run: echo "BUILD_TIMESTAMP=$(date +'%Y-%m-%dT%H:%M:%S:%z')" >> $GITHUB_ENV + - name: Log in to registry + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + - name: Build and push + uses: docker/build-push-action@v5 + env: + BUILD_BRANCH: ${{ github.head_ref || github.ref_name }} + with: + context: . + target: app + push: true + build-args: | + BUILD_BRANCH=${{ env.BUILD_BRANCH }} + BUILD_COMMIT=${{ github.sha }} + BUILD_TIMESTAMP=${{ env.BUILD_TIMESTAMP }} + tags: | + ghcr.io/${{ github.repository }}:latest + ghcr.io/${{ github.repository }}:${{ env.BUILD_BRANCH }} diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml new file mode 100644 index 0000000..5207a5d --- /dev/null +++ b/.github/workflows/test.yml @@ -0,0 +1,74 @@ +# By default, GitHub Actions don't have permission to write to the ghcr.io registry. +# - Go to: Settings (of this repository) -> Actions -> General -> Workflow permissions +# - Enable: Read and write permissions +name: Lint and Test + +on: + push: + branches: + - main + - master + pull_request: + +jobs: + test: + runs-on: ubuntu-latest + permissions: write-all + strategy: + matrix: + python-version: [ "3.11.6" ] + name: Python ${{ matrix.python-version }} + env: + TAG: devcontainer-${{ matrix.python-version }}-${{ github.head_ref || github.ref_name }} + steps: + # https://github.com/actions/checkout + - name: Checkout + uses: actions/checkout@v4 + + # Add an empty .env file. + # The devcontainers/ci build action fails when the docker-compose.yml file references an .env file that does not exist. + - name: Touch .env + run: touch .env + + # https://github.com/docker/login-action + - name: Log in to registry + uses: docker/login-action@v3 + with: + registry: ghcr.io + username: ${{ github.actor }} + password: ${{ secrets.GITHUB_TOKEN }} + + # https://github.com/devcontainers/ci + - name: Build DevContainer + uses: devcontainers/ci@v0.3 + env: + PYTHON_VERSION: ${{ matrix.python-version }} + with: + imageName: ghcr.io/${{ github.repository }} + cacheFrom: ghcr.io/${{ github.repository }}:${{ env.TAG }} + imageTag: ${{ env.TAG }} + push: always + + - name: Run lint + uses: devcontainers/ci@v0.3 + with: + cacheFrom: ghcr.io/${{ github.repository }}:${{ env.TAG }} + push: never + runCmd: poe lint + + - name: Run test + uses: devcontainers/ci@v0.3 + with: + cacheFrom: ghcr.io/${{ github.repository }}:${{ env.TAG }} + push: never + runCmd: poe test + + # https://github.com/codecov/codecov-action + - name: Upload coverage + uses: codecov/codecov-action@v3 + with: + files: reports/coverage.xml + env: + token: ${{ secrets.CODECOV_TOKEN }} + fail_ci_if_error: false + verbose: true diff --git a/.gitignore b/.gitignore index 68bc17f..3d4f8c7 100644 --- a/.gitignore +++ b/.gitignore @@ -3,158 +3,24 @@ __pycache__/ *.py[cod] *$py.class -# C extensions -*.so - -# Distribution / packaging -.Python -build/ -develop-eggs/ -dist/ -downloads/ -eggs/ -.eggs/ -lib/ -lib64/ -parts/ -sdist/ -var/ -wheels/ -share/python-wheels/ -*.egg-info/ -.installed.cfg -*.egg -MANIFEST - -# PyInstaller -# Usually these files are written by a python script from a template -# before PyInstaller builds the exe, so as to inject date/other infos into it. -*.manifest -*.spec - -# Installer logs -pip-log.txt -pip-delete-this-directory.txt - # Unit test / coverage reports htmlcov/ -.tox/ -.nox/ -.coverage -.coverage.* -.cache -nosetests.xml -coverage.xml -*.cover -*.py,cover -.hypothesis/ .pytest_cache/ -cover/ - -# Translations -*.mo -*.pot - -# Django stuff: -*.log -local_settings.py -db.sqlite3 -db.sqlite3-journal +reports/ -# Flask stuff: -instance/ -.webassets-cache - -# Scrapy stuff: -.scrapy - -# Sphinx documentation -docs/_build/ - -# PyBuilder -.pybuilder/ -target/ +# Ruff +.ruff_cache/ # Jupyter Notebook .ipynb_checkpoints -# IPython -profile_default/ -ipython_config.py - -# pyenv -# For a library or package, you might want to ignore these files since the code is -# intended to run in multiple environments; otherwise, check them in: -# .python-version - -# pipenv -# According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control. -# However, in case of collaboration, if having platform-specific dependencies or dependencies -# having no cross-platform support, pipenv may install dependencies that don't work, or not -# install all needed dependencies. -#Pipfile.lock - -# poetry -# Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control. -# This is especially recommended for binary packages to ensure reproducibility, and is more -# commonly ignored for libraries. -# https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control -#poetry.lock - -# pdm -# Similar to Pipfile.lock, it is generally recommended to include pdm.lock in version control. -#pdm.lock -# pdm stores project-wide configurations in .pdm.toml, but it is recommended to not include it -# in version control. -# https://pdm.fming.dev/#use-with-ide -.pdm.toml - -# PEP 582; used by e.g. github.com/David-OConnor/pyflow and github.com/pdm-project/pdm -__pypackages__/ - -# Celery stuff -celerybeat-schedule -celerybeat.pid - -# SageMath parsed files -*.sage.py - # Environments .env -.venv -env/ -venv/ -ENV/ -env.bak/ -venv.bak/ - -# Spyder project settings -.spyderproject -.spyproject - -# Rope project settings -.ropeproject - -# mkdocs documentation -/site +.venv/ # mypy .mypy_cache/ -.dmypy.json -dmypy.json - -# Pyre type checker -.pyre/ - -# pytype static type analyzer -.pytype/ -# Cython debug symbols -cython_debug/ # PyCharm -# JetBrains specific template is maintained in a separate JetBrains.gitignore that can -# be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore -# and can be added to the global gitignore or merged into this file. For a more nuclear -# option (not recommended) you can uncomment the following to ignore the entire idea folder. -#.idea/ +.idea/ diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml new file mode 100644 index 0000000..4357cd7 --- /dev/null +++ b/.pre-commit-config.yaml @@ -0,0 +1,88 @@ +# https://pre-commit.com +default_language_version: + python: python3.11 +default_install_hook_types: [commit-msg, pre-commit] +default_stages: [commit, manual] +fail_fast: true +repos: + - repo: meta + hooks: + - id: check-useless-excludes + - repo: https://github.com/pre-commit/pygrep-hooks + rev: v1.10.0 + hooks: + - id: python-check-mock-methods + - id: python-use-type-annotations + - id: rst-backticks + - id: rst-directive-colons + - id: rst-inline-touching-normal + - id: text-unicode-replacement-char + - repo: https://github.com/pre-commit/pre-commit-hooks + rev: v4.5.0 + hooks: + - id: check-added-large-files + - id: check-ast + - id: check-builtin-literals + - id: check-case-conflict + - id: check-docstring-first + - id: check-json + - id: check-merge-conflict + args: [--assume-in-merge] + - id: check-shebang-scripts-are-executable + - id: check-symlinks + - id: check-toml + - id: check-vcs-permalinks + - id: check-xml + - id: check-yaml + - id: debug-statements + - id: destroyed-symlinks + - id: detect-private-key + - id: end-of-file-fixer + types: [python] + - id: fix-byte-order-marker + - id: mixed-line-ending + - id: name-tests-test + args: [--pytest-test-first] + - id: trailing-whitespace + types: [python] + - repo: local + hooks: + - id: forbidden-files + name: forbidden files + entry: found Copier update rejection files; review them and remove them + language: fail + files: "\\.rej$" + - id: ruff-check + name: ruff check + entry: poetry run ruff check + require_serial: true + language: system + types_or: [python, pyi] + - id: ruff-format + name: ruff format + entry: poetry run ruff format + require_serial: true + language: system + types_or: [python, pyi] + - id: shellcheck + name: shellcheck + entry: poetry run shellcheck + args: [--check-sourced] + language: system + types: [shell] + - id: poetry-check + name: poetry check + entry: poetry check + language: system + pass_filenames: false + - id: poetry-check-lock + name: poetry check lock + entry: poetry check + args: [--lock] + language: system + pass_filenames: false + - id: mypy + name: mypy + entry: poetry run mypy + language: system + types: [python] diff --git a/.python-version b/.python-version new file mode 100644 index 0000000..1ee6443 --- /dev/null +++ b/.python-version @@ -0,0 +1 @@ +3.11.6 \ No newline at end of file diff --git a/Dockerfile b/Dockerfile new file mode 100644 index 0000000..a51cb8c --- /dev/null +++ b/Dockerfile @@ -0,0 +1,73 @@ +# syntax=docker/dockerfile:1 +ARG PYTHON_VERSION=3.11.6 +FROM python:$PYTHON_VERSION-slim AS base + +LABEL org.opencontainers.image.description "monitoring vespa nests" + +ENV PYTHONFAULTHANDLER 1 +ENV PYTHONUNBUFFERED 1 + +# Install Poetry. +ENV POETRY_VERSION 1.7.1 +RUN --mount=type=cache,target=/root/.cache/pip/ \ + pip install poetry==$POETRY_VERSION + +# Install curl, compilers, and GDAL dependencies. +RUN rm /etc/apt/apt.conf.d/docker-clean +RUN --mount=type=cache,target=/var/cache/apt/ \ + --mount=type=cache,target=/var/lib/apt/ \ + apt-get update && apt-get install --no-install-recommends --yes curl build-essential gdal-bin libgdal-dev + +# Configure GDAL environment variables, adjust according to the installed GDAL version +ENV GDAL_LIBRARY_PATH /usr/lib/libgdal.so +ENV GEOS_LIBRARY_PATH /usr/lib/libgeos_c.so + +# Create and activate a virtual environment. +RUN python -m venv /opt/vespadb-env +ENV PATH /opt/vespadb-env/bin:$PATH +ENV VIRTUAL_ENV /opt/vespadb-env + +WORKDIR /workspaces/vespadb/ + +RUN mkdir -p /root/.cache/pypoetry/ && mkdir -p /root/.config/pypoetry/ && \ + mkdir -p src/vespadb/ && touch src/vespadb/__init__.py && touch README.md + +FROM base AS dev + +# Install DevContainer utilities: zsh, git, and starship prompt. Note: Docker CLI setup has been updated. +RUN --mount=type=cache,target=/var/cache/apt/ \ + --mount=type=cache,target=/var/lib/apt/ \ + apt-get update && apt-get install --yes --no-install-recommends openssh-client git zsh gnupg lsb-release + +# Setup Docker repository and install Docker CLI +RUN curl -fsSL https://download.docker.com/linux/debian/gpg | gpg --dearmor -o /usr/share/keyrings/docker-archive-keyring.gpg && \ + echo "deb [arch=$(dpkg --print-architecture) signed-by=/usr/share/keyrings/docker-archive-keyring.gpg] https://download.docker.com/linux/debian $(lsb_release -cs) stable" | tee /etc/apt/sources.list.d/docker.list > /dev/null && \ + apt-get update && apt-get install --yes --no-install-recommends docker-ce-cli + +# Install starship prompt and configure Git +RUN sh -c "$(curl -fsSL https://starship.rs/install.sh)" -- "--yes" && \ + git config --system --add safe.directory '*' && \ + echo 'eval "$(starship init zsh)"' >> ~/.zshrc \ + # Commented out to avoid build failure. Uncomment if poe-the-poet is installed and configured correctly. + # && echo 'poe --help' >> ~/.zshrc \ + && zsh -c 'source ~/.zshrc' + +CMD ["zsh"] + +FROM base AS app + +COPY poetry.lock* pyproject.toml /workspaces/vespadb/ +RUN --mount=type=cache,target=/root/.cache/pypoetry/ \ + poetry install --only main --no-interaction --no-ansi + +COPY . . + +ENTRYPOINT ["/opt/vespadb-env/bin/poe"] +CMD ["serve"] + +ARG BUILD_BRANCH +ENV BUILD_BRANCH $BUILD_BRANCH +ARG BUILD_COMMIT +ENV BUILD_COMMIT $BUILD_COMMIT +ARG BUILD_TIMESTAMP +ENV BUILD_TIMESTAMP $BUILD_TIMESTAMP diff --git a/Makefile b/Makefile new file mode 100644 index 0000000..20e27f7 --- /dev/null +++ b/Makefile @@ -0,0 +1,44 @@ +# Convenient shortcuts to run some tasks +# Useful if you're not using DevContainers + +# Default target when just `make` is executed +default: help + +# Show help +.PHONY: help +help: + @echo "Usage:" + @echo " make [command]" + @echo "" + @echo "Commands:" + @echo " lint Run linters" + @echo " safety Run safety" + @echo " test Run tests" + @echo " lock Update poetry lock file" + @echo " shell Open a shell in the dev container" + @echo "" + +# Run lint +.PHONY: lint +lint: + docker compose run devcontainer poe lint + +# Run safety +.PHONY: safety +safety: + docker compose run devcontainer poe safety + +# Run tests +.PHONY: test +test: + docker compose run devcontainer poe test + +# Update poetry lock file +.PHONY: lock +lock: + docker compose run devcontainer poetry lock --no-update + +# Open a docker shell +.PHONY: shell +shell: + docker compose run devcontainer diff --git a/__init__.py b/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/docker-compose.yml b/docker-compose.yml new file mode 100644 index 0000000..ed53e4f --- /dev/null +++ b/docker-compose.yml @@ -0,0 +1,44 @@ +version: "3.9" + +services: + devcontainer: + build: + context: . + args: + PYTHON_VERSION: ${PYTHON_VERSION:-3.11.6} + target: dev + stdin_open: true + tty: true + volumes: + - .:/workspaces/vespadb/ + + app: + build: + context: . + target: app + tty: true + ports: + - "8001:8000" + volumes: + - .:/workspaces/vespadb/ + command: [ "serve", "--dev" ] + working_dir: /workspaces/vespadb/ + environment: + - PYTHONPATH=/workspaces/vespadb + + db: + image: postgis/postgis:latest + environment: + POSTGRES_DB: vespadb + POSTGRES_USER: vespauser + POSTGRES_PASSWORD: vespauserpassword + volumes: + - postgres_data:/var/lib/postgresql/data + +volumes: + postgres_data: + + +networks: + default: + name: vespadb-network diff --git a/manage.py b/manage.py new file mode 100644 index 0000000..f820411 --- /dev/null +++ b/manage.py @@ -0,0 +1,23 @@ +#!/usr/bin/env python +"""Django's command-line utility for administrative tasks.""" + +import os +import sys + + +def main() -> None: + """Run administrative tasks.""" + os.environ.setdefault("DJANGO_SETTINGS_MODULE", "vespadb.settings") + try: + from django.core.management import execute_from_command_line # noqa: PLC0415 + except ImportError as exc: + raise ImportError( + "Couldn't import Django. Are you sure it's installed and " + "available on your PYTHONPATH environment variable? Did you " + "forget to activate a virtual environment?" + ) from exc + execute_from_command_line(sys.argv) + + +if __name__ == "__main__": + main() diff --git a/nests/views.py b/nests/views.py new file mode 100644 index 0000000..fead220 --- /dev/null +++ b/nests/views.py @@ -0,0 +1,106 @@ +"""Views for the nests app.""" + +import csv +from typing import ClassVar + +from django.http import HttpResponse +from django_filters.rest_framework import DjangoFilterBackend +from rest_framework import filters, status, viewsets +from rest_framework.decorators import action +from rest_framework.permissions import