diff --git a/ERF_8H_source.html b/ERF_8H_source.html
index 189195121..c1b6ec8e7 100644
--- a/ERF_8H_source.html
+++ b/ERF_8H_source.html
@@ -1547,7 +1547,7 @@
 <div class="ttc" id="aERF__WindFarm_8H_html"><div class="ttname"><a href="ERF__WindFarm_8H.html">ERF_WindFarm.H</a></div></div>
 <div class="ttc" id="aERF__WriteBndryPlanes_8H_html"><div class="ttname"><a href="ERF__WriteBndryPlanes_8H.html">ERF_WriteBndryPlanes.H</a></div></div>
 <div class="ttc" id="aclassERF_html"><div class="ttname"><a href="classERF.html">ERF</a></div><div class="ttdef"><b>Definition:</b> ERF.H:124</div></div>
-<div class="ttc" id="aclassERF_html_a01987b2556834788694f2f3741a2afe4"><div class="ttname"><a href="classERF.html#a01987b2556834788694f2f3741a2afe4">ERF::MakeHorizontalAverages</a></div><div class="ttdeci">void MakeHorizontalAverages()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1724</div></div>
+<div class="ttc" id="aclassERF_html_a01987b2556834788694f2f3741a2afe4"><div class="ttname"><a href="classERF.html#a01987b2556834788694f2f3741a2afe4">ERF::MakeHorizontalAverages</a></div><div class="ttdeci">void MakeHorizontalAverages()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1741</div></div>
 <div class="ttc" id="aclassERF_html_a01f3db32272f53dc68025f0a98195e57"><div class="ttname"><a href="classERF.html#a01f3db32272f53dc68025f0a98195e57">ERF::rU_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; rU_new</div><div class="ttdef"><b>Definition:</b> ERF.H:758</div></div>
 <div class="ttc" id="aclassERF_html_a02722d16f3c26efe590702200f1296d7"><div class="ttname"><a href="classERF.html#a02722d16f3c26efe590702200f1296d7">ERF::last_check_file_step</a></div><div class="ttdeci">int last_check_file_step</div><div class="ttdef"><b>Definition:</b> ERF.H:910</div></div>
 <div class="ttc" id="aclassERF_html_a0276b556fdefec8b99be95846a3a35fe"><div class="ttname"><a href="classERF.html#a0276b556fdefec8b99be95846a3a35fe">ERF::walldist</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; walldist</div><div class="ttdef"><b>Definition:</b> ERF.H:855</div></div>
@@ -1606,7 +1606,7 @@
 <div class="ttc" id="aclassERF_html_a2b0085123e02051ac4c2a72e9972e6ee"><div class="ttname"><a href="classERF.html#a2b0085123e02051ac4c2a72e9972e6ee">ERF::d_havg_qv</a></div><div class="ttdeci">amrex::Gpu::DeviceVector&lt; amrex::Real &gt; d_havg_qv</div><div class="ttdef"><b>Definition:</b> ERF.H:1158</div></div>
 <div class="ttc" id="aclassERF_html_a2b911f3a5a324813b1ff4462df6044a6"><div class="ttname"><a href="classERF.html#a2b911f3a5a324813b1ff4462df6044a6">ERF::column_loc_y</a></div><div class="ttdeci">static amrex::Real column_loc_y</div><div class="ttdef"><b>Definition:</b> ERF.H:1097</div></div>
 <div class="ttc" id="aclassERF_html_a2c4e27d6b7928c7081f17e63d0834200"><div class="ttname"><a href="classERF.html#a2c4e27d6b7928c7081f17e63d0834200">ERF::mg_verbose</a></div><div class="ttdeci">static int mg_verbose</div><div class="ttdef"><b>Definition:</b> ERF.H:1043</div></div>
-<div class="ttc" id="aclassERF_html_a2d39cd3bdc3d90609ad3b14e266d190a"><div class="ttname"><a href="classERF.html#a2d39cd3bdc3d90609ad3b14e266d190a">ERF::ReadParameters</a></div><div class="ttdeci">void ReadParameters()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1377</div></div>
+<div class="ttc" id="aclassERF_html_a2d39cd3bdc3d90609ad3b14e266d190a"><div class="ttname"><a href="classERF.html#a2d39cd3bdc3d90609ad3b14e266d190a">ERF::ReadParameters</a></div><div class="ttdeci">void ReadParameters()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1394</div></div>
 <div class="ttc" id="aclassERF_html_a2dcd22cb915d923c687f60267f44542b"><div class="ttname"><a href="classERF.html#a2dcd22cb915d923c687f60267f44542b">ERF::PlotFileVarNames</a></div><div class="ttdeci">static amrex::Vector&lt; std::string &gt; PlotFileVarNames(amrex::Vector&lt; std::string &gt; plot_var_names)</div><div class="ttdef"><b>Definition:</b> ERF_Plotfile.cpp:174</div></div>
 <div class="ttc" id="aclassERF_html_a2e1874d47d95c7c858c2a2336fd0eee6"><div class="ttname"><a href="classERF.html#a2e1874d47d95c7c858c2a2336fd0eee6">ERF::InitializeFromFile</a></div><div class="ttdeci">void InitializeFromFile()</div></div>
 <div class="ttc" id="aclassERF_html_a2e9b04043853d25f2d76edbc0bed2e72"><div class="ttname"><a href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72">ERF::physbcs_cons</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; ERFPhysBCFunct_cons &gt; &gt; physbcs_cons</div><div class="ttdef"><b>Definition:</b> ERF.H:745</div></div>
@@ -1642,7 +1642,7 @@
 <div class="ttc" id="aclassERF_html_a405556a52bef334ab68294c1a540e107"><div class="ttname"><a href="classERF.html#a405556a52bef334ab68294c1a540e107">ERF::stop_time</a></div><div class="ttdeci">amrex::Real stop_time</div><div class="ttdef"><b>Definition:</b> ERF.H:919</div></div>
 <div class="ttc" id="aclassERF_html_a41324a4b5610fde725fe721550b23c85"><div class="ttname"><a href="classERF.html#a41324a4b5610fde725fe721550b23c85">ERF::NumSamplePointLogs</a></div><div class="ttdeci">AMREX_FORCE_INLINE int NumSamplePointLogs() noexcept</div><div class="ttdef"><b>Definition:</b> ERF.H:1259</div></div>
 <div class="ttc" id="aclassERF_html_a413293737b0021c97b50c62756561446"><div class="ttname"><a href="classERF.html#a413293737b0021c97b50c62756561446">ERF::h_havg_pressure</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; h_havg_pressure</div><div class="ttdef"><b>Definition:</b> ERF.H:1151</div></div>
-<div class="ttc" id="aclassERF_html_a419510fced05e9afc05c466beeeb66f7"><div class="ttname"><a href="classERF.html#a419510fced05e9afc05c466beeeb66f7">ERF::update_diffusive_arrays</a></div><div class="ttdeci">void update_diffusive_arrays(int lev, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:382</div></div>
+<div class="ttc" id="aclassERF_html_a419510fced05e9afc05c466beeeb66f7"><div class="ttname"><a href="classERF.html#a419510fced05e9afc05c466beeeb66f7">ERF::update_diffusive_arrays</a></div><div class="ttdeci">void update_diffusive_arrays(int lev, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:380</div></div>
 <div class="ttc" id="aclassERF_html_a43d0b17f6e155691a1e9474526df3af5"><div class="ttname"><a href="classERF.html#a43d0b17f6e155691a1e9474526df3af5">ERF::verbose</a></div><div class="ttdeci">static int verbose</div><div class="ttdef"><b>Definition:</b> ERF.H:1042</div></div>
 <div class="ttc" id="aclassERF_html_a45233bcc95ac50c112b7146595164a8d"><div class="ttname"><a href="classERF.html#a45233bcc95ac50c112b7146595164a8d">ERF::h_havg_qc</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; h_havg_qc</div><div class="ttdef"><b>Definition:</b> ERF.H:1153</div></div>
 <div class="ttc" id="aclassERF_html_a45c8ecd777f47732993777a0afb8e140"><div class="ttname"><a href="classERF.html#a45c8ecd777f47732993777a0afb8e140">ERF::physbcs_w</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; ERFPhysBCFunct_w &gt; &gt; physbcs_w</div><div class="ttdef"><b>Definition:</b> ERF.H:748</div></div>
@@ -1661,7 +1661,7 @@
 <div class="ttc" id="aclassERF_html_a521d1faf157e3bccc86c0f26ee923576"><div class="ttname"><a href="classERF.html#a521d1faf157e3bccc86c0f26ee923576">ERF::Qv_prim</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; Qv_prim</div><div class="ttdef"><b>Definition:</b> ERF.H:753</div></div>
 <div class="ttc" id="aclassERF_html_a5232e98479611a24fe97994640c61faa"><div class="ttname"><a href="classERF.html#a5232e98479611a24fe97994640c61faa">ERF::sum_interval</a></div><div class="ttdeci">static int sum_interval</div><div class="ttdef"><b>Definition:</b> ERF.H:1047</div></div>
 <div class="ttc" id="aclassERF_html_a52761522e295887435c10853d8c7dc37"><div class="ttname"><a href="classERF.html#a52761522e295887435c10853d8c7dc37">ERF::pert_interval</a></div><div class="ttdeci">static int pert_interval</div><div class="ttdef"><b>Definition:</b> ERF.H:1048</div></div>
-<div class="ttc" id="aclassERF_html_a530d2ce59e6fd46e9fb00e4d11eaf737"><div class="ttname"><a href="classERF.html#a530d2ce59e6fd46e9fb00e4d11eaf737">ERF::restart</a></div><div class="ttdeci">void restart()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1234</div></div>
+<div class="ttc" id="aclassERF_html_a530d2ce59e6fd46e9fb00e4d11eaf737"><div class="ttname"><a href="classERF.html#a530d2ce59e6fd46e9fb00e4d11eaf737">ERF::restart</a></div><div class="ttdeci">void restart()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1251</div></div>
 <div class="ttc" id="aclassERF_html_a5392e6104804d799b3fd943dfe390766"><div class="ttname"><a href="classERF.html#a5392e6104804d799b3fd943dfe390766">ERF::Tau13_lev</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; Tau13_lev</div><div class="ttdef"><b>Definition:</b> ERF.H:810</div></div>
 <div class="ttc" id="aclassERF_html_a53fab1172ec3f01356355f8cda0919fe"><div class="ttname"><a href="classERF.html#a53fab1172ec3f01356355f8cda0919fe">ERF::SFS_q1fx2_lev</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; SFS_q1fx2_lev</div><div class="ttdef"><b>Definition:</b> ERF.H:822</div></div>
 <div class="ttc" id="aclassERF_html_a53fbe0d6ca7ba034c618eb7052ed9771"><div class="ttname"><a href="classERF.html#a53fbe0d6ca7ba034c618eb7052ed9771">ERF::ReadCheckpointFileMOST</a></div><div class="ttdeci">void ReadCheckpointFileMOST()</div><div class="ttdef"><b>Definition:</b> ERF_Checkpoint.cpp:627</div></div>
@@ -1671,7 +1671,7 @@
 <div class="ttc" id="aclassERF_html_a54e37988486ef96e55e84bd8e91bb688"><div class="ttname"><a href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">ERF::rV_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; rV_new</div><div class="ttdef"><b>Definition:</b> ERF.H:760</div></div>
 <div class="ttc" id="aclassERF_html_a54f6c5d799e51521ad10bb57d29d0c44"><div class="ttname"><a href="classERF.html#a54f6c5d799e51521ad10bb57d29d0c44">ERF::PlotFileName</a></div><div class="ttdeci">std::string PlotFileName(int lev) const</div></div>
 <div class="ttc" id="aclassERF_html_a55eae94c5363e227b571739738bb26b7"><div class="ttname"><a href="classERF.html#a55eae94c5363e227b571739738bb26b7">ERF::write_1D_profiles</a></div><div class="ttdeci">void write_1D_profiles(amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_Write1DProfiles.cpp:15</div></div>
-<div class="ttc" id="aclassERF_html_a5600f8ce250d4811012719fdf5e85f00"><div class="ttname"><a href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">ERF::initialize_integrator</a></div><div class="ttdeci">void initialize_integrator(int lev, amrex::MultiFab &amp;cons_mf, amrex::MultiFab &amp;vel_mf)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:590</div></div>
+<div class="ttc" id="aclassERF_html_a5600f8ce250d4811012719fdf5e85f00"><div class="ttname"><a href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">ERF::initialize_integrator</a></div><div class="ttdeci">void initialize_integrator(int lev, amrex::MultiFab &amp;cons_mf, amrex::MultiFab &amp;vel_mf)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:588</div></div>
 <div class="ttc" id="aclassERF_html_a56a23d298bc66218bf257d0e793e341f"><div class="ttname"><a href="classERF.html#a56a23d298bc66218bf257d0e793e341f">ERF::thin_zforce</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; thin_zforce</div><div class="ttdef"><b>Definition:</b> ERF.H:905</div></div>
 <div class="ttc" id="aclassERF_html_a56ae431ddda8577a797dd939e53a593a"><div class="ttname"><a href="classERF.html#a56ae431ddda8577a797dd939e53a593a">ERF::init_type</a></div><div class="ttdeci">static InitType init_type</div><div class="ttdef"><b>Definition:</b> ERF.H:1055</div></div>
 <div class="ttc" id="aclassERF_html_a574521986a6e403159f83c8b8123ba90"><div class="ttname"><a href="classERF.html#a574521986a6e403159f83c8b8123ba90">ERF::domain_bcs_type</a></div><div class="ttdeci">amrex::Vector&lt; amrex::BCRec &gt; domain_bcs_type</div><div class="ttdef"><b>Definition:</b> ERF.H:881</div></div>
@@ -1702,7 +1702,7 @@
 <div class="ttc" id="aclassERF_html_a6600f30f1043a4c5e62b5cdd05f0a99f"><div class="ttname"><a href="classERF.html#a6600f30f1043a4c5e62b5cdd05f0a99f">ERF::stretched_dz_d</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; stretched_dz_d</div><div class="ttdef"><b>Definition:</b> ERF.H:863</div></div>
 <div class="ttc" id="aclassERF_html_a6837423e9248e923fcaa1987b59d8160"><div class="ttname"><a href="classERF.html#a6837423e9248e923fcaa1987b59d8160">ERF::t_avg_cnt</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; t_avg_cnt</div><div class="ttdef"><b>Definition:</b> ERF.H:738</div></div>
 <div class="ttc" id="aclassERF_html_a6865cf87abbb5aab0db00ff3b1ce94ac"><div class="ttname"><a href="classERF.html#a6865cf87abbb5aab0db00ff3b1ce94ac">ERF::plot_var_names_1</a></div><div class="ttdeci">amrex::Vector&lt; std::string &gt; plot_var_names_1</div><div class="ttdef"><b>Definition:</b> ERF.H:962</div></div>
-<div class="ttc" id="aclassERF_html_a691172d44ab3e8b4d6fb18c068cc1ab4"><div class="ttname"><a href="classERF.html#a691172d44ab3e8b4d6fb18c068cc1ab4">ERF::remake_zphys</a></div><div class="ttdeci">void remake_zphys(int lev, amrex::Real time, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;temp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:544</div></div>
+<div class="ttc" id="aclassERF_html_a691172d44ab3e8b4d6fb18c068cc1ab4"><div class="ttname"><a href="classERF.html#a691172d44ab3e8b4d6fb18c068cc1ab4">ERF::remake_zphys</a></div><div class="ttdeci">void remake_zphys(int lev, amrex::Real time, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;temp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:542</div></div>
 <div class="ttc" id="aclassERF_html_a69a3f925e95ec4244b0257f9de16d65a"><div class="ttname"><a href="classERF.html#a69a3f925e95ec4244b0257f9de16d65a">ERF::m_check_int</a></div><div class="ttdeci">int m_check_int</div><div class="ttdef"><b>Definition:</b> ERF.H:959</div></div>
 <div class="ttc" id="aclassERF_html_a6b1d727e63de2e49aa4f8e00b0dda1d5"><div class="ttname"><a href="classERF.html#a6b1d727e63de2e49aa4f8e00b0dda1d5">ERF::estTimeStep</a></div><div class="ttdeci">amrex::Real estTimeStep(int lev, long &amp;dt_fast_ratio) const</div><div class="ttdef"><b>Definition:</b> ERF_ComputeTimestep.cpp:55</div></div>
 <div class="ttc" id="aclassERF_html_a6c570cbcb63ba3b0b09557537310ea46"><div class="ttname"><a href="classERF.html#a6c570cbcb63ba3b0b09557537310ea46">ERF::sponge_type</a></div><div class="ttdeci">static std::string sponge_type</div><div class="ttdef"><b>Definition:</b> ERF.H:1059</div></div>
@@ -1723,11 +1723,11 @@
 <div class="ttc" id="aclassERF_html_a7c448670f7a5cadd6fe56f7e615c9eb6"><div class="ttname"><a href="classERF.html#a7c448670f7a5cadd6fe56f7e615c9eb6">ERF::output_bndry_planes</a></div><div class="ttdeci">static int output_bndry_planes</div><div class="ttdef"><b>Definition:</b> ERF.H:1101</div></div>
 <div class="ttc" id="aclassERF_html_a7d245afb7b3236b5967902f50bf9000b"><div class="ttname"><a href="classERF.html#a7d245afb7b3236b5967902f50bf9000b">ERF::d_v_geos</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_v_geos</div><div class="ttdef"><b>Definition:</b> ERF.H:1126</div></div>
 <div class="ttc" id="aclassERF_html_a7d54d3f2317d06a8dfcde4f65cfc3e92"><div class="ttname"><a href="classERF.html#a7d54d3f2317d06a8dfcde4f65cfc3e92">ERF::last_plot_file_step_1</a></div><div class="ttdeci">int last_plot_file_step_1</div><div class="ttdef"><b>Definition:</b> ERF.H:907</div></div>
-<div class="ttc" id="aclassERF_html_a7dba7f9e6bd3f6898fac9ac2efcec692"><div class="ttname"><a href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">ERF::update_terrain_arrays</a></div><div class="ttdeci">void update_terrain_arrays(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:579</div></div>
+<div class="ttc" id="aclassERF_html_a7dba7f9e6bd3f6898fac9ac2efcec692"><div class="ttname"><a href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">ERF::update_terrain_arrays</a></div><div class="ttdeci">void update_terrain_arrays(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:577</div></div>
 <div class="ttc" id="aclassERF_html_a7e9040f32464f1a6dee6e0384393451d"><div class="ttname"><a href="classERF.html#a7e9040f32464f1a6dee6e0384393451d">ERF::nc_bdy_file</a></div><div class="ttdeci">static std::string nc_bdy_file</div><div class="ttdef"><b>Definition:</b> ERF.H:1069</div></div>
 <div class="ttc" id="aclassERF_html_a7eac012575590fe374a8d4b5d9061546"><div class="ttname"><a href="classERF.html#a7eac012575590fe374a8d4b5d9061546">ERF::metgrid_interp_theta</a></div><div class="ttdeci">bool metgrid_interp_theta</div><div class="ttdef"><b>Definition:</b> ERF.H:1083</div></div>
 <div class="ttc" id="aclassERF_html_a7ef14f6028b577eba70aef46b508be19"><div class="ttname"><a href="classERF.html#a7ef14f6028b577eba70aef46b508be19">ERF::nc_init_file</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::Vector&lt; std::string &gt; &gt; nc_init_file</div><div class="ttdef"><b>Definition:</b> ERF.H:1066</div></div>
-<div class="ttc" id="aclassERF_html_a80981e20939a6a38ba17478da2253ff1"><div class="ttname"><a href="classERF.html#a80981e20939a6a38ba17478da2253ff1">ERF::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1265</div></div>
+<div class="ttc" id="aclassERF_html_a80981e20939a6a38ba17478da2253ff1"><div class="ttname"><a href="classERF.html#a80981e20939a6a38ba17478da2253ff1">ERF::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1282</div></div>
 <div class="ttc" id="aclassERF_html_a80ad08512968ec45635df68abe66b1fc"><div class="ttname"><a href="classERF.html#a80ad08512968ec45635df68abe66b1fc">ERF::input_bndry_planes</a></div><div class="ttdeci">static int input_bndry_planes</div><div class="ttdef"><b>Definition:</b> ERF.H:1107</div></div>
 <div class="ttc" id="aclassERF_html_a812912653fe0d8ab1342bfef4793dd0e"><div class="ttname"><a href="classERF.html#a812912653fe0d8ab1342bfef4793dd0e">ERF::interpolation_type</a></div><div class="ttdeci">static StateInterpType interpolation_type</div><div class="ttdef"><b>Definition:</b> ERF.H:1056</div></div>
 <div class="ttc" id="aclassERF_html_a8199cc1ec38b9dfd47262ccc7df6a941"><div class="ttname"><a href="classERF.html#a8199cc1ec38b9dfd47262ccc7df6a941">ERF::d_havg_qc</a></div><div class="ttdeci">amrex::Gpu::DeviceVector&lt; amrex::Real &gt; d_havg_qc</div><div class="ttdef"><b>Definition:</b> ERF.H:1159</div></div>
@@ -1757,7 +1757,7 @@
 <div class="ttc" id="aclassERF_html_a8cb877a46fd94b5294425299dcb9cbaf"><div class="ttname"><a href="classERF.html#a8cb877a46fd94b5294425299dcb9cbaf">ERF::input_sponge_data</a></div><div class="ttdeci">InputSpongeData input_sponge_data</div><div class="ttdef"><b>Definition:</b> ERF.H:687</div></div>
 <div class="ttc" id="aclassERF_html_a8e758060d3dede9694fbfcabddc17169"><div class="ttname"><a href="classERF.html#a8e758060d3dede9694fbfcabddc17169">ERF::restart_chkfile</a></div><div class="ttdeci">std::string restart_chkfile</div><div class="ttdef"><b>Definition:</b> ERF.H:922</div></div>
 <div class="ttc" id="aclassERF_html_a8eb60483e48302db4706d3b90c0ae8e4"><div class="ttname"><a href="classERF.html#a8eb60483e48302db4706d3b90c0ae8e4">ERF::metgrid_use_below_sfc</a></div><div class="ttdeci">bool metgrid_use_below_sfc</div><div class="ttdef"><b>Definition:</b> ERF.H:1085</div></div>
-<div class="ttc" id="aclassERF_html_a8f50cd1ba85fbf9ae0579a56ba06eb1b"><div class="ttname"><a href="classERF.html#a8f50cd1ba85fbf9ae0579a56ba06eb1b">ERF::init_zphys</a></div><div class="ttdeci">void init_zphys(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:473</div></div>
+<div class="ttc" id="aclassERF_html_a8f50cd1ba85fbf9ae0579a56ba06eb1b"><div class="ttname"><a href="classERF.html#a8f50cd1ba85fbf9ae0579a56ba06eb1b">ERF::init_zphys</a></div><div class="ttdeci">void init_zphys(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:471</div></div>
 <div class="ttc" id="aclassERF_html_a8fbfa8bb47c0a3b53e244081aa1e8ad3"><div class="ttname"><a href="classERF.html#a8fbfa8bb47c0a3b53e244081aa1e8ad3">ERF::sampleptlogname</a></div><div class="ttdeci">amrex::Vector&lt; std::string &gt; sampleptlogname</div><div class="ttdef"><b>Definition:</b> ERF.H:1378</div></div>
 <div class="ttc" id="aclassERF_html_a902f60d94be5eaf86361d1d5ad942105"><div class="ttname"><a href="classERF.html#a902f60d94be5eaf86361d1d5ad942105">ERF::xvel_bc_data</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; xvel_bc_data</div><div class="ttdef"><b>Definition:</b> ERF.H:690</div></div>
 <div class="ttc" id="aclassERF_html_a9084860e0049795487636a9e0ccbc89e"><div class="ttname"><a href="classERF.html#a9084860e0049795487636a9e0ccbc89e">ERF::InitData_pre</a></div><div class="ttdeci">void InitData_pre()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:615</div></div>
@@ -1771,7 +1771,7 @@
 <div class="ttc" id="aclassERF_html_a930b7d48218b3fc41d8719b50b3f6086"><div class="ttname"><a href="classERF.html#a930b7d48218b3fc41d8719b50b3f6086">ERF::column_loc_x</a></div><div class="ttdeci">static amrex::Real column_loc_x</div><div class="ttdef"><b>Definition:</b> ERF.H:1096</div></div>
 <div class="ttc" id="aclassERF_html_a93bc9185c89cbeaceffaf40b8cf4a75c"><div class="ttname"><a href="classERF.html#a93bc9185c89cbeaceffaf40b8cf4a75c">ERF::ax</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; ax</div><div class="ttdef"><b>Definition:</b> ERF.H:833</div></div>
 <div class="ttc" id="aclassERF_html_a93e63e5af35efa564fd4195e8703f84c"><div class="ttname"><a href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">ERF::z_phys_nd</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; z_phys_nd</div><div class="ttdef"><b>Definition:</b> ERF.H:829</div></div>
-<div class="ttc" id="aclassERF_html_a93ed2dd2c2441da6853d6f48b6467324"><div class="ttname"><a href="classERF.html#a93ed2dd2c2441da6853d6f48b6467324">ERF::MakeDiagnosticAverage</a></div><div class="ttdeci">void MakeDiagnosticAverage(amrex::Vector&lt; amrex::Real &gt; &amp;h_havg, amrex::MultiFab &amp;S, int n)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1830</div></div>
+<div class="ttc" id="aclassERF_html_a93ed2dd2c2441da6853d6f48b6467324"><div class="ttname"><a href="classERF.html#a93ed2dd2c2441da6853d6f48b6467324">ERF::MakeDiagnosticAverage</a></div><div class="ttdeci">void MakeDiagnosticAverage(amrex::Vector&lt; amrex::Real &gt; &amp;h_havg, amrex::MultiFab &amp;S, int n)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1847</div></div>
 <div class="ttc" id="aclassERF_html_a95182a17e10556dde659d4dd891a4ed3"><div class="ttname"><a href="classERF.html#a95182a17e10556dde659d4dd891a4ed3">ERF::metgrid_proximity</a></div><div class="ttdeci">amrex::Real metgrid_proximity</div><div class="ttdef"><b>Definition:</b> ERF.H:1088</div></div>
 <div class="ttc" id="aclassERF_html_a9683c7b07c287e57856ee5a9c99917a1"><div class="ttname"><a href="classERF.html#a9683c7b07c287e57856ee5a9c99917a1">ERF::h_havg_temperature</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Real &gt; h_havg_temperature</div><div class="ttdef"><b>Definition:</b> ERF.H:1150</div></div>
 <div class="ttc" id="aclassERF_html_a9737ddb0de6b9e8a5b17c109d5ad3e08"><div class="ttname"><a href="classERF.html#a9737ddb0de6b9e8a5b17c109d5ad3e08">ERF::sampleptlog</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; std::fstream &gt; &gt; sampleptlog</div><div class="ttdef"><b>Definition:</b> ERF.H:1377</div></div>
@@ -1823,7 +1823,7 @@
 <div class="ttc" id="aclassERF_html_abe77a4434d27561109ffc666546511dc"><div class="ttname"><a href="classERF.html#abe77a4434d27561109ffc666546511dc">ERF::ax_src</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; ax_src</div><div class="ttdef"><b>Definition:</b> ERF.H:839</div></div>
 <div class="ttc" id="aclassERF_html_abfdc95a7c3cf7e413c1352bac38c93e8"><div class="ttname"><a href="classERF.html#abfdc95a7c3cf7e413c1352bac38c93e8">ERF::input_sponge</a></div><div class="ttdeci">void input_sponge(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_InitSponge.cpp:17</div></div>
 <div class="ttc" id="aclassERF_html_ac020980af9dbf46be43dd9f7127c06da"><div class="ttname"><a href="classERF.html#ac020980af9dbf46be43dd9f7127c06da">ERF::d_u_geos</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_u_geos</div><div class="ttdef"><b>Definition:</b> ERF.H:1123</div></div>
-<div class="ttc" id="aclassERF_html_ac0951404aa6802aad7a3be6b7375dfa2"><div class="ttname"><a href="classERF.html#ac0951404aa6802aad7a3be6b7375dfa2">ERF::Define_ERFFillPatchers</a></div><div class="ttdeci">void Define_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1902</div></div>
+<div class="ttc" id="aclassERF_html_ac0951404aa6802aad7a3be6b7375dfa2"><div class="ttname"><a href="classERF.html#ac0951404aa6802aad7a3be6b7375dfa2">ERF::Define_ERFFillPatchers</a></div><div class="ttdeci">void Define_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1919</div></div>
 <div class="ttc" id="aclassERF_html_ac1238c1616826c66df1dfd9076e6a3da"><div class="ttname"><a href="classERF.html#ac1238c1616826c66df1dfd9076e6a3da">ERF::NumDataLogs</a></div><div class="ttdeci">AMREX_FORCE_INLINE int NumDataLogs() noexcept</div><div class="ttdef"><b>Definition:</b> ERF.H:1245</div></div>
 <div class="ttc" id="aclassERF_html_ac1b9cce4a3c1736c4af78f6b0e2143ce"><div class="ttname"><a href="classERF.html#ac1b9cce4a3c1736c4af78f6b0e2143ce">ERF::turbPert</a></div><div class="ttdeci">TurbulentPerturbation turbPert</div><div class="ttdef"><b>Definition:</b> ERF.H:1010</div></div>
 <div class="ttc" id="aclassERF_html_ac1fa56ec90f44e3cdf487af46804163f"><div class="ttname"><a href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">ERF::rW_old</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; rW_old</div><div class="ttdef"><b>Definition:</b> ERF.H:761</div></div>
@@ -1831,7 +1831,7 @@
 <div class="ttc" id="aclassERF_html_ac4497025ab94461899960ee067c2c72a"><div class="ttname"><a href="classERF.html#ac4497025ab94461899960ee067c2c72a">ERF::FillCoarsePatch</a></div><div class="ttdeci">void FillCoarsePatch(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_FillCoarsePatch.cpp:21</div></div>
 <div class="ttc" id="aclassERF_html_ac44e400a7ce68e18fa44e9416cb1344e"><div class="ttname"><a href="classERF.html#ac44e400a7ce68e18fa44e9416cb1344e">ERF::ClearLevel</a></div><div class="ttdeci">void ClearLevel(int lev) override</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewLevel.cpp:484</div></div>
 <div class="ttc" id="aclassERF_html_ac81b3dfd7c6f21ba8479834e2ff1e652"><div class="ttname"><a href="classERF.html#ac81b3dfd7c6f21ba8479834e2ff1e652">ERF::ref_tags</a></div><div class="ttdeci">static amrex::Vector&lt; amrex::AMRErrorTag &gt; ref_tags</div><div class="ttdef"><b>Definition:</b> ERF.H:1171</div></div>
-<div class="ttc" id="aclassERF_html_ac81ec7f74a1be1c4a1e6e15e08385ed5"><div class="ttname"><a href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">ERF::make_physbcs</a></div><div class="ttdeci">void make_physbcs(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:612</div></div>
+<div class="ttc" id="aclassERF_html_ac81ec7f74a1be1c4a1e6e15e08385ed5"><div class="ttname"><a href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">ERF::make_physbcs</a></div><div class="ttdeci">void make_physbcs(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:610</div></div>
 <div class="ttc" id="aclassERF_html_ac94ddee2f501dbcea2a516284b7119b5"><div class="ttname"><a href="classERF.html#ac94ddee2f501dbcea2a516284b7119b5">ERF::d_w_subsid</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Gpu::DeviceVector&lt; amrex::Real &gt; &gt; d_w_subsid</div><div class="ttdef"><b>Definition:</b> ERF.H:1120</div></div>
 <div class="ttc" id="aclassERF_html_ac9a11403c2238d0d1e7b65b2d100dbaf"><div class="ttname"><a href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">ERF::FPr_w</a></div><div class="ttdeci">amrex::Vector&lt; ERFFillPatcher &gt; FPr_w</div><div class="ttdef"><b>Definition:</b> ERF.H:805</div></div>
 <div class="ttc" id="aclassERF_html_acab120bb9324e7298534d765c447d703"><div class="ttname"><a href="classERF.html#acab120bb9324e7298534d765c447d703">ERF::real_set_width</a></div><div class="ttdeci">int real_set_width</div><div class="ttdef"><b>Definition:</b> ERF.H:1071</div></div>
@@ -1856,7 +1856,7 @@
 <div class="ttc" id="aclassERF_html_ad64b5fe566102dc053b35ad337971a3e"><div class="ttname"><a href="classERF.html#ad64b5fe566102dc053b35ad337971a3e">ERF::advance_microphysics</a></div><div class="ttdeci">void advance_microphysics(int lev, amrex::MultiFab &amp;cons_in, const amrex::Real &amp;dt_advance, const int &amp;iteration, const amrex::Real &amp;time)</div><div class="ttdef"><b>Definition:</b> ERF_AdvanceMicrophysics.cpp:5</div></div>
 <div class="ttc" id="aclassERF_html_ad67b414a1a8b5bab6edeaf574f922825"><div class="ttname"><a href="classERF.html#ad67b414a1a8b5bab6edeaf574f922825">ERF::Lwave</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; Lwave</div><div class="ttdef"><b>Definition:</b> ERF.H:870</div></div>
 <div class="ttc" id="aclassERF_html_ad6c0181fed533a5b5a79864b44895506"><div class="ttname"><a href="classERF.html#ad6c0181fed533a5b5a79864b44895506">ERF::project_velocities</a></div><div class="ttdeci">void project_velocities(int lev, amrex::Real dt, amrex::Vector&lt; amrex::MultiFab &gt; &amp;vars, amrex::MultiFab &amp;p)</div><div class="ttdef"><b>Definition:</b> ERF_PoissonSolve.cpp:10</div></div>
-<div class="ttc" id="aclassERF_html_ad71a033b3fd107465a8621eaf7c77b28"><div class="ttname"><a href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ERF::ParameterSanityChecks</a></div><div class="ttdeci">void ParameterSanityChecks()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1658</div></div>
+<div class="ttc" id="aclassERF_html_ad71a033b3fd107465a8621eaf7c77b28"><div class="ttname"><a href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ERF::ParameterSanityChecks</a></div><div class="ttdeci">void ParameterSanityChecks()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1675</div></div>
