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DESCRIPTION
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Package: oposSOM
Title: Comprehensive analysis of transcriptome data
Version: 3.0.6
Description: This package translates microarray expression data into metadata
of reduced dimension. It provides various sample-centered and group-centered
visualizations, sample similarity analyses and functional enrichment analyses.
The underlying SOM algorithm combines feature clustering, multidimensional
scaling and dimension reduction, along with strong visualization capabilities.
It enables extraction and description of functional expression modules inherent
in the data.
Depends: R (>= 4.0.0), igraph (>= 1.0.0)
Imports: fastICA, tsne, scatterplot3d, pixmap, fdrtool, ape, biomaRt, Biobase, RcppParallel, Rcpp, methods, graph, future, future.apply, parallel
LinkingTo: RcppParallel, Rcpp
Suggests: knitr
VignetteBuilder: knitr
License: GPL (>=2)
Author: Henry Loeffler-Wirth <[email protected]>, Hoang Thanh Le <[email protected]> and Martin Kalcher <[email protected]>
Maintainer: Henry Loeffler-Wirth <[email protected]>
URL: http://som.izbi.uni-leipzig.de
biocViews: GeneExpression, DifferentialExpression, GeneSetEnrichment,
DataRepresentation, Visualization