produced_by.md

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---------------Text extracted from ontology: DO NOT EDIT---------------

produced_by

• OWL ID: RO_0003001
• label: produced by
• synonyms []

Definition

a produced_by b iff some process that occurs_in b has_output a.

Usage

Use this relation to link a cell component that is the product of a cell, to the cell-type that produced it. Examples include recording the cell type that produces an exosome, an LDL, or a secreted ECM component.

Comment

Subsets

[valid_for_annotation_extension, ro-eco, AE_cell_or_anatomical, display_for_curators]

##local domain {u'GO:0005575': u'cellular_component'}

local range

{u'CL:0000000': u'cell'}

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Annotation Extension Usage Examples

1. Recording the cell type from which a cellular component is derived

Gene Name (col 2)	GO ID (col 5)	Reference (col 6)	Evidence (col 7)	With (col 8)	Annotation Extension (col 16)
URS000015930E_10116	GO:0070062 extracellular exosome	PMID:24743145	ECO:0000314		produced_by(CL:0002548) cardiac fibroblast

Using examples to demonstrate Folding_and_Unfolding using the relationship has_agent

Folded/unfolded	DB (Col 2)	Object (Col 3)	GO ID (Col 5)	Reference (Col 6)	Extension (Col 16)	Parent terms for new folded GO term
Unfolded	RNAcentral	URS000015930E_10116	GO:0070062 extracellular exosome	PMID:24743145	produced_by(CL:0002548) cardiac fibroblast
Folded	RNAcentral	URS000015930E_10116	New GO term: extracellular exosome of cardiac fibroblast	PMID:24743145		is_a GO:0070062 extracellular exosome

OWL class expression:

extracellular exosome and produced_by some 'cardiac fibroblast'

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