ifremer.config

//Profile config names for nf-core/configs
params {
  config_profile_description = 'The Ifremer Datarmor cluster profile'
  config_profile_contact = 'sebimer@ifremer.fr'
  config_profile_url = 'https://ifremer-bioinformatics.github.io/'
}

// Define the executor = cluster scheduler
executor {
    //check in nextflow documentation the scheduler name to match your cluster scheduler system
    name = 'pbspro'
    // according to your scheduler, adjust the exit time out (need to be high for pbspro)
    exitReadTimeout = '1440min'
}

params {
  max_memory = 500.GB
  max_cpus = 56
  max_time = 720.h //default queue
    queue = { task.cpus > 1 ? 'omp' : task.label && task.label.contains('internet_access') ? 'ftp' : 'sequentiel' }

    //clusterOptions can be used to add some native specifications not available in the standard parameters
    clusterOptions = '-m n -S /bin/bash'
}