 <div class="ttc" id="aclassERF_html_ad7886dcab90f37a8fcc91ede0c68b6cb"><div class="ttname"><a href="classERF.html#ad7886dcab90f37a8fcc91ede0c68b6cb">ERF::derive_stress_profiles</a></div><div class="ttdeci">void derive_stress_profiles(amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau11, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau12, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau13, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau22, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau23, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_tau33, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_hfx3, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_q1fx3, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_q2fx3, amrex::Gpu::HostVector&lt; amrex::Real &gt; &amp;h_avg_diss)</div><div class="ttdef"><b>Definition:</b> ERF_Write1DProfiles.cpp:482</div></div>
 <div class="ttc" id="aclassERF_html_ad8c2eca71737b102cc5cf75f97c6bd63"><div class="ttname"><a href="classERF.html#ad8c2eca71737b102cc5cf75f97c6bd63">ERF::Tau12_lev</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; Tau12_lev</div><div class="ttdef"><b>Definition:</b> ERF.H:809</div></div>
 <div class="ttc" id="aclassERF_html_ad9084179f7384e10a519989ffd51fd34"><div class="ttname"><a href="classERF.html#ad9084179f7384e10a519989ffd51fd34">ERF::cf_width</a></div><div class="ttdeci">int cf_width</div><div class="ttdef"><b>Definition:</b> ERF.H:800</div></div>
@@ -1864,7 +1864,7 @@
 <div class="ttc" id="aclassERF_html_ada098767690d194f89717b0deb3adeac"><div class="ttname"><a href="classERF.html#ada098767690d194f89717b0deb3adeac">ERF::zflux_imask</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::iMultiFab &gt; &gt; zflux_imask</div><div class="ttdef"><b>Definition:</b> ERF.H:899</div></div>
 <div class="ttc" id="aclassERF_html_adb272adf862040a2f1a6226c57c35627"><div class="ttname"><a href="classERF.html#adb272adf862040a2f1a6226c57c35627">ERF::m_expand_plotvars_to_unif_rr</a></div><div class="ttdeci">bool m_expand_plotvars_to_unif_rr</div><div class="ttdef"><b>Definition:</b> ERF.H:942</div></div>
 <div class="ttc" id="aclassERF_html_adc00038dfe4c332e5d15f621184c69e8"><div class="ttname"><a href="classERF.html#adc00038dfe4c332e5d15f621184c69e8">ERF::plot_file_on_restart</a></div><div class="ttdeci">int plot_file_on_restart</div><div class="ttdef"><b>Definition:</b> ERF.H:911</div></div>
-<div class="ttc" id="aclassERF_html_adc284f421c5fd9dd15c0e5cbe4ff5fc8"><div class="ttname"><a href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">ERF::Construct_ERFFillPatchers</a></div><div class="ttdeci">void Construct_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1876</div></div>
+<div class="ttc" id="aclassERF_html_adc284f421c5fd9dd15c0e5cbe4ff5fc8"><div class="ttname"><a href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">ERF::Construct_ERFFillPatchers</a></div><div class="ttdeci">void Construct_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1893</div></div>
 <div class="ttc" id="aclassERF_html_adca0cddd75f33ecb5fb8e0ef9601dae4"><div class="ttname"><a href="classERF.html#adca0cddd75f33ecb5fb8e0ef9601dae4">ERF::post_update</a></div><div class="ttdeci">void post_update(amrex::MultiFab &amp;state_mf, amrex::Real time, const amrex::Geometry &amp;geom)</div></div>
 <div class="ttc" id="aclassERF_html_adcd9f23975ffa605247b41d391c2a2f0"><div class="ttname"><a href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">ERF::num_boxes_at_level</a></div><div class="ttdeci">amrex::Vector&lt; int &gt; num_boxes_at_level</div><div class="ttdef"><b>Definition:</b> ERF.H:717</div></div>
 <div class="ttc" id="aclassERF_html_add33a9ec6db918b2ef03de4a92adc764"><div class="ttname"><a href="classERF.html#add33a9ec6db918b2ef03de4a92adc764">ERF::Factory</a></div><div class="ttdeci">amrex::FabFactory&lt; amrex::FArrayBox &gt; const  &amp; Factory(int lev) const noexcept</div><div class="ttdef"><b>Definition:</b> ERF.H:1398</div></div>
@@ -1907,7 +1907,7 @@
 <div class="ttc" id="aclassERF_html_af27fd93c086c23ab8c754e63e1a0c425"><div class="ttname"><a href="classERF.html#af27fd93c086c23ab8c754e63e1a0c425">ERF::metgrid_order</a></div><div class="ttdeci">int metgrid_order</div><div class="ttdef"><b>Definition:</b> ERF.H:1089</div></div>
 <div class="ttc" id="aclassERF_html_af282e3bdfdad38a0b898ed567ea446ee"><div class="ttname"><a href="classERF.html#af282e3bdfdad38a0b898ed567ea446ee">ERF::finished_wave</a></div><div class="ttdeci">bool finished_wave</div><div class="ttdef"><b>Definition:</b> ERF.H:873</div></div>
 <div class="ttc" id="aclassERF_html_af285247b24b173cd851fe49799d17f42"><div class="ttname"><a href="classERF.html#af285247b24b173cd851fe49799d17f42">ERF::ReadCheckpointFile</a></div><div class="ttdeci">void ReadCheckpointFile()</div><div class="ttdef"><b>Definition:</b> ERF_Checkpoint.cpp:273</div></div>
-<div class="ttc" id="aclassERF_html_af2e4de4eaa0f93149c1aefd58dc7068a"><div class="ttname"><a href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF::writeNow</a></div><div class="ttdeci">bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1953</div></div>
+<div class="ttc" id="aclassERF_html_af2e4de4eaa0f93149c1aefd58dc7068a"><div class="ttname"><a href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF::writeNow</a></div><div class="ttdeci">bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1970</div></div>
 <div class="ttc" id="aclassERF_html_af31e928baa970a1507dfb0233b352542"><div class="ttname"><a href="classERF.html#af31e928baa970a1507dfb0233b352542">ERF::vars_old</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::MultiFab &gt; &gt; vars_old</div><div class="ttdef"><b>Definition:</b> ERF.H:734</div></div>
 <div class="ttc" id="aclassERF_html_af46289079e053a6d74ddef0bf1a5d8a3"><div class="ttname"><a href="classERF.html#af46289079e053a6d74ddef0bf1a5d8a3">ERF::build_fine_mask</a></div><div class="ttdeci">amrex::MultiFab &amp; build_fine_mask(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_WriteScalarProfiles.cpp:429</div></div>
 <div class="ttc" id="aclassERF_html_af4e7dc93dae16aa2cc94bbb20b699a6f"><div class="ttname"><a href="classERF.html#af4e7dc93dae16aa2cc94bbb20b699a6f">ERF::physbcs_base</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; ERFPhysBCFunct_base &gt; &gt; physbcs_base</div><div class="ttdef"><b>Definition:</b> ERF.H:749</div></div>
@@ -1921,7 +1921,7 @@
 <div class="ttc" id="aclassERF_html_afb4294f848d86e4aefb74848bb71047e"><div class="ttname"><a href="classERF.html#afb4294f848d86e4aefb74848bb71047e">ERF::Tau22_lev</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; Tau22_lev</div><div class="ttdef"><b>Definition:</b> ERF.H:808</div></div>
 <div class="ttc" id="aclassERF_html_afb76c0633e2ba944c543e7a03a5e9424"><div class="ttname"><a href="classERF.html#afb76c0633e2ba944c543e7a03a5e9424">ERF::turbPert_amplitude</a></div><div class="ttdeci">void turbPert_amplitude(const int lev)</div><div class="ttdef"><b>Definition:</b> ERF_InitTurbPert.cpp:41</div></div>
 <div class="ttc" id="aclassERF_html_afb798c72ea4fde6f4da8d01a24c8c165"><div class="ttname"><a href="classERF.html#afb798c72ea4fde6f4da8d01a24c8c165">ERF::sample_lines</a></div><div class="ttdeci">void sample_lines(int lev, amrex::Real time, amrex::IntVect cell, amrex::MultiFab &amp;mf)</div><div class="ttdef"><b>Definition:</b> ERF_WriteScalarProfiles.cpp:287</div></div>
-<div class="ttc" id="aclassERF_html_afc2898daad269536c1a15443abf3fa75"><div class="ttname"><a href="classERF.html#afc2898daad269536c1a15443abf3fa75">ERF::initializeMicrophysics</a></div><div class="ttdeci">void initializeMicrophysics(const int &amp;)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1198</div></div>
+<div class="ttc" id="aclassERF_html_afc2898daad269536c1a15443abf3fa75"><div class="ttname"><a href="classERF.html#afc2898daad269536c1a15443abf3fa75">ERF::initializeMicrophysics</a></div><div class="ttdeci">void initializeMicrophysics(const int &amp;)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1215</div></div>
 <div class="ttc" id="aclassERF_html_afc653b103aa26c56acafed85cdd95f52"><div class="ttname"><a href="classERF.html#afc653b103aa26c56acafed85cdd95f52">ERF::plot_lsm</a></div><div class="ttdeci">bool plot_lsm</div><div class="ttdef"><b>Definition:</b> ERF.H:949</div></div>
 <div class="ttc" id="aclassERF_html_afd8cd5a477754776135befa668fdd0c9"><div class="ttname"><a href="classERF.html#afd8cd5a477754776135befa668fdd0c9">ERF::cons_names</a></div><div class="ttdeci">const amrex::Vector&lt; std::string &gt; cons_names</div><div class="ttdef"><b>Definition:</b> ERF.H:964</div></div>
 <div class="ttc" id="aclassERF_html_afded764725240c356faffa97dddbe03d"><div class="ttname"><a href="classERF.html#afded764725240c356faffa97dddbe03d">ERF::FillPatch</a></div><div class="ttdeci">void FillPatch(int lev, amrex::Real time, const amrex::Vector&lt; amrex::MultiFab * &gt; &amp;mfs_vel, bool cons_only=false)</div></div>
diff --git a/ERF__NCWpsFile_8H.html b/ERF__NCWpsFile_8H.html
index a845446c9..6e8ea8cea 100644
--- a/ERF__NCWpsFile_8H.html
+++ b/ERF__NCWpsFile_8H.html
@@ -295,55 +295,55 @@ <h2 class="memtitle"><span class="permalink"><a href="#abcadbd0591038f7d3c9bb13c
   </table>
   </dd>
 </dl>
-<div class="fragment"><div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;{</div>
-<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;    <span class="keywordtype">int</span> ioproc = amrex::ParallelDescriptor::IOProcessorNumber();  <span class="comment">// I/O rank</span></div>
-<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160; </div>
-<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;    amrex::Vector&lt;NDArray&lt;float&gt;&gt; nc_arrays(nc_var_names.size());</div>
-<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160; </div>
-<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;    <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor())</div>
-<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;    {</div>
-<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;        <a class="code" href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a>(fname, nc_var_names, nc_arrays);</div>
-<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    }</div>
-<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160; </div>
-<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> iv = 0; iv &lt; nc_var_names.size(); iv++)</div>
-<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;    {</div>
-<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;        FAB tmp;</div>
-<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;        <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor()) {</div>
-<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;            fill_fab_from_arrays&lt;FAB,DType&gt;(iv, nc_arrays, nc_var_names[iv], NC_dim_types[iv], tmp);</div>
-<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;        }</div>
-<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160; </div>
-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;        <span class="keywordtype">int</span> ncomp = tmp.nComp();</div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        amrex::Box box = tmp.box();</div>
-<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160; </div>
-<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;box,   1, ioproc);</div>
-<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;ncomp, 1, ioproc);</div>
-<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160; </div>
-<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;        <span class="keywordflow">if</span> (!amrex::ParallelDescriptor::IOProcessor()) {</div>
-<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;            tmp.resize(box,ncomp,amrex::The_Pinned_Arena());</div>
-<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;<span class="preprocessor">#else</span></div>
-<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;            tmp.resize(box,ncomp);</div>
-<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;        }</div>
+<div class="fragment"><div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;{</div>
+<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;    <span class="keywordtype">int</span> ioproc = amrex::ParallelDescriptor::IOProcessorNumber();  <span class="comment">// I/O rank</span></div>
+<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160; </div>
+<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;    amrex::Vector&lt;NDArray&lt;float&gt;&gt; nc_arrays(nc_var_names.size());</div>
+<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160; </div>
+<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;    <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor())</div>
+<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;    {</div>
+<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;        <a class="code" href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a>(fname, nc_var_names, nc_arrays);</div>
+<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;    }</div>
+<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160; </div>
+<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> iv = 0; iv &lt; nc_var_names.size(); iv++)</div>
+<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;    {</div>
+<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        FAB tmp;</div>
+<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor()) {</div>
+<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;            fill_fab_from_arrays&lt;FAB,DType&gt;(iv, nc_arrays, nc_var_names[iv], NC_dim_types[iv], tmp);</div>
+<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;        }</div>
+<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160; </div>
+<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;        <span class="keywordtype">int</span> ncomp = tmp.nComp();</div>
+<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;        amrex::Box box = tmp.box();</div>
+<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160; </div>
+<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;box,   1, ioproc);</div>
+<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;ncomp, 1, ioproc);</div>
 <div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160; </div>
-<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;        amrex::ParallelDescriptor::Bcast(tmp.dataPtr(), tmp.size(), ioproc);</div>
-<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160; </div>
-<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;        <span class="comment">// Shift box by the domain lower corner</span></div>
-<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;        amrex::Box  fab_bx = tmp.box();</div>
-<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;        amrex::Dim3 dom_lb = lbound(domain);</div>
-<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;        fab_bx += amrex::IntVect(dom_lb.x,dom_lb.y,dom_lb.z);</div>
-<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        <span class="comment">// fab_vars points to data on device</span></div>
-<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;        fab_vars[iv]-&gt;resize(fab_bx,1);</div>
-<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        amrex::Gpu::copy(amrex::Gpu::hostToDevice,</div>
-<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;                         tmp.dataPtr(), tmp.dataPtr() + tmp.size(),</div>
-<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;                         fab_vars[iv]-&gt;dataPtr());</div>
-<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;<span class="preprocessor">#else</span></div>
-<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;        <span class="comment">// Provided by BaseFab inheritance through FArrayBox</span></div>
-<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;        fab_vars[iv]-&gt;copy(tmp,tmp.box(),0,fab_bx,0,1);</div>
-<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;    }</div>
-<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;}</div>
+<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;        <span class="keywordflow">if</span> (!amrex::ParallelDescriptor::IOProcessor()) {</div>
+<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;            tmp.resize(box,ncomp,amrex::The_Pinned_Arena());</div>
+<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;<span class="preprocessor">#else</span></div>
+<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;            tmp.resize(box,ncomp);</div>
+<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        }</div>
+<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160; </div>
+<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;        amrex::ParallelDescriptor::Bcast(tmp.dataPtr(), tmp.size(), ioproc);</div>
+<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160; </div>
+<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;        <span class="comment">// Shift box by the domain lower corner</span></div>
+<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;        amrex::Box  fab_bx = tmp.box();</div>
+<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;        amrex::Dim3 dom_lb = lbound(domain);</div>
+<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;        fab_bx += amrex::IntVect(dom_lb.x,dom_lb.y,dom_lb.z);</div>
+<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;        <span class="comment">// fab_vars points to data on device</span></div>
+<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;        fab_vars[iv]-&gt;resize(fab_bx,1);</div>
+<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;        amrex::Gpu::copy(amrex::Gpu::hostToDevice,</div>
+<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;                         tmp.dataPtr(), tmp.dataPtr() + tmp.size(),</div>
+<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;                         fab_vars[iv]-&gt;dataPtr());</div>
+<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;<span class="preprocessor">#else</span></div>
+<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;        <span class="comment">// Provided by BaseFab inheritance through FArrayBox</span></div>
+<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;        fab_vars[iv]-&gt;copy(tmp,tmp.box(),0,fab_bx,0,1);</div>
+<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;    }</div>
+<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;}</div>
 <div class="ttc" id="aERF__NCWpsFile_8H_html_aa682cd5b28ee9ffaf36c6944bd124af0"><div class="ttname"><a href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a></div><div class="ttdeci">void ReadNetCDFFile(const std::string &amp;fname, amrex::Vector&lt; std::string &gt; names, amrex::Vector&lt; NDArray&lt; DType &gt; &gt; &amp;arrays)</div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:157</div></div>
 </div><!-- fragment --><div class="dynheader">
 Here is the call graph for this function:</div>
@@ -486,32 +486,40 @@ <h2 class="memtitle"><span class="permalink"><a href="#a5fbca9044ab6c565786cf158
 <div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;    <span class="comment">// TODO:  The box will only start at (0,0,0) at level 0 -- we need to generalize this</span></div>
 <div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;    amrex::Box my_box(amrex::IntVect(0,0,0), amrex::IntVect(ns3-1,ns2-1,ns1-1));</div>
 <div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160; </div>
-<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;U&quot;</span> || var_name == <span class="stringliteral">&quot;UU&quot;</span> ||</div>
-<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_U&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_UY&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(1,0,0)));</div>
-<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;V&quot;</span> || var_name == <span class="stringliteral">&quot;VV&quot;</span> ||</div>
-<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_V&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_VY&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(0,1,0)));</div>
-<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;W&quot;</span> || var_name == <span class="stringliteral">&quot;WW&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
-<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160; </div>
-<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    amrex::Arena* Arena_Used = amrex::The_Arena();</div>
-<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    <span class="comment">// Make sure temp lives on CPU since nc_arrays lives on CPU only</span></div>
-<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;    Arena_Used = amrex::The_Pinned_Arena();</div>
-<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;    temp.resize(my_box,1, Arena_Used);</div>
-<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;    amrex::Array4&lt;DType&gt; fab_arr = temp.array();</div>
+<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;PH&quot;</span> || var_name == <span class="stringliteral">&quot;PHB&quot;</span>) {</div>
+<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
+<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;U&quot;</span> || var_name == <span class="stringliteral">&quot;UU&quot;</span> ||</div>
+<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_U&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_UY&quot;</span>)</div>
+<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    {</div>
+<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(1,0,0)));</div>
+<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;V&quot;</span> || var_name == <span class="stringliteral">&quot;VV&quot;</span> ||</div>
+<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_V&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_VY&quot;</span>)</div>
+<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    {</div>
+<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,1,0)));</div>
+<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;W&quot;</span> || var_name == <span class="stringliteral">&quot;WW&quot;</span>) {</div>
+<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
+<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;    }</div>
 <div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160; </div>
-<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    <span class="keywordtype">int</span> ioff = temp.box().smallEnd()[0];</div>
-<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;    <span class="keywordtype">int</span> joff = temp.box().smallEnd()[1];</div>
-<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160; </div>
-<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;    <span class="keyword">auto</span> num_pts = my_box.numPts();</div>
-<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160; </div>
-<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n(0); n &lt; num_pts; ++n) {</div>
-<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;        <span class="keywordtype">int</span> k  = n / (ns2*ns3);</div>
-<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;        <span class="keywordtype">int</span> j  = (n - k*(ns2*ns3)) / ns3 + joff;</div>
-<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;        <span class="keywordtype">int</span> i  = n - k*(ns2*ns3) - (j-joff) * ns3 + ioff;</div>
-<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;        fab_arr(i,j,k,0) = <span class="keyword">static_cast&lt;</span>DType<span class="keyword">&gt;</span>(*(nc_arrays[iv].get_data()+n));</div>
-<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;    }</div>
-<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;}</div>
+<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    amrex::Arena* Arena_Used = amrex::The_Arena();</div>
+<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;    <span class="comment">// Make sure temp lives on CPU since nc_arrays lives on CPU only</span></div>
+<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;    Arena_Used = amrex::The_Pinned_Arena();</div>
+<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;    temp.resize(my_box,1, Arena_Used);</div>
+<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;    amrex::Array4&lt;DType&gt; fab_arr = temp.array();</div>
+<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160; </div>
+<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;    <span class="keywordtype">int</span> ioff = temp.box().smallEnd()[0];</div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;    <span class="keywordtype">int</span> joff = temp.box().smallEnd()[1];</div>
+<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160; </div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;    <span class="keyword">auto</span> num_pts = my_box.numPts();</div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160; </div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n(0); n &lt; num_pts; ++n) {</div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        <span class="keywordtype">int</span> k  = n / (ns2*ns3);</div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        <span class="keywordtype">int</span> j  = (n - k*(ns2*ns3)) / ns3 + joff;</div>
+<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;        <span class="keywordtype">int</span> i  = n - k*(ns2*ns3) - (j-joff) * ns3 + ioff;</div>
+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;        fab_arr(i,j,k,0) = <span class="keyword">static_cast&lt;</span>DType<span class="keyword">&gt;</span>(*(nc_arrays[iv].get_data()+n));</div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;    }</div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;}</div>
 </div><!-- fragment -->
 </div>
 </div>
diff --git a/ERF__NCWpsFile_8H_source.html b/ERF__NCWpsFile_8H_source.html
index 6e1b5f520..65f8dbb6c 100644
--- a/ERF__NCWpsFile_8H_source.html
+++ b/ERF__NCWpsFile_8H_source.html
@@ -339,99 +339,107 @@
 <div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;    <span class="comment">// TODO:  The box will only start at (0,0,0) at level 0 -- we need to generalize this</span></div>
 <div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;    amrex::Box my_box(amrex::IntVect(0,0,0), amrex::IntVect(ns3-1,ns2-1,ns1-1));</div>
 <div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160; </div>
-<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;U&quot;</span> || var_name == <span class="stringliteral">&quot;UU&quot;</span> ||</div>
-<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_U&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_UY&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(1,0,0)));</div>
-<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;V&quot;</span> || var_name == <span class="stringliteral">&quot;VV&quot;</span> ||</div>
-<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_V&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_VY&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(0,1,0)));</div>
-<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;W&quot;</span> || var_name == <span class="stringliteral">&quot;WW&quot;</span>) my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
-<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160; </div>
-<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    amrex::Arena* Arena_Used = amrex::The_Arena();</div>
-<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    <span class="comment">// Make sure temp lives on CPU since nc_arrays lives on CPU only</span></div>
-<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;    Arena_Used = amrex::The_Pinned_Arena();</div>
-<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;    temp.resize(my_box,1, Arena_Used);</div>
-<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;    amrex::Array4&lt;DType&gt; fab_arr = temp.array();</div>
+<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;PH&quot;</span> || var_name == <span class="stringliteral">&quot;PHB&quot;</span>) {</div>
+<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
+<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;U&quot;</span> || var_name == <span class="stringliteral">&quot;UU&quot;</span> ||</div>
+<div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_U&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_UY&quot;</span>)</div>
+<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    {</div>
+<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(1,0,0)));</div>
+<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;V&quot;</span> || var_name == <span class="stringliteral">&quot;VV&quot;</span> ||</div>
+<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        var_name == <span class="stringliteral">&quot;MAPFAC_V&quot;</span> || var_name == <span class="stringliteral">&quot;MAPFAC_VY&quot;</span>)</div>
+<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    {</div>
+<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,1,0)));</div>
+<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (var_name == <span class="stringliteral">&quot;W&quot;</span> || var_name == <span class="stringliteral">&quot;WW&quot;</span>) {</div>
+<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;        my_box.setType(amrex::IndexType(amrex::IntVect(0,0,1)));</div>
+<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;    }</div>
 <div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160; </div>
-<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    <span class="keywordtype">int</span> ioff = temp.box().smallEnd()[0];</div>
-<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;    <span class="keywordtype">int</span> joff = temp.box().smallEnd()[1];</div>
-<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160; </div>
-<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;    <span class="keyword">auto</span> num_pts = my_box.numPts();</div>
-<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160; </div>
-<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n(0); n &lt; num_pts; ++n) {</div>
-<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;        <span class="keywordtype">int</span> k  = n / (ns2*ns3);</div>
-<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;        <span class="keywordtype">int</span> j  = (n - k*(ns2*ns3)) / ns3 + joff;</div>
-<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;        <span class="keywordtype">int</span> i  = n - k*(ns2*ns3) - (j-joff) * ns3 + ioff;</div>
-<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;        fab_arr(i,j,k,0) = <span class="keyword">static_cast&lt;</span>DType<span class="keyword">&gt;</span>(*(nc_arrays[iv].get_data()+n));</div>
