diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index adcad51..0288fe2 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -26,4 +26,5 @@ jobs: # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it - uses: actions/checkout@v2 - - run: make test-gha + - name: Create data environment + run: make test-gha diff --git a/Makefile b/Makefile index 7f9915f..c9503bb 100644 --- a/Makefile +++ b/Makefile @@ -1,5 +1,7 @@ OBO = http://purl.obolibrary.org/obo +OWLTOOLS_MEMORY ?= 8G + all: target all_obo neo.obo neo.owl clean: @@ -30,7 +32,7 @@ trigger: IMPORTS = imports/pr_import.obo neo.obo: $(OBO_SRCS) $(IMPORTS) - owltools --create-ontology http://purl.obolibrary.org/obo/go/noctua/neo.owl $^ --merge-support-ontologies -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@ + owltools -Xms$(OWLTOOLS_MEMORY) -Xmx$(OWLTOOLS_MEMORY) --create-ontology http://purl.obolibrary.org/obo/go/noctua/neo.owl $^ --merge-support-ontologies -o -f obo $@.tmp && grep -v ^owl-axioms $@.tmp > $@ ## datasets.json is created as a throwaway in the NEO versions of the ## pipeline and is based on the go-site master data.