config-multipleMCODE.yml

# Whether to ignore non-FHIR fixtures
nonfhir_fixture: true

# Endpoint against which TestScripts will be executed
server_url: https://hapi.fhir.org/baseR4

# The relative path to the directory containing the TestScript resources (as JSON or XML) to be executed by the engine
testscript_path: "TestScripts/multipleMCODE"
 
# Name of TestScript under TESTSCRIPT_PATH to be executed
# If empty, all files under TESTSCRIPT_PATH will be executed
testscript_name:

# Dynamic variables will replace defaultValue in variable in TestScript
# Dynamic variables uniformly apply to all runnables. For example, if two TestScripts have same variable names, dynamic variable will apply to both of them.
# Example: PatientResourceId1=var1changed
variable: 
  - targetResourceIdCancerDiseaseStatus=cancer-disease-status-jenny-m
  - targetResourceIdCancerPatient=cancer-patient-jenny-m
  - targetResourceIdCancerRelatedMedicationAdministration=TODO
  - targetResourceIdCancerRelatedMedicationRequest=cancer-related-medication-request-paclitaxel-jenny-m
  - targetResourceIdCancerRelatedSurgicalProcedure=cancer-related-surgical-procedure-jenny-m
  - targetResourceIdCancerStageGroup=TODO
  - targetResourceIdComorbidities=cancer-related-comorbidities-jenny-m
  - targetResourceIdECOGPerformanceStatus=ecog-performance-status-jenny-m
  - targetResourceIdGenomicRegionStudied=genomic-region-studied-jenny-m
  - targetResourceIdGenomicsReport=genomics-report-jenny-m
  - targetResourceIdGenomicVariant=genomic-variant-jenny-m
  - targetResourceIdHumanSpecimen=tumor-specimen-left-breast-jenny-m
  - targetResourceIdKarnofskyPerformanceStatus=TODO
  - targetResourceIdMCODEPatientBundle=TODO
  - targetResourceIdMCODEPatientGroup=TODO
  - targetResourceIdPrimaryCancerCondition=primary-cancer-condition-jenny-m
  - targetResourceIdRadiotherapyCourseSummary=radiotherapy-treatment-summary-chest-wall-jenny-m
  - targetResourceIdRadiotherapyVolume=TODO
  - targetResourceIdSecondaryCancerCondition=TODO
  - targetResourceIdTNMDistantMetastasesCategory=tnm-clinical-distant-metastases-category-jenny-m
  - targetResourceIdTNMPrimaryTumorCategory=tnm-clinical-primary-tumor-category-jenny-m
  - targetResourceIdTNMRegionalNodesCategory=tnm-pathologic-regional-nodes-category-jenny-m
  - targetResourceIdTNMStageGroup=tnm-clinical-stage-group-jenny-m
  - targetResourceIdTumorMarkerTest=tumor-marker-test-er-jenny-m
  - targetResourceIdTumor=TODO
  - targetResourceIdTumorSize=tumor-size-jenny-m

# The relative to the directory containing the TestReports output following their partner TestScript execution
# Files containing TestReport instances will be placed in a subfolder corresponding to the execution completion time
testreport_path: "TestReports"

# If specified, a summary report csv file named execution_summary_[timestamp].csv will be created within the specified relative folder
# The file will include the id, name, and title of each TestScript executed along with the overall pass/fail result and the file containing the TestReport with details
summary_path: "TestReports"

# Whether use FHIR logger
verbose: false

# If specified, the url where the external validator can be reached. If not use the internal validator
# Resource validator options:
# - "internal" uses the ruby validator from the fhir_models gem
#   https://github.com/fhir-crucible/fhir_models
# - "external" uses the a web interface for the HL7 FHIR validator.
#   https://github.com/inferno-community/fhir-validator-wrapper
ext_validator: http://inferno.healthit.gov/validatorapi

# If specified, the url where the external fhirpath will be used. If not use the internal fhirpath.
ext_fhirpath: 

# List of locations holding profile StructureDefinitions to be used for profile validation
# May be a web url, a relative file, or a relative directory (profiles in sub-directories not included)
# StructureDefinitions loaded from this configuration setting take precedence over StructureDefinitions 
# accessed from canonical URLs in TestScripts that resolve to StructureDefinitions. 
# This allows for validation against unpublished versions of profiles.
profile:
  - Profiles/mCODE