AllowAny, BasePermission, IsAuthenticatedOrReadOnly +from rest_framework.request import Request +from rest_framework.response import Response +from rest_framework.serializers import BaseSerializer +from rest_framework_gis.filters import DistanceToPointFilter + +from vespadb.nests.filters import NestFilter +from vespadb.nests.models import Nest +from vespadb.permissions import IsAdmin, IsUser +from vespadb.nests.serializers import AdminNestPatchSerializer, NestPatchSerializer, NestSerializer + + +class NestsViewSet(viewsets.ModelViewSet): + """ViewSet for the Nest model.""" + + queryset: ClassVar = Nest.objects.all() + serializer_class: ClassVar[type[BaseSerializer]] = NestSerializer + permission_classes: ClassVar[list[type[BasePermission]]] = [IsAuthenticatedOrReadOnly] + filter_backends: ClassVar[list[type[DjangoFilterBackend]]] = [ + DjangoFilterBackend, + filters.OrderingFilter, + DistanceToPointFilter, + ] + filterset_fields: ClassVar[list[str]] = [ + "location", + "reported_datetime", + "status", + "nature_reserve", + "public_domain", + ] + filterset_class = NestFilter + ordering_fields: ClassVar[list[str]] = ["reported_datetime", "status"] + distance_filter_field = "location" + distance_filter_convert_meters = True + + def get_serializer_class(self) -> BaseSerializer: + """ + Return the class to use for the serializer. Defaults to using self.serializer_class. + + Admins get full serialization, others get basic serialization depending on the incoming request. + + :return: Serializer class + """ + if self.request.method == "PATCH": + if self.request.user.is_staff: + return AdminNestPatchSerializer + return NestPatchSerializer + return super().get_serializer_class() + + def get_permissions(self) -> list[BasePermission]: + """Determine the set of permissions that apply to the current action. + + - For 'update' and 'partial_update' actions, authenticated users are allowed to make changes. + - The 'destroy' action is restricted to admin users only. + - All other actions are available to authenticated users for modification, with readonly access for unauthenticated users. + + Returns + ------- + List[BasePermission]: A list of permission instances that should be applied to the action. + """ + if self.action in {"update", "partial_update"}: + permission_classes = [IsUser()] + elif self.action == "destroy": + permission_classes = [IsAdmin()] + else: + permission_classes = [AllowAny()] + return permission_classes + + @action(detail=False, methods=["post"], permission_classes=[IsAdmin]) + def bulk_import(self, request: Request) -> Response: + """Allow bulk import of nests for admin users only. + + :param request: The request object. + :return: HTTP Response indicating the status of the operation. + """ + # Placeholder for bulk import logic. + return Response(status=status.HTTP_501_NOT_IMPLEMENTED) + + @action(detail=False, methods=["get"], permission_classes=[IsAdmin]) + def export(self, request: Request) -> HttpResponse: + """ + Export nests data in CSV format for admin users only. + + :param request: The request object. + :return: HTTP response with the CSV data. + """ + response = HttpResponse(content_type="text/csv") + response["Content-Disposition"] = 'attachment; filename="nests_export.csv"' + + writer = csv.writer(response) + writer.writerow(["ID", "Creation Datetime", "Status", "Location", "Address"]) # Specify fields as needed. + + nests = Nest.objects.all().values_list("id", "creation_datetime", "status", "location", "address") + for nest in nests: + writer.writerow(nest) + + return response diff --git a/poetry.lock b/poetry.lock new file mode 100644 index 0000000..21a4b98 --- /dev/null +++ b/poetry.lock @@ -0,0 +1,1568 @@ +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. + +[[package]] +name = "annotated-types" +version = "0.6.0" +description = "Reusable constraint types to use with typing.Annotated" +optional = false +python-versions = ">=3.8" +files = [ + {file = "annotated_types-0.6.0-py3-none-any.whl", hash = "sha256:0641064de18ba7a25dee8f96403ebc39113d0cb953a01429249d5c7564666a43"}, + {file = "annotated_types-0.6.0.tar.gz", hash = "sha256:563339e807e53ffd9c267e99fc6d9ea23eb8443c08f112651963e24e22f84a5d"}, +] + +[[package]] +name = "asgiref" +version = "3.7.2" +description = "ASGI specs, helper code, and adapters" +optional = false +python-versions = ">=3.7" +files = [ + {file = "asgiref-3.7.2-py3-none-any.whl", hash = "sha256:89b2ef2247e3b562a16eef663bc0e2e703ec6468e2fa8a5cd61cd449786d4f6e"}, + {file = "asgiref-3.7.2.tar.gz", hash = "sha256:9e0ce3aa93a819ba5b45120216b23878cf6e8525eb3848653452b4192b92afed"}, +] + +[package.extras] +tests = ["mypy (>=0.800)", "pytest", "pytest-asyncio"] + +[[package]] +name = "asttokens" +version = "2.4.1" +description = "Annotate AST trees with source code positions" +optional = false +python-versions = "*" +files = [ + {file = "asttokens-2.4.1-py2.py3-none-any.whl", hash = "sha256:051ed49c3dcae8913ea7cd08e46a606dba30b79993209636c4875bc1d637bc24"}, + {file = "asttokens-2.4.1.tar.gz", hash = "sha256:b03869718ba9a6eb027e134bfdf69f38a236d681c83c160d510768af11254ba0"}, +] + +[package.dependencies] +six = ">=1.12.0" + +[package.extras] +astroid = ["astroid (>=1,<2)", "astroid (>=2,<4)"] +test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] + +[[package]] +name = "certifi" +version = "2024.2.2" +description = "Python package for providing Mozilla's CA Bundle." +optional = false +python-versions = ">=3.6" +files = [ + {file = "certifi-2024.2.2-py3-none-any.whl", hash = "sha256:dc383c07b76109f368f6106eee2b593b04a011ea4d55f652c6ca24a754d1cdd1"}, + {file = "certifi-2024.2.2.tar.gz", hash = "sha256:0569859f95fc761b18b45ef421b1290a0f65f147e92a1e5eb3e635f9a5e4e66f"}, +] + +[[package]] +name = "cfgv" +version = "3.4.0" +description = "Validate configuration and produce human readable error messages." +optional = false +python-versions = ">=3.8" +files = [ + {file = "cfgv-3.4.0-py2.py3-none-any.whl", hash = "sha256:b7265b1f29fd3316bfcd2b330d63d024f2bfd8bcb8b0272f8e19a504856c48f9"}, + {file = "cfgv-3.4.0.tar.gz", hash = "sha256:e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560"}, +] + +[[package]] +name = "charset-normalizer" +version = "3.3.2" +description = "The Real First Universal Charset Detector. 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"pytest-timeout (>=2.1)", "setuptools (>=68)", "time-machine (>=2.10)"] + +[[package]] +name = "wcwidth" +version = "0.2.13" +description = "Measures the displayed width of unicode strings in a terminal" +optional = false +python-versions = "*" +files = [ + {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, + {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, +] + +[metadata] +lock-version = "2.0" +python-versions = ">=3.11.6,<4.0" +content-hash = "aa75c5b988e5e3547e6cf6dc6454c8a3409cbc4d1274ac3b2a4c79d0b9594ff3" diff --git a/pyproject.toml b/pyproject.toml new file mode 100644 index 0000000..a91f6ef --- /dev/null +++ b/pyproject.toml @@ -0,0 +1,187 @@ +[tool.poetry] # https://python-poetry.org/docs/pyproject/ +name = "vespadb" +version = "0.0.0" +description = "monitoring vespa nests" +authors = [] +license = "Proprietary" +readme = "README.md" +repository = "https://github.com/inbo/vespa-db/" + +[build-system] # https://python-poetry.org/docs/pyproject/#poetry-and-pep-517 +requires = ["poetry-core>=1.0.0"] +build-backend = "poetry.core.masonry.api" + +[tool.poetry.dependencies] # https://python-poetry.org/docs/dependency-specification/ +python = ">=3.11.6,<4.0" +poethepoet = ">=0.24.4" +Django = ">=5.0.2" +gunicorn = ">=21.2.0" +pydantic = ">=2.6.1" +djangorestframework = "^3.14.0" +django-filter = "^23.5" +psycopg2 = "^2.9.9" +ipython = "^8.22.1" +drf-yasg = "^1.21.7" +djangorestframework-gis = "^1.0" + +[tool.poetry.group.dev.dependencies] # https://python-poetry.org/docs/master/managing-dependencies/ +coverage = { extras = ["toml"], version = ">=7.4.1" } +ipython = ">=8.20.0" +mypy = "1.8.0" +pre-commit = ">=3.6.2" +pytest = ">=8.0.1" +pytest-clarity = ">=1.0.1" +pytest-mock = ">=3.12.0" +ruff = ">=0.2.2" +safety = ">=2.3.5,!