You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
I'm new for this wonderful tool. When i look up the 00-All.vcf.gz, I think it uses GRCh38.p7 as the reference assembly. While the other databases use Hg19 as the reference. I'd like to know if it is right to use liftover utility to convert genome coordinates from GRCh38 to Hg19.
The text was updated successfully, but these errors were encountered:
I also noticed the inconsistency of the data coordinates in the instructions.
You can get on those DBs the hg19 version of them. For the, dbSNP wget https://ftp.ncbi.nih.gov/snp/organisms/human_9606_b151_GRCh37p13/VCF/00-All.vcf.gz --no-passive-ftp
And the ExAC dataset should be this one: wget https://storage.googleapis.com/gcp-public-data--gnomad/legacy/exac_browser/ExAC.r1.sites.vep.vcf.gz
Hi,
I'm new for this wonderful tool. When i look up the 00-All.vcf.gz, I think it uses GRCh38.p7 as the reference assembly. While the other databases use Hg19 as the reference. I'd like to know if it is right to use liftover utility to convert genome coordinates from GRCh38 to Hg19.
The text was updated successfully, but these errors were encountered: