test.yaml

name: Python package

on:
  push:
    branches:
      - main
  pull_request:
    branches:
      - main

concurrency:
  group: ${{ github.workflow }}-${{ github.ref }}
  cancel-in-progress: true

jobs:
  build:
    # See https://stackoverflow.com/questions/72703363
    defaults:
      run:
        shell: bash -l {0}
    runs-on: ubuntu-latest
    if: ${{ !github.event.pull_request.draft }}

    steps:
      - uses: actions/checkout@v3
        with:
          submodules: 'recursive'
      - name: Get environment.yml
        run: |
          mkdir environments
          wget https://raw.githubusercontent.com/gnn-tracking/gnn_tracking/main/environments/minimal.yml -O environments/minimal.yml
      - name: Install Conda environment from environment.yml
        uses: mamba-org/provision-with-micromamba@main
        with:
          environment-file: environments/minimal.yml
          environment-name: anaconda-client-env
          cache-downloads: true
          cache-env: true
      - name: Pip update itself
        run:
          python -m pip install --upgrade pip
      # Is already in the conda env, so lets be careful
      - name: Pip update gnn_tracking
        run: python -m pip install --upgrade  'gnn_tracking@git+https://github.com/gnn-tracking/gnn_tracking.git#egg=gnn_tracking'
      - name: Pip install package
        run: pip install .[testing]
      - name: Test with pytest
        run: pytest
      - name: Explicitly convert coverage to xml
        run: coverage xml
      - name: Upload coverage report
        uses: codecov/codecov-action@v3.1.4