-<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;    }</div>
-<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;}</div>
-<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;<span class="comment"></span> </div>
-<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;<span class="comment">/**</span></div>
-<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;<span class="comment"> * Function to read NetCDF variables and fill the corresponding Array4&#39;s</span></div>
-<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;<span class="comment"> *</span></div>
-<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;<span class="comment"> * @param fname Name of the NetCDF file to be read</span></div>
-<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;<span class="comment"> * @param nc_var_names Variable names in the NetCDF file</span></div>
-<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;<span class="comment"> * @param NC_dim_types NetCDF data dimension types</span></div>
-<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;<span class="comment"> * @param fab_vars Fab data we are to fill</span></div>
-<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;<span class="comment"> */</span></div>
-<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;<span class="keyword">template</span>&lt;<span class="keyword">class</span> FAB,<span class="keyword">typename</span> DType&gt;</div>
-<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;<span class="keywordtype">void</span></div>
-<div class="line"><a name="l00291"></a><span class="lineno"><a class="line" href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">  291</a></span>&#160;<a class="code" href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">BuildFABsFromNetCDFFile</a> (<span class="keyword">const</span> amrex::Box&amp; domain,</div>
-<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;                         <span class="keyword">const</span> std::string &amp;fname,</div>
-<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;                         amrex::Vector&lt;std::string&gt; nc_var_names,</div>
-<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;                         amrex::Vector&lt;enum NC_Data_Dims_Type&gt; NC_dim_types,</div>
-<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;                         amrex::Vector&lt;FAB*&gt; fab_vars)</div>
-<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;{</div>
-<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;    <span class="keywordtype">int</span> ioproc = amrex::ParallelDescriptor::IOProcessorNumber();  <span class="comment">// I/O rank</span></div>
-<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160; </div>
-<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;    amrex::Vector&lt;NDArray&lt;float&gt;&gt; nc_arrays(nc_var_names.size());</div>
-<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160; </div>
-<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;    <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor())</div>
-<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;    {</div>
-<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;        <a class="code" href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a>(fname, nc_var_names, nc_arrays);</div>
-<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    }</div>
-<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160; </div>
-<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> iv = 0; iv &lt; nc_var_names.size(); iv++)</div>
-<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;    {</div>
-<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;        FAB tmp;</div>
-<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;        <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor()) {</div>
-<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;            fill_fab_from_arrays&lt;FAB,DType&gt;(iv, nc_arrays, nc_var_names[iv], NC_dim_types[iv], tmp);</div>
-<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;        }</div>
-<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160; </div>
-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;        <span class="keywordtype">int</span> ncomp = tmp.nComp();</div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;        amrex::Box box = tmp.box();</div>
-<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160; </div>
-<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;box,   1, ioproc);</div>
-<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;ncomp, 1, ioproc);</div>
-<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160; </div>
-<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;        <span class="keywordflow">if</span> (!amrex::ParallelDescriptor::IOProcessor()) {</div>
-<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;            tmp.resize(box,ncomp,amrex::The_Pinned_Arena());</div>
-<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;<span class="preprocessor">#else</span></div>
-<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;            tmp.resize(box,ncomp);</div>
-<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;        }</div>
+<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    amrex::Arena* Arena_Used = amrex::The_Arena();</div>
+<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;    <span class="comment">// Make sure temp lives on CPU since nc_arrays lives on CPU only</span></div>
+<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;    Arena_Used = amrex::The_Pinned_Arena();</div>
+<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;    temp.resize(my_box,1, Arena_Used);</div>
+<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;    amrex::Array4&lt;DType&gt; fab_arr = temp.array();</div>
+<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160; </div>
+<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;    <span class="keywordtype">int</span> ioff = temp.box().smallEnd()[0];</div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;    <span class="keywordtype">int</span> joff = temp.box().smallEnd()[1];</div>
+<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160; </div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;    <span class="keyword">auto</span> num_pts = my_box.numPts();</div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160; </div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> n(0); n &lt; num_pts; ++n) {</div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;        <span class="keywordtype">int</span> k  = n / (ns2*ns3);</div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        <span class="keywordtype">int</span> j  = (n - k*(ns2*ns3)) / ns3 + joff;</div>
+<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;        <span class="keywordtype">int</span> i  = n - k*(ns2*ns3) - (j-joff) * ns3 + ioff;</div>
+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;        fab_arr(i,j,k,0) = <span class="keyword">static_cast&lt;</span>DType<span class="keyword">&gt;</span>(*(nc_arrays[iv].get_data()+n));</div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;    }</div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;}</div>
+<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;<span class="comment"></span> </div>
+<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;<span class="comment">/**</span></div>
+<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;<span class="comment"> * Function to read NetCDF variables and fill the corresponding Array4&#39;s</span></div>
+<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;<span class="comment"> *</span></div>
+<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;<span class="comment"> * @param fname Name of the NetCDF file to be read</span></div>
+<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;<span class="comment"> * @param nc_var_names Variable names in the NetCDF file</span></div>
+<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;<span class="comment"> * @param NC_dim_types NetCDF data dimension types</span></div>
+<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;<span class="comment"> * @param fab_vars Fab data we are to fill</span></div>
+<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;<span class="comment"> */</span></div>
+<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;<span class="keyword">template</span>&lt;<span class="keyword">class</span> FAB,<span class="keyword">typename</span> DType&gt;</div>
+<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160;<span class="keywordtype">void</span></div>
+<div class="line"><a name="l00299"></a><span class="lineno"><a class="line" href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">  299</a></span>&#160;<a class="code" href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">BuildFABsFromNetCDFFile</a> (<span class="keyword">const</span> amrex::Box&amp; domain,</div>
+<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;                         <span class="keyword">const</span> std::string &amp;fname,</div>
+<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;                         amrex::Vector&lt;std::string&gt; nc_var_names,</div>
+<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;                         amrex::Vector&lt;enum NC_Data_Dims_Type&gt; NC_dim_types,</div>
+<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;                         amrex::Vector&lt;FAB*&gt; fab_vars)</div>
+<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;{</div>
+<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;    <span class="keywordtype">int</span> ioproc = amrex::ParallelDescriptor::IOProcessorNumber();  <span class="comment">// I/O rank</span></div>
+<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160; </div>
+<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160;    amrex::Vector&lt;NDArray&lt;float&gt;&gt; nc_arrays(nc_var_names.size());</div>
+<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160; </div>
+<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;    <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor())</div>
+<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;    {</div>
+<div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;        <a class="code" href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a>(fname, nc_var_names, nc_arrays);</div>
+<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;    }</div>
+<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160; </div>
+<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> iv = 0; iv &lt; nc_var_names.size(); iv++)</div>
+<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;    {</div>
+<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;        FAB tmp;</div>
+<div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;        <span class="keywordflow">if</span> (amrex::ParallelDescriptor::IOProcessor()) {</div>
+<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;            fill_fab_from_arrays&lt;FAB,DType&gt;(iv, nc_arrays, nc_var_names[iv], NC_dim_types[iv], tmp);</div>
+<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;        }</div>
+<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160; </div>
+<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;        <span class="keywordtype">int</span> ncomp = tmp.nComp();</div>
+<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;        amrex::Box box = tmp.box();</div>
+<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160; </div>
+<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;box,   1, ioproc);</div>
+<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;        amrex::ParallelDescriptor::Bcast(&amp;ncomp, 1, ioproc);</div>
 <div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160; </div>
-<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;        amrex::ParallelDescriptor::Bcast(tmp.dataPtr(), tmp.size(), ioproc);</div>
-<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160; </div>
-<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;        <span class="comment">// Shift box by the domain lower corner</span></div>
-<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;        amrex::Box  fab_bx = tmp.box();</div>
-<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;        amrex::Dim3 dom_lb = lbound(domain);</div>
-<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;        fab_bx += amrex::IntVect(dom_lb.x,dom_lb.y,dom_lb.z);</div>
-<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        <span class="comment">// fab_vars points to data on device</span></div>
-<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;        fab_vars[iv]-&gt;resize(fab_bx,1);</div>
-<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
-<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        amrex::Gpu::copy(amrex::Gpu::hostToDevice,</div>
-<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;                         tmp.dataPtr(), tmp.dataPtr() + tmp.size(),</div>
-<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;                         fab_vars[iv]-&gt;dataPtr());</div>
-<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;<span class="preprocessor">#else</span></div>
-<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;        <span class="comment">// Provided by BaseFab inheritance through FArrayBox</span></div>
-<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;        fab_vars[iv]-&gt;copy(tmp,tmp.box(),0,fab_bx,0,1);</div>
-<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;    }</div>
-<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;}</div>
-<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160; </div>
-<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;        <span class="keywordflow">if</span> (!amrex::ParallelDescriptor::IOProcessor()) {</div>
+<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;            tmp.resize(box,ncomp,amrex::The_Pinned_Arena());</div>
+<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;<span class="preprocessor">#else</span></div>
+<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;            tmp.resize(box,ncomp);</div>
+<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        }</div>
+<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160; </div>
+<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;        amrex::ParallelDescriptor::Bcast(tmp.dataPtr(), tmp.size(), ioproc);</div>
+<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160; </div>
+<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;        <span class="comment">// Shift box by the domain lower corner</span></div>
+<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;        amrex::Box  fab_bx = tmp.box();</div>
+<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;        amrex::Dim3 dom_lb = lbound(domain);</div>
+<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;        fab_bx += amrex::IntVect(dom_lb.x,dom_lb.y,dom_lb.z);</div>
+<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;        <span class="comment">// fab_vars points to data on device</span></div>
+<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;        fab_vars[iv]-&gt;resize(fab_bx,1);</div>
+<div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;<span class="preprocessor">#ifdef AMREX_USE_GPU</span></div>
+<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;        amrex::Gpu::copy(amrex::Gpu::hostToDevice,</div>
+<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;                         tmp.dataPtr(), tmp.dataPtr() + tmp.size(),</div>
+<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;                         fab_vars[iv]-&gt;dataPtr());</div>
+<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;<span class="preprocessor">#else</span></div>
+<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;        <span class="comment">// Provided by BaseFab inheritance through FArrayBox</span></div>
+<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;        fab_vars[iv]-&gt;copy(tmp,tmp.box(),0,fab_bx,0,1);</div>
+<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;    }</div>
+<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;}</div>
+<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160; </div>
+<div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;<span class="preprocessor">#endif</span></div>
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@@ -447,7 +455,7 @@
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 <div class="ttc" id="aERF__NCWpsFile_8H_html_aa682cd5b28ee9ffaf36c6944bd124af0"><div class="ttname"><a href="ERF__NCWpsFile_8H.html#aa682cd5b28ee9ffaf36c6944bd124af0">ReadNetCDFFile</a></div><div class="ttdeci">void ReadNetCDFFile(const std::string &amp;fname, amrex::Vector&lt; std::string &gt; names, amrex::Vector&lt; NDArray&lt; DType &gt; &gt; &amp;arrays)</div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:157</div></div>
 <div class="ttc" id="aERF__NCWpsFile_8H_html_aae7cfa7d43851de007130e9a44b7f1c0"><div class="ttname"><a href="ERF__NCWpsFile_8H.html#aae7cfa7d43851de007130e9a44b7f1c0">BuildFABsFromWRFBdyFile</a></div><div class="ttdeci">int BuildFABsFromWRFBdyFile(const std::string &amp;fname, amrex::Vector&lt; amrex::Vector&lt; amrex::FArrayBox &gt;&gt; &amp;bdy_data_xlo, amrex::Vector&lt; amrex::Vector&lt; amrex::FArrayBox &gt;&gt; &amp;bdy_data_xhi, amrex::Vector&lt; amrex::Vector&lt; amrex::FArrayBox &gt;&gt; &amp;bdy_data_ylo, amrex::Vector&lt; amrex::Vector&lt; amrex::FArrayBox &gt;&gt; &amp;bdy_data_yhi)</div></div>
-<div class="ttc" id="aERF__NCWpsFile_8H_html_abcadbd0591038f7d3c9bb13c37df21f9"><div class="ttname"><a href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">BuildFABsFromNetCDFFile</a></div><div class="ttdeci">void BuildFABsFromNetCDFFile(const amrex::Box &amp;domain, const std::string &amp;fname, amrex::Vector&lt; std::string &gt; nc_var_names, amrex::Vector&lt; enum NC_Data_Dims_Type &gt; NC_dim_types, amrex::Vector&lt; FAB * &gt; fab_vars)</div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:291</div></div>
+<div class="ttc" id="aERF__NCWpsFile_8H_html_abcadbd0591038f7d3c9bb13c37df21f9"><div class="ttname"><a href="ERF__NCWpsFile_8H.html#abcadbd0591038f7d3c9bb13c37df21f9">BuildFABsFromNetCDFFile</a></div><div class="ttdeci">void BuildFABsFromNetCDFFile(const amrex::Box &amp;domain, const std::string &amp;fname, amrex::Vector&lt; std::string &gt; nc_var_names, amrex::Vector&lt; enum NC_Data_Dims_Type &gt; NC_dim_types, amrex::Vector&lt; FAB * &gt; fab_vars)</div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:299</div></div>
 <div class="ttc" id="aclassncutils_1_1NCFile_html_a2881b70e450e11f01b474c538b8d6885"><div class="ttname"><a href="classncutils_1_1NCFile.html#a2881b70e450e11f01b474c538b8d6885">ncutils::NCFile::open</a></div><div class="ttdeci">static NCFile open(const std::string &amp;name, const int cmode=NC_NOWRITE)</div><div class="ttdef"><b>Definition:</b> ERF_NCInterface.cpp:674</div></div>
 <div class="ttc" id="astructNDArray_html"><div class="ttname"><a href="structNDArray.html">NDArray</a></div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:51</div></div>
 <div class="ttc" id="astructNDArray_html_a0a1c90304eddb4d078132a1c1f45bef9"><div class="ttname"><a href="structNDArray.html#a0a1c90304eddb4d078132a1c1f45bef9">NDArray::owned</a></div><div class="ttdeci">bool owned</div><div class="ttdef"><b>Definition:</b> ERF_NCWpsFile.H:121</div></div>
diff --git a/classERF.html b/classERF.html
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-<div class="line"><a name="l01878"></a><span class="lineno"> 1878</span>&#160;    <span class="keyword">auto</span>&amp; fine_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
-<div class="line"><a name="l01879"></a><span class="lineno"> 1879</span>&#160;    <span class="keyword">auto</span>&amp; crse_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev-1];</div>
-<div class="line"><a name="l01880"></a><span class="lineno"> 1880</span>&#160;    <span class="keyword">auto</span>&amp; ba_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
-<div class="line"><a name="l01881"></a><span class="lineno"> 1881</span>&#160;    <span class="keyword">auto</span>&amp; ba_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
-<div class="line"><a name="l01882"></a><span class="lineno"> 1882</span>&#160;    <span class="keyword">auto</span>&amp; dm_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
-<div class="line"><a name="l01883"></a><span class="lineno"> 1883</span>&#160;    <span class="keyword">auto</span>&amp; dm_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
-<div class="line"><a name="l01884"></a><span class="lineno"> 1884</span>&#160; </div>
-<div class="line"><a name="l01885"></a><span class="lineno"> 1885</span>&#160;    <span class="keywordtype">int</span> ncomp = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
-<div class="line"><a name="l01886"></a><span class="lineno"> 1886</span>&#160; </div>
-<div class="line"><a name="l01887"></a><span class="lineno"> 1887</span>&#160;    <a class="code" href="classERF.html#a34160ca20fb400ee285664117cb80512">FPr_c</a>.emplace_back(ba_fine, dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01888"></a><span class="lineno"> 1888</span>&#160;                       ba_crse, dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01889"></a><span class="lineno"> 1889</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, ncomp, &amp;cell_cons_interp);</div>
-<div class="line"><a name="l01890"></a><span class="lineno"> 1890</span>&#160;    <a class="code" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4">FPr_u</a>.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01891"></a><span class="lineno"> 1891</span>&#160;                       convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01892"></a><span class="lineno"> 1892</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01893"></a><span class="lineno"> 1893</span>&#160;    <a class="code" href="classERF.html#a1dc7086aec533a042e6033706845b0c3">FPr_v</a>.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01894"></a><span class="lineno"> 1894</span>&#160;                       convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01895"></a><span class="lineno"> 1895</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01896"></a><span class="lineno"> 1896</span>&#160;    <a class="code" href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">FPr_w</a>.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01897"></a><span class="lineno"> 1897</span>&#160;                       convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01898"></a><span class="lineno"> 1898</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01899"></a><span class="lineno"> 1899</span>&#160;}</div>
+<div class="fragment"><div class="line"><a name="l01894"></a><span class="lineno"> 1894</span>&#160;{</div>
+<div class="line"><a name="l01895"></a><span class="lineno"> 1895</span>&#160;    <span class="keyword">auto</span>&amp; fine_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
+<div class="line"><a name="l01896"></a><span class="lineno"> 1896</span>&#160;    <span class="keyword">auto</span>&amp; crse_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev-1];</div>
+<div class="line"><a name="l01897"></a><span class="lineno"> 1897</span>&#160;    <span class="keyword">auto</span>&amp; ba_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
+<div class="line"><a name="l01898"></a><span class="lineno"> 1898</span>&#160;    <span class="keyword">auto</span>&amp; ba_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
+<div class="line"><a name="l01899"></a><span class="lineno"> 1899</span>&#160;    <span class="keyword">auto</span>&amp; dm_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
+<div class="line"><a name="l01900"></a><span class="lineno"> 1900</span>&#160;    <span class="keyword">auto</span>&amp; dm_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
+<div class="line"><a name="l01901"></a><span class="lineno"> 1901</span>&#160; </div>
+<div class="line"><a name="l01902"></a><span class="lineno"> 1902</span>&#160;    <span class="keywordtype">int</span> ncomp = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
+<div class="line"><a name="l01903"></a><span class="lineno"> 1903</span>&#160; </div>
+<div class="line"><a name="l01904"></a><span class="lineno"> 1904</span>&#160;    <a class="code" href="classERF.html#a34160ca20fb400ee285664117cb80512">FPr_c</a>.emplace_back(ba_fine, dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01905"></a><span class="lineno"> 1905</span>&#160;                       ba_crse, dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01906"></a><span class="lineno"> 1906</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, ncomp, &amp;cell_cons_interp);</div>
+<div class="line"><a name="l01907"></a><span class="lineno"> 1907</span>&#160;    <a class="code" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4">FPr_u</a>.emplace_back(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01908"></a><span class="lineno"> 1908</span>&#160;                       convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01909"></a><span class="lineno"> 1909</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
+<div class="line"><a name="l01910"></a><span class="lineno"> 1910</span>&#160;    <a class="code" href="classERF.html#a1dc7086aec533a042e6033706845b0c3">FPr_v</a>.emplace_back(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01911"></a><span class="lineno"> 1911</span>&#160;                       convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01912"></a><span class="lineno"> 1912</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
+<div class="line"><a name="l01913"></a><span class="lineno"> 1913</span>&#160;    <a class="code" href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">FPr_w</a>.emplace_back(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01914"></a><span class="lineno"> 1914</span>&#160;                       convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01915"></a><span class="lineno"> 1915</span>&#160;                       -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
+<div class="line"><a name="l01916"></a><span class="lineno"> 1916</span>&#160;}</div>
 <div class="ttc" id="aclassERF_html_a1e3e2855b6e811596226c167573ad62d"><div class="ttname"><a href="classERF.html#a1e3e2855b6e811596226c167573ad62d">ERF::cf_set_width</a></div><div class="ttdeci">int cf_set_width</div><div class="ttdef"><b>Definition:</b> ERF.H:801</div></div>
 </div><!-- fragment -->
 </div>
@@ -3029,29 +3029,29 @@ <h2 class="memtitle"><span class="permalink"><a href="#ac0951404aa6802aad7a3be6b
   </tr>
 </table>
 </div><div class="memdoc">
-<div class="fragment"><div class="line"><a name="l01903"></a><span class="lineno"> 1903</span>&#160;{</div>
-<div class="line"><a name="l01904"></a><span class="lineno"> 1904</span>&#160;    <span class="keyword">auto</span>&amp; fine_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
-<div class="line"><a name="l01905"></a><span class="lineno"> 1905</span>&#160;    <span class="keyword">auto</span>&amp; crse_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev-1];</div>
-<div class="line"><a name="l01906"></a><span class="lineno"> 1906</span>&#160;    <span class="keyword">auto</span>&amp; ba_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
-<div class="line"><a name="l01907"></a><span class="lineno"> 1907</span>&#160;    <span class="keyword">auto</span>&amp; ba_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
-<div class="line"><a name="l01908"></a><span class="lineno"> 1908</span>&#160;    <span class="keyword">auto</span>&amp; dm_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
-<div class="line"><a name="l01909"></a><span class="lineno"> 1909</span>&#160;    <span class="keyword">auto</span>&amp; dm_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
-<div class="line"><a name="l01910"></a><span class="lineno"> 1910</span>&#160; </div>
-<div class="line"><a name="l01911"></a><span class="lineno"> 1911</span>&#160;    <span class="keywordtype">int</span> ncomp = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
-<div class="line"><a name="l01912"></a><span class="lineno"> 1912</span>&#160; </div>
-<div class="line"><a name="l01913"></a><span class="lineno"> 1913</span>&#160;    <a class="code" href="classERF.html#a34160ca20fb400ee285664117cb80512">FPr_c</a>[lev-1].Define(ba_fine, dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01914"></a><span class="lineno"> 1914</span>&#160;                        ba_crse, dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01915"></a><span class="lineno"> 1915</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, ncomp, &amp;cell_cons_interp);</div>
-<div class="line"><a name="l01916"></a><span class="lineno"> 1916</span>&#160;    <a class="code" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4">FPr_u</a>[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01917"></a><span class="lineno"> 1917</span>&#160;                        convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01918"></a><span class="lineno"> 1918</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01919"></a><span class="lineno"> 1919</span>&#160;    <a class="code" href="classERF.html#a1dc7086aec533a042e6033706845b0c3">FPr_v</a>[lev-1].Define(convert(ba_fine, IntVect(0,1,0)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01920"></a><span class="lineno"> 1920</span>&#160;                        convert(ba_crse, IntVect(0,1,0)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01921"></a><span class="lineno"> 1921</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01922"></a><span class="lineno"> 1922</span>&#160;    <a class="code" href="classERF.html#ac9a11403c2238d0d1e7b65b2d100dbaf">FPr_w</a>[lev-1].Define(convert(ba_fine, IntVect(0,0,1)), dm_fine, geom[lev]  ,</div>
-<div class="line"><a name="l01923"></a><span class="lineno"> 1923</span>&#160;                        convert(ba_crse, IntVect(0,0,1)), dm_crse, geom[lev-1],</div>