=2.3.5" +shellcheck-py = ">=0.9.0" +typeguard = ">=4.1.5" + +[[tool.poetry.source]] # https://python-poetry.org/docs/repositories/ +name = "pypi" +priority = "primary" + +[tool.coverage.report] # https://coverage.readthedocs.io/en/latest/config.html#report +# TODO: please raise the bar :) +fail_under = 0 +precision = 1 +show_missing = true +skip_covered = true + +[tool.coverage.run] # https://coverage.readthedocs.io/en/latest/config.html#run +branch = true +command_line = "--module pytest" +data_file = "reports/.coverage" +source = ["src"] + +[tool.coverage.xml] # https://coverage.readthedocs.io/en/latest/config.html#xml +output = "reports/coverage.xml" + +[tool.mypy] # https://mypy.readthedocs.io/en/latest/config_file.html +junit_xml = "reports/mypy.xml" +plugins = "pydantic.mypy" +strict = true +disallow_subclassing_any = false +disallow_untyped_decorators = false +explicit_package_bases = true +ignore_missing_imports = true +pretty = true +show_column_numbers = true +show_error_codes = true +show_error_context = true +warn_unreachable = true +mypy_path = "src" + +[tool.pydantic-mypy] # https://pydantic-docs.helpmanual.io/mypy_plugin/#configuring-the-plugin +init_forbid_extra = true +init_typed = true +warn_required_dynamic_aliases = true +warn_untyped_fields = true + +[tool.pytest.ini_options] # https://docs.pytest.org/en/latest/reference/reference.html#ini-options-ref +addopts = "--color=yes --doctest-modules --exitfirst --failed-first --strict-config --strict-markers --typeguard-packages=vespadb --verbosity=2 --junitxml=reports/pytest.xml" +filterwarnings = ["error", "ignore::DeprecationWarning"] +testpaths = ["src", "tests"] +xfail_strict = true +log_file_level = "info" +pythonpath = "src" + +[tool.ruff] # https://github.com/charliermarsh/ruff +fix = true +ignore-init-module-imports = true +line-length = 120 +select = ["A", "ASYNC", "B", "BLE", "C4", "C90", "D", "DTZ", "E", "EM", "ERA", "F", "FBT", "FLY", "FURB", "G", "I", "ICN", "INP", "INT", "ISC", "LOG", "N", "NPY", "PERF", "PGH", "PIE", "PLC", "PLE", "PLR", "PLW", "PT", "PTH", "PYI", "RET", "RSE", "RUF", "S", "SIM", "SLF", "SLOT", "T10", "T20", "TCH", "TID", "TRY", "UP", "W", "YTT"] +extend-safe-fixes = ["TID252"] # https://docs.astral.sh/ruff/settings/#extend-safe-fixes +ignore = ["FBT001", "E501", "EM101", "EM102", "ISC001", "RET504", "S101", "TRY003", "TRY300", "W505", "PLR6301", "RUF012"] +unfixable = ["ERA001", "F401", "F841", "T201", "T203"] # https://docs.astral.sh/ruff/settings/#unfixable +src = ["src", "tests"] +target-version = "py311" +force-exclude = true # https://docs.astral.sh/ruff/settings/#force-exclude +preview = true # https://docs.astral.sh/ruff/preview/ + +[tool.ruff.extend-per-file-ignores] # https://docs.astral.sh/ruff/settings/#extend-per-file-ignores +# Ignore missing __init__.py files in tests. +"tests/*" = ["INP001", "PLR2004"] + +[tool.ruff.flake8-tidy-imports] +# Disallow all relative imports. +ban-relative-imports = "all" + +[tool.ruff.mccabe] +max-complexity = 10 + +[tool.ruff.pep8-naming] +# Allow Pydantic's `@validator` decorator to trigger class method treatment. +classmethod-decorators = ["classmethod", "pydantic.validator", "pydantic.root_validator"] + +[tool.ruff.pycodestyle] +max-doc-length = 100 + +[tool.ruff.pydocstyle] +convention = "numpy" + +[tool.poe.tasks] # https://poethepoet.natn.io/index.html + [tool.poe.tasks.lint] + help = "Lint this package" + + [[tool.poe.tasks.lint.sequence]] + shell = '[ -d ".git" ] || { echo "\n\\033[0;31mGit is not initialized in this directory. Please run \"git init\" to fix linting.\\033[0m\n"; exit 1; }' + + [[tool.poe.tasks.lint.sequence]] + cmd = """ + pre-commit run + --all-files + --color always + """ + + + [tool.poe.tasks.safety] + help = "Run safety checks on this package" + shell = "safety check --continue-on-error --full-report" + + + [tool.poe.tasks.test] + help = "Test this package" + + [[tool.poe.tasks.test.sequence]] + cmd = "coverage run" + + [[tool.poe.tasks.test.sequence]] + cmd = "coverage report" + + [[tool.poe.tasks.test.sequence]] + cmd = "coverage xml" + + + [tool.poe.tasks.serve] # https://docs.gunicorn.org/en/stable/settings.html + help = "Serve Django App" + shell = """ + if [ $dev ] + then { + django-admin \ + runserver $host:$port \ + --settings=vespadb.settings + } else { + gunicorn \ + --bind=$host:$port \ + 'vespadb.wsgi' + } fi + """ + + [[tool.poe.tasks.serve.args]] + help = "Bind socket to this host (default: 0.0.0.0)" + name = "host" + options = ["--host"] + default = "0.0.0.0" + + [[tool.poe.tasks.serve.args]] + help = "Bind socket to this port (default: 8000)" + name = "port" + options = ["--port"] + default = "8000" + + [[tool.poe.tasks.serve.args]] + help = "Enable development mode" + type = "boolean" + name = "dev" + options = ["--dev"] diff --git a/tests/__init__.py b/tests/__init__.py new file mode 100644 index 0000000..d591714 --- /dev/null +++ b/tests/__init__.py @@ -0,0 +1 @@ +"""Test vespadb.""" diff --git a/tests/conftest.py b/tests/conftest.py new file mode 100644 index 0000000..d8d5840 --- /dev/null +++ b/tests/conftest.py @@ -0,0 +1 @@ +"""Pytest configuration.""" diff --git a/tests/vespadb/__init__.py b/tests/vespadb/__init__.py new file mode 100644 index 0000000..d591714 --- /dev/null +++ b/tests/vespadb/__init__.py @@ -0,0 +1 @@ +"""Test vespadb.""" diff --git a/tests/vespadb/test_foo.py b/tests/vespadb/test_foo.py new file mode 100644 index 0000000..451df1b --- /dev/null +++ b/tests/vespadb/test_foo.py @@ -0,0 +1,9 @@ +"""Example test file.""" + +import pytest + + +@pytest.mark.parametrize("foo", ["fu", "foo"]) +def test_bar(foo: str) -> None: + """Test foo bar does not fubar.""" + assert foo != "bar" diff --git a/vespadb/.DS_Store b/vespadb/.DS_Store new file mode 100644 index 0000000..b4d4bcd Binary files /dev/null and b/vespadb/.DS_Store differ diff --git a/vespadb/__init__.py b/vespadb/__init__.py new file mode 100644 index 0000000..198ce9c --- /dev/null +++ b/vespadb/__init__.py @@ -0,0 +1 @@ +""".""" diff --git a/vespadb/db.sqlite3 b/vespadb/db.sqlite3 new file mode 100644 index 0000000..e69de29 diff --git a/vespadb/nests/.DS_Store b/vespadb/nests/.DS_Store new file mode 100644 index 0000000..8d7274a Binary files /dev/null and b/vespadb/nests/.DS_Store differ diff --git a/vespadb/nests/__init__.py b/vespadb/nests/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/vespadb/nests/apps.py