build_pdf_manual.yaml

name: Build PDF Manual

on:
  push:
    branches: [ main ]
  pull_request:
    branches: [ main ]
  workflow_dispatch:

jobs:
  build-pdf:
    runs-on: ubuntu-latest

    env:
      R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
      GITHUB_TOKEN: ${{ secrets.AUTOMATISATION }}

    steps:
    - name: Checkout repository
      uses: actions/checkout@v2

    - name: Setup R
      uses: r-lib/actions/setup-r@v2

    - name: Install linux libraries
      run: |
          sudo apt-get update
          sudo apt-get install -y libsodium-dev \
                                  libcurl4-openssl-dev \
                                  libgdal-dev \
                                  libproj-dev \
                                  libudunits2-dev \
                                  libharfbuzz-dev \
                                  libfribidi-dev

    - name: Install R dependencies
      run: |
        R -e "install.packages('devtools')"
        R -e "install.packages('roxygen2')"

    - name: Install minimal LaTeX
      run: |
        sudo apt-get install -y texlive-latex-recommended \
                                texlive-latex-extra \
                                texlive-fonts-recommended \
                                texinfo

    - name: Install R packages
      run: |
        source("preprocessing/install_imports.R")
      shell: Rscript {0}

    - name: cleanup_reference_manual
      run: |
        source("preprocessing/cleanup_reference_manual.R")
      shell: Rscript {0}

    - name: Build and document package
      run: |
        R -e "devtools::document()"

    - name: Check for viewers and remove
      run: |
        sudo apt-get remove -y xdg-utils || true

    - name: Generate PDF manual
      run: |
        R CMD Rd2pdf . -o fistools.pdf || { echo "Failed to generate PDF"; exit 1; }

    - name: List temp files for debugging
      if: failure()
      run: |
        ls -la /tmp
        ls -la $HOME
        ls -la /home/runner/work/${{ github.repository }}/
        cat /home/runner/work/${{ github.repository }}/fistools.pdf.log || true
        cat /home/runner/work/${{ github.repository }}/*.log || true

    - name: Commit and push changes
      if: success()
      uses: devops-infra/action-commit-push@master
      with:
        github_token: ${{ secrets.AUTOMATISATION }}
        commit_prefix: "[AUTO]"
        commit_message: "update fistools"