-<div class="line"><a name="l01924"></a><span class="lineno"> 1924</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
-<div class="line"><a name="l01925"></a><span class="lineno"> 1925</span>&#160;}</div>
+<div class="fragment"><div class="line"><a name="l01920"></a><span class="lineno"> 1920</span>&#160;{</div>
+<div class="line"><a name="l01921"></a><span class="lineno"> 1921</span>&#160;    <span class="keyword">auto</span>&amp; fine_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
+<div class="line"><a name="l01922"></a><span class="lineno"> 1922</span>&#160;    <span class="keyword">auto</span>&amp; crse_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev-1];</div>
+<div class="line"><a name="l01923"></a><span class="lineno"> 1923</span>&#160;    <span class="keyword">auto</span>&amp; ba_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
+<div class="line"><a name="l01924"></a><span class="lineno"> 1924</span>&#160;    <span class="keyword">auto</span>&amp; ba_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].boxArray();</div>
+<div class="line"><a name="l01925"></a><span class="lineno"> 1925</span>&#160;    <span class="keyword">auto</span>&amp; dm_fine  = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
+<div class="line"><a name="l01926"></a><span class="lineno"> 1926</span>&#160;    <span class="keyword">auto</span>&amp; dm_crse  = crse_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].DistributionMap();</div>
+<div class="line"><a name="l01927"></a><span class="lineno"> 1927</span>&#160; </div>
+<div class="line"><a name="l01928"></a><span class="lineno"> 1928</span>&#160;    <span class="keywordtype">int</span> ncomp = fine_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
+<div class="line"><a name="l01929"></a><span class="lineno"> 1929</span>&#160; </div>
+<div class="line"><a name="l01930"></a><span class="lineno"> 1930</span>&#160;    <a class="code" href="classERF.html#a34160ca20fb400ee285664117cb80512">FPr_c</a>[lev-1].Define(ba_fine, dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01931"></a><span class="lineno"> 1931</span>&#160;                        ba_crse, dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01932"></a><span class="lineno"> 1932</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, ncomp, &amp;cell_cons_interp);</div>
+<div class="line"><a name="l01933"></a><span class="lineno"> 1933</span>&#160;    <a class="code" href="classERF.html#a0ef3455d5b4fc9a178e023b233d389a4">FPr_u</a>[lev-1].Define(convert(ba_fine, IntVect(1,0,0)), dm_fine, geom[lev]  ,</div>
+<div class="line"><a name="l01934"></a><span class="lineno"> 1934</span>&#160;                        convert(ba_crse, IntVect(1,0,0)), dm_crse, geom[lev-1],</div>
+<div class="line"><a name="l01935"></a><span class="lineno"> 1935</span>&#160;                        -<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>, -<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>, 1, &amp;face_cons_linear_interp);</div>
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 <div class="ttc" id="aclassERF_html_a1fcb440c67da60c86372aec1fe871cb7"><div class="ttname"><a href="classERF.html#a1fcb440c67da60c86372aec1fe871cb7">ERF::setPlotVariables</a></div><div class="ttdeci">void setPlotVariables(const std::string &amp;pp_plot_var_names, amrex::Vector&lt; std::string &gt; &amp;plot_var_names)</div><div class="ttdef"><b>Definition:</b> ERF_Plotfile.cpp:17</div></div>
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+<div class="ttc" id="aclassERF_html_a2d39cd3bdc3d90609ad3b14e266d190a"><div class="ttname"><a href="classERF.html#a2d39cd3bdc3d90609ad3b14e266d190a">ERF::ReadParameters</a></div><div class="ttdeci">void ReadParameters()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1394</div></div>
 <div class="ttc" id="aclassERF_html_a3004600e3ebdd453c9e1816ad96209e4"><div class="ttname"><a href="classERF.html#a3004600e3ebdd453c9e1816ad96209e4">ERF::ay_new</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; ay_new</div><div class="ttdef"><b>Definition:</b> ERF.H:846</div></div>
 <div class="ttc" id="aclassERF_html_a30dcf40e8f104fb6b6132805d2eff47c"><div class="ttname"><a href="classERF.html#a30dcf40e8f104fb6b6132805d2eff47c">ERF::z_phys_nd_src</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::MultiFab &gt; &gt; z_phys_nd_src</div><div class="ttdef"><b>Definition:</b> ERF.H:837</div></div>
 <div class="ttc" id="aclassERF_html_a37b2a4257df8ff53d4450de47f16ace1"><div class="ttname"><a href="classERF.html#a37b2a4257df8ff53d4450de47f16ace1">ERF::base_state_new</a></div><div class="ttdeci">amrex::Vector&lt; amrex::MultiFab &gt; base_state_new</div><div class="ttdef"><b>Definition:</b> ERF.H:866</div></div>
@@ -5077,7 +5077,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aab5871c91a4d8888c110865e
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 <div class="ttc" id="aclassERF_html_aefa640a036c25b7b770e88a5f838eb2a"><div class="ttname"><a href="classERF.html#aefa640a036c25b7b770e88a5f838eb2a">ERF::istep</a></div><div class="ttdeci">amrex::Vector&lt; int &gt; istep</div><div class="ttdef"><b>Definition:</b> ERF.H:721</div></div>
 <div class="ttc" id="aclassERF_html_af044f075df34caa2a530aa13e1801a5b"><div class="ttname"><a href="classERF.html#af044f075df34caa2a530aa13e1801a5b">ERF::xflux_imask</a></div><div class="ttdeci">amrex::Vector&lt; std::unique_ptr&lt; amrex::iMultiFab &gt; &gt; xflux_imask</div><div class="ttdef"><b>Definition:</b> ERF.H:897</div></div>
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+<div class="ttc" id="aclassERF_html_afc2898daad269536c1a15443abf3fa75"><div class="ttname"><a href="classERF.html#afc2898daad269536c1a15443abf3fa75">ERF::initializeMicrophysics</a></div><div class="ttdeci">void initializeMicrophysics(const int &amp;)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1215</div></div>
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@@ -5660,7 +5660,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a0be12798b46f52fa4b5a995f
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 <div class="ttc" id="aclassERF_html_ad3311c9ceacd17f34bdb5e03cefa33b3"><div class="ttname"><a href="classERF.html#ad3311c9ceacd17f34bdb5e03cefa33b3">ERF::m_plot_int_2</a></div><div class="ttdeci">int m_plot_int_2</div><div class="ttdef"><b>Definition:</b> ERF.H:944</div></div>
 <div class="ttc" id="aclassERF_html_addf62bfc534515447b94e928ac0b7135"><div class="ttname"><a href="classERF.html#addf62bfc534515447b94e928ac0b7135">ERF::m_r2d</a></div><div class="ttdeci">std::unique_ptr&lt; ReadBndryPlanes &gt; m_r2d</div><div class="ttdef"><b>Definition:</b> ERF.H:1164</div></div>
-<div class="ttc" id="aclassERF_html_af2e4de4eaa0f93149c1aefd58dc7068a"><div class="ttname"><a href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF::writeNow</a></div><div class="ttdeci">bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1953</div></div>
+<div class="ttc" id="aclassERF_html_af2e4de4eaa0f93149c1aefd58dc7068a"><div class="ttname"><a href="classERF.html#af2e4de4eaa0f93149c1aefd58dc7068a">ERF::writeNow</a></div><div class="ttdeci">bool writeNow(const amrex::Real cur_time, const amrex::Real dt, const int nstep, const int plot_int, const amrex::Real plot_per)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1970</div></div>
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-<div class="line"><a name="l01350"></a><span class="lineno"> 1350</span>&#160;    <span class="comment">// - This may modify the base state</span></div>
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+<div class="line"><a name="l01305"></a><span class="lineno"> 1305</span>&#160;        <span class="comment">// The base state is initialized by integrating vertically through the</span></div>
+<div class="line"><a name="l01306"></a><span class="lineno"> 1306</span>&#160;        <span class="comment">// input sounding, if the init_sounding_ideal flag is set; otherwise</span></div>
+<div class="line"><a name="l01307"></a><span class="lineno"> 1307</span>&#160;        <span class="comment">// it is set by initHSE()</span></div>
+<div class="line"><a name="l01308"></a><span class="lineno"> 1308</span>&#160; </div>
+<div class="line"><a name="l01309"></a><span class="lineno"> 1309</span>&#160;        <span class="comment">// The physbc&#39;s need the terrain but are needed for initHSE</span></div>
+<div class="line"><a name="l01310"></a><span class="lineno"> 1310</span>&#160;        <span class="comment">// We have already made the terrain in the call to init_zphys</span></div>
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+<div class="line"><a name="l01316"></a><span class="lineno"> 1316</span>&#160; </div>
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+<div class="line"><a name="l01346"></a><span class="lineno"> 1346</span>&#160;        <a class="code" href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">make_physbcs</a>(lev);</div>
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+<div class="line"><a name="l01352"></a><span class="lineno"> 1352</span>&#160;        <span class="comment">// background field to be equal to the base state, calculated from the</span></div>
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 <div class="line"><a name="l01354"></a><span class="lineno"> 1354</span>&#160; </div>
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-<div class="line"><a name="l01358"></a><span class="lineno"> 1358</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].OverrideSync(geom[lev].periodicity());</div>
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-<div class="line"><a name="l01360"></a><span class="lineno"> 1360</span>&#160; </div>
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+<div class="line"><a name="l01369"></a><span class="lineno"> 1369</span>&#160;    <span class="comment">//   background flow set based on init_type</span></div>
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@@ -8261,7 +8261,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a80981e20939a6a38ba17478d
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+<div class="ttc" id="aclassERF_html_ac81ec7f74a1be1c4a1e6e15e08385ed5"><div class="ttname"><a href="classERF.html#ac81ec7f74a1be1c4a1e6e15e08385ed5">ERF::make_physbcs</a></div><div class="ttdeci">void make_physbcs(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:610</div></div>
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@@ -8353,337 +8353,335 @@ <h2 class="memtitle"><span class="permalink"><a href="#aaf237fbe118d80f149295c05
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-<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;         <a class="code" href="classERF.html#ade870f983d113c64406bdcb8a9194044">ay</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,1,0)),dm,1,1);</div>
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-<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160; </div>
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+<div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;        {</div>
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+<div class="line"><a name="l00052"></a><span class="lineno">   52</span>&#160;            <a class="code" href="classERF.html#a9a411e0ea9d9bdbfab957c8081229091">detJ_cc_src</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba,dm,1,1);</div>
+<div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160; </div>
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+<div class="line"><a name="l00055"></a><span class="lineno">   55</span>&#160;            <a class="code" href="classERF.html#aa20bd15dbe2c801bda2d3bfdb5b81eab">ay_src</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,1,0)),dm,1,1);</div>
+<div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;            <a class="code" href="classERF.html#ad2d8e37fbdac323eda857e0b8c151852">az_src</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,0,1)),dm,1,1);</div>
+<div class="line"><a name="l00057"></a><span class="lineno">   57</span>&#160; </div>
+<div class="line"><a name="l00058"></a><span class="lineno">   58</span>&#160;            <a class="code" href="classERF.html#adf9043b29880747cfe0cf12ab19bf4ae">ax_new</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(1,0,0)),dm,1,1);</div>
+<div class="line"><a name="l00059"></a><span class="lineno">   59</span>&#160;            <a class="code" href="classERF.html#a3004600e3ebdd453c9e1816ad96209e4">ay_new</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,1,0)),dm,1,1);</div>
+<div class="line"><a name="l00060"></a><span class="lineno">   60</span>&#160;            <a class="code" href="classERF.html#aa47ddd3bee550c3c1b5a93a788252d8c">az_new</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,0,1)),dm,1,1);</div>
+<div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160; </div>
+<div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;            <a class="code" href="classERF.html#a72a59614c6d5ab840b924c84d5682270">z_t_rk</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba, IntVect(0,0,1)), dm, 1, 1 );</div>
+<div class="line"><a name="l00063"></a><span class="lineno">   63</span>&#160;        }</div>
+<div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160; </div>
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+<div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;        ba_nd.surroundingNodes();</div>
+<div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160; </div>
+<div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;        <span class="comment">// We need this to be one greater than the ghost cells to handle levels &gt; 0</span></div>
+<div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;        <span class="keywordtype">int</span> ngrow = <a class="code" href="classERF.html#ae68b1f54d196d0a4b19716d65a59d4c5">ComputeGhostCells</a>(<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aaadbd092e9e176b7f088c7992c866c6e">advChoice</a>, <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a8d039800497a1e5084afeef94d367932">use_num_diff</a>) + 2;</div>
+<div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;        tmp_zphys_nd = std::make_unique&lt;MultiFab&gt;(ba_nd,dm,1,IntVect(ngrow,ngrow,ngrow));</div>
+<div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160; </div>
+<div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh) {</div>
+<div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;            <a class="code" href="classERF.html#a4ef635c22e72c715f5703a6b95a7abe5">z_phys_nd_new</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba_nd,dm,1,IntVect(ngrow,ngrow,ngrow));</div>
+<div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;            <a class="code" href="classERF.html#a30dcf40e8f104fb6b6132805d2eff47c">z_phys_nd_src</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba_nd,dm,1,IntVect(ngrow,ngrow,ngrow));</div>
+<div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;        }</div>
+<div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160; </div>
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+<div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160; </div>
+<div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;        <a class="code" href="classERF.html#a4ef635c22e72c715f5703a6b95a7abe5">z_phys_nd_new</a>[lev] = <span class="keyword">nullptr</span>;</div>
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+<div class="line"><a name="l00083"></a><span class="lineno">   83</span>&#160; </div>
+<div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;        <a class="code" href="classERF.html#a30dcf40e8f104fb6b6132805d2eff47c">z_phys_nd_src</a>[lev] = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;          <a class="code" href="classERF.html#a9a411e0ea9d9bdbfab957c8081229091">detJ_cc_src</a>[lev] = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160; </div>
+<div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;               <a class="code" href="classERF.html#a72a59614c6d5ab840b924c84d5682270">z_t_rk</a>[lev] = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00088"></a><span class="lineno">   88</span>&#160;    }</div>
+<div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160; </div>
+<div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">SolverChoice::terrain_type</a> == TerrainType::ImmersedForcing)</div>
+<div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;    {</div>
+<div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;        <a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba,dm,1,1);</div>
+<div class="line"><a name="l00093"></a><span class="lineno">   93</span>&#160;        <a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    }</div>
+<div class="line"><a name="l00095"></a><span class="lineno">   95</span>&#160; </div>
+<div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;    <span class="comment">// We use these area arrays regardless of terrain, EB or none of the above</span></div>
+<div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;    <a class="code" href="classERF.html#a30f8b851ed29d38695d44cff257f14e6">detJ_cc</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba,dm,1,1);</div>
+<div class="line"><a name="l00098"></a><span class="lineno">   98</span>&#160;         <a class="code" href="classERF.html#a93bc9185c89cbeaceffaf40b8cf4a75c">ax</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(1,0,0)),dm,1,1);</div>
+<div class="line"><a name="l00099"></a><span class="lineno">   99</span>&#160;         <a class="code" href="classERF.html#ade870f983d113c64406bdcb8a9194044">ay</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,1,0)),dm,1,1);</div>
+<div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;         <a class="code" href="classERF.html#a391914523e66645f7e947cefcd19c011">az</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba,IntVect(0,0,1)),dm,1,1);</div>
+<div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160; </div>
+<div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    <a class="code" href="classERF.html#a30f8b851ed29d38695d44cff257f14e6">detJ_cc</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;         <a class="code" href="classERF.html#a93bc9185c89cbeaceffaf40b8cf4a75c">ax</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00104"></a><span class="lineno">  104</span>&#160;         <a class="code" href="classERF.html#ade870f983d113c64406bdcb8a9194044">ay</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00105"></a><span class="lineno">  105</span>&#160;         <a class="code" href="classERF.html#a391914523e66645f7e947cefcd19c011">az</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160; </div>
+<div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    <span class="comment">// Create wall distance array for RANS modeling</span></div>
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-<div class="line"><a name="l00110"></a><span class="lineno">  110</span>&#160;    <span class="comment">// Create wall distance array for RANS modeling</span></div>
-<div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
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-<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    } <span class="keywordflow">else</span> {</div>
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-<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160; </div>
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+<div class="line"><a name="l00113"></a><span class="lineno">  113</span>&#160;    } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;        <a class="code" href="classERF.html#a0276b556fdefec8b99be95846a3a35fe">walldist</a>[lev] = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;    }</div>
+<div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160; </div>
+<div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;    <span class="comment">// These are the persistent containers for the old and new data</span></div>
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-<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;    <span class="comment">//     so that we can go back in forth between velocity and momentum on all faces</span></div>
-<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
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-<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    <span class="keywordtype">int</span> ngrow_vels  = <a class="code" href="classERF.html#ae68b1f54d196d0a4b19716d65a59d4c5">ComputeGhostCells</a>(<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aaadbd092e9e176b7f088c7992c866c6e">advChoice</a>, <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a8d039800497a1e5084afeef94d367932">use_num_diff</a>);</div>
-<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160; </div>
+<div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;    <span class="keywordtype">int</span> ncomp;</div>
+<div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;    <span class="keywordflow">if</span> (lev &gt; 0) {</div>
+<div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;        ncomp = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev-1][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
+<div class="line"><a name="l00123"></a><span class="lineno">  123</span>&#160;    } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00124"></a><span class="lineno">  124</span>&#160;        <span class="keywordtype">int</span> n_qstate   = <a class="code" href="classERF.html#a4b7277d54649219f31fe286eee9d415a">micro</a>-&gt;Get_Qstate_Size();</div>
+<div class="line"><a name="l00125"></a><span class="lineno">  125</span>&#160;        ncomp = <a class="code" href="ERF__IndexDefines_8H.html#a38d6fda9ca3d40309838c64d398b54c1">NDRY</a> + <a class="code" href="ERF__IndexDefines_8H.html#a6773f201eef9644a5d5b7252f6d95ce9">NSCALARS</a> + n_qstate;</div>
+<div class="line"><a name="l00126"></a><span class="lineno">  126</span>&#160;    }</div>
+<div class="line"><a name="l00127"></a><span class="lineno">  127</span>&#160; </div>
+<div class="line"><a name="l00128"></a><span class="lineno">  128</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00129"></a><span class="lineno">  129</span>&#160;    <span class="comment">// The number of ghost cells for density must be 1 greater than that for velocity</span></div>
+<div class="line"><a name="l00130"></a><span class="lineno">  130</span>&#160;    <span class="comment">//     so that we can go back in forth between velocity and momentum on all faces</span></div>
+<div class="line"><a name="l00131"></a><span class="lineno">  131</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00132"></a><span class="lineno">  132</span>&#160;    <span class="keywordtype">int</span> ngrow_state = <a class="code" href="classERF.html#ae68b1f54d196d0a4b19716d65a59d4c5">ComputeGhostCells</a>(<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aaadbd092e9e176b7f088c7992c866c6e">advChoice</a>, <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a8d039800497a1e5084afeef94d367932">use_num_diff</a>) + 1;</div>
+<div class="line"><a name="l00133"></a><span class="lineno">  133</span>&#160;    <span class="keywordtype">int</span> ngrow_vels  = <a class="code" href="classERF.html#ae68b1f54d196d0a4b19716d65a59d4c5">ComputeGhostCells</a>(<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aaadbd092e9e176b7f088c7992c866c6e">advChoice</a>, <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a8d039800497a1e5084afeef94d367932">use_num_diff</a>);</div>
+<div class="line"><a name="l00134"></a><span class="lineno">  134</span>&#160; </div>
+<div class="line"><a name="l00135"></a><span class="lineno">  135</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00136"></a><span class="lineno">  136</span>&#160;    <span class="comment">// New solution data containers</span></div>
 <div class="line"><a name="l00137"></a><span class="lineno">  137</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
-<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    <span class="comment">// New solution data containers</span></div>
-<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
-<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].define(ba, dm, ncomp, ngrow_state);</div>
-<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].define(ba, dm, ncomp, ngrow_state);</div>
-<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160; </div>
-<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160; </div>
-<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160; </div>
-<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;    <span class="comment">// Note that we need the ghost cells in the z-direction if we are doing any</span></div>
-<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    <span class="comment">// kind of domain decomposition in the vertical (at level 0 or above)</span></div>
-<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160; </div>
-<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aa7be0d60ce3de3441d44082cc1b725ec">anelastic</a>[lev] == 1) {</div>
-<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;        <a class="code" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5">pp_inc</a>[lev].define(ba, dm, 1, 1);</div>
-<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160;        <a class="code" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5">pp_inc</a>[lev].setVal(0.0);</div>
-<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    }</div>
-<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160; </div>
+<div class="line"><a name="l00138"></a><span class="lineno">  138</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].define(ba, dm, ncomp, ngrow_state);</div>
+<div class="line"><a name="l00139"></a><span class="lineno">  139</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].define(ba, dm, ncomp, ngrow_state);</div>
+<div class="line"><a name="l00140"></a><span class="lineno">  140</span>&#160; </div>
+<div class="line"><a name="l00141"></a><span class="lineno">  141</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00142"></a><span class="lineno">  142</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00143"></a><span class="lineno">  143</span>&#160; </div>
+<div class="line"><a name="l00144"></a><span class="lineno">  144</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00145"></a><span class="lineno">  145</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00146"></a><span class="lineno">  146</span>&#160; </div>
+<div class="line"><a name="l00147"></a><span class="lineno">  147</span>&#160;    <span class="comment">// Note that we need the ghost cells in the z-direction if we are doing any</span></div>
+<div class="line"><a name="l00148"></a><span class="lineno">  148</span>&#160;    <span class="comment">// kind of domain decomposition in the vertical (at level 0 or above)</span></div>
+<div class="line"><a name="l00149"></a><span class="lineno">  149</span>&#160;    lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00150"></a><span class="lineno">  150</span>&#160;    lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00151"></a><span class="lineno">  151</span>&#160; </div>
+<div class="line"><a name="l00152"></a><span class="lineno">  152</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aa7be0d60ce3de3441d44082cc1b725ec">anelastic</a>[lev] == 1) {</div>
+<div class="line"><a name="l00153"></a><span class="lineno">  153</span>&#160;        <a class="code" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5">pp_inc</a>[lev].define(ba, dm, 1, 1);</div>
+<div class="line"><a name="l00154"></a><span class="lineno">  154</span>&#160;        <a class="code" href="classERF.html#a0c5206542d4193bb687f5271be6fe5e5">pp_inc</a>[lev].setVal(0.0);</div>
+<div class="line"><a name="l00155"></a><span class="lineno">  155</span>&#160;    }</div>
+<div class="line"><a name="l00156"></a><span class="lineno">  156</span>&#160; </div>
+<div class="line"><a name="l00157"></a><span class="lineno">  157</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00158"></a><span class="lineno">  158</span>&#160;    <span class="comment">// These are just used for scratch in the time integrator but we might as well define them here</span></div>
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-<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160;    <a class="code" href="classERF.html#a6eecc44323f77917c95869928284f61d">rU_old</a>[lev].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00163"></a><span class="lineno">  163</span>&#160;    <a class="code" href="classERF.html#a01f3db32272f53dc68025f0a98195e57">rU_new</a>[lev].define(convert(ba, IntVect(1,0,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160; </div>
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-<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    <a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>[lev].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160; </div>
-<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160;    <a class="code" href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">rW_old</a>[lev].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    <a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>[lev].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
-<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160; </div>
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+<div class="line"><a name="l00162"></a><span class="lineno">  162</span>&#160; </div>
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+<div class="line"><a name="l00164"></a><span class="lineno">  164</span>&#160;    <a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>[lev].define(convert(ba, IntVect(0,1,0)), dm, 1, ngrow_vels);</div>
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+<div class="line"><a name="l00166"></a><span class="lineno">  166</span>&#160;    <a class="code" href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">rW_old</a>[lev].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00167"></a><span class="lineno">  167</span>&#160;    <a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>[lev].define(convert(ba, IntVect(0,0,1)), dm, 1, ngrow_vels);</div>