b/vespadb/nests/apps.py new file mode 100644 index 0000000..b77518d --- /dev/null +++ b/vespadb/nests/apps.py @@ -0,0 +1,10 @@ +"""Config for nests app.""" + +from django.apps import AppConfig + + +class NestsConfig(AppConfig): + """Config for nests app.""" + + default_auto_field = "django.db.models.BigAutoField" + name = "vespadb.nests" diff --git a/vespadb/nests/filters.py b/vespadb/nests/filters.py new file mode 100644 index 0000000..217b60e --- /dev/null +++ b/vespadb/nests/filters.py @@ -0,0 +1,19 @@ +"""Filters for the Nest model.""" + +from django.contrib.gis.db import models +from rest_framework_gis.filterset import GeoFilterSet + +from vespadb.nests.models import Nest + + +class NestFilter(GeoFilterSet): + """Filter for the Nest model.""" + + class Meta: + """Meta class for the NestFilter.""" + + model = Nest + fields = ["reported_datetime", "status", "nature_reserve", "public_domain"] + geo_filters = { + "location": ["exact", "distance_lte", "dwithin"], + } diff --git a/vespadb/nests/migrations/0001_initial.py b/vespadb/nests/migrations/0001_initial.py new file mode 100644 index 0000000..f9c1528 --- /dev/null +++ b/vespadb/nests/migrations/0001_initial.py @@ -0,0 +1,60 @@ +# Generated by Django 5.0.2 on 2024-02-23 15:37 + +import django.contrib.gis.db.models.fields +import django.db.models.deletion +from django.conf import settings +from django.db import migrations, models + + +class Migration(migrations.Migration): + + initial = True + + dependencies = [ + migrations.swappable_dependency(settings.AUTH_USER_MODEL), + ] + + operations = [ + migrations.CreateModel( + name='Nest', + fields=[ + ('id', models.AutoField(primary_key=True, serialize=False)), + ('creation_datetime', models.DateTimeField(auto_now_add=True)), + ('source', models.CharField(choices=[('OA', 'Observations API'), ('UR', 'User'), ('IM', 'Import')], default='OA', max_length=2)), + ('status', models.CharField(choices=[('UT', 'Untreated'), ('TR', 'Treated')], default='UT', max_length=2)), + ('validated', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('deleted', models.BooleanField(default=True)), + ('last_modification_datetime', models.DateTimeField(auto_now=True)), + ('reporter_phone_number', models.CharField(blank=True, max_length=20, null=True)), + ('reporter_email', models.EmailField(max_length=254)), + ('reported_datetime', models.DateTimeField()), + ('extermination_datetime', models.DateTimeField(blank=True, null=True)), + ('location', django.contrib.gis.db.models.fields.PointField(srid=4326)), + ('address', models.CharField(blank=True, max_length=255, null=True)), + ('images', models.JSONField(default=list)), + ('nature_reserve', models.BooleanField()), + ('nest_height', models.CharField(blank=True, choices=[('BL4', 'Below 4 meters'), ('AB4', 'Above 4 meters')], max_length=3, null=True)), + ('nest_location', models.CharField(blank=True, choices=[('OUB', 'Outdoor, uncovered on building'), ('OUT', 'Outdoor, uncovered in tree or bush'), ('OCS', 'Outdoor, covered by structure'), ('ONC', 'Outdoor, naturally covered'), ('IIB', 'Indoor, in building or structure'), ('UNK', 'Unknown')], max_length=3, null=True)), + ('remarks', models.TextField(blank=True, max_length=5000, null=True)), + ('nest_type', models.CharField(blank=True, choices=[('AEM', 'Active embryonic nest'), ('APR', 'Active primary nest'), ('ASE', 'Active secondary nest'), ('IEM', 'Inactive/empty nest'), ('POT', 'Potential nest (more info needed)'), ('OSP', 'Nest of another species'), ('NON', 'No nest (object, insect)')], max_length=3, null=True)), + ('feedback_provided', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('managed', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('duplicate', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('public_domain', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('result', models.CharField(choices=[('SUC', 'Successfully treated'), ('NST', 'Not successfully treated'), ('NTR', 'Not treated'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('problems', models.CharField(choices=[('NON', 'None'), ('STI', 'Stings'), ('NFAL', 'Nest fallen'), ('DIZ', 'Dizziness/nausea'), ('CHE', 'Chemical projection'), ('UNK', 'Unknown')], default='UNK', max_length=4)), + ('care', models.CharField(choices=[('NFR', 'Nest fully removed'), ('NPR', 'Nest partially removed'), ('NLH', 'Nest left hanging'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('product', models.CharField(choices=[('PER', 'Permas-D'), ('LN', 'Liquid nitrogen'), ('VF', 'Vespa Ficam D'), ('TP', 'Topscore PAL'), ('EAE', 'Ether/aceton/ethyl acetate'), ('DE', 'Diatomaceous earth'), ('OTH', 'Other'), ('NON', 'None'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('method', models.CharField(choices=[('FRZ', 'Freezing'), ('TLP', 'Telescopic pole'), ('SC', 'Sealable container/box'), ('LS', 'Liquid sprayer'), ('PS', 'Powder sprayer'), ('NT', 'Not treated'), ('OTH', 'Other'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('extermination_file_number', models.CharField(blank=True, max_length=255, null=True)), + ('extermination_photos', models.JSONField(default=list)), + ('ANB_area', models.CharField(choices=[('YES', 'Yes'), ('NO', 'No'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('province', models.CharField(choices=[('WF', 'West Flanders'), ('EF', 'East Flanders'), ('ANT', 'Antwerp'), ('FB', 'Flemish Brabant'), ('LIM', 'Limburg'), ('NF', 'Non-Flemish'), ('UNK', 'Unknown')], default='UNK', max_length=3)), + ('exterminator', models.ForeignKey(blank=True, null=True, on_delete=django.db.models.deletion.CASCADE, related_name='nests_handled', to=settings.AUTH_USER_MODEL)), + ], + options={ + 'verbose_name': 'Nest', + 'verbose_name_plural': 'Nests', + }, + ), + ] diff --git a/vespadb/nests/migrations/__init__.py b/vespadb/nests/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/vespadb/nests/models.py b/vespadb/nests/models.py new file mode 100644 index 0000000..8bccfa1 --- /dev/null +++ b/vespadb/nests/models.py @@ -0,0 +1,189 @@ +"""Nest models for the nests app.""" + +from django.conf import settings +from django.contrib.gis.db import models as gis_models +from django.db import models +from django.utils.translation import gettext_lazy as _ + + +class SourceEnum(models.TextChoices): + """Enum for the source of the nest report.""" + + OBSERVATIONS_API = "OA", _("Observations API") + USER = "UR", _("User") + IMPORT = "IM", _("Import") + + +class NestStatusEnum(models.TextChoices): + """Enum for the status of the nest.""" + + UNTREATED = "UT", _("Untreated") + TREATED = "TR", _("Treated") + + +class NestHeightEnum(models.TextChoices): + """Enum for the height of the nest.""" + + BELOW_4_METERS = "BL4", _("Below 4 meters") + ABOVE_4_METERS = "AB4", _("Above 4 meters") + + +class NestLocationEnum(models.TextChoices): + """Enum for the location of the nest.""" + + OUTDOOR_UNCOVERED_ON_BUILDING = "OUB", _("Outdoor, uncovered on building") + OUTDOOR_UNCOVERED_IN_TREE = "OUT", _("Outdoor, uncovered in tree or bush") + OUTDOOR_COVERED_BY_STRUCTURE = "OCS", _("Outdoor, covered by structure") + OUTDOOR_NATURALLY_COVERED = "ONC", _("Outdoor, naturally covered") + INDOOR_IN_BUILDING = "IIB", _("Indoor, in building or structure") + UNKNOWN = "UNK", _("Unknown") + + +class