temp.R

sqs <- "NNNNNNNNNNNNNNNNNNNNGGANGTANNNNCCATGATTATCGCAAATCAAAACAAAACAAACTCAACAAAATACACGATAAAAAAAAAAACAAAAACAAACCAACAAAAAAAAATATATAAAAAAACAACCAAAAAACAAAAAAAAAAATACAATCCACACTCAAAAACCATCCAAAACATTACACATATCTTCAAACATATAATATCTTAAACAACCTCTAAATACAAACCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCACCCCTACCCTCCCCCTCTTACCGCACACCCCGCTAAATCTACTCTACCTTAACCTACAACAATACCCAATAACCCAATAACCTCCTTCCTACTACTGATAATAATTAATTAAGACGTCAGAATTCTCGAGGCGGCCGCATGTGCGTCTCCCTATAGTGAGTCGTATTAATTTCGCGGGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGGAGGACCGAAAGGAGCTAACCGCTTTTTTTGCACAACATGGGGGGATCATGGTAACTCGGCCTTGATCGNTGGGGAACCGGANGCTGANTTGAAGCCCATACCAANCNNNCGAACNNNGACACCNCCGATGCNNGGTAGNCATGGNNAACCAACGGTTGCCGCAAANCTATTNAACTGGGCGAANCTACTTNACTCTAGNCTTNCCCGGGCAACAATTNAANNAAANCTGGGATGGGAGGNGGNAATAAANGTTGGCAAGGAACCNCTTNCTGGNNNNNCCGGGCCNTTNCCNGGGCTGGGNNTGGNTTNNTTGGCTTNANNAANTNNNGGNANNCCCGGNNNANNCGGGGGNATTCTCCNNNGGNNNNNNATTTGGNNNNNCCNTTGGGGGGNCCNAANANNGGNAAANNCCNNNNCCNNNGTNNNNNNNAANNTTNNNNNNNNNNCCNNAACCGGGGGNAANNNNNNNGGNNNAANNNNANGGNNNNNNAANNNNNAAANNNNNAANNNCNNNNANTTNNNTNNNAANNNNNAAGGGNNNNNNNNNNCCNANNGGAATTTNAAANCNNNNTTNNNNNNNNAANCNTGGGNNNNNNANNCCNNAANNNNTTTTNANNNNNCNNTNNANNNNAAANNCCNTTTTNNNAANNNNNNNNNNTTTTTNAANAAANNNNNNNNNNNNNNNTTTTTNNNAANNTTNTNNNNAAAAANGNNNNNTTNNNNNNNGGGGNTNNAANNNANNNNNNNNNTTTTNNTTTNNNANNNAANNTTNNNNNNNNNNNGNNNNNNNNAAAAAANTTNCCCCNNNNTTNNAAANCNTNGNNNNNNNNNNTTTTNNNNNNNT,NNNNNNNNNGGNNCNANNNNGAGGTAAAAACCATGATTATCGCAAATCAAAACAAAACAAACTCAACGAAATACACGATAAAAAAAAAAAAACAAAAACAAACCAACAAAAAAAAATATGTAAAAAAACAACCAAAAAACAAAAAAAAAATACAATCCACACTCAAAAACCATCCAAAACATTACACATTTCCCTATACATATAATATCTTAAACAACCTCTAAATACAAACCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCGCCCCTGCCCTCCCCCTCTTACCGCACACCCCGCTAAATCTACTCTACCTTAACCTACAACAATACCCAATAACCCAATAACCTCCTTCCTACTACTGATAATAATTAATTAAGACGTCAGAATTCTCGAGGCGGCCGCATGTGCGTCTCCCTATAGTGAGTCGTATTAATTTCGCGGGCGGAACCCCTATTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAGTTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAACATGGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCCGGAGCTGAATGAAGCCATACCAANCGACNAANNNTGACACCACGNTGCCTNGTAGCAATGGNCANNAACNTNNNCGCAAACTAATTAACTGGGCGAACTACTTACNTCTAGCTTCCCNGGCAACAATTAANTANNNCTGGGATGGNNGGNGGNANAAAAGTTNGCAGGNACCNNTTTCTGNNNNNCGGGCCCTTNCGGNTGGNCTGGNTNANTTGGCTTNANAANTNNNGGNNNCCCGGGGNAANNNNGGNATNCTCNNGGNNNNCCTTNGGCNGNNNNTGGGGGNCCNNNNNGGNNNNAAGCCNNNCCCNNGTATCGGAANTNNNNNNNACCCCNAACNGGGGNANNNCCNNGGCCAANNNNNTGGNNTNGAACCNNAANTAAANNNNNNNCCNNNTNGNAANNNANGGNGNNNNNNNCNNNGNANNNAANNCNTTNGGNNNNAANNNGNNCNANNNNANNGNTTNNNNNNCCCNNNNNNNANCCNNTTNNANNTTNGGNNTTNANAAANNCNNNNNNNNTTNTTTTNAANTTTNAANNANNNNNNNNNNNNNNNNGGNNANNNNAANCCNNTTTTNTTNGNNNAANNNNCNCCNNNNGGNANCCCNNAAAANTNNCCCTTTNAANNNNNGGNNNNNGNTTTTTNNNNNNNNNNCCCCNNNNNNNNGNNNNNNNNNAAAANNCCCCCNNNNNNNNAAAAANNAAANNNNNNNAAANNNNNNNNTTNNNNNNNNNNNNNANNNCCNTTTNNNTTTTNNTTNNNNNNNNNGGNAAANNNNCNNNNNNNNNNNNNNGGNANNNNCCAAAAAANNACCCCCCCNNNNNNNNCCCNNNNNNGGNNNGNTTTNNNNTTNNNNNNNNNNNNNNNNNNNNNNCCCCCNCCNNNNNNNNNTNNNCCNAAANTGGNNTTNNGGGNNNNNTNNNNAAAANNNNNNNNANTAANCCNANTTTNNANGNNNNNNNTNGNANNGGNNNC,NNNNNNNNNANNACCCNCACTAANGGGNNTAGTCCTGCAGGTTTAAACGAATTCGCCCTTTATCGCAAATCAAAACAAAACAAACTCAACAAAATGCACGATAAAAAAAAAAAAACAAAAACAAACCAACAAAAAAAAATATATAAAAAAACAACCAAAAAACAAAAAAAAAAATACAAACCGCACTCAAAAACCGTCCAAAACATTACACATTCAATTTTACATATAATATCTTAAACGACCTCTAAATACGACCCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCACCCCTACCCTCCTCCTCTTACCGCACACCCCGCTAAATCTACTCTACCTTAACCTACGACAATACCCAATGACCCAATAACCTCCTTCCTACTAAAGGGCGAATTCGCGGCCGCTAAATTCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCNTTACCNAACTTNNNNGCCTTGANNNANANCCCCCTTNNNCNAANTNNNNNNAANNNNNNNANGCCCCNNNNNANCNCNNNNNNANNCNNNTNNCTNNNCNG,NNNNNNNNANNNNCTCACTAAAGGGNCTAGTCCTGCAGGTTTAAACGAATTCGCCCTTTATCGCAAATCAAAACAAAACAAACTCAACAAAATACACGATAAAAAAAAAAAAACAAAAACAAACCAACAAAAAAAAATATATAAAAAAACAACCAAAAAACAAAAAAAAAAATACAAACCGCACTCAAAAACCGTCCAAAACATTACACATTCAATTTTACATATAATATCTTAAACGGCCTCTAAATACGACCCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCACCCCTACCCTCCCCCTCTTACCGCACACCCCACTAAATCTACTCTACCTTAACCTACGACAATACCCAATAACCCAATAACCTCCTTCCTACTAAAGGGCGAATTCGCGGCCGCTAAATTCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTATACGTACGGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACACGCCGGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGTCTCCCGTGAACTTTACCCGGTGGTGCATATCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTGGCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAAATGTCAGGCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTCACGTAGAAAGCCAGTCCGCAGAAACGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCAGGTAGCTTGCAGTGGGCTTANNGGNNGATAGCTANACTGGNNGGNTTTTATGGNNAGCAAGCGAANCCGGATTNGCCAGCNNGGGGCGCCNTNNGGNTAAGGTTGGNAAGNCCCTGNNAANGTTAANTNGGNNTGGNTTTNNNTTGCNNNNNAAGGNNNNTGATGGGCCNNNGGG,NNNNNNANANCCTCACTAAAGGGACTAGTCCTGCAGGTTTAAACGAATTCGCCCTTTATCGCAAATCAAAACAAAACAAACTCAACAAAATACACGATAAAAAAAAAAAAACAAAAACAAACCAACAAAAAAAAATATATAAAAAAACGACCAAAAAACAAAAAAAAAAAATACAAACCGCACTCAAAAACCGTCCAAAACATTACACATTCAATTTTACATATAATATCTTAAACNACCTCTAAATACAACCCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCACCCCTACCCTCCCCCTCTTACCGCACACCCCACTAAATCTACTCTACCTTAACCTACNACAATACCCAATAACCCAATAACCTCCTTCCTACTAAAGGGCGAATTCGCGGCCGCTAAATTCAATTCGCCCTATAGNNAGTCGTATTACAATTCANNGGCCGTCGTTTTACAACGTCGNNACNGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTATACGTACGGCAGTTTAAGGTTTACACCTATAAAANANAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACACGCCGGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGNCTCCCGTGAACTTTACCCGGTGGTGCATATCGGGNATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTGGCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAAATGTCAGGCATGAGATTATCAAAAAGGATCTTCACCTANATCCTTTTCACGTAGAAAGCCAGTCCGCAGAAACGGNGCTGACCCCGGATGAATGNCAGCTACTGGGGCTATCTGGANAAGGGGAAACNGCAAGCNNNAAAGAGAAAGCAGGNANNNTTGCAAGNGGNCTTACATGGNNNNNAGCTANACTGGGNNGGTTTNATGGACNGCAAGGNNAACNGGAATTTGCCATCTTGGNNCNCNNNTCTGGTAAAGGTTNGGNNNAGCCCTTGNANNNNNNAACTGGGATGGNCTTTCCTGGNNACCAATGATCTTGATGGATNANTGGNAANCA,NNNNNNNNNNNNNCTNNCTAAAGGGNCTAGTCCTGCAGGTTTAAACGAATTCGCCCTTTATCACAAATCAAAACAAAACAAACTCAACAAAATACACAATAAAAAAAAAAAAACAAAAACAGACCAACAAAAAAAAATATATAAAAAAACAACCAAAAAACAAAAAAAAAAATACAAACCGCACTCAAAAACCATCCAAAACATTACACATCTTTACTTACATATAACATCTTAAACAACCTCTAAATACAACCCACACCCCTCTCCCCACCCCTTAACTACCCTTCCACACACCCTTCCCTACCAACCCACCCCTACCCTCCCCCTCTTACCACACACCCCACTAAATCTACTCTACCTTAACCTACAACAATACCCAATAACCCAATAACCTCCTTCCTACTAAAGGGCGAATTCGCGGCCGCTAAATTCAATTCGCCCTATAGTGAGTCGTATTACAATTCACTGGCCGTCGTTTTACAACGTCGTGACTGGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCTGGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTATACGTACGGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTACAGAGTGATATTATTGACACGCCGGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGCTGTCAGATAAAGTCTCCCGTGAACTTTACCCGGTGGTGCATATCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAAGAAGTGGCTGATCTCAGCCACCGCGAAAATGACATCAAAAACGCCATTAACCTGATGTTCTGGGGAATATAAATGTCAGGCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTCACGTAGAAAGCCAGTCCGCAGAAACGGTGCTGACCCCGGATGAATGTCAGCTACTGGGCTATCTGGACAAGGGAAAACGCAAGCGCAAAGAGAAAGCAGGTAGCTTGCAGTGGGCTTACATGGCGATAGCTAGACTGGNCCGGTTTTATGGACAGCAAGCGAANCCGGAATTTGCCAGCTGGGGGCGCCNTTCTGGNAANGGTTGGGAANGCCCTGNANNGTAANCTGGNNGGNNTTNNTTGCCNCCNAAGGNATCTNNATGGNNNCNNGGGNNNTCAAGNNNNGNTNCAAGAAANNAGGNATGAAGGATCGGTTNCCNNNTGATTNGANNNAAGATGGGATTGGCANNNCAGGGTTNNCNNGGCCNGCTTGGGNNNGGAANANGNCNNNTTCCGGNNNATNANCTGGGNCNNAANNNNNACAATNCNGGNNTGGCNNNNNANGCCCCCCNNNNNTTCCCNGGNCTNNNCANCNNNNAAGGGGGNCCCCNNGGGTNNNTTNTNGNNNAANNAACCNGANCCNNNNNCCCNGGNNGCCCNTTGAANNNGAANNGNNAAANNNNNANNGGCAANNCCNGGNNNNNNTNCNNNGGNCNNGGNCCCNAAAANNNGGGGGGNNTNNNNTTTNGGGNNNNNNNNNGGNNNNNNNNNNNNNTTTNNNNCNNNNNNNAANNNNNGGNAANNGNNNNNNNNNGGNNNNNNNNNNNTNNGGGGNNNANAAANNTGGCCCNGGGGGNNNNNNNNTNNCCCCNNNGGGGNANNNNNNNNNNNCNNTTGGGNNNNNNNNNNNNNNNNAAAAANNNNNNNNNCNNNNNNNNNNNNGGGGGGNNNNNNNNNNNAANNNNNGNNNGNNNNGGNNNNNNNNNNNNANCCCNNTTTNNNNNNNNNCGGGNNNNNNNNNGNNCCNNTTTNNNTNNCCNNCNNNNNNNNNNGG
";
sqs <- lapply(strsplit(sqs, split=",")[[1]], function(x){
  return(casefold(str2chr(x), upper=TRUE))
  });
batch <- casefold(str2chr("GACATTACACGT"), upper=TRUE);
barlen <- as.integer(8);
side <- "right";
sess <- "RJm4uIoRITeO";
sqlen <- NA;