+<div class="line"><a name="l00168"></a><span class="lineno">  168</span>&#160; </div>
+<div class="line"><a name="l00169"></a><span class="lineno">  169</span>&#160;    <span class="keywordflow">if</span> (lev &gt; 0) {</div>
+<div class="line"><a name="l00170"></a><span class="lineno">  170</span>&#160;        <span class="comment">//xmom_crse_rhs[lev].define(convert(ba, IntVect(1,0,0)), dm, 1, IntVect{0});</span></div>
+<div class="line"><a name="l00171"></a><span class="lineno">  171</span>&#160;        <span class="comment">//ymom_crse_rhs[lev].define(convert(ba, IntVect(0,1,0)), dm, 1, IntVect{0});</span></div>
+<div class="line"><a name="l00172"></a><span class="lineno">  172</span>&#160;        <a class="code" href="classERF.html#aaf7e8e28172eebdfe2224e4ee823310d">zmom_crse_rhs</a>[lev].define(convert(ba, IntVect(0,0,1)), dm, 1, IntVect{0});</div>
+<div class="line"><a name="l00173"></a><span class="lineno">  173</span>&#160;    }</div>
+<div class="line"><a name="l00174"></a><span class="lineno">  174</span>&#160; </div>
+<div class="line"><a name="l00175"></a><span class="lineno">  175</span>&#160;    <span class="comment">// We do this here just so they won&#39;t be undefined in the initial FillPatch</span></div>
+<div class="line"><a name="l00176"></a><span class="lineno">  176</span>&#160;    <a class="code" href="classERF.html#a6eecc44323f77917c95869928284f61d">rU_old</a>[lev].setVal(1.2e21);</div>
+<div class="line"><a name="l00177"></a><span class="lineno">  177</span>&#160;    <a class="code" href="classERF.html#aeb64e3b4def989ce68d873aefeed5e0e">rV_old</a>[lev].setVal(3.4e22);</div>
+<div class="line"><a name="l00178"></a><span class="lineno">  178</span>&#160;    <a class="code" href="classERF.html#ac1fa56ec90f44e3cdf487af46804163f">rW_old</a>[lev].setVal(5.6e23);</div>
+<div class="line"><a name="l00179"></a><span class="lineno">  179</span>&#160;    <a class="code" href="classERF.html#a01f3db32272f53dc68025f0a98195e57">rU_new</a>[lev].setVal(1.2e21);</div>
+<div class="line"><a name="l00180"></a><span class="lineno">  180</span>&#160;    <a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>[lev].setVal(3.4e22);</div>
+<div class="line"><a name="l00181"></a><span class="lineno">  181</span>&#160;    <a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>[lev].setVal(5.6e23);</div>
+<div class="line"><a name="l00182"></a><span class="lineno">  182</span>&#160; </div>
+<div class="line"><a name="l00183"></a><span class="lineno">  183</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00184"></a><span class="lineno">  184</span>&#160;    <span class="comment">// These are just time averaged fields for diagnostics</span></div>
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-<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
-<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160; </div>
-<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;    <span class="comment">// NOTE: We are not completing a fillpach call on the time averaged data;</span></div>
-<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;    <span class="comment">//       which would copy on intersection and interpolate from coarse.</span></div>
-<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;    <span class="comment">//       Therefore, we are restarting the averaging when the ba changes,</span></div>
-<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;    <span class="comment">//       this may give poor statistics for dynamic mesh refinement.</span></div>
-<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;    <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev] = <span class="keyword">nullptr</span>;</div>
-<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af3119a4089367206db9fc3a17664e874">time_avg_vel</a>) {</div>
-<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba, dm, 4, 0); <span class="comment">// Each vel comp and the mag</span></div>
-<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;        <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev]-&gt;setVal(0.0);</div>
-<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160;        <a class="code" href="classERF.html#a6837423e9248e923fcaa1987b59d8160">t_avg_cnt</a>[lev] = 0.0;</div>
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-<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160; </div>
+<div class="line"><a name="l00186"></a><span class="lineno">  186</span>&#160; </div>
+<div class="line"><a name="l00187"></a><span class="lineno">  187</span>&#160;    <span class="comment">// NOTE: We are not completing a fillpach call on the time averaged data;</span></div>
+<div class="line"><a name="l00188"></a><span class="lineno">  188</span>&#160;    <span class="comment">//       which would copy on intersection and interpolate from coarse.</span></div>
+<div class="line"><a name="l00189"></a><span class="lineno">  189</span>&#160;    <span class="comment">//       Therefore, we are restarting the averaging when the ba changes,</span></div>
+<div class="line"><a name="l00190"></a><span class="lineno">  190</span>&#160;    <span class="comment">//       this may give poor statistics for dynamic mesh refinement.</span></div>
+<div class="line"><a name="l00191"></a><span class="lineno">  191</span>&#160;    <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev] = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00192"></a><span class="lineno">  192</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af3119a4089367206db9fc3a17664e874">time_avg_vel</a>) {</div>
+<div class="line"><a name="l00193"></a><span class="lineno">  193</span>&#160;        <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba, dm, 4, 0); <span class="comment">// Each vel comp and the mag</span></div>
+<div class="line"><a name="l00194"></a><span class="lineno">  194</span>&#160;        <a class="code" href="classERF.html#a3e146164ca6929ec6d4984b6a3f43c81">vel_t_avg</a>[lev]-&gt;setVal(0.0);</div>
+<div class="line"><a name="l00195"></a><span class="lineno">  195</span>&#160;        <a class="code" href="classERF.html#a6837423e9248e923fcaa1987b59d8160">t_avg_cnt</a>[lev] = 0.0;</div>
+<div class="line"><a name="l00196"></a><span class="lineno">  196</span>&#160;    }</div>
+<div class="line"><a name="l00197"></a><span class="lineno">  197</span>&#160; </div>
+<div class="line"><a name="l00198"></a><span class="lineno">  198</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00199"></a><span class="lineno">  199</span>&#160;    <span class="comment">// Initialize flux registers whenever we create/re-create a level</span></div>
 <div class="line"><a name="l00200"></a><span class="lineno">  200</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
-<div class="line"><a name="l00201"></a><span class="lineno">  201</span>&#160;    <span class="comment">// Initialize flux registers whenever we create/re-create a level</span></div>
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-<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
-<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;            <a class="code" href="classERF.html#a86a0bc8e41668411ee0ab5801d4688a7">advflux_reg</a>[0] = <span class="keyword">nullptr</span>;</div>
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-<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;            <a class="code" href="classERF.html#a86a0bc8e41668411ee0ab5801d4688a7">advflux_reg</a>[lev] = <span class="keyword">new</span> YAFluxRegister(ba       , grids[lev-1],</div>
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+<div class="line"><a name="l00202"></a><span class="lineno">  202</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
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+<div class="line"><a name="l00204"></a><span class="lineno">  204</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00205"></a><span class="lineno">  205</span>&#160;            <span class="keywordtype">int</span> ncomp_reflux = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[0][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
+<div class="line"><a name="l00206"></a><span class="lineno">  206</span>&#160;            <a class="code" href="classERF.html#a86a0bc8e41668411ee0ab5801d4688a7">advflux_reg</a>[lev] = <span class="keyword">new</span> YAFluxRegister(ba       , grids[lev-1],</div>
+<div class="line"><a name="l00207"></a><span class="lineno">  207</span>&#160;                                                  dm       ,  dmap[lev-1],</div>
+<div class="line"><a name="l00208"></a><span class="lineno">  208</span>&#160;                                                  geom[lev],  geom[lev-1],</div>
+<div class="line"><a name="l00209"></a><span class="lineno">  209</span>&#160;                                                  ref_ratio[lev-1], lev, ncomp_reflux);</div>
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+<div class="line"><a name="l00213"></a><span class="lineno">  213</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00214"></a><span class="lineno">  214</span>&#160;    <span class="comment">// Define Theta_prim storage if using MOST BC</span></div>
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-<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;        <a class="code" href="classERF.html#a71629ae2fda396472198691b75d83b2e">Theta_prim</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba,dm,1,IntVect(ngrow_state,ngrow_state,0));</div>
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-<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;            <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>[lev]    = <span class="keyword">nullptr</span>;</div>
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-<div class="line"><a name="l00229"></a><span class="lineno">  229</span>&#160;        <a class="code" href="classERF.html#a521d1faf157e3bccc86c0f26ee923576">Qv_prim</a>[lev]    = <span class="keyword">nullptr</span>;</div>
-<div class="line"><a name="l00230"></a><span class="lineno">  230</span>&#160;        <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>[lev]    = <span class="keyword">nullptr</span>;</div>
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+<div class="line"><a name="l00217"></a><span class="lineno">  217</span>&#160;        <a class="code" href="classERF.html#a71629ae2fda396472198691b75d83b2e">Theta_prim</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba,dm,1,IntVect(ngrow_state,ngrow_state,0));</div>
+<div class="line"><a name="l00218"></a><span class="lineno">  218</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aacbfbe6f4a3040db3efdc6dbf8fa291b">moisture_type</a> != MoistureType::None) {</div>
+<div class="line"><a name="l00219"></a><span class="lineno">  219</span>&#160;            <a class="code" href="classERF.html#a521d1faf157e3bccc86c0f26ee923576">Qv_prim</a>[lev]    = std::make_unique&lt;MultiFab&gt;(ba,dm,1,IntVect(ngrow_state,ngrow_state,0));</div>
+<div class="line"><a name="l00220"></a><span class="lineno">  220</span>&#160;            <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>[lev]    = std::make_unique&lt;MultiFab&gt;(ba,dm,1,IntVect(ngrow_state,ngrow_state,0));</div>
+<div class="line"><a name="l00221"></a><span class="lineno">  221</span>&#160;        } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l00223"></a><span class="lineno">  223</span>&#160;            <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>[lev]    = <span class="keyword">nullptr</span>;</div>
+<div class="line"><a name="l00224"></a><span class="lineno">  224</span>&#160;        }</div>
+<div class="line"><a name="l00225"></a><span class="lineno">  225</span>&#160;    } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l00228"></a><span class="lineno">  228</span>&#160;        <a class="code" href="classERF.html#a57d8432920785f8e58cf11a3232d76b5">Qr_prim</a>[lev]    = <span class="keyword">nullptr</span>;</div>
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 <div class="line"><a name="l00233"></a><span class="lineno">  233</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
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-<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;    <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_mf,dm,1,3);</div>
-<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;    <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba2d_mf,IntVect(1,0,0)),dm,1,3);</div>
-<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;    <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba2d_mf,IntVect(0,1,0)),dm,1,3);</div>
-<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a9c7942f6ef7cf05115f35702097cf107">test_mapfactor</a>) {</div>
-<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;        <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev]-&gt;setVal(0.5);</div>
-<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;        <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev]-&gt;setVal(0.5);</div>
-<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;        <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev]-&gt;setVal(0.5);</div>
-<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;    }</div>
-<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;    <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;        <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev]-&gt;setVal(1.);</div>
-<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;        <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev]-&gt;setVal(1.);</div>
-<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160;        <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev]-&gt;setVal(1.);</div>
-<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;    }</div>
-<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160; </div>
-<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;<span class="preprocessor">#if defined(ERF_USE_WINDFARM)</span></div>
+<div class="line"><a name="l00234"></a><span class="lineno">  234</span>&#160;    BoxList bl2d_mf = ba.boxList();</div>
+<div class="line"><a name="l00235"></a><span class="lineno">  235</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_mf) {</div>
+<div class="line"><a name="l00236"></a><span class="lineno">  236</span>&#160;        b.setRange(2,0);</div>
+<div class="line"><a name="l00237"></a><span class="lineno">  237</span>&#160;    }</div>
+<div class="line"><a name="l00238"></a><span class="lineno">  238</span>&#160;    BoxArray ba2d_mf(std::move(bl2d_mf));</div>
+<div class="line"><a name="l00239"></a><span class="lineno">  239</span>&#160; </div>
+<div class="line"><a name="l00240"></a><span class="lineno">  240</span>&#160;    <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_mf,dm,1,3);</div>
+<div class="line"><a name="l00241"></a><span class="lineno">  241</span>&#160;    <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba2d_mf,IntVect(1,0,0)),dm,1,3);</div>
+<div class="line"><a name="l00242"></a><span class="lineno">  242</span>&#160;    <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev] = std::make_unique&lt;MultiFab&gt;(convert(ba2d_mf,IntVect(0,1,0)),dm,1,3);</div>
+<div class="line"><a name="l00243"></a><span class="lineno">  243</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a9c7942f6ef7cf05115f35702097cf107">test_mapfactor</a>) {</div>
+<div class="line"><a name="l00244"></a><span class="lineno">  244</span>&#160;        <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev]-&gt;setVal(0.5);</div>
+<div class="line"><a name="l00245"></a><span class="lineno">  245</span>&#160;        <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev]-&gt;setVal(0.5);</div>
+<div class="line"><a name="l00246"></a><span class="lineno">  246</span>&#160;        <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev]-&gt;setVal(0.5);</div>
+<div class="line"><a name="l00247"></a><span class="lineno">  247</span>&#160;    }</div>
+<div class="line"><a name="l00248"></a><span class="lineno">  248</span>&#160;    <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00249"></a><span class="lineno">  249</span>&#160;        <a class="code" href="classERF.html#a23aacdb72e9d2dfed8e2ebd2c2526497">mapfac_m</a>[lev]-&gt;setVal(1.);</div>
+<div class="line"><a name="l00250"></a><span class="lineno">  250</span>&#160;        <a class="code" href="classERF.html#a1e8afee1508b720dab56f5d044deb301">mapfac_u</a>[lev]-&gt;setVal(1.);</div>
+<div class="line"><a name="l00251"></a><span class="lineno">  251</span>&#160;        <a class="code" href="classERF.html#ae49b5055f9a7117fa15918a5daa775b7">mapfac_v</a>[lev]-&gt;setVal(1.);</div>
+<div class="line"><a name="l00252"></a><span class="lineno">  252</span>&#160;    }</div>
+<div class="line"><a name="l00253"></a><span class="lineno">  253</span>&#160; </div>
+<div class="line"><a name="l00254"></a><span class="lineno">  254</span>&#160;<span class="preprocessor">#if defined(ERF_USE_WINDFARM)</span></div>
+<div class="line"><a name="l00255"></a><span class="lineno">  255</span>&#160;    <span class="comment">//*********************************************************</span></div>
+<div class="line"><a name="l00256"></a><span class="lineno">  256</span>&#160;    <span class="comment">// Variables for Fitch model for windfarm parametrization</span></div>
 <div class="line"><a name="l00257"></a><span class="lineno">  257</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    <span class="comment">// Variables for Fitch model for windfarm parametrization</span></div>
-<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::Fitch){</div>
-<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;        vars_windfarm[lev].define(ba, dm, 5, ngrow_state); <span class="comment">// V, dVabsdt, dudt, dvdt, dTKEdt</span></div>
-<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;    }</div>
-<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::EWP){</div>
-<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;        vars_windfarm[lev].define(ba, dm, 3, ngrow_state); <span class="comment">// dudt, dvdt, dTKEdt</span></div>
-<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;    }</div>
-<div class="line"><a name="l00266"></a><span class="lineno">  266</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::SimpleAD) {</div>
-<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;        vars_windfarm[lev].define(ba, dm, 2, ngrow_state);<span class="comment">// dudt, dvdt</span></div>
-<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;    }</div>
-<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::GeneralAD) {</div>
-<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;        vars_windfarm[lev].define(ba, dm, 3, ngrow_state);<span class="comment">// dudt, dvdt, dwdt</span></div>
-<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;    }</div>
-<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;        Nturb[lev].define(ba, dm, 1, ngrow_state); <span class="comment">// Number of turbines in a cell</span></div>
-<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;        SMark[lev].define(ba, dm, 2, 1); <span class="comment">// Free stream velocity/source term</span></div>
-<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160;                                                   <span class="comment">// sampling marker in a cell - 2 components</span></div>
-<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160; </div>
-<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160; </div>
-<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;<span class="preprocessor">#ifdef ERF_USE_WW3_COUPLING</span></div>
-<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;    <span class="comment">// create a new BoxArray and DistributionMapping for a MultiFab with 1 box</span></div>
-<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;    BoxArray ba_onegrid(geom[lev].Domain());</div>
-<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;    BoxList bl2d_onegrid = ba_onegrid.boxList();</div>
-<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_onegrid) {</div>
-<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;        b.setRange(2,0);</div>
-<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;    }</div>
-<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;    BoxArray ba2d_onegrid(std::move(bl2d_onegrid));</div>
-<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;    Vector&lt;int&gt; pmap;</div>
-<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;    pmap.resize(1);</div>
-<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;    pmap[0]=0;</div>
-<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160;    DistributionMapping dm_onegrid(ba2d_onegrid);</div>
-<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;    dm_onegrid.define(pmap);</div>
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-<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160;    <a class="code" href="classERF.html#a11f2d48d9af9b8f4574975cae06838f1">Hwave_onegrid</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_onegrid,dm_onegrid,1,IntVect(1,1,0));</div>
-<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;    <a class="code" href="classERF.html#a83473e4b18de294a8b97dcdbbf048551">Lwave_onegrid</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_onegrid,dm_onegrid,1,IntVect(1,1,0));</div>
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-<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;    BoxList bl2d_wave = ba.boxList();</div>
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-<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;    BoxArray ba2d_wave(std::move(bl2d_wave));</div>
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-<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160;    <a class="code" href="classERF.html#aef05cf88e9e9d2b56112336761493977">Hwave</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_wave,dm,1,IntVect(3,3,0));</div>
-<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;    <a class="code" href="classERF.html#ad67b414a1a8b5bab6edeaf574f922825">Lwave</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_wave,dm,1,IntVect(3,3,0));</div>
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-<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    std::cout&lt;&lt;ba_onegrid&lt;&lt;std::endl;</div>
-<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;    std::cout&lt;&lt;ba2d_onegrid&lt;&lt;std::endl;</div>
-<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160;    std::cout&lt;&lt;dm_onegrid&lt;&lt;std::endl;</div>
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-<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;<span class="preprocessor">#if defined(ERF_USE_RRTMGP)</span></div>
+<div class="line"><a name="l00258"></a><span class="lineno">  258</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::Fitch){</div>
+<div class="line"><a name="l00259"></a><span class="lineno">  259</span>&#160;        vars_windfarm[lev].define(ba, dm, 5, ngrow_state); <span class="comment">// V, dVabsdt, dudt, dvdt, dTKEdt</span></div>
+<div class="line"><a name="l00260"></a><span class="lineno">  260</span>&#160;    }</div>
+<div class="line"><a name="l00261"></a><span class="lineno">  261</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::EWP){</div>
+<div class="line"><a name="l00262"></a><span class="lineno">  262</span>&#160;        vars_windfarm[lev].define(ba, dm, 3, ngrow_state); <span class="comment">// dudt, dvdt, dTKEdt</span></div>
+<div class="line"><a name="l00263"></a><span class="lineno">  263</span>&#160;    }</div>
+<div class="line"><a name="l00264"></a><span class="lineno">  264</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::SimpleAD) {</div>
+<div class="line"><a name="l00265"></a><span class="lineno">  265</span>&#160;        vars_windfarm[lev].define(ba, dm, 2, ngrow_state);<span class="comment">// dudt, dvdt</span></div>
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+<div class="line"><a name="l00267"></a><span class="lineno">  267</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ac0a723e8797cdc0fe06b3fc781fca645">windfarm_type</a> == WindFarmType::GeneralAD) {</div>
+<div class="line"><a name="l00268"></a><span class="lineno">  268</span>&#160;        vars_windfarm[lev].define(ba, dm, 3, ngrow_state);<span class="comment">// dudt, dvdt, dwdt</span></div>
+<div class="line"><a name="l00269"></a><span class="lineno">  269</span>&#160;    }</div>
+<div class="line"><a name="l00270"></a><span class="lineno">  270</span>&#160;        Nturb[lev].define(ba, dm, 1, ngrow_state); <span class="comment">// Number of turbines in a cell</span></div>
+<div class="line"><a name="l00271"></a><span class="lineno">  271</span>&#160;        SMark[lev].define(ba, dm, 2, 1); <span class="comment">// Free stream velocity/source term</span></div>
+<div class="line"><a name="l00272"></a><span class="lineno">  272</span>&#160;                                                   <span class="comment">// sampling marker in a cell - 2 components</span></div>
+<div class="line"><a name="l00273"></a><span class="lineno">  273</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00274"></a><span class="lineno">  274</span>&#160; </div>
+<div class="line"><a name="l00275"></a><span class="lineno">  275</span>&#160; </div>
+<div class="line"><a name="l00276"></a><span class="lineno">  276</span>&#160;<span class="preprocessor">#ifdef ERF_USE_WW3_COUPLING</span></div>
+<div class="line"><a name="l00277"></a><span class="lineno">  277</span>&#160;    <span class="comment">// create a new BoxArray and DistributionMapping for a MultiFab with 1 box</span></div>
+<div class="line"><a name="l00278"></a><span class="lineno">  278</span>&#160;    BoxArray ba_onegrid(geom[lev].Domain());</div>
+<div class="line"><a name="l00279"></a><span class="lineno">  279</span>&#160;    BoxList bl2d_onegrid = ba_onegrid.boxList();</div>
+<div class="line"><a name="l00280"></a><span class="lineno">  280</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_onegrid) {</div>
+<div class="line"><a name="l00281"></a><span class="lineno">  281</span>&#160;        b.setRange(2,0);</div>
+<div class="line"><a name="l00282"></a><span class="lineno">  282</span>&#160;    }</div>
+<div class="line"><a name="l00283"></a><span class="lineno">  283</span>&#160;    BoxArray ba2d_onegrid(std::move(bl2d_onegrid));</div>
+<div class="line"><a name="l00284"></a><span class="lineno">  284</span>&#160;    Vector&lt;int&gt; pmap;</div>
+<div class="line"><a name="l00285"></a><span class="lineno">  285</span>&#160;    pmap.resize(1);</div>
+<div class="line"><a name="l00286"></a><span class="lineno">  286</span>&#160;    pmap[0]=0;</div>
+<div class="line"><a name="l00287"></a><span class="lineno">  287</span>&#160;    DistributionMapping dm_onegrid(ba2d_onegrid);</div>
+<div class="line"><a name="l00288"></a><span class="lineno">  288</span>&#160;    dm_onegrid.define(pmap);</div>
+<div class="line"><a name="l00289"></a><span class="lineno">  289</span>&#160; </div>
+<div class="line"><a name="l00290"></a><span class="lineno">  290</span>&#160;    <a class="code" href="classERF.html#a11f2d48d9af9b8f4574975cae06838f1">Hwave_onegrid</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_onegrid,dm_onegrid,1,IntVect(1,1,0));</div>
+<div class="line"><a name="l00291"></a><span class="lineno">  291</span>&#160;    <a class="code" href="classERF.html#a83473e4b18de294a8b97dcdbbf048551">Lwave_onegrid</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_onegrid,dm_onegrid,1,IntVect(1,1,0));</div>
+<div class="line"><a name="l00292"></a><span class="lineno">  292</span>&#160; </div>
+<div class="line"><a name="l00293"></a><span class="lineno">  293</span>&#160;    BoxList bl2d_wave = ba.boxList();</div>
+<div class="line"><a name="l00294"></a><span class="lineno">  294</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_wave) {</div>
+<div class="line"><a name="l00295"></a><span class="lineno">  295</span>&#160;        b.setRange(2,0);</div>
+<div class="line"><a name="l00296"></a><span class="lineno">  296</span>&#160;    }</div>
+<div class="line"><a name="l00297"></a><span class="lineno">  297</span>&#160;    BoxArray ba2d_wave(std::move(bl2d_wave));</div>
+<div class="line"><a name="l00298"></a><span class="lineno">  298</span>&#160; </div>
+<div class="line"><a name="l00299"></a><span class="lineno">  299</span>&#160;    <a class="code" href="classERF.html#aef05cf88e9e9d2b56112336761493977">Hwave</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_wave,dm,1,IntVect(3,3,0));</div>
+<div class="line"><a name="l00300"></a><span class="lineno">  300</span>&#160;    <a class="code" href="classERF.html#ad67b414a1a8b5bab6edeaf574f922825">Lwave</a>[lev] = std::make_unique&lt;MultiFab&gt;(ba2d_wave,dm,1,IntVect(3,3,0));</div>
+<div class="line"><a name="l00301"></a><span class="lineno">  301</span>&#160; </div>
+<div class="line"><a name="l00302"></a><span class="lineno">  302</span>&#160;    std::cout&lt;&lt;ba_onegrid&lt;&lt;std::endl;</div>
+<div class="line"><a name="l00303"></a><span class="lineno">  303</span>&#160;    std::cout&lt;&lt;ba2d_onegrid&lt;&lt;std::endl;</div>
+<div class="line"><a name="l00304"></a><span class="lineno">  304</span>&#160;    std::cout&lt;&lt;dm_onegrid&lt;&lt;std::endl;</div>
+<div class="line"><a name="l00305"></a><span class="lineno">  305</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00306"></a><span class="lineno">  306</span>&#160; </div>
+<div class="line"><a name="l00307"></a><span class="lineno">  307</span>&#160; </div>
+<div class="line"><a name="l00308"></a><span class="lineno">  308</span>&#160;<span class="preprocessor">#if defined(ERF_USE_RRTMGP)</span></div>
+<div class="line"><a name="l00309"></a><span class="lineno">  309</span>&#160;    <span class="comment">//*********************************************************</span></div>
+<div class="line"><a name="l00310"></a><span class="lineno">  310</span>&#160;    <span class="comment">// Radiation heating source terms</span></div>
