From 339c41348daacda886cbcf97b0181fb449a8d3da Mon Sep 17 00:00:00 2001 From: igrisch <48803245+igrisch@users.noreply.github.com> Date: Thu, 20 Jun 2024 13:00:56 -0400 Subject: [PATCH] Update 0009-05-01-Practical_Exercise_Solutions.md Change some wording in Exercise 9 from "results" to "inputs" (confused some people at Toronto workshop) --- _posts/0009-05-01-Practical_Exercise_Solutions.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/_posts/0009-05-01-Practical_Exercise_Solutions.md b/_posts/0009-05-01-Practical_Exercise_Solutions.md index 5e09b238..8ebcb1f5 100644 --- a/_posts/0009-05-01-Practical_Exercise_Solutions.md +++ b/_posts/0009-05-01-Practical_Exercise_Solutions.md @@ -277,8 +277,8 @@ library(devtools) # Create phenotype data needed for ballgown analysis ids=c("HCC1395_normal_rep1","HCC1395_normal_rep2","HCC1395_normal_rep3","HCC1395_tumor_rep1","HCC1395_tumor_rep2","HCC1395_tumor_rep3") type=c("normal","normal","normal","tumor","tumor","tumor") -results="/home/ubuntu/workspace/rnaseq/practice/expression/stringtie/ref_only/" -path=paste(results,ids,sep="") +inputs="/home/ubuntu/workspace/rnaseq/practice/expression/stringtie/ref_only/" +path=paste(inputs,ids,sep="") pheno_data=data.frame(ids,type,path) # Load ballgown data structure and save it to a variable "bg"