diff --git a/.github/workflows/tests-tox.yaml b/.github/workflows/tests-tox.yaml index f011d89c..d389fe71 100644 --- a/.github/workflows/tests-tox.yaml +++ b/.github/workflows/tests-tox.yaml @@ -49,6 +49,7 @@ jobs: - name: Install Mac OS dependencies if: runner.os == 'macOS' run: | + brew install r Rscript --no-environ -e "install.packages('BiocManager', repos='https://cloud.r-project.org'); BiocManager::install('DNAcopy')" - name: Install test runner tools run: pip install flake8 pytest tox diff --git a/conda-env.yml b/conda-env.yml index edd3998a..f18b9936 100644 --- a/conda-env.yml +++ b/conda-env.yml @@ -17,7 +17,7 @@ dependencies: - matplotlib >=3.5.2 - numpy >=1.24.2 - pandas >=1.5.3 - - pomegranate >=0.14.8, <=0.14.9 + - pomegranate >=0.14.8, <1.0.0 - pyfaidx >=0.7.1 - pysam >=0.20.0 - pytest diff --git a/devtools/conda-recipe/meta.yaml b/devtools/conda-recipe/meta.yaml index 61527463..15ecbf1b 100644 --- a/devtools/conda-recipe/meta.yaml +++ b/devtools/conda-recipe/meta.yaml @@ -22,7 +22,7 @@ requirements: - matplotlib >=3.5.2 - numpy >=1.24.2 - pandas >=1.5.3 - - pomegranate >=0.14.8, <=0.14.9 + - pomegranate >=0.14.8, <1.0.0 - pyfaidx >=0.7.1 - pysam >=0.20.0 - reportlab >=3.6.12 diff --git a/requirements/core.txt b/requirements/core.txt index 3c881536..e6684f63 100644 --- a/requirements/core.txt +++ b/requirements/core.txt @@ -2,7 +2,7 @@ biopython >= 1.80 matplotlib >= 3.5.2 numpy >= 1.24.2 pandas >= 1.5.3 -pomegranate >=0.14.8, <=0.14.9 +pomegranate >=0.14.8, <1.0.0 pyfaidx >= 0.7.1 pysam >= 0.20.0 reportlab >= 3.6.12