 <div class="line"><a name="l00311"></a><span class="lineno">  311</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;    <span class="comment">// Radiation heating source terms</span></div>
-<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160;    qheating_rates[lev] = std::make_unique&lt;MultiFab&gt;(ba, dm, 2, ngrow_state);</div>
-<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;    qheating_rates[lev]-&gt;setVal(0.);</div>
-<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160; </div>
+<div class="line"><a name="l00312"></a><span class="lineno">  312</span>&#160;    qheating_rates[lev] = std::make_unique&lt;MultiFab&gt;(ba, dm, 2, ngrow_state);</div>
+<div class="line"><a name="l00313"></a><span class="lineno">  313</span>&#160;    qheating_rates[lev]-&gt;setVal(0.);</div>
+<div class="line"><a name="l00314"></a><span class="lineno">  314</span>&#160; </div>
+<div class="line"><a name="l00315"></a><span class="lineno">  315</span>&#160;    <span class="comment">//*********************************************************</span></div>
+<div class="line"><a name="l00316"></a><span class="lineno">  316</span>&#160;    <span class="comment">// Radiation fluxes for coupling to LSM</span></div>
 <div class="line"><a name="l00317"></a><span class="lineno">  317</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160;    <span class="comment">// Radiation fluxes for coupling to LSM</span></div>
-<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160; </div>
-<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;    <span class="comment">// NOTE: Finer levels do not need to coincide with the bottom domain boundary</span></div>
-<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160;    <span class="comment">//       at k=0. We make slabs here with the kmin for a given box. Therefore,</span></div>
-<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;    <span class="comment">//       care must be taken before applying these fluxes to an LSM model. For</span></div>
-<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160; </div>
-<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;    <span class="comment">// Radiative fluxes for LSM</span></div>
-<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> != LandSurfaceType::None)</div>
-<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;    {</div>
-<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;        BoxList m_bl = ba.boxList();</div>
-<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;        <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : m_bl) {</div>
-<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;            <span class="keywordtype">int</span> kmin = b.smallEnd(2);</div>
-<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;            b.setRange(2,kmin);</div>
-<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160;        }</div>
-<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        BoxArray m_ba(std::move(m_bl));</div>
-<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160; </div>
-<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160;        sw_lw_fluxes[lev] = std::make_unique&lt;MultiFab&gt;(m_ba, dm, 5, ngrow_state); <span class="comment">// SW direct (2), SW diffuse (2), LW</span></div>
-<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        solar_zenith[lev] = std::make_unique&lt;MultiFab&gt;(m_ba, dm, 2, ngrow_state);</div>
-<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160; </div>
-<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;        sw_lw_fluxes[lev]-&gt;setVal(0.);</div>
-<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;        solar_zenith[lev]-&gt;setVal(0.);</div>
-<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160;    }</div>
-<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160; </div>
+<div class="line"><a name="l00318"></a><span class="lineno">  318</span>&#160; </div>
+<div class="line"><a name="l00319"></a><span class="lineno">  319</span>&#160;    <span class="comment">// NOTE: Finer levels do not need to coincide with the bottom domain boundary</span></div>
+<div class="line"><a name="l00320"></a><span class="lineno">  320</span>&#160;    <span class="comment">//       at k=0. We make slabs here with the kmin for a given box. Therefore,</span></div>
+<div class="line"><a name="l00321"></a><span class="lineno">  321</span>&#160;    <span class="comment">//       care must be taken before applying these fluxes to an LSM model. For</span></div>
+<div class="line"><a name="l00322"></a><span class="lineno">  322</span>&#160; </div>
+<div class="line"><a name="l00323"></a><span class="lineno">  323</span>&#160;    <span class="comment">// Radiative fluxes for LSM</span></div>
+<div class="line"><a name="l00324"></a><span class="lineno">  324</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> != LandSurfaceType::None)</div>
+<div class="line"><a name="l00325"></a><span class="lineno">  325</span>&#160;    {</div>
+<div class="line"><a name="l00326"></a><span class="lineno">  326</span>&#160;        BoxList m_bl = ba.boxList();</div>
+<div class="line"><a name="l00327"></a><span class="lineno">  327</span>&#160;        <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : m_bl) {</div>
+<div class="line"><a name="l00328"></a><span class="lineno">  328</span>&#160;            <span class="keywordtype">int</span> kmin = b.smallEnd(2);</div>
+<div class="line"><a name="l00329"></a><span class="lineno">  329</span>&#160;            b.setRange(2,kmin);</div>
+<div class="line"><a name="l00330"></a><span class="lineno">  330</span>&#160;        }</div>
+<div class="line"><a name="l00331"></a><span class="lineno">  331</span>&#160;        BoxArray m_ba(std::move(m_bl));</div>
+<div class="line"><a name="l00332"></a><span class="lineno">  332</span>&#160; </div>
+<div class="line"><a name="l00333"></a><span class="lineno">  333</span>&#160;        sw_lw_fluxes[lev] = std::make_unique&lt;MultiFab&gt;(m_ba, dm, 5, ngrow_state); <span class="comment">// SW direct (2), SW diffuse (2), LW</span></div>
+<div class="line"><a name="l00334"></a><span class="lineno">  334</span>&#160;        solar_zenith[lev] = std::make_unique&lt;MultiFab&gt;(m_ba, dm, 2, ngrow_state);</div>
+<div class="line"><a name="l00335"></a><span class="lineno">  335</span>&#160; </div>
+<div class="line"><a name="l00336"></a><span class="lineno">  336</span>&#160;        sw_lw_fluxes[lev]-&gt;setVal(0.);</div>
+<div class="line"><a name="l00337"></a><span class="lineno">  337</span>&#160;        solar_zenith[lev]-&gt;setVal(0.);</div>
+<div class="line"><a name="l00338"></a><span class="lineno">  338</span>&#160;    }</div>
+<div class="line"><a name="l00339"></a><span class="lineno">  339</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00340"></a><span class="lineno">  340</span>&#160; </div>
+<div class="line"><a name="l00341"></a><span class="lineno">  341</span>&#160;    <span class="comment">//*********************************************************</span></div>
+<div class="line"><a name="l00342"></a><span class="lineno">  342</span>&#160;    <span class="comment">// Turbulent perturbation region initialization</span></div>
 <div class="line"><a name="l00343"></a><span class="lineno">  343</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;    <span class="comment">// Turbulent perturbation region initialization</span></div>
-<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;    <span class="comment">//*********************************************************</span></div>
-<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;    <span class="comment">// TODO: Test perturbation on multiple levels</span></div>
-<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#abfd94767b3721755632c45a5ef290544">pert_type</a> == PerturbationType::Source ||</div>
-<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;        <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#abfd94767b3721755632c45a5ef290544">pert_type</a> == PerturbationType::Direct)</div>
-<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;    {</div>
-<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
-<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;            <a class="code" href="classERF.html#ac1b9cce4a3c1736c4af78f6b0e2143ce">turbPert</a>.<a class="code" href="structTurbulentPerturbation.html#a6f6d1321050b4a5709f3eaecff1a8926">init_tpi</a>(lev, geom[lev].Domain().bigEnd(), geom[lev].CellSizeArray(), ba, dm, ngrow_state);</div>
-<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160;        }</div>
-<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;    }</div>
-<div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160; </div>
-<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;    <span class="comment">//</span></div>
-<div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160;    <span class="comment">// Define the land mask here and set it to all land by default</span></div>
-<div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;    <span class="comment">// NOTE: the logic below will BREAK if we have any grids not touching the bottom boundary</span></div>
-<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;    <span class="comment">//</span></div>
-<div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;    {</div>
-<div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev].resize(1);</div>
-<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;    <span class="keyword">auto</span> ngv = lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect(); ngv[2] = 0;</div>
-<div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;    BoxList bl2d_mask = ba.boxList();</div>
-<div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_mask) {</div>
-<div class="line"><a name="l00364"></a><span class="lineno">  364</span>&#160;        b.setRange(2,0);</div>
-<div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;    }</div>
-<div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160;    BoxArray ba2d_mask(std::move(bl2d_mask));</div>
-<div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0] = std::make_unique&lt;iMultiFab&gt;(ba2d_mask,dm,1,ngv);</div>
-<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;setVal(1);</div>
-<div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;FillBoundary(geom[lev].periodicity());</div>
-<div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;    }</div>
-<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160; </div>
-<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;    <span class="comment">// Read in tables needed for windfarm simulations</span></div>
-<div class="line"><a name="l00373"></a><span class="lineno">  373</span>&#160;    <span class="comment">// fill in Nturb multifab - number of turbines in each mesh cell</span></div>
-<div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;    <span class="comment">// write out the vtk files for wind turbine location and/or</span></div>
-<div class="line"><a name="l00375"></a><span class="lineno">  375</span>&#160;    <span class="comment">// actuator disks</span></div>
-<div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;<span class="preprocessor">    #ifdef ERF_USE_WINDFARM</span></div>
-<div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;        <span class="comment">//init_windfarm(lev);</span></div>
-<div class="line"><a name="l00378"></a><span class="lineno">  378</span>&#160;<span class="preprocessor">    #endif</span></div>
-<div class="line"><a name="l00379"></a><span class="lineno">  379</span>&#160;}</div>
+<div class="line"><a name="l00344"></a><span class="lineno">  344</span>&#160;    <span class="comment">// TODO: Test perturbation on multiple levels</span></div>
+<div class="line"><a name="l00345"></a><span class="lineno">  345</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#abfd94767b3721755632c45a5ef290544">pert_type</a> == PerturbationType::Source ||</div>
+<div class="line"><a name="l00346"></a><span class="lineno">  346</span>&#160;        <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#abfd94767b3721755632c45a5ef290544">pert_type</a> == PerturbationType::Direct)</div>
+<div class="line"><a name="l00347"></a><span class="lineno">  347</span>&#160;    {</div>
+<div class="line"><a name="l00348"></a><span class="lineno">  348</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
+<div class="line"><a name="l00349"></a><span class="lineno">  349</span>&#160;            <a class="code" href="classERF.html#ac1b9cce4a3c1736c4af78f6b0e2143ce">turbPert</a>.<a class="code" href="structTurbulentPerturbation.html#a6f6d1321050b4a5709f3eaecff1a8926">init_tpi</a>(lev, geom[lev].Domain().bigEnd(), geom[lev].CellSizeArray(), ba, dm, ngrow_state);</div>
+<div class="line"><a name="l00350"></a><span class="lineno">  350</span>&#160;        }</div>
+<div class="line"><a name="l00351"></a><span class="lineno">  351</span>&#160;    }</div>
+<div class="line"><a name="l00352"></a><span class="lineno">  352</span>&#160; </div>
+<div class="line"><a name="l00353"></a><span class="lineno">  353</span>&#160;    <span class="comment">//</span></div>
+<div class="line"><a name="l00354"></a><span class="lineno">  354</span>&#160;    <span class="comment">// Define the land mask here and set it to all land by default</span></div>
+<div class="line"><a name="l00355"></a><span class="lineno">  355</span>&#160;    <span class="comment">// NOTE: the logic below will BREAK if we have any grids not touching the bottom boundary</span></div>
+<div class="line"><a name="l00356"></a><span class="lineno">  356</span>&#160;    <span class="comment">//</span></div>
+<div class="line"><a name="l00357"></a><span class="lineno">  357</span>&#160;    {</div>
+<div class="line"><a name="l00358"></a><span class="lineno">  358</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev].resize(1);</div>
+<div class="line"><a name="l00359"></a><span class="lineno">  359</span>&#160;    <span class="keyword">auto</span> ngv = lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect(); ngv[2] = 0;</div>
+<div class="line"><a name="l00360"></a><span class="lineno">  360</span>&#160;    BoxList bl2d_mask = ba.boxList();</div>
+<div class="line"><a name="l00361"></a><span class="lineno">  361</span>&#160;    <span class="keywordflow">for</span> (<span class="keyword">auto</span>&amp; b : bl2d_mask) {</div>
+<div class="line"><a name="l00362"></a><span class="lineno">  362</span>&#160;        b.setRange(2,0);</div>
+<div class="line"><a name="l00363"></a><span class="lineno">  363</span>&#160;    }</div>
+<div class="line"><a name="l00364"></a><span class="lineno">  364</span>&#160;    BoxArray ba2d_mask(std::move(bl2d_mask));</div>
+<div class="line"><a name="l00365"></a><span class="lineno">  365</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0] = std::make_unique&lt;iMultiFab&gt;(ba2d_mask,dm,1,ngv);</div>
+<div class="line"><a name="l00366"></a><span class="lineno">  366</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;setVal(1);</div>
+<div class="line"><a name="l00367"></a><span class="lineno">  367</span>&#160;    <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00368"></a><span class="lineno">  368</span>&#160;    }</div>
+<div class="line"><a name="l00369"></a><span class="lineno">  369</span>&#160; </div>
+<div class="line"><a name="l00370"></a><span class="lineno">  370</span>&#160;    <span class="comment">// Read in tables needed for windfarm simulations</span></div>
+<div class="line"><a name="l00371"></a><span class="lineno">  371</span>&#160;    <span class="comment">// fill in Nturb multifab - number of turbines in each mesh cell</span></div>
+<div class="line"><a name="l00372"></a><span class="lineno">  372</span>&#160;    <span class="comment">// write out the vtk files for wind turbine location and/or</span></div>
+<div class="line"><a name="l00373"></a><span class="lineno">  373</span>&#160;    <span class="comment">// actuator disks</span></div>
+<div class="line"><a name="l00374"></a><span class="lineno">  374</span>&#160;<span class="preprocessor">    #ifdef ERF_USE_WINDFARM</span></div>
+<div class="line"><a name="l00375"></a><span class="lineno">  375</span>&#160;        <span class="comment">//init_windfarm(lev);</span></div>
+<div class="line"><a name="l00376"></a><span class="lineno">  376</span>&#160;<span class="preprocessor">    #endif</span></div>
+<div class="line"><a name="l00377"></a><span class="lineno">  377</span>&#160;}</div>
 <div class="ttc" id="aERF__IndexDefines_8H_html_a38d6fda9ca3d40309838c64d398b54c1"><div class="ttname"><a href="ERF__IndexDefines_8H.html#a38d6fda9ca3d40309838c64d398b54c1">NDRY</a></div><div class="ttdeci">#define NDRY</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:13</div></div>
 <div class="ttc" id="aclassERF_html_ae68b1f54d196d0a4b19716d65a59d4c5"><div class="ttname"><a href="classERF.html#ae68b1f54d196d0a4b19716d65a59d4c5">ERF::ComputeGhostCells</a></div><div class="ttdeci">static AMREX_FORCE_INLINE int ComputeGhostCells(const AdvChoice &amp;advChoice, bool use_num_diff)</div><div class="ttdef"><b>Definition:</b> ERF.H:1183</div></div>
 <div class="ttc" id="anamespaceBaseState_html_a6f8dc3597225ea7941dad615e7f22e91a088c1232c30770df1105d3cdf66ee582"><div class="ttname"><a href="namespaceBaseState.html#a6f8dc3597225ea7941dad615e7f22e91a088c1232c30770df1105d3cdf66ee582">BaseState::num_comps</a></div><div class="ttdeci">@ num_comps</div><div class="ttdef"><b>Definition:</b> ERF_IndexDefines.H:67</div></div>
@@ -8906,74 +8904,74 @@ <h2 class="memtitle"><span class="permalink"><a href="#a8f50cd1ba85fbf9ae0579a56
         </tr>
       </table>
 </div><div class="memdoc">
-<div class="fragment"><div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;{</div>
-<div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> != InitType::Real &amp;&amp; <a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> != InitType::Metgrid)</div>
-<div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;    {</div>
-<div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;        <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]) {</div>
-<div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;            <span class="comment">//</span></div>
-<div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;            <span class="comment">// First interpolate from coarser level if there is one</span></div>
-<div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;            <span class="comment">// NOTE: this interpolater assumes that ALL ghost cells of the coarse MultiFab</span></div>
-<div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;            <span class="comment">//       have been pre-filled - this includes ghost cells both inside and outside</span></div>
-<div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;            <span class="comment">//       the domain</span></div>
-<div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160;            <span class="comment">//</span></div>
-<div class="line"><a name="l00484"></a><span class="lineno">  484</span>&#160;            InterpFromCoarseLevel(*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;nGrowVect(),</div>
-<div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;                                  IntVect(0,0,0), <span class="comment">// do not fill ghost cells outside the domain</span></div>
-<div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;                                  *<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev-1], 0, 0, 1,</div>
-<div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;                                  geom[lev-1], geom[lev],</div>
-<div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;                                  refRatio(lev-1), &amp;node_bilinear_interp,</div>
-<div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160;                                  <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>);</div>
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-<div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160; </div>
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-<div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160;        Box bx(surroundingNodes(Geom(0).Domain())); bx.grow(ngrow);</div>
-<div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;        FArrayBox terrain_fab(makeSlab(bx,2,0),1);</div>
-<div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160; </div>
-<div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;        <span class="comment">// If we are using fitted mesh then we use the surface as defined above</span></div>
-<div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;        <span class="comment">// If we are not using fitted mesh but are using z_levels, we still need z_phys (for now)</span></div>
-<div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;        <span class="comment">//    but we need to use a flat terrain for the mesh itself (the EB data has already been made</span></div>
-<div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;        <span class="comment">//    from the correct terrain)</span></div>
-<div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> != TerrainType::StaticFittedMesh &amp;&amp;</div>
-<div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;            <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> != TerrainType::MovingFittedMesh) {</div>
-<div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;                terrain_fab.template setVal&lt;RunOn::Device&gt;(0.0);</div>
-<div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="fragment"><div class="line"><a name="l00472"></a><span class="lineno">  472</span>&#160;{</div>
+<div class="line"><a name="l00473"></a><span class="lineno">  473</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> != InitType::Real &amp;&amp; <a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> != InitType::Metgrid)</div>
+<div class="line"><a name="l00474"></a><span class="lineno">  474</span>&#160;    {</div>
+<div class="line"><a name="l00475"></a><span class="lineno">  475</span>&#160;        <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]) {</div>
+<div class="line"><a name="l00476"></a><span class="lineno">  476</span>&#160;            <span class="comment">//</span></div>
+<div class="line"><a name="l00477"></a><span class="lineno">  477</span>&#160;            <span class="comment">// First interpolate from coarser level if there is one</span></div>
+<div class="line"><a name="l00478"></a><span class="lineno">  478</span>&#160;            <span class="comment">// NOTE: this interpolater assumes that ALL ghost cells of the coarse MultiFab</span></div>
+<div class="line"><a name="l00479"></a><span class="lineno">  479</span>&#160;            <span class="comment">//       have been pre-filled - this includes ghost cells both inside and outside</span></div>
+<div class="line"><a name="l00480"></a><span class="lineno">  480</span>&#160;            <span class="comment">//       the domain</span></div>
+<div class="line"><a name="l00481"></a><span class="lineno">  481</span>&#160;            <span class="comment">//</span></div>
+<div class="line"><a name="l00482"></a><span class="lineno">  482</span>&#160;            InterpFromCoarseLevel(*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;nGrowVect(),</div>
+<div class="line"><a name="l00483"></a><span class="lineno">  483</span>&#160;                                  IntVect(0,0,0), <span class="comment">// do not fill ghost cells outside the domain</span></div>
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+<div class="line"><a name="l00485"></a><span class="lineno">  485</span>&#160;                                  geom[lev-1], geom[lev],</div>
+<div class="line"><a name="l00486"></a><span class="lineno">  486</span>&#160;                                  refRatio(lev-1), &amp;node_bilinear_interp,</div>
+<div class="line"><a name="l00487"></a><span class="lineno">  487</span>&#160;                                  <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>);</div>
+<div class="line"><a name="l00488"></a><span class="lineno">  488</span>&#160;        }</div>
+<div class="line"><a name="l00489"></a><span class="lineno">  489</span>&#160; </div>
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+<div class="line"><a name="l00491"></a><span class="lineno">  491</span>&#160;        Box bx(surroundingNodes(Geom(0).Domain())); bx.grow(ngrow);</div>
+<div class="line"><a name="l00492"></a><span class="lineno">  492</span>&#160;        FArrayBox terrain_fab(makeSlab(bx,2,0),1);</div>
+<div class="line"><a name="l00493"></a><span class="lineno">  493</span>&#160; </div>
+<div class="line"><a name="l00494"></a><span class="lineno">  494</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00495"></a><span class="lineno">  495</span>&#160;        <span class="comment">// If we are using fitted mesh then we use the surface as defined above</span></div>
+<div class="line"><a name="l00496"></a><span class="lineno">  496</span>&#160;        <span class="comment">// If we are not using fitted mesh but are using z_levels, we still need z_phys (for now)</span></div>
+<div class="line"><a name="l00497"></a><span class="lineno">  497</span>&#160;        <span class="comment">//    but we need to use a flat terrain for the mesh itself (the EB data has already been made</span></div>
+<div class="line"><a name="l00498"></a><span class="lineno">  498</span>&#160;        <span class="comment">//    from the correct terrain)</span></div>
+<div class="line"><a name="l00499"></a><span class="lineno">  499</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00500"></a><span class="lineno">  500</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> != TerrainType::StaticFittedMesh &amp;&amp;</div>
+<div class="line"><a name="l00501"></a><span class="lineno">  501</span>&#160;            <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> != TerrainType::MovingFittedMesh) {</div>
+<div class="line"><a name="l00502"></a><span class="lineno">  502</span>&#160;                terrain_fab.template setVal&lt;RunOn::Device&gt;(0.0);</div>
+<div class="line"><a name="l00503"></a><span class="lineno">  503</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00504"></a><span class="lineno">  504</span>&#160;            <span class="comment">//</span></div>
+<div class="line"><a name="l00505"></a><span class="lineno">  505</span>&#160;            <span class="comment">// Fill the values of the terrain height at k=0 only</span></div>
 <div class="line"><a name="l00506"></a><span class="lineno">  506</span>&#160;            <span class="comment">//</span></div>
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-<div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160; </div>
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-<div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;            <span class="keywordflow">for</span> (MFIter mfi(*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],TilingIfNotGPU()); mfi.isValid(); ++mfi)</div>
-<div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;            {</div>
-<div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;                Box isect = terrain_fab.box() &amp; (*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev])[mfi].box();</div>
-<div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;                (*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev])[mfi].<span class="keyword">template</span> copy&lt;RunOn::Device&gt;(terrain_fab,isect,0,isect,0,1);</div>
-<div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;            }</div>
-<div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160;            <a class="code" href="ERF__TerrainMetrics_8cpp.html#a9addf6b6f85760dd0d43acd9a52fe66c">make_terrain_fitted_coords</a>(lev,geom[lev],*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[lev],<a class="code" href="classERF.html#ae6df94c25ac21bf6a2e856a9901e3a15">phys_bc_type</a>);</div>
-<div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;        }</div>
-<div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160; </div>
-<div class="line"><a name="l00521"></a><span class="lineno">  521</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::ImmersedForcing) {</div>
-<div class="line"><a name="l00522"></a><span class="lineno">  522</span>&#160;            <a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev]-&gt;setVal(1.0);</div>
-<div class="line"><a name="l00523"></a><span class="lineno">  523</span>&#160;            MultiFab::Subtract(*<a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev], <a class="code" href="classERF.html#ad024dd413ab20e5d6f69c1f96e5b78a3">EBFactory</a>(lev).getVolFrac(), 0, 0, 1, 0);</div>
-<div class="line"><a name="l00524"></a><span class="lineno">  524</span>&#160;        }</div>
-<div class="line"><a name="l00525"></a><span class="lineno">  525</span>&#160; </div>
-<div class="line"><a name="l00526"></a><span class="lineno">  526</span>&#160;        <span class="keywordflow">if</span> (lev == 0 &amp;&amp; <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[0]) {</div>
-<div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;            Real zmax = <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[0]-&gt;max(0,0,<span class="keyword">false</span>);</div>
-<div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;            Real rel_diff = (zmax - <a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0][<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0].size()-1]) / zmax;</div>
-<div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;            <span class="keywordflow">if</span> (rel_diff &lt; 1.e-8) {</div>
-<div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;max of zphys_nd &quot;</span> &lt;&lt; zmax &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;max of zlevels  &quot;</span> &lt;&lt; <a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0][<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0].size()-1] &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;                AMREX_ALWAYS_ASSERT_WITH_MESSAGE(rel_diff &lt; 1.e-8, <span class="stringliteral">&quot;Terrain is taller than domain top!&quot;</span>);</div>