NestTypeEnum(models.TextChoices): + """Enum for the type of the nest.""" + + ACTIVE_EMBRYONIC = "AEM", _("Active embryonic nest") + ACTIVE_PRIMARY = "APR", _("Active primary nest") + ACTIVE_SECONDARY = "ASE", _("Active secondary nest") + INACTIVE_EMPTY = "IEM", _("Inactive/empty nest") + POTENTIAL = "POT", _("Potential nest (more info needed)") + OTHER_SPECIES = "OSP", _("Nest of another species") + NO_NEST = "NON", _("No nest (object, insect)") + + +class YesNoUnknownEnum(models.TextChoices): + """Enum for yes, no, and unknown.""" + + YES = "YES", _("Yes") + NO = "NO", _("No") + UNKNOWN = "UNK", _("Unknown") + + +class ResultEnum(models.TextChoices): + """Enum for the result of the treatment.""" + + SUCCESSFULLY_TREATED = "SUC", _("Successfully treated") + NOT_SUCCESSFULLY_TREATED = "NST", _("Not successfully treated") + NOT_TREATED = "NTR", _("Not treated") + UNKNOWN = "UNK", _("Unknown") + + +class ProblemEnum(models.TextChoices): + """Enum for the problems with the nest.""" + + NONE = "NON", _("None") + STINGS = "STI", _("Stings") + NEST_FALLEN = "NFAL", _("Nest fallen") + DIZZINESS_NAUSEA = "DIZ", _("Dizziness/nausea") + CHEMICAL_PROJECTION = "CHE", _("Chemical projection") + UNKNOWN = "UNK", _("Unknown") + + +class CareEnum(models.TextChoices): + """Enum for the care of the nest.""" + + NEST_FULLY_REMOVED = "NFR", _("Nest fully removed") + NEST_PARTIALLY_REMOVED = "NPR", _("Nest partially removed") + NEST_LEFT_HANGING = "NLH", _("Nest left hanging") + UNKNOWN = "UNK", _("Unknown") + + +class ProductEnum(models.TextChoices): + """Enum for the product used for the treatment.""" + + PERMAS_D = "PER", _("Permas-D") + LIQUID_NITROGEN = "LN", _("Liquid nitrogen") + VESPA_FICAM_D = "VF", _("Vespa Ficam D") + TOPSCORE_PAL = "TP", _("Topscore PAL") + ETHER_ACETONE_ETHYL_ACETATE = "EAE", _("Ether/aceton/ethyl acetate") + DIATOMACEOUS_EARTH = "DE", _("Diatomaceous earth") + OTHER = "OTH", _("Other") + NONE = "NON", _("None") + UNKNOWN = "UNK", _("Unknown") + + +class MethodEnum(models.TextChoices): + """Enum for the method used for the treatment.""" + + FREEZING = "FRZ", _("Freezing") + TELESCOPIC_POLE = "TLP", _("Telescopic pole") + SEALABLE_CONTAINER = "SC", _("Sealable container/box") + LIQUID_SPRAYER = "LS", _("Liquid sprayer") + POWDER_SPRAYER = "PS", _("Powder sprayer") + NOT_TREATED = "NT", _("Not treated") + OTHER = "OTH", _("Other") + UNKNOWN = "UNK", _("Unknown") + + +class ProvinceEnum(models.TextChoices): + """Enum for the province of the nest.""" + + WEST_FLANDERS = "WF", _("West Flanders") + EAST_FLANDERS = "EF", _("East Flanders") + ANTWERP = "ANT", _("Antwerp") + FLEMISH_BRABANT = "FB", _("Flemish Brabant") + LIMBURG = "LIM", _("Limburg") + NON_FLEMISH = "NF", _("Non-Flemish") + UNKNOWN = "UNK", _("Unknown") + + +class Nest(models.Model): + """Model for a Vespa velutina nest.""" + + id = models.AutoField(primary_key=True) + creation_datetime = models.DateTimeField(auto_now_add=True) + source = models.CharField(max_length=2, choices=SourceEnum.choices, default=SourceEnum.OBSERVATIONS_API) + status = models.CharField(max_length=2, choices=NestStatusEnum.choices, default=NestStatusEnum.UNTREATED) + validated = models.CharField(max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN) + deleted = models.BooleanField(default=True) + last_modification_datetime = models.DateTimeField(auto_now=True) + + # Reporter details + reporter_phone_number = models.CharField(max_length=20, blank=True, null=True) + reporter_email = models.EmailField() + reported_datetime = models.DateTimeField() + + # Extermination details + exterminator = models.ForeignKey( + settings.AUTH_USER_MODEL, + on_delete=models.CASCADE, + related_name="nests_handled", + null=True, + blank=True, + ) + extermination_datetime = models.DateTimeField(blank=True, null=True) + + # Nest details + location = gis_models.PointField() + address = models.CharField(max_length=255, blank=True, null=True) + images = models.JSONField(default=list) + nature_reserve = models.BooleanField() + nest_height = models.CharField(max_length=3, choices=NestHeightEnum.choices, blank=True, null=True) + nest_location = models.CharField(max_length=3, choices=NestLocationEnum.choices, blank=True, null=True) + remarks = models.TextField(max_length=5000, blank=True, null=True) + nest_type = models.CharField(max_length=3, choices=NestTypeEnum.choices, blank=True, null=True) + feedback_provided = models.CharField( + max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN + ) + managed = models.CharField(max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN) + duplicate = models.CharField(max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN) + public_domain = models.CharField(max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN) + result = models.CharField(max_length=3, choices=ResultEnum.choices, default=ResultEnum.UNKNOWN) + problems = models.CharField(max_length=4, choices=ProblemEnum.choices, default=ProblemEnum.UNKNOWN) + care = models.CharField(max_length=3, choices=CareEnum.choices, default=CareEnum.UNKNOWN) + product = models.CharField(max_length=3, choices=ProductEnum.choices, default=ProductEnum.UNKNOWN) + method = models.CharField(max_length=3, choices=MethodEnum.choices, default=MethodEnum.UNKNOWN) + extermination_file_number = models.CharField(max_length=255, blank=True, null=True) + extermination_photos = models.JSONField(default=list) # List of extermination photo file names + ANB_area = models.CharField(max_length=3, choices=YesNoUnknownEnum.choices, default=YesNoUnknownEnum.UNKNOWN) + province = models.CharField(max_length=3, choices=ProvinceEnum.choices, default=ProvinceEnum.UNKNOWN) + + class Meta: + """Meta class for the Nest model.""" + + verbose_name = "Nest" + verbose_name_plural = "Nests" + + def __str__(self) -> str: + """Return the string representation of the nest.""" + return f"Nest {self.pk} - {self.status}" diff --git a/vespadb/nests/serializers.py b/vespadb/nests/serializers.py new file mode 100644 index 0000000..4098499 --- /dev/null +++ b/vespadb/nests/serializers.py @@ -0,0 +1,39 @@ +"""Serializers for the nests app.""" + +from typing import ClassVar + +from rest_framework import serializers + +from vespadb.nests.models import Nest + + +class NestSerializer(serializers.ModelSerializer): + """Serializer for the full details of a Nest model instance.""" + + class Meta: + """Meta class for the NestSerializer.""" + + model = Nest + fields = "__all__" + + +class NestPatchSerializer(serializers.ModelSerializer): + """Serializer for updating nests by exterminators with limited fields.""" + + class Meta: + """Meta class for the NestPatchSerializer.""" + + model = Nest + # Specify the fields that can be updated by exterminators. + fields: ClassVar[list[str]] = ["public_domain", "nature_reserve"] + read_only_fields: ClassVar[list[str]] = ["status", "exterminator", "extermination_datetime"] + + +class AdminNestPatchSerializer(serializers.ModelSerializer): + """Serializer for updating nests by admin users with access to all fields.""" + + class Meta: + """Meta class for the AdminNestPatchSerializer.""" + + model = Nest + fields = "__all__" # Admins can update all fields. diff --git a/vespadb/nests/tests.py b/vespadb/nests/tests.py new