From 71c79454817262c05037fd6888bf2c0780075559 Mon Sep 17 00:00:00 2001
From: Wanding Zhou <wanding.zhou@vai.org>
Date: Thu, 12 May 2016 09:29:23 -0400
Subject: [PATCH] --print-protein prints reference protein sequence for gene
 annotation

---
 transvar/region.py  | 2 +-
 transvar/version.py | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/transvar/region.py b/transvar/region.py
index f73d331..7896a58 100644
--- a/transvar/region.py
+++ b/transvar/region.py
@@ -298,7 +298,7 @@ def annotate_gene(args, q, tpts, db):
     for t in tpts:
         r = Record()
         r.chrm = t.chrm
-        r.gene = q.tok
+        r.gene = q.gene.name
         r.gnuc_range = '%d_%d' % (t.beg, t.end)
         r.tnuc_range = '%d_%d' % (1, t.cdslen())
         if t.strand == '+':
diff --git a/transvar/version.py b/transvar/version.py
index 615f7b5..633fe21 100644
--- a/transvar/version.py
+++ b/transvar/version.py
@@ -1 +1 @@
-__version__ = '2.2.9.20160503'
+__version__ = '2.2.10.20160512'