- update error messages, to make them less confusing
- take into account run in public PRISM data
- support Duration in old private PRISM data format
- support old private PRISM data format
- fix invalid moa for PRISM data
- synchronize Bioconductor and GitHub versioning
- fix test for
load_files
- fix failing github page
- update function for importing public PRISM data
- fix a bug with incorrect recognition of input file types
- synchronize Bioconductor and GitHub versioning
- move functions for importing PRISM data
- fix typo
- change output of
get_exception_datato data.table
- fix issue with reading tsv files
- clean up the package
- improve pkgdown site
- improved references
- valid NEWS.md
- make documentation compatible with pkdgdown
- add new description fields
- update package vignette
- update validation function used during data submission
- sync main with devel branch
- add "Treatment" as template identifier
- release Bioc 3.18
- prerelease Bioc 3.18
- adjust NEWS to Bioc format
- add functions & unit tests for converting gDR MAE to PSet
- correct plate size calculation
- set barcode as character in the manifest file
- disable support for 'xls' file format due to crashes
- refactor subsetting of data.table using colname
- update warning messages
- add BiocStyle
- add exception entry for invalid average dose-response data
- increase compression level - Tavor_2020.qs; < 5MB limit
- replaced rds with qs
- switch from
mergeto[[
- replaced reshape2 functions by functions from data.table
- format the vignette with BiocStyle
- data.frame => data.table switch - next round of changes
- switch from
tibbletodata.tablein excel files
- refactor tibble, data.frame --> data.table
- switch to OSI license
- clean-up vignette
- add object S4
gdr_test_data
- mocked PSets tests
- add R 4.2 as dependency
- bugfix for Pset-related tests and examples - reset identifiers
- add minor improvements - BiocCheck compatibility
- add support for
PharmacoGx
- update maintainer
- make the package Bioc-compatible
- remove obsolete code
- add tests for check_metadata_names
- add function for detecting format of raw data
- add exceptions for missing drugs' and cell lines' annotations
- make exception tests more robust
- add additional error message for handling data in
gDRin
- add exception table and getter and update exceptions in
load_files.R
- fix bug with reading two untreated templates
- add missing namespace and add unit tests for
correct_template_sheets
- extend logic for correcting template data - II
- extend logic for correcting manifest and template data
- extend the logic for filling empty cols in plate design
- change the logic for identification plates using more versatile solution
- add assert for templates without untreated controls
- reduce warnings and get rid of apply-
- modify the logic for detecting empty columns
- extend the logic for loading EnVision data for other plate size
- add support to load drug doses from D300 .tdd files
- release
- add load_results_Tecan
- add tests for load_results_Tecan
- fix unit tests
- add support for Plate as an equivalent of Barcode
- fix hardcoded identifiers
- update error message for custom column names
- switch from
get_identifiertoget_env_identifiers
- fix wrong argument in
convert_se_assay_to_dt
- 's/assay_to_dt/convert_se_assay_to_dt/' in write_ref_data_se
- fix linter issues
- knitr as Suggested package
- remove nested repo structure
- restore functions for reading reference data
- add unit tests
- add exemplary EnVision data
- move functions related to reading template from gDRcore package
- code refactor using lintr
- initial release - importing fucntions moved from gDRcore package