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ChangeLog.md

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##v 2.1

  • All species support for both dricARF and dripARF.
  • New functions for PDB parsing and lift-overing; ARF_parse_PDB_ribosome(), ARF_convert_Ribo3D_pos(), dripARF_get_RP_proximity_sets(), and dricARF_liftover_collision_sets().
  • dricARF output figure updated.

##v 2.0

  • Integrating 3D ribosome structure analysis to ARF
  • All relevant functions now require the rRNA fasta file that is used for mapping.
  • First release of dricARF - Differential Ribosome Collision Prediction pipeline
  • Bug fixes (closing issues until now)

##v 1.0

  • Publication release
  • A few bug fixes

##v 0.9.1 - 2022-04-14

  • Paper revision release
  • rRNA-RP contact point distance threshold changed
  • New experimental function that allows altering the Contact Point threshold and possible directionality in predictions
  • A few technical updates
  • RP-rRNA distance matrices are added to the repo

##v 0.9 - 2021-11-26

  • First release
  • Paper submission version