-<div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160;            }</div>
-<div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;        } <span class="comment">// lev == 0</span></div>
-<div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160; </div>
-<div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]) {</div>
-<div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160;            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;FillBoundary(geom[lev].periodicity());</div>
-<div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;        }</div>
-<div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160; </div>
-<div class="line"><a name="l00540"></a><span class="lineno">  540</span>&#160;    } <span class="comment">// init_type</span></div>
-<div class="line"><a name="l00541"></a><span class="lineno">  541</span>&#160;}</div>
+<div class="line"><a name="l00507"></a><span class="lineno">  507</span>&#160;            <a class="code" href="classERF.html#a60e8cb933f237903e3fbcd6376c26db0">prob</a>-&gt;init_terrain_surface(geom[lev],terrain_fab,time);</div>
+<div class="line"><a name="l00508"></a><span class="lineno">  508</span>&#160;        }</div>
+<div class="line"><a name="l00509"></a><span class="lineno">  509</span>&#160; </div>
+<div class="line"><a name="l00510"></a><span class="lineno">  510</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]) { <span class="comment">// Has this been allocated?</span></div>
+<div class="line"><a name="l00511"></a><span class="lineno">  511</span>&#160;            <span class="keywordflow">for</span> (MFIter mfi(*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],TilingIfNotGPU()); mfi.isValid(); ++mfi)</div>
+<div class="line"><a name="l00512"></a><span class="lineno">  512</span>&#160;            {</div>
+<div class="line"><a name="l00513"></a><span class="lineno">  513</span>&#160;                Box isect = terrain_fab.box() &amp; (*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev])[mfi].box();</div>
+<div class="line"><a name="l00514"></a><span class="lineno">  514</span>&#160;                (*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev])[mfi].<span class="keyword">template</span> copy&lt;RunOn::Device&gt;(terrain_fab,isect,0,isect,0,1);</div>
+<div class="line"><a name="l00515"></a><span class="lineno">  515</span>&#160;            }</div>
+<div class="line"><a name="l00516"></a><span class="lineno">  516</span>&#160;            <a class="code" href="ERF__TerrainMetrics_8cpp.html#a9addf6b6f85760dd0d43acd9a52fe66c">make_terrain_fitted_coords</a>(lev,geom[lev],*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[lev],<a class="code" href="classERF.html#ae6df94c25ac21bf6a2e856a9901e3a15">phys_bc_type</a>);</div>
+<div class="line"><a name="l00517"></a><span class="lineno">  517</span>&#160;        }</div>
+<div class="line"><a name="l00518"></a><span class="lineno">  518</span>&#160; </div>
+<div class="line"><a name="l00519"></a><span class="lineno">  519</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::ImmersedForcing) {</div>
+<div class="line"><a name="l00520"></a><span class="lineno">  520</span>&#160;            <a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev]-&gt;setVal(1.0);</div>
+<div class="line"><a name="l00521"></a><span class="lineno">  521</span>&#160;            MultiFab::Subtract(*<a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev], <a class="code" href="classERF.html#ad024dd413ab20e5d6f69c1f96e5b78a3">EBFactory</a>(lev).getVolFrac(), 0, 0, 1, 0);</div>
+<div class="line"><a name="l00522"></a><span class="lineno">  522</span>&#160;        }</div>
+<div class="line"><a name="l00523"></a><span class="lineno">  523</span>&#160; </div>
+<div class="line"><a name="l00524"></a><span class="lineno">  524</span>&#160;        <span class="keywordflow">if</span> (lev == 0 &amp;&amp; <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[0]) {</div>
+<div class="line"><a name="l00525"></a><span class="lineno">  525</span>&#160;            Real zmax = <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[0]-&gt;max(0,0,<span class="keyword">false</span>);</div>
+<div class="line"><a name="l00526"></a><span class="lineno">  526</span>&#160;            Real rel_diff = (zmax - <a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0][<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0].size()-1]) / zmax;</div>
+<div class="line"><a name="l00527"></a><span class="lineno">  527</span>&#160;            <span class="keywordflow">if</span> (rel_diff &lt; 1.e-8) {</div>
+<div class="line"><a name="l00528"></a><span class="lineno">  528</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;max of zphys_nd &quot;</span> &lt;&lt; zmax &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00529"></a><span class="lineno">  529</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;max of zlevels  &quot;</span> &lt;&lt; <a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0][<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[0].size()-1] &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00530"></a><span class="lineno">  530</span>&#160;                AMREX_ALWAYS_ASSERT_WITH_MESSAGE(rel_diff &lt; 1.e-8, <span class="stringliteral">&quot;Terrain is taller than domain top!&quot;</span>);</div>
+<div class="line"><a name="l00531"></a><span class="lineno">  531</span>&#160;            }</div>
+<div class="line"><a name="l00532"></a><span class="lineno">  532</span>&#160;        } <span class="comment">// lev == 0</span></div>
+<div class="line"><a name="l00533"></a><span class="lineno">  533</span>&#160; </div>
+<div class="line"><a name="l00534"></a><span class="lineno">  534</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]) {</div>
+<div class="line"><a name="l00535"></a><span class="lineno">  535</span>&#160;            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00536"></a><span class="lineno">  536</span>&#160;        }</div>
+<div class="line"><a name="l00537"></a><span class="lineno">  537</span>&#160; </div>
+<div class="line"><a name="l00538"></a><span class="lineno">  538</span>&#160;    } <span class="comment">// init_type</span></div>
+<div class="line"><a name="l00539"></a><span class="lineno">  539</span>&#160;}</div>
 <div class="ttc" id="aERF__TerrainMetrics_8cpp_html_a9addf6b6f85760dd0d43acd9a52fe66c"><div class="ttname"><a href="ERF__TerrainMetrics_8cpp.html#a9addf6b6f85760dd0d43acd9a52fe66c">make_terrain_fitted_coords</a></div><div class="ttdeci">void make_terrain_fitted_coords(int lev, const Geometry &amp;geom, MultiFab &amp;z_phys_nd, Vector&lt; Real &gt; const &amp;z_levels_h, GpuArray&lt; ERF_BC, AMREX_SPACEDIM *2 &gt; &amp;phys_bc_type)</div><div class="ttdef"><b>Definition:</b> ERF_TerrainMetrics.cpp:118</div></div>
 </div><!-- fragment --><div class="dynheader">
 Here is the call graph for this function:</div>
@@ -9255,326 +9253,343 @@ <h2 class="memtitle"><span class="permalink"><a href="#aa8b243c093bd872b6f759260
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 <div class="line"><a name="l00873"></a><span class="lineno">  873</span>&#160;        <span class="keyword">auto</span>&amp; lev_old = <a class="code" href="classERF.html#af31e928baa970a1507dfb0233b352542">vars_old</a>[lev];</div>
 <div class="line"><a name="l00874"></a><span class="lineno">  874</span>&#160; </div>
-<div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;        <span class="keywordtype">int</span> ncomp = lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
-<div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160; </div>
+<div class="line"><a name="l00875"></a><span class="lineno">  875</span>&#160;        <span class="comment">// ***************************************************************************</span></div>
+<div class="line"><a name="l00876"></a><span class="lineno">  876</span>&#160;        <span class="comment">// Physical bc&#39;s at domain boundary</span></div>
 <div class="line"><a name="l00877"></a><span class="lineno">  877</span>&#160;        <span class="comment">// ***************************************************************************</span></div>
-<div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;        <span class="comment">// Physical bc&#39;s at domain boundary</span></div>
-<div class="line"><a name="l00879"></a><span class="lineno">  879</span>&#160;        <span class="comment">// ***************************************************************************</span></div>
-<div class="line"><a name="l00880"></a><span class="lineno">  880</span>&#160;        IntVect ngvect_cons = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect();</div>
-<div class="line"><a name="l00881"></a><span class="lineno">  881</span>&#160;        IntVect ngvect_vels = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect();</div>
-<div class="line"><a name="l00882"></a><span class="lineno">  882</span>&#160; </div>
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-<div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;        (   *<a class="code" href="classERF.html#a45c8ecd777f47732993777a0afb8e140">physbcs_w</a>[lev])(lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],</div>
-<div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;                             ngvect_vels,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa03b35ec9e83f34bb1349a86965d34e34">BCVars::zvel_bc</a>,<span class="keyword">true</span>);</div>
-<div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160; </div>
-<div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],0,0,ncomp,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect());</div>
-<div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],0,0,    1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],0,0,    1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],0,0,    1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;    }</div>
-<div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160; </div>
-<div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;    <span class="comment">// Compute the minimum dz in the domain at each level (to be used for setting the timestep)</span></div>
-<div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160;    <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>.resize(max_level+1);</div>
-<div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
-<div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;    {</div>
-<div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;        <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>[lev] = geom[lev].CellSize(2);</div>
-<div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;        <span class="keywordflow">if</span> ( <a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> != MeshType::ConstantDz ) {</div>
-<div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;            <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>[lev] *= (*<a class="code" href="classERF.html#a30f8b851ed29d38695d44cff257f14e6">detJ_cc</a>[lev]).min(0);</div>
-<div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;        }</div>
-<div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;    }</div>
-<div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160; </div>
-<div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160;    <a class="code" href="classERF.html#aa38639155e79bab8a0c283aa6e7afa81">ComputeDt</a>();</div>
-<div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160; </div>
-<div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160;    <span class="comment">// Fill ghost cells/faces</span></div>
-<div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
-<div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160;    {</div>
-<div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;        <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &gt;= 0) {</div>
-<div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160;            <a class="code" href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">Construct_ERFFillPatchers</a>(lev);</div>
-<div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;        }</div>
-<div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160; </div>
-<div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;        <span class="keyword">auto</span>&amp; lev_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
-<div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160; </div>
-<div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;        <span class="comment">// Fill boundary conditions -- not sure why we need this here</span></div>
-<div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;        <span class="keywordtype">bool</span> fillset = <span class="keyword">false</span>;</div>
-<div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
-<div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160;            <a class="code" href="classERF.html#afded764725240c356faffa97dddbe03d">FillPatch</a>(lev, <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],</div>
-<div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>]});</div>
-<div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160;        } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;            <a class="code" href="classERF.html#afded764725240c356faffa97dddbe03d">FillPatch</a>(lev, <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],</div>
-<div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>]},</div>
-<div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;<a class="code" href="classERF.html#a01f3db32272f53dc68025f0a98195e57">rU_new</a>[lev],&amp;<a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>[lev],&amp;<a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>[lev]},</div>
-<div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;                      <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev], <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev],</div>
-<div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;                      fillset);</div>
+<div class="line"><a name="l00878"></a><span class="lineno">  878</span>&#160;        IntVect ngvect_cons = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect();</div>
+<div class="line"><a name="l00879"></a><span class="lineno">  879</span>&#160;        IntVect ngvect_vels = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect();</div>
+<div class="line"><a name="l00880"></a><span class="lineno">  880</span>&#160; </div>
+<div class="line"><a name="l00881"></a><span class="lineno">  881</span>&#160;        <span class="keywordtype">int</span> ncomp_cons = lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
+<div class="line"><a name="l00882"></a><span class="lineno">  882</span>&#160;        <span class="keywordtype">bool</span> do_fb     = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l00883"></a><span class="lineno">  883</span>&#160; </div>
+<div class="line"><a name="l00884"></a><span class="lineno">  884</span>&#160;<span class="preprocessor">#ifdef ERF_USE_NETCDF</span></div>
+<div class="line"><a name="l00885"></a><span class="lineno">  885</span>&#160;        <span class="comment">// We call this here because it is an ERF routine</span></div>
+<div class="line"><a name="l00886"></a><span class="lineno">  886</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a> &amp;&amp; (lev==0)) {</div>
+<div class="line"><a name="l00887"></a><span class="lineno">  887</span>&#160;            <span class="keywordtype">int</span> icomp_cons = 0;</div>
+<div class="line"><a name="l00888"></a><span class="lineno">  888</span>&#160;            <span class="keywordtype">bool</span> cons_only = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00889"></a><span class="lineno">  889</span>&#160;            Vector&lt;MultiFab*&gt; mfs_vec = {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],</div>
+<div class="line"><a name="l00890"></a><span class="lineno">  890</span>&#160;                                         &amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>]};</div>
+<div class="line"><a name="l00891"></a><span class="lineno">  891</span>&#160;            fill_from_realbdy(mfs_vec,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],cons_only,icomp_cons,</div>
+<div class="line"><a name="l00892"></a><span class="lineno">  892</span>&#160;                              ncomp_cons,ngvect_cons,ngvect_vels);</div>
+<div class="line"><a name="l00893"></a><span class="lineno">  893</span>&#160;            do_fb = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00894"></a><span class="lineno">  894</span>&#160;    }</div>
+<div class="line"><a name="l00895"></a><span class="lineno">  895</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00896"></a><span class="lineno">  896</span>&#160; </div>
+<div class="line"><a name="l00897"></a><span class="lineno">  897</span>&#160;        (*<a class="code" href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72">physbcs_cons</a>[lev])(lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],0,ncomp_cons,</div>
+<div class="line"><a name="l00898"></a><span class="lineno">  898</span>&#160;                             ngvect_cons,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>,do_fb);</div>
+<div class="line"><a name="l00899"></a><span class="lineno">  899</span>&#160;        (   *<a class="code" href="classERF.html#a64e55e5ae9df06433146db657eb9e72e">physbcs_u</a>[lev])(lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],0,1         ,</div>
+<div class="line"><a name="l00900"></a><span class="lineno">  900</span>&#160;                             ngvect_vels,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aab1782753c68aaad8632b0a7d575e57f4">BCVars::xvel_bc</a>,do_fb);</div>
+<div class="line"><a name="l00901"></a><span class="lineno">  901</span>&#160;        (   *<a class="code" href="classERF.html#a79231b5cfd4576a742e46ae0082b5121">physbcs_v</a>[lev])(lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],0,1         ,</div>
+<div class="line"><a name="l00902"></a><span class="lineno">  902</span>&#160;                             ngvect_vels,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa98ad22810fdfe9e585bc6481fc12454e">BCVars::yvel_bc</a>,do_fb);</div>
+<div class="line"><a name="l00903"></a><span class="lineno">  903</span>&#160;        (   *<a class="code" href="classERF.html#a45c8ecd777f47732993777a0afb8e140">physbcs_w</a>[lev])(lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],</div>
+<div class="line"><a name="l00904"></a><span class="lineno">  904</span>&#160;                             ngvect_vels,<a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],<a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aa03b35ec9e83f34bb1349a86965d34e34">BCVars::zvel_bc</a>,do_fb);</div>
+<div class="line"><a name="l00905"></a><span class="lineno">  905</span>&#160; </div>
+<div class="line"><a name="l00906"></a><span class="lineno">  906</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],0,0,ncomp_cons,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect());</div>
+<div class="line"><a name="l00907"></a><span class="lineno">  907</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],0,0,         1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00908"></a><span class="lineno">  908</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],0,0,         1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00909"></a><span class="lineno">  909</span>&#160;        MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],0,0,         1,lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00910"></a><span class="lineno">  910</span>&#160;    }</div>
+<div class="line"><a name="l00911"></a><span class="lineno">  911</span>&#160; </div>
+<div class="line"><a name="l00912"></a><span class="lineno">  912</span>&#160;    <span class="comment">// Compute the minimum dz in the domain at each level (to be used for setting the timestep)</span></div>
+<div class="line"><a name="l00913"></a><span class="lineno">  913</span>&#160;    <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>.resize(max_level+1);</div>
+<div class="line"><a name="l00914"></a><span class="lineno">  914</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
+<div class="line"><a name="l00915"></a><span class="lineno">  915</span>&#160;    {</div>
+<div class="line"><a name="l00916"></a><span class="lineno">  916</span>&#160;        <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>[lev] = geom[lev].CellSize(2);</div>
+<div class="line"><a name="l00917"></a><span class="lineno">  917</span>&#160;        <span class="keywordflow">if</span> ( <a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> != MeshType::ConstantDz ) {</div>
+<div class="line"><a name="l00918"></a><span class="lineno">  918</span>&#160;            <a class="code" href="classERF.html#a15db5266359edba700f523f16da303a7">dz_min</a>[lev] *= (*<a class="code" href="classERF.html#a30f8b851ed29d38695d44cff257f14e6">detJ_cc</a>[lev]).min(0);</div>
+<div class="line"><a name="l00919"></a><span class="lineno">  919</span>&#160;        }</div>
+<div class="line"><a name="l00920"></a><span class="lineno">  920</span>&#160;    }</div>
+<div class="line"><a name="l00921"></a><span class="lineno">  921</span>&#160; </div>
+<div class="line"><a name="l00922"></a><span class="lineno">  922</span>&#160;    <a class="code" href="classERF.html#aa38639155e79bab8a0c283aa6e7afa81">ComputeDt</a>();</div>
+<div class="line"><a name="l00923"></a><span class="lineno">  923</span>&#160; </div>
+<div class="line"><a name="l00924"></a><span class="lineno">  924</span>&#160;    <span class="comment">// Fill ghost cells/faces</span></div>
+<div class="line"><a name="l00925"></a><span class="lineno">  925</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
+<div class="line"><a name="l00926"></a><span class="lineno">  926</span>&#160;    {</div>
+<div class="line"><a name="l00927"></a><span class="lineno">  927</span>&#160;        <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &gt;= 0) {</div>
+<div class="line"><a name="l00928"></a><span class="lineno">  928</span>&#160;            <a class="code" href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">Construct_ERFFillPatchers</a>(lev);</div>
 <div class="line"><a name="l00929"></a><span class="lineno">  929</span>&#160;        }</div>
 <div class="line"><a name="l00930"></a><span class="lineno">  930</span>&#160; </div>
-<div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160;        <span class="comment">// We do this here to make sure level (lev-1) boundary conditions are filled</span></div>
-<div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;        <span class="comment">// before we interpolate to level (lev) ghost cells</span></div>
-<div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;        <span class="keywordflow">if</span> (lev &lt; finest_level) {</div>
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-<div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect());</div>
-<div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nGrowVect());</div>
-<div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;        }</div>
-<div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160; </div>
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-<div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;        <span class="comment">// We fill the ghost cell values of the base state in case it wasn&#39;t done in the initialization</span></div>
-<div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;        <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00931"></a><span class="lineno">  931</span>&#160;        <span class="keyword">auto</span>&amp; lev_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
+<div class="line"><a name="l00932"></a><span class="lineno">  932</span>&#160; </div>
+<div class="line"><a name="l00933"></a><span class="lineno">  933</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00934"></a><span class="lineno">  934</span>&#160;        <span class="comment">// Fill boundary conditions -- not sure why we need this here</span></div>
+<div class="line"><a name="l00935"></a><span class="lineno">  935</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00936"></a><span class="lineno">  936</span>&#160;        <span class="keywordtype">bool</span> fillset = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l00937"></a><span class="lineno">  937</span>&#160;        <span class="keywordflow">if</span> (lev == 0) {</div>
+<div class="line"><a name="l00938"></a><span class="lineno">  938</span>&#160;            <a class="code" href="classERF.html#afded764725240c356faffa97dddbe03d">FillPatch</a>(lev, <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],</div>
+<div class="line"><a name="l00939"></a><span class="lineno">  939</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>]});</div>
+<div class="line"><a name="l00940"></a><span class="lineno">  940</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00941"></a><span class="lineno">  941</span>&#160;            <a class="code" href="classERF.html#afded764725240c356faffa97dddbe03d">FillPatch</a>(lev, <a class="code" href="classERF.html#a65741b6379d273c19a25cf48bb947614">t_new</a>[lev],</div>
+<div class="line"><a name="l00942"></a><span class="lineno">  942</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>]},</div>
+<div class="line"><a name="l00943"></a><span class="lineno">  943</span>&#160;                      {&amp;lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],&amp;<a class="code" href="classERF.html#a01f3db32272f53dc68025f0a98195e57">rU_new</a>[lev],&amp;<a class="code" href="classERF.html#a54e37988486ef96e55e84bd8e91bb688">rV_new</a>[lev],&amp;<a class="code" href="classERF.html#aa46c0b0d20525aed10f447923e54dde7">rW_new</a>[lev]},</div>
+<div class="line"><a name="l00944"></a><span class="lineno">  944</span>&#160;                      <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev], <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev],</div>
+<div class="line"><a name="l00945"></a><span class="lineno">  945</span>&#160;                      fillset);</div>
+<div class="line"><a name="l00946"></a><span class="lineno">  946</span>&#160;        }</div>
 <div class="line"><a name="l00947"></a><span class="lineno">  947</span>&#160; </div>
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-<div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh) {</div>
-<div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;            MultiFab::Copy(<a class="code" href="classERF.html#a37b2a4257df8ff53d4450de47f16ace1">base_state_new</a>[lev],<a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev],0,0,<a class="code" href="namespaceBaseState.html#a6f8dc3597225ea7941dad615e7f22e91a088c1232c30770df1105d3cdf66ee582">BaseState::num_comps</a>,<a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].nGrowVect());</div>
-<div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;            <a class="code" href="classERF.html#a37b2a4257df8ff53d4450de47f16ace1">base_state_new</a>[lev].FillBoundary(geom[lev].periodicity());</div>
-<div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;        }</div>
-<div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160; </div>
-<div class="line"><a name="l00954"></a><span class="lineno">  954</span>&#160;    }</div>
-<div class="line"><a name="l00955"></a><span class="lineno">  955</span>&#160; </div>
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-<div class="line"><a name="l00957"></a><span class="lineno">  957</span>&#160;    ParmParse <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>(<span class="stringliteral">&quot;erf&quot;</span>);</div>
-<div class="line"><a name="l00958"></a><span class="lineno">  958</span>&#160;    <span class="keywordtype">int</span> is_land;</div>
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-<div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;            <span class="keywordflow">if</span> (is_land == 1) {</div>
-<div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;Level &quot;</span> &lt;&lt; lev &lt;&lt; <span class="stringliteral">&quot; is land&quot;</span> &lt;&lt; std::endl;</div>
-<div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160;            } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (is_land == 0) {</div>
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-<div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;            } <span class="keywordflow">else</span> {</div>
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-<div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160;            <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;FillBoundary(geom[lev].periodicity());</div>
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-<div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160;    }</div>
-<div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160; </div>
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-<div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;    amrex::Print() &lt;&lt;  <span class="stringliteral">&quot; About to call read_waves from ERF.cpp&quot;</span>  &lt;&lt; std::endl;</div>
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-<div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;    <span class="comment">// NOTE: we must set up the MOST routine after calling FillPatch</span></div>
-<div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;    <span class="comment">//       in order to have lateral ghost cells filled (MOST + terrain interp).</span></div>
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-<div class="line"><a name="l00988"></a><span class="lineno">  988</span>&#160;    {</div>
