From 4722e2dec6392e575db0acd18ed9edbe76da30db Mon Sep 17 00:00:00 2001 From: Toni Hermoso Pulido Date: Sat, 24 Jul 2021 15:32:47 +0200 Subject: [PATCH] Update README.md --- README.md | 15 ++++++++------- 1 file changed, 8 insertions(+), 7 deletions(-) diff --git a/README.md b/README.md index 58d3a56..cb35622 100644 --- a/README.md +++ b/README.md @@ -9,22 +9,23 @@ The pipeline uses a set of well characterised software to assign functional info The software used in this pipeline is mostly free software for academic users. For some software, such as signalP, a suitable license agreement should be obtained. More details about how to use this software in the *Associated containers* section. ## Installation -The pipeline is built on Nextflow as a woking engine, so it need to be installed first: + +If you want to use the ```latest``` version you can clone the last commit of the repository: ``` - export NXF_VER=20.10.0; curl -s https://get.nextflow.io | bash +git clone --–depth 1 https://github.com/guigolab/FA-nf ``` -The detailed procedure is described in the [Nextflow documentation](https://www.nextflow.io/docs/latest/getstarted.html) -You can place the Nextflow binary somewhere in your ```PATH``` or in the same location as where you are going to run the pipeline. +Alternately, and actually recommended, you can clone the whole repository and choose the tag you want with ```git checkout``` command, or download a specific release from: https://github.com/guigolab/FA-nf/releases -If you want to use the ```latest``` version you can clone the last commit of the repository: +Since the pipeline is built on Nextflow as a woking engine, it needs to be installed as well: ``` -git clone --–depth 1 https://github.com/guigolab/FA-nf + export NXF_VER=20.10.0; curl -s https://get.nextflow.io | bash ``` +The detailed procedure is described in the [Nextflow documentation](https://www.nextflow.io/docs/latest/getstarted.html) -Alternately you can clone the whole repository and choose the tag you want with ```git checkout``` command, or download a specific release from: https://github.com/guigolab/FA-nf/releases +You can place the Nextflow binary somewhere in your ```PATH``` or in the same location where the pipeline is going to be run. ### Associated containers