We read every piece of feedback, and take your input very seriously.
To see all available qualifiers, see our documentation.
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
So, although this is unlikely to happen, here it goes:
This works:
library(future) plan(future.batchtools::batchtools_local) options(future.debug = TRUE) f <- future(42)
But not this:
library(future) loadNamespace("BatchJobs") plan(future.batchtools::batchtools_local) options(future.debug = TRUE) f <- future(42)
which gives:
[12:10:52.163] getGlobalsAndPackages() ... [12:10:52.164] Searching for globals... [12:10:52.165] [12:10:52.166] Searching for globals ... DONE [12:10:52.166] - globals: [0] <none> [12:10:52.166] getGlobalsAndPackages() ... DONE No readable configuration file found Created registry in '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_978006181' using cluster functions 'Interactive' Error in dbDoQuery(reg, query) : Error while etablishing the connection: Error in do.call(reg$db.driver, list()) : 'what' must be a function or character string [12:10:52.431] batchtools::waitForJobs() ... [12:10:52.447] - batchtools::waitForJobs(): TRUE [12:10:52.461] - status(): 'defined', 'finished', 'started', 'submitted' [12:10:52.462] batchtools::waitForJobs() ... done [12:10:52.462] Results: [12:10:52.484] List of 7 [12:10:52.484] $ value : num 42 [12:10:52.484] $ stdout : chr "" [12:10:52.484] $ conditions : list() [12:10:52.484] $ started : POSIXct[1:1], format: "2019-06-22 12:10:09" [12:10:52.484] $ finished : POSIXct[1:1], format: "2019-06-22 12:10:09" [12:10:52.484] $ version : chr "1.8" [12:10:52.484] $ batchtools_log: chr [1:9] "### [bt]: This is batchtools v0.9.11" "### [bt]: Starting calculation of 1 jobs" "### [bt]: Setting working directory to '/home/hb/repositories/future.batchtools'" "### [bt]: Memory measurement disabled" ... [12:10:52.484] - attr(*, "class")= chr "FutureResult" [12:10:52.497] delete(): Option 'future.delete = '<NULL>' Removing 1 jobs ... Removing user function ... Removing 1 obsolete result files ... Removing 1 obsolete log files ... Recursively removing files in '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_607848383' ... [12:10:52.543] delete(): batchtools registry deleted: '/home/hb/repositories/future.batchtools/.future/20190622_121007-qn0hej/batchtools_607848383' Enter a frame number, or 0 to exit 1: future(42) 2: .makeFuture(expr, substitute = FALSE, envir = envir, globals = globals, pac 3: makeFuture(...) 4: BatchtoolsFuture(expr = expr, envir = envir, substitute = FALSE, globals = 5: mprint(reg) 6: message(paste(now(), capture.output(print(...)), sep = "", collapse = "\n") 7: paste(now(), capture.output(print(...)), sep = "", collapse = "\n") 8: capture.output(print(...)) 9: evalVis(expr) 10: withVisible(eval(expr, pf)) 11: eval(expr, pf) 12: eval(expr, pf) 13: print(...) 14: print.Registry(...) 15: cat(" Number of jobs: ", dbGetJobCount(x), "\n") 16: dbGetJobCount(x) 17: dbDoQuery(reg, query) 18: stopf("Error while etablishing the connection: %s", as.character(con)) 19: stop(obj) 20: (function () { replicate(sink.number(), sink(NULL)) if (interactiv
The text was updated successfully, but these errors were encountered:
No branches or pull requests
So, although this is unlikely to happen, here it goes:
This works:
But not this:
which gives:
The text was updated successfully, but these errors were encountered: