From 553bf1cc47730a5db42a2ec668da373f79870fdf Mon Sep 17 00:00:00 2001
From: Damiano Oldoni <damiano.oldoni@inbo.be>
Date: Thu, 9 Nov 2023 10:16:07 +0100
Subject: [PATCH] Add new column to vignette

---
 vignettes/record-table.Rmd | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/vignettes/record-table.Rmd b/vignettes/record-table.Rmd
index 03aec8a1..3f352eb7 100644
--- a/vignettes/record-table.Rmd
+++ b/vignettes/record-table.Rmd
@@ -44,12 +44,13 @@ If we consider that all observations are independent, then, it will be sufficien
 get_record_table(mica)
 ```
 
-The function returns the same columns as the camtrapR's function `recordTable()`. The following mapping is applied:
+The function returns the same columns as the camtrapR's function `recordTable()` except for column `n`. The following mapping is applied:
 
 column name output | description
 --- | ---
 `Station` | the station name as provided by argument `stationCol` (default: `locationName`). It has to be a column of `deployments`
 `Species` |  `scientific_name` column in `observations`
+`n` | `count` column in `observations` (number of individuals)
 `DateTimeOriginal` | the `timestamp` column in `observations`
 `Date` | the date from `timestamp`
 `Time` | the time part from `timestamp`
@@ -106,20 +107,19 @@ get_record_table(mica, stationCol = "locationID")
 
 It can happen that "duplicates" occur, e.g. when two distinct observations of the same species are made based on the same sequence of images, e.g. same species but different `lifeStage` or `sex`. You can decide what to do with these duplicates by using the argument `removeDuplicateRecords`: by default it is equal to `TRUE`. The duplicates are therefore removed.  To not remove them, set `removeDuplicateRecords` equal to `FALSE`.
 
-Let's create an easy example with duplicates based on `mica` datapackage:
+Let's create an easy example with a duplicate based on `mica` datapackage:
 
 ```{r dummy_data_with_duplicates}
 mica_dup <- mica
-  mica_dup$observations$sequenceID <- mica_dup$observations$sequenceID[1]
-  mica_dup$observations$deploymentID <- mica_dup$observations$deploymentID[1]
-  mica_dup$observations$timestamp <- mica_dup$observations$timestamp[1]
-  mica_dup$observations$scientificName <- "Anas strepera"
+# create a duplicate at 2020-07-29 05:46:48, location: B_DL_val 5_beek kleine vijver
+mica_dup$data$observations[4,"sequenceID"] <- mica_dup$data$observations$sequenceID[3]
+mica_dup$data$observations[4, "deploymentID"] <- mica_dup$data$observations$deploymentID[3]
+mica_dup$data$observations[4, "timestamp"] <- mica_dup$data$observations$timestamp[3]
 ```
 
 Record table without duplicates:
 
 ```{r no_duplicates}
-# equivalent of get_record_table(mica, removeDuplicateRecords = TRUE)
 get_record_table(mica_dup)
 ```