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Searching on isoforms #42

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pgaudet opened this issue Sep 1, 2022 · 4 comments
Open

Searching on isoforms #42

pgaudet opened this issue Sep 1, 2022 · 4 comments
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enhancement New feature or request

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@pgaudet
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pgaudet commented Sep 1, 2022

Related to #geneontology/neo#102

Swiss-Prot curators propose that when searching on isoforms, the canonical (ie, the one without any hyphens) shows up first. That would avoid many annotation errors, as the most common case is to annotate the canonical isoform.

Thanks, Pascale

@pgaudet pgaudet added the enhancement New feature or request label Sep 1, 2022
@tmushayahama
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Is this more of the backend NEO correct? Do I have to change the GOlr search request

I assume for my interpretation this is like if you search air-2, the actual term is the third one on tis list or it is a diiferent issue
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@kltm @pgaudet @vanaukenk

@pgaudet
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pgaudet commented Jan 31, 2024

I think this is what I meant - to give you an example with a UniProt ID: in this case the correct one is the last one:

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@kltm
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kltm commented Jan 31, 2024

@pgaudet I think this is fine as a feature request, but things like sort and ordering from Solr is part of larger search issues we have. This would probably be binned with a TBD larger project that would run as far back as the loader.

@pgaudet
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pgaudet commented Feb 1, 2024

@kltm this is fine, we (Swiss-Prot curators) just wanted this to be included in some project at some point.

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