file mode 100644 index 0000000..7ce503c --- /dev/null +++ b/vespadb/nests/tests.py @@ -0,0 +1,3 @@ +from django.test import TestCase + +# Create your tests here. diff --git a/vespadb/nests/urls.py b/vespadb/nests/urls.py new file mode 100644 index 0000000..46f8652 --- /dev/null +++ b/vespadb/nests/urls.py @@ -0,0 +1,17 @@ +"""vespadb Nests URL Configuration.""" + +from django.urls import include, path +from rest_framework.routers import DefaultRouter + +from vespadb.nests.views import NestsViewSet + +app_name = "nests" + +# Create a router and register our viewsets with it. +router = DefaultRouter() +router.register(r"nests", NestsViewSet) + +# The API URLs are now determined automatically by the router. +urlpatterns = [ + path("", include(router.urls)), +] diff --git a/vespadb/nests/views.py b/vespadb/nests/views.py new file mode 100644 index 0000000..d5a0924 --- /dev/null +++ b/vespadb/nests/views.py @@ -0,0 +1,106 @@ +"""Views for the nests app.""" + +import csv +from typing import ClassVar + +from django.http import HttpResponse +from django_filters.rest_framework import DjangoFilterBackend +from rest_framework import filters, status, viewsets +from rest_framework.decorators import action +from rest_framework.permissions import AllowAny, BasePermission, IsAuthenticatedOrReadOnly +from rest_framework.request import Request +from rest_framework.response import Response +from rest_framework.serializers import BaseSerializer +from rest_framework_gis.filters import DistanceToPointFilter + +from vespadb.nests.filters import NestFilter +from vespadb.nests.models import Nest +from vespadb.nests.serializers import AdminNestPatchSerializer, NestPatchSerializer, NestSerializer +from vespadb.permissions import IsAdmin, IsUser + + +class NestsViewSet(viewsets.ModelViewSet): + """ViewSet for the Nest model.""" + + queryset: ClassVar = Nest.objects.all() + serializer_class: ClassVar[type[BaseSerializer]] = NestSerializer + permission_classes: ClassVar[list[type[BasePermission]]] = [IsAuthenticatedOrReadOnly] + filter_backends: ClassVar[list[type[DjangoFilterBackend]]] = [ + DjangoFilterBackend, + filters.OrderingFilter, + DistanceToPointFilter, + ] + filterset_fields: ClassVar[list[str]] = [ + "location", + "reported_datetime", + "status", + "nature_reserve", + "public_domain", + ] + filterset_class = NestFilter + ordering_fields: ClassVar[list[str]] = ["reported_datetime", "status"] + distance_filter_field = "location" + distance_filter_convert_meters = True + + def get_serializer_class(self) -> BaseSerializer: + """ + Return the class to use for the serializer. Defaults to using self.serializer_class. + + Admins get full serialization, others get basic serialization depending on the incoming request. + + :return: Serializer class + """ + if self.request.method == "PATCH": + if self.request.user.is_staff: + return AdminNestPatchSerializer + return NestPatchSerializer + return super().get_serializer_class() + + def get_permissions(self) -> list[BasePermission]: + """Determine the set of permissions that apply to the current action. + + - For 'update' and 'partial_update' actions, authenticated users are allowed to make changes. + - The 'destroy' action is restricted to admin users only. + - All other actions are available to authenticated users for modification, with readonly access for unauthenticated users. + + Returns + ------- + List[BasePermission]: A list of permission instances that should be applied to the action. + """ + if self.action in {"update", "partial_update"}: + permission_classes = [IsUser()] + elif self.action == "destroy": + permission_classes = [IsAdmin()] + else: + permission_classes = [AllowAny()] + return permission_classes + + @action(detail=False, methods=["post"], permission_classes=[IsAdmin]) + def bulk_import(self, request: Request) -> Response: + """Allow bulk import of nests for admin users only. + + :param request: The request object. + :return: HTTP Response indicating the status of the operation. + """ + # Placeholder for bulk import logic. + return Response(status=status.HTTP_501_NOT_IMPLEMENTED) + + @action(detail=False, methods=["get"], permission_classes=[IsAdmin]) + def export(self, request: Request) -> HttpResponse: + """ + Export nests data in CSV format for admin users only. + + :param request: The request object. + :return: HTTP response with the CSV data. + """ + response = HttpResponse(content_type="text/csv") + response["Content-Disposition"] = 'attachment; filename="nests_export.csv"' + + writer = csv.writer(response) + writer.writerow(["ID", "Creation Datetime", "Status", "Location", "Address"]) # Specify fields as needed. + + nests = Nest.objects.all().values_list("id", "creation_datetime", "status", "location", "address") + for nest in nests: + writer.writerow(nest) + + return response diff --git a/vespadb/permissions.py b/vespadb/permissions.py new file mode 100644 index 0000000..750238d --- /dev/null +++ b/vespadb/permissions.py @@ -0,0 +1,21 @@ +"""Permissies voor de nesten API.""" + +from rest_framework import permissions +from rest_framework.request import Request +from rest_framework.views import View + + +class IsUser(permissions.BasePermission): + """Allow access only to authenticated users.""" + + def has_permission(self, request: Request, view: View) -> bool: + """Permission check for the user.""" + return bool(request.user and request.user.is_authenticated) + + +class IsAdmin(permissions.BasePermission): + """Allow access only to admin users.""" + + def has_permission(self, request: Request, view: View) -> bool: + """Permission check for the admin.""" + return bool(request.user and request.user.is_staff) diff --git a/vespadb/settings.py b/vespadb/settings.py new file mode 100644 index 0000000..51dfb68 --- /dev/null +++ b/vespadb/settings.py @@ -0,0 +1,134 @@ +""" +Django settings for vespadb project. + +Generated by 'django-admin startproject' using Django 5.0.2. + +For more information on this file, see +https://docs.djangoproject.com/en/5.0/topics/settings/ + +For the full list of settings and their values, see +https://docs.djangoproject.com/en/5.0/ref/settings/ +""" + +from pathlib import Path + +# Build paths inside the project like this: BASE_DIR / 'subdir'. +BASE_DIR = Path(__file__).resolve().parent.parent + + +# Quick-start development settings - unsuitable for production +# See https://docs.djangoproject.com/en/5.0/howto/deployment/checklist/ + +# SECURITY WARNING: keep the secret key used in production secret! +SECRET_KEY = "django-insecure-d^lhi8mkvk(r6a*!i-bgm@iw8_ve4ra9p)643puh^=!c*jchgr" # noqa: S105 + +# SECURITY WARNING: don't run with debug turned on in production! +DEBUG = True + +ALLOWED_HOSTS = ["0.0.0.0"] # type: ignore[var-annotated] + +# Application definition +INSTALLED_APPS = [ + "django.contrib.admin", + "django.contrib.auth", + "django.contrib.gis", + "django.contrib.contenttypes", + "django.contrib.sessions", + "django.contrib.messages", + "django.contrib.staticfiles", + "django_filters", + "rest_framework", + "rest_framework.authtoken", + "vespadb.nests", + "vespadb.users", + "drf_yasg", +] + +MIDDLEWARE = [ + "django.middleware.security.SecurityMiddleware", + "django.contrib.sessions.middleware.SessionMiddleware", + "django.middleware.common.CommonMiddleware", + "django.middleware.csrf.CsrfViewMiddleware", + "django.contrib.auth.middleware.AuthenticationMiddleware", + "django.contrib.messages.middleware.MessageMiddleware", + "django.middleware.clickjacking.XFrameOptionsMiddleware", +] + +REST_FRAMEWORK = { + "DEFAULT_AUTHENTICATION_CLASSES": [ + "rest_framework.authentication.TokenAuthentication", + ], +} + +DATABASES = { + "default": { + "ENGINE": "django.contrib.gis.db.backends.postgis", + "NAME": "vespadb", + "USER": "vespauser", + "PASSWORD": "vespauserpassword", + "HOST": "db", # Matches the service name in docker-compose.yml + "PORT": "5432", + } +} + +ROOT_URLCONF = "vespadb.urls" + +TEMPLATES = [ + { + "BACKEND": "django.template.backends.django.DjangoTemplates", + "DIRS": [], + "APP_DIRS": True, + "OPTIONS": { + "context_processors": [ + "django.template.context_processors.debug", + "django.template.context_processors.request", + "django.contrib.auth.context_processors.auth", + "django.contrib.messages.context_processors.messages", + ], + }, + }, +] + +WSGI_APPLICATION = "vespadb.wsgi.application" + + +# Password validation +# https://docs.djangoproject.com/en/5.0/ref/settings/#auth-password-validators + +AUTH_PASSWORD_VALIDATORS = [ + { + "NAME": "django.contrib.auth.password_validation.UserAttributeSimilarityValidator", + }, + { + "NAME": "django.contrib.auth.password_validation.MinimumLengthValidator", + }, + { + "NAME": "django.contrib.auth.password_validation.CommonPasswordValidator", + }, + { + "NAME": "django.contrib.auth.password_validation.NumericPasswordValidator", + }, +] + + +# Internationalization +# https://docs.djangoproject.com/en/5.0/topics/i18n/ + +LANGUAGE_CODE = "en-us" + +TIME_ZONE = "UTC" + +USE_I18N = True + +USE_TZ = True + + +# Static files (CSS, JavaScript, Images) +# https://docs.djangoproject.com/en/5.0/howto/static-files/ + +STATIC_URL = "static/" + +# Default primary key field type +# https://docs.djangoproject.com/en/5.0/ref/settings/#default-auto-field + +DEFAULT_AUTO_FIELD = "django.db.models.BigAutoField" diff --git a/vespadb/urls.py b/vespadb/urls.py new file mode 100644 index 0000000..f9df5b6 --- /dev/null +++ b/vespadb/urls.py @@ -0,0 +1,31 @@ +"""vespadb URL Configuration.""" + +from django.contrib import admin +from django.urls import include, path, re_path +from drf_yasg import openapi +from drf_yasg.views import get_schema_view +from rest_framework import permissions +from rest_framework.authtoken.views import obtain_auth_token + +schema_view = get_schema_view( + openapi.Info( + title="Vespawatch API Documentation", + default_version="v1", + description="Vespawatch API Documentation", + terms_of_service="", + contact=openapi.Contact(email=""), + license=openapi.License(name=""), + ), + public=True, + permission_classes=(permissions.AllowAny,), +) +urlpatterns = [ + re_path(r"^swagger(?P\.json|\.yaml)$", schema_view.without_ui(cache_timeout=0), name="schema-json"), + path("swagger/", schema_view.with_ui("swagger", cache_timeout=0), name="schema-swagger-ui"), + path("redoc/", schema_view.with_ui("redoc", cache_timeout=0), name="schema-redoc"), + path("admin/", admin.site.urls), + path("api-token-auth/", obtain_auth_token, name="api_token_auth"), + # Include the nests app URLs + path("", include("vespadb.nests.urls", namespace="nests")), + path("", include("vespadb.users.urls", namespace="users")), +] diff --git a/vespadb/users/__init__.py b/vespadb/users/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/vespadb/users/admin.py b/vespadb/users/admin.py new file mode 100644 index 0000000..8c38f3f --- /dev/null +++ b/vespadb/users/admin.py @@ -0,0 +1,3 @@ +from django.contrib import admin + +# Register your models here. diff --git a/vespadb/users/apps.py b/vespadb/users/apps.py new file mode 100644 index 0000000..08db459 --- /dev/null +++ b/vespadb/users/apps.py @@ -0,0 +1,10 @@ +"""VespaDB Users App Configurations.""" + +from django.apps import AppConfig + + +class UsersConfig(AppConfig): + """VespaDB Users App Configurations.""" + + default_auto_field = "django.db.models.BigAutoField" + name = "vespadb.users" diff --git a/vespadb/users/migrations/__init__.py b/vespadb/users/migrations/__init__.py new file mode 100644 index 0000000..e69de29 diff --git a/vespadb/users/models.py b/vespadb/users/models.py new file mode 100644 index 0000000..71a8362 --- /dev/null +++ b/vespadb/users/models.py @@ -0,0 +1,3 @@ +from django.db import models + +# Create your models here. diff --git a/vespadb/users/serializers.py b/vespadb/users/serializers.py new file mode 100644 index 0000000..8c95526 --- /dev/null +++ b/vespadb/users/serializers.py @@ -0,0 +1,21 @@ +"""Serializers for the users app.""" + +from typing import Any + +from django.contrib.auth.models import User +from rest_framework import serializers + + +class UserSerializer(serializers.ModelSerializer): + """Serializer for the User model.""" + + class Meta: + """Meta class for the UserSerializer.""" + + model = User + fields = ["id", "username", "email", "password", "date_joined"] + extra_kwargs = {"password": {"write_only": True}, "date_joined": {"read_only": True}} + + def create(self, validated_data: dict[str, Any]) -> User: + """Create a new user.""" + return User.objects.create_user(**validated_data) diff --git a/vespadb/users/tests.py b/vespadb/users/tests.py new file mode 100644 index 0000000..7ce503c --- /dev/null +++ b/vespadb/users/tests.py @@ -0,0 +1,3 @@ +from django.test import TestCase + +# Create your tests here. diff --git a/vespadb/users/urls.py b/vespadb/users/urls.py new file mode 100644 index 0000000..9fae6c2 --- /dev/null +++ b/vespadb/users/urls.py @@ -0,0 +1,15 @@ +"""URLs for the users app.""" + +from django.urls import include, path +from rest_framework.routers import DefaultRouter + +from vespadb.users.views import UserViewSet + +app_name = "users" + +router = DefaultRouter() +router.register(r"users", UserViewSet) + +urlpatterns = [ + path("", include(router.urls)), +] diff --git a/vespadb/users/views.py b/vespadb/users/views.py new file mode 100644 index 0000000..1785056 --- /dev/null +++ b/vespadb/users/views.py @@ -0,0 +1,19 @@ +"""Views for the users app.""" + +from django.contrib.auth.models import User +from rest_framework import serializers, viewsets + +from vespadb.permissions import IsAdmin +from vespadb.users.serializers import UserSerializer + + +class UserViewSet(viewsets.ModelViewSet): + """Viewset for the User model.""" + + queryset = User.objects.all() + serializer_class = UserSerializer + permission_classes = [IsAdmin] + + def perform_create(self, serializer: serializers.ModelSerializer) -> None: + """Create a new user.""" + serializer.save() diff --git a/vespadb/wsgi.py b/vespadb/wsgi.py new file mode 100644 index 0000000..1c8e34b --- /dev/null +++ b/vespadb/wsgi.py @@ -0,0 +1,16 @@ +""" +WSGI config for your_project_name project. + +It exposes the WSGI callable as a module-level variable named ``application``. + +For more information on this file, see +https://docs.djangoproject.com/en/3.x/howto/deployment/wsgi/ +""" + +import os + +from django.core.wsgi import get_wsgi_application + +os.environ.setdefault("DJANGO_SETTINGS_MODULE", "vespadb.settings") + +application = get_wsgi_application()