diff --git a/SingleSampleQc.json b/SingleSampleQc.json index 1cecd03..05ecf9c 100644 --- a/SingleSampleQc.json +++ b/SingleSampleQc.json @@ -1,13 +1,17 @@ { - "WholeGenomeSingleSampleQc.input_bam": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam", - "WholeGenomeSingleSampleQc.input_bam_index": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai", - "WholeGenomeSingleSampleQc.base_name": "NA12878", - "WholeGenomeSingleSampleQc.contamination_sites_ud": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.UD", - "WholeGenomeSingleSampleQc.contamination_sites_bed": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.bed", - "WholeGenomeSingleSampleQc.contamination_sites_mu": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.mu", - "WholeGenomeSingleSampleQc.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict", - "WholeGenomeSingleSampleQc.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta", - "WholeGenomeSingleSampleQc.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai", - "WholeGenomeSingleSampleQc.wgs_coverage_interval_list": "gs://gcp-public-data--broad-references/hg38/v0/wgs_coverage_regions.hg38.interval_list", - "WholeGenomeSingleSampleQc.preemptible_tries": 3 + "SingleSampleQc.input_bam": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam", + "SingleSampleQc.input_bam_index": "gs://genomics-public-data/platinum-genomes/bam/NA12878_S1.bam.bai", + "SingleSampleQc.base_name": "NA12878", + "SingleSampleQc.contamination_sites_ud": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.UD", + "SingleSampleQc.contamination_sites_bed": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.bed", + "SingleSampleQc.contamination_sites_mu": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.contam.mu", + "SingleSampleQc.ref_cache": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.ref_cache.tar.gz", + "SingleSampleQc.ref_dict": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.dict", + "SingleSampleQc.ref_fasta": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta", + "SingleSampleQc.ref_fasta_index": "gs://gcp-public-data--broad-references/hg38/v0/Homo_sapiens_assembly38.fasta.fai", + "SingleSampleQc.coverage_interval_list": "gs://gcp-public-data--broad-references/hg38/v0/wgs_coverage_regions.hg38.interval_list", + "SingleSampleQc.preemptible_tries": 3, + "SingleSampleQc.is_wgs": "true", + "SingleSampleQC.CollectRawWgsMetrics.memory_multiplier": 4, + "SingleSampleQC.CollectHsMetrics.memory_multiplier": 2 }