HISTORY.rst

History

0.9.1.dev0

0.9.0 (2018-05-23)

• Update data managers when updating tools (thanks to @rhpvorderman). Pull Request 78, Issue 69
• Run data managers aggressive parallelization and refactoring (thanks to @rhpvorderman). Pull Request 79
• Makes publishing of imported workflows available (thanks to @pcm32). Pull Request 74
• Add option to test tools on update/install for Galaxy 18.05 (thanks to @jmchilton). Pull Request 81
• Upload 2.0 support for data library creation (thanks to @jmchilton). Pull Request 89
• Fixes to revision parsing in tools.yaml (thanks to @bgruening). Pull Request 70
• Add Codacy monitoring and badge (thanks to @jmchilton). Pull Request 73
• Fix typo in project organization document (thanks to @blankenberg). Pull Request 86
• Fix hardcoded log paths (thanks to @rhpvorderman). Pull Request 85
• Fix shed-tools update argparse handling (thanks to @rhpvorderman). Pull Request 88
• Fix a few lint issues (thanks to @jmchilton). Pull Request 90

0.8.0 (2017-12-29)

• Many new documentation enhancements (thanks to @rhpvorderman, and others)
• rename of shed-install to shed-tools and add a new --latest and --revision argument (thanks to @rhpvorderman)
• many fixes and new tests by (thanks to @mvdbeek)
• Parallelization of run-data-managers (thanks to @rhpvorderman)
• run-data-managers now uses more advanced templating for less repetitive input yamls (thanks to @rhpvorderman)
• run-data-managers now checks if a genome index is already present before running the data manager (thanks to @rhpvorderman)
• ephemeris will now use https by default instead of http (thanks to @bgruening)

0.7.0 (2017-06-27)

• Many new documentation enhancements (thanks to @rhpvorderman, @erasche, and others) - docs are now published to https://readthedocs.org/projects/ephemeris/.
• Fix problem with empty list options related to running data managers (thanks to @rhpvorderman).
• Enable data managers to run with API keys (thanks to @rhpvorderman).
• Add sleep command to wait for a Galaxy API to become available (thanks to @erasche).
• Preserve readable order of keys while processing tool lists (thanks to @drosofff).

0.6.1 (2017-04-17)

• Add Python 2 and 3 testing for all scripts against galaxy-docker-stable along with various refactoring to reduce code duplication and Python 3 fixes. #36

0.6.0 (2017-04-10)

• Add new connection options for setting up data libraries.

0.5.1 (2017-04-07)

• Fix new run-data-managers CLI entrypoint.

0.5.0 (2017-04-06)

• Add run-data-managers tool to trigger DM with multiple values and in order. #30
• The workflow install tool now supports a directory of workflows. #27
• enable global options in a tool yaml files, like install_resolver_dependencies: true #26
• Mention mimum required galaxy versions. #23 (thanks to @mvdbeek)

0.4.0 (2016-09-07)

• Be more generic in determining a server time-out (thanks to @afgane).
• Get tool list entrypoint and improvements (thanks to @mvdbeek).
• Rename tool_panel_section_name to tool_panel_section_label like ansible-galaxy-tools (thanks to @nturaga).
• Add missing file tool_list.yaml.sample (thanks to @nturaga).

0.3.0 (2016-08-26)

• More robust shed-install script, install dependencies by default, improve logging (thanks to @mvdbeek).

0.2.0 (2016-08-15)

• Add tool generate a tool list from a Galaxy workflow file (thanks to @drosofff).
• Fix various code quality issues including adding beta support for Python 3 (thanks in part to @mvdbeek).

0.1.0 (2016-06-15)

• Setup project, pull in scripts from ansible-galaxy-tools and adapt them for usage as a library.