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-<div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;#ifdef ERF_USE_NETCDF</div>
-<div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;                                           ,start_bdy_time, bdy_time_interval</div>
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-<div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;                                           );</div>
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-<div class="line"><a name="l01014"></a><span class="lineno"> 1014</span>&#160;        <span class="comment">// Note we don&#39;t fill ghost cells here because this is just for diagnostics</span></div>
-<div class="line"><a name="l01015"></a><span class="lineno"> 1015</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
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-<div class="line"><a name="l01028"></a><span class="lineno"> 1028</span>&#160; </div>
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-<div class="line"><a name="l01078"></a><span class="lineno"> 1078</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l01079"></a><span class="lineno"> 1079</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32e0d0f5ae0db18ee81f9d4325a14f64">check_type</a> == <span class="stringliteral">&quot;native&quot;</span>) {</div>
-<div class="line"><a name="l01080"></a><span class="lineno"> 1080</span>&#160;           <a class="code" href="classERF.html#ad101fd46096db2d6b21544bfede6551f">WriteCheckpointFile</a>();</div>
+<div class="line"><a name="l00948"></a><span class="lineno">  948</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00949"></a><span class="lineno">  949</span>&#160;        <span class="comment">// We do this here to make sure level (lev-1) boundary conditions are filled</span></div>
+<div class="line"><a name="l00950"></a><span class="lineno">  950</span>&#160;        <span class="comment">// before we interpolate to level (lev) ghost cells</span></div>
+<div class="line"><a name="l00951"></a><span class="lineno">  951</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00952"></a><span class="lineno">  952</span>&#160;        <span class="keywordflow">if</span> (lev &lt; finest_level) {</div>
+<div class="line"><a name="l00953"></a><span class="lineno">  953</span>&#160;            <span class="keyword">auto</span>&amp; lev_old = <a class="code" href="classERF.html#af31e928baa970a1507dfb0233b352542">vars_old</a>[lev];</div>
+<div class="line"><a name="l00954"></a><span class="lineno">  954</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nGrowVect());</div>
+<div class="line"><a name="l00955"></a><span class="lineno">  955</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a2a10a6e726515894b07621908abd4c0c">Vars::xvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00956"></a><span class="lineno">  956</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a81793b83204cfa56d4683bc676fbbfb6">Vars::yvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00957"></a><span class="lineno">  957</span>&#160;            MultiFab::Copy(lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>],0,0,lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nComp(),lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a48ee63b17bc216e9661511c33c68bd8b">Vars::zvel</a>].nGrowVect());</div>
+<div class="line"><a name="l00958"></a><span class="lineno">  958</span>&#160;        }</div>
+<div class="line"><a name="l00959"></a><span class="lineno">  959</span>&#160; </div>
+<div class="line"><a name="l00960"></a><span class="lineno">  960</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00961"></a><span class="lineno">  961</span>&#160;        <span class="comment">// We fill the ghost cell values of the base state in case it wasn&#39;t done in the initialization</span></div>
+<div class="line"><a name="l00962"></a><span class="lineno">  962</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00963"></a><span class="lineno">  963</span>&#160;        <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00964"></a><span class="lineno">  964</span>&#160; </div>
+<div class="line"><a name="l00965"></a><span class="lineno">  965</span>&#160;        <span class="comment">// For moving terrain only</span></div>
+<div class="line"><a name="l00966"></a><span class="lineno">  966</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh) {</div>
+<div class="line"><a name="l00967"></a><span class="lineno">  967</span>&#160;            MultiFab::Copy(<a class="code" href="classERF.html#a37b2a4257df8ff53d4450de47f16ace1">base_state_new</a>[lev],<a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev],0,0,<a class="code" href="namespaceBaseState.html#a6f8dc3597225ea7941dad615e7f22e91a088c1232c30770df1105d3cdf66ee582">BaseState::num_comps</a>,<a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].nGrowVect());</div>
+<div class="line"><a name="l00968"></a><span class="lineno">  968</span>&#160;            <a class="code" href="classERF.html#a37b2a4257df8ff53d4450de47f16ace1">base_state_new</a>[lev].FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00969"></a><span class="lineno">  969</span>&#160;        }</div>
+<div class="line"><a name="l00970"></a><span class="lineno">  970</span>&#160; </div>
+<div class="line"><a name="l00971"></a><span class="lineno">  971</span>&#160;    }</div>
+<div class="line"><a name="l00972"></a><span class="lineno">  972</span>&#160; </div>
+<div class="line"><a name="l00973"></a><span class="lineno">  973</span>&#160;    <span class="comment">// Allow idealized cases over water, used to set lmask</span></div>
+<div class="line"><a name="l00974"></a><span class="lineno">  974</span>&#160;    ParmParse <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>(<span class="stringliteral">&quot;erf&quot;</span>);</div>
+<div class="line"><a name="l00975"></a><span class="lineno">  975</span>&#160;    <span class="keywordtype">int</span> is_land;</div>
+<div class="line"><a name="l00976"></a><span class="lineno">  976</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
+<div class="line"><a name="l00977"></a><span class="lineno">  977</span>&#160;    {</div>
+<div class="line"><a name="l00978"></a><span class="lineno">  978</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;is_land&quot;</span>, is_land, lev)) {</div>
+<div class="line"><a name="l00979"></a><span class="lineno">  979</span>&#160;            <span class="keywordflow">if</span> (is_land == 1) {</div>
+<div class="line"><a name="l00980"></a><span class="lineno">  980</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;Level &quot;</span> &lt;&lt; lev &lt;&lt; <span class="stringliteral">&quot; is land&quot;</span> &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00981"></a><span class="lineno">  981</span>&#160;            } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (is_land == 0) {</div>
+<div class="line"><a name="l00982"></a><span class="lineno">  982</span>&#160;                amrex::Print() &lt;&lt; <span class="stringliteral">&quot;Level &quot;</span> &lt;&lt; lev &lt;&lt; <span class="stringliteral">&quot; is water&quot;</span> &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00983"></a><span class="lineno">  983</span>&#160;            } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l00984"></a><span class="lineno">  984</span>&#160;                Error(<span class="stringliteral">&quot;is_land should be 0 or 1&quot;</span>);</div>
+<div class="line"><a name="l00985"></a><span class="lineno">  985</span>&#160;            }</div>
+<div class="line"><a name="l00986"></a><span class="lineno">  986</span>&#160;            <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;setVal(is_land);</div>
+<div class="line"><a name="l00987"></a><span class="lineno">  987</span>&#160;            <a class="code" href="classERF.html#a3f3e29874221e43e13e2a431e77e0e4e">lmask_lev</a>[lev][0]-&gt;FillBoundary(geom[lev].periodicity());</div>
+<div class="line"><a name="l00988"></a><span class="lineno">  988</span>&#160;        }</div>
+<div class="line"><a name="l00989"></a><span class="lineno">  989</span>&#160;    }</div>
+<div class="line"><a name="l00990"></a><span class="lineno">  990</span>&#160; </div>
+<div class="line"><a name="l00991"></a><span class="lineno">  991</span>&#160;<span class="preprocessor">#ifdef ERF_USE_WW3_COUPLING</span></div>
+<div class="line"><a name="l00992"></a><span class="lineno">  992</span>&#160;    <span class="keywordtype">int</span> lev = 0;</div>
+<div class="line"><a name="l00993"></a><span class="lineno">  993</span>&#160;    amrex::Print() &lt;&lt;  <span class="stringliteral">&quot; About to call send_to_ww3 from ERF.cpp&quot;</span> &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00994"></a><span class="lineno">  994</span>&#160;    send_to_ww3(lev);</div>
+<div class="line"><a name="l00995"></a><span class="lineno">  995</span>&#160;    amrex::Print() &lt;&lt;  <span class="stringliteral">&quot; About to call read_waves from ERF.cpp&quot;</span>  &lt;&lt; std::endl;</div>
+<div class="line"><a name="l00996"></a><span class="lineno">  996</span>&#160;    read_waves(lev);</div>
+<div class="line"><a name="l00997"></a><span class="lineno">  997</span>&#160;   <span class="comment">// send_to_ww3(lev);</span></div>
+<div class="line"><a name="l00998"></a><span class="lineno">  998</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l00999"></a><span class="lineno">  999</span>&#160; </div>
+<div class="line"><a name="l01000"></a><span class="lineno"> 1000</span>&#160;    <span class="comment">// Configure ABLMost params if used MostWall boundary condition</span></div>
+<div class="line"><a name="l01001"></a><span class="lineno"> 1001</span>&#160;    <span class="comment">// NOTE: we must set up the MOST routine after calling FillPatch</span></div>
+<div class="line"><a name="l01002"></a><span class="lineno"> 1002</span>&#160;    <span class="comment">//       in order to have lateral ghost cells filled (MOST + terrain interp).</span></div>
+<div class="line"><a name="l01003"></a><span class="lineno"> 1003</span>&#160;    <span class="comment">//       FillPatch does not call MOST, FillIntermediatePatch does.</span></div>
+<div class="line"><a name="l01004"></a><span class="lineno"> 1004</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#ae6df94c25ac21bf6a2e856a9901e3a15">phys_bc_type</a>[Orientation(Direction::z,Orientation::low)] == <a class="code" href="ERF__IndexDefines_8H.html#adf340bf1893bad34b2bf452d987d86c9a882dd232c0425bb9366544f84f0a7b6c">ERF_BC::MOST</a>)</div>
+<div class="line"><a name="l01005"></a><span class="lineno"> 1005</span>&#160;    {</div>
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+<div class="line"><a name="l01008"></a><span class="lineno"> 1008</span>&#160;        <span class="keywordflow">if</span> (use_exp_most) {</div>
+<div class="line"><a name="l01009"></a><span class="lineno"> 1009</span>&#160;            Print() &lt;&lt; <span class="stringliteral">&quot;Using MOST with explicitly included surface stresses&quot;</span> &lt;&lt; std::endl;</div>
+<div class="line"><a name="l01010"></a><span class="lineno"> 1010</span>&#160;            <span class="keywordflow">if</span> (use_rot_most) {</div>
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+<div class="line"><a name="l01013"></a><span class="lineno"> 1013</span>&#160;        }</div>
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+<div class="line"><a name="l01019"></a><span class="lineno"> 1019</span>&#160;#ifdef ERF_USE_NETCDF</div>
+<div class="line"><a name="l01020"></a><span class="lineno"> 1020</span>&#160;                                           ,start_bdy_time, bdy_time_interval</div>
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+<div class="line"><a name="l01026"></a><span class="lineno"> 1026</span>&#160;            <span class="comment">// Update surface fields if needed</span></div>
+<div class="line"><a name="l01027"></a><span class="lineno"> 1027</span>&#160;            <a class="code" href="classERF.html#a53fbe0d6ca7ba034c618eb7052ed9771">ReadCheckpointFileMOST</a>();</div>
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+<div class="line"><a name="l01029"></a><span class="lineno"> 1029</span>&#160; </div>
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+<div class="line"><a name="l01031"></a><span class="lineno"> 1031</span>&#160;        <span class="comment">// Note we don&#39;t fill ghost cells here because this is just for diagnostics</span></div>
+<div class="line"><a name="l01032"></a><span class="lineno"> 1032</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
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+<div class="line"><a name="l01038"></a><span class="lineno"> 1038</span>&#160;            MultiFab::Divide(*<a class="code" href="classERF.html#a71629ae2fda396472198691b75d83b2e">Theta_prim</a>[lev], <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>],      <a class="code" href="ERF__IndexDefines_8H.html#a27dcc910aeb002a0fd44727954dc0e49">Rho_comp</a>, 0, 1, ng);</div>
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@@ -9587,7 +9602,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aa8b243c093bd872b6f759260
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-<div class="ttc" id="aclassERF_html_a530d2ce59e6fd46e9fb00e4d11eaf737"><div class="ttname"><a href="classERF.html#a530d2ce59e6fd46e9fb00e4d11eaf737">ERF::restart</a></div><div class="ttdeci">void restart()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1234</div></div>
+<div class="ttc" id="aclassERF_html_a530d2ce59e6fd46e9fb00e4d11eaf737"><div class="ttname"><a href="classERF.html#a530d2ce59e6fd46e9fb00e4d11eaf737">ERF::restart</a></div><div class="ttdeci">void restart()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1251</div></div>
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-<div class="ttc" id="aclassERF_html_adc284f421c5fd9dd15c0e5cbe4ff5fc8"><div class="ttname"><a href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">ERF::Construct_ERFFillPatchers</a></div><div class="ttdeci">void Construct_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1876</div></div>
+<div class="ttc" id="aclassERF_html_adc284f421c5fd9dd15c0e5cbe4ff5fc8"><div class="ttname"><a href="classERF.html#adc284f421c5fd9dd15c0e5cbe4ff5fc8">ERF::Construct_ERFFillPatchers</a></div><div class="ttdeci">void Construct_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1893</div></div>
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+<div class="line"><a name="l01226"></a><span class="lineno"> 1226</span>&#160;<span class="comment">           to ERF::particleData */</span></div>
+<div class="line"><a name="l01227"></a><span class="lineno"> 1227</span>&#160;        <span class="keyword">const</span> <span class="keyword">auto</span>&amp; pc_name( <span class="keyword">dynamic_cast&lt;</span>LagrangianMicrophysics&amp;<span class="keyword">&gt;</span>(*micro).getName() );</div>
+<div class="line"><a name="l01228"></a><span class="lineno"> 1228</span>&#160;        <span class="comment">/* The particle container has not yet been constructed and initialized, so just add</span></div>
+<div class="line"><a name="l01229"></a><span class="lineno"> 1229</span>&#160;<span class="comment">           its name here for now (so that functions to set plotting variables can see it). */</span></div>
+<div class="line"><a name="l01230"></a><span class="lineno"> 1230</span>&#160;        particleData.addName( pc_name );</div>
+<div class="line"><a name="l01231"></a><span class="lineno"> 1231</span>&#160; </div>
+<div class="line"><a name="l01232"></a><span class="lineno"> 1232</span>&#160;<span class="preprocessor">#else</span></div>
+<div class="line"><a name="l01233"></a><span class="lineno"> 1233</span>&#160;        Abort(<span class="stringliteral">&quot;Lagrangian microphysics can be used when compiled with ERF_USE_PARTICLES&quot;</span>);</div>
+<div class="line"><a name="l01234"></a><span class="lineno"> 1234</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01235"></a><span class="lineno"> 1235</span>&#160;    }</div>
+<div class="line"><a name="l01236"></a><span class="lineno"> 1236</span>&#160; </div>
+<div class="line"><a name="l01237"></a><span class="lineno"> 1237</span>&#160;    <a class="code" href="classERF.html#ae00126a9c2738bf6a6cbbe77321c9cfc">qmoist</a>.resize(a_nlevsmax);</div>
+<div class="line"><a name="l01238"></a><span class="lineno"> 1238</span>&#160;    <span class="keywordflow">return</span>;</div>
+<div class="line"><a name="l01239"></a><span class="lineno"> 1239</span>&#160;}</div>
 <div class="ttc" id="aclassERF_html_ae00126a9c2738bf6a6cbbe77321c9cfc"><div class="ttname"><a href="classERF.html#ae00126a9c2738bf6a6cbbe77321c9cfc">ERF::qmoist</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::MultiFab * &gt; &gt; qmoist</div><div class="ttdef"><b>Definition:</b> ERF.H:769</div></div>
 </div><!-- fragment --><div class="dynheader">
 Here is the call graph for this function:</div>
@@ -10489,27 +10504,27 @@ <h2 class="memtitle"><span class="permalink"><a href="#ac81ec7f74a1be1c4a1e6e15e
   </tr>
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-<div class="fragment"><div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160;{</div>
-<div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> == MeshType::VariableDz) {</div>
-<div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160;        AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev] != <span class="keyword">nullptr</span>);</div>
-<div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;    }</div>
-<div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160; </div>
-<div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;    <a class="code" href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72">physbcs_cons</a>[lev] = std::make_unique&lt;ERFPhysBCFunct_cons&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
-<div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;                                                               <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
-<div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;                                                               <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>);</div>
-<div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;    <a class="code" href="classERF.html#a64e55e5ae9df06433146db657eb9e72e">physbcs_u</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_u&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
-<div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
-<div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;                                                            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#a902f60d94be5eaf86361d1d5ad942105">xvel_bc_data</a>[lev].data());</div>
-<div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160;    <a class="code" href="classERF.html#a79231b5cfd4576a742e46ae0082b5121">physbcs_v</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_v&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
-<div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
-<div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;                                                            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#ae5e40fcd6dd76c80d0b5b09be5baef97">yvel_bc_data</a>[lev].data());</div>
-<div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160;    <a class="code" href="classERF.html#a45c8ecd777f47732993777a0afb8e140">physbcs_w</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_w&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
-<div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
-<div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;                                                            <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a>, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],</div>
-<div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;                                                            <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#ae08c25dcf643c6ef39f27d7dd0cb7423">zvel_bc_data</a>[lev].data());</div>
-<div class="line"><a name="l00631"></a><span class="lineno">  631</span>&#160;    <a class="code" href="classERF.html#af4e7dc93dae16aa2cc94bbb20b699a6f">physbcs_base</a>[lev] = std::make_unique&lt;ERFPhysBCFunct_base&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
-<div class="line"><a name="l00632"></a><span class="lineno">  632</span>&#160;                                                               (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh));</div>
-<div class="line"><a name="l00633"></a><span class="lineno">  633</span>&#160;}</div>
+<div class="fragment"><div class="line"><a name="l00611"></a><span class="lineno">  611</span>&#160;{</div>
+<div class="line"><a name="l00612"></a><span class="lineno">  612</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> == MeshType::VariableDz) {</div>
+<div class="line"><a name="l00613"></a><span class="lineno">  613</span>&#160;        AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev] != <span class="keyword">nullptr</span>);</div>
+<div class="line"><a name="l00614"></a><span class="lineno">  614</span>&#160;    }</div>
+<div class="line"><a name="l00615"></a><span class="lineno">  615</span>&#160; </div>
+<div class="line"><a name="l00616"></a><span class="lineno">  616</span>&#160;    <a class="code" href="classERF.html#a2e9b04043853d25f2d76edbc0bed2e72">physbcs_cons</a>[lev] = std::make_unique&lt;ERFPhysBCFunct_cons&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
+<div class="line"><a name="l00617"></a><span class="lineno">  617</span>&#160;                                                               <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
+<div class="line"><a name="l00618"></a><span class="lineno">  618</span>&#160;                                                               <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>);</div>
+<div class="line"><a name="l00619"></a><span class="lineno">  619</span>&#160;    <a class="code" href="classERF.html#a64e55e5ae9df06433146db657eb9e72e">physbcs_u</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_u&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
+<div class="line"><a name="l00620"></a><span class="lineno">  620</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
+<div class="line"><a name="l00621"></a><span class="lineno">  621</span>&#160;                                                            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#a902f60d94be5eaf86361d1d5ad942105">xvel_bc_data</a>[lev].data());</div>
+<div class="line"><a name="l00622"></a><span class="lineno">  622</span>&#160;    <a class="code" href="classERF.html#a79231b5cfd4576a742e46ae0082b5121">physbcs_v</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_v&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
+<div class="line"><a name="l00623"></a><span class="lineno">  623</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
+<div class="line"><a name="l00624"></a><span class="lineno">  624</span>&#160;                                                            <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev], <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#ae5e40fcd6dd76c80d0b5b09be5baef97">yvel_bc_data</a>[lev].data());</div>
+<div class="line"><a name="l00625"></a><span class="lineno">  625</span>&#160;    <a class="code" href="classERF.html#a45c8ecd777f47732993777a0afb8e140">physbcs_w</a>[lev]    = std::make_unique&lt;ERFPhysBCFunct_w&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
+<div class="line"><a name="l00626"></a><span class="lineno">  626</span>&#160;                                                            <a class="code" href="classERF.html#a27261ba76aa71f1ddbf87bca0ede579f">m_bc_extdir_vals</a>, <a class="code" href="classERF.html#af783df8719de2e72e347de5860f71528">m_bc_neumann_vals</a>,</div>
+<div class="line"><a name="l00627"></a><span class="lineno">  627</span>&#160;                                                            <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a>, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],</div>
+<div class="line"><a name="l00628"></a><span class="lineno">  628</span>&#160;                                                            <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>, <a class="code" href="classERF.html#ae08c25dcf643c6ef39f27d7dd0cb7423">zvel_bc_data</a>[lev].data());</div>
+<div class="line"><a name="l00629"></a><span class="lineno">  629</span>&#160;    <a class="code" href="classERF.html#af4e7dc93dae16aa2cc94bbb20b699a6f">physbcs_base</a>[lev] = std::make_unique&lt;ERFPhysBCFunct_base&gt; (lev, geom[lev], <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="classERF.html#a8a99e22b1111c803e31b4afd5fcdea60">domain_bcs_type_d</a>,</div>
+<div class="line"><a name="l00630"></a><span class="lineno">  630</span>&#160;                                                               (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh));</div>
+<div class="line"><a name="l00631"></a><span class="lineno">  631</span>&#160;}</div>
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@@ -10544,49 +10559,49 @@ <h2 class="memtitle"><span class="permalink"><a href="#a93ed2dd2c2441da6853d6f48
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-<div class="fragment"><div class="line"><a name="l01831"></a><span class="lineno"> 1831</span>&#160;{</div>
-<div class="line"><a name="l01832"></a><span class="lineno"> 1832</span>&#160;    <span class="comment">// Get the number of cells in z at level 0</span></div>
-<div class="line"><a name="l01833"></a><span class="lineno"> 1833</span>&#160;    <span class="keywordtype">int</span> dir_z = AMREX_SPACEDIM-1;</div>
-<div class="line"><a name="l01834"></a><span class="lineno"> 1834</span>&#160;    <span class="keyword">auto</span> domain = geom[0].Domain();</div>
-<div class="line"><a name="l01835"></a><span class="lineno"> 1835</span>&#160;    <span class="keywordtype">int</span> size_z = domain.length(dir_z);</div>
-<div class="line"><a name="l01836"></a><span class="lineno"> 1836</span>&#160;    <span class="keywordtype">int</span> start_z = domain.smallEnd()[dir_z];</div>
-<div class="line"><a name="l01837"></a><span class="lineno"> 1837</span>&#160;    Real area_z = <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(domain.length(0)*domain.length(1));</div>
-<div class="line"><a name="l01838"></a><span class="lineno"> 1838</span>&#160; </div>
-<div class="line"><a name="l01839"></a><span class="lineno"> 1839</span>&#160;    <span class="comment">// resize the level 0 horizontal average vectors</span></div>
-<div class="line"><a name="l01840"></a><span class="lineno"> 1840</span>&#160;    h_havg.resize(size_z, 0.0_rt);</div>
-<div class="line"><a name="l01841"></a><span class="lineno"> 1841</span>&#160; </div>
-<div class="line"><a name="l01842"></a><span class="lineno"> 1842</span>&#160;    <span class="comment">// Get the cell centered data and construct sums</span></div>
-<div class="line"><a name="l01843"></a><span class="lineno"> 1843</span>&#160;<span class="preprocessor">#ifdef _OPENMP</span></div>
-<div class="line"><a name="l01844"></a><span class="lineno"> 1844</span>&#160;<span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
-<div class="line"><a name="l01845"></a><span class="lineno"> 1845</span>&#160;<span class="preprocessor">#endif</span></div>
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-<div class="line"><a name="l01847"></a><span class="lineno"> 1847</span>&#160;        <span class="keyword">const</span> Box&amp; box = mfi.validbox();</div>
-<div class="line"><a name="l01848"></a><span class="lineno"> 1848</span>&#160;        <span class="keyword">const</span> IntVect&amp; se = box.smallEnd();</div>
-<div class="line"><a name="l01849"></a><span class="lineno"> 1849</span>&#160;        <span class="keyword">const</span> IntVect&amp; be = box.bigEnd();</div>
-<div class="line"><a name="l01850"></a><span class="lineno"> 1850</span>&#160; </div>
-<div class="line"><a name="l01851"></a><span class="lineno"> 1851</span>&#160;        <span class="keyword">auto</span>      fab_arr = S[mfi].array();</div>
-<div class="line"><a name="l01852"></a><span class="lineno"> 1852</span>&#160; </div>
-<div class="line"><a name="l01853"></a><span class="lineno"> 1853</span>&#160;        FArrayBox fab_reduce(box, 1, The_Async_Arena());</div>
-<div class="line"><a name="l01854"></a><span class="lineno"> 1854</span>&#160;        <span class="keyword">auto</span> arr_reduce   = fab_reduce.array();</div>
+<div class="fragment"><div class="line"><a name="l01848"></a><span class="lineno"> 1848</span>&#160;{</div>
+<div class="line"><a name="l01849"></a><span class="lineno"> 1849</span>&#160;    <span class="comment">// Get the number of cells in z at level 0</span></div>
+<div class="line"><a name="l01850"></a><span class="lineno"> 1850</span>&#160;    <span class="keywordtype">int</span> dir_z = AMREX_SPACEDIM-1;</div>
+<div class="line"><a name="l01851"></a><span class="lineno"> 1851</span>&#160;    <span class="keyword">auto</span> domain = geom[0].Domain();</div>
+<div class="line"><a name="l01852"></a><span class="lineno"> 1852</span>&#160;    <span class="keywordtype">int</span> size_z = domain.length(dir_z);</div>
+<div class="line"><a name="l01853"></a><span class="lineno"> 1853</span>&#160;    <span class="keywordtype">int</span> start_z = domain.smallEnd()[dir_z];</div>
+<div class="line"><a name="l01854"></a><span class="lineno"> 1854</span>&#160;    Real area_z = <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(domain.length(0)*domain.length(1));</div>
 <div class="line"><a name="l01855"></a><span class="lineno"> 1855</span>&#160; </div>
-<div class="line"><a name="l01856"></a><span class="lineno"> 1856</span>&#160;        ParallelFor(box, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) {</div>
-<div class="line"><a name="l01857"></a><span class="lineno"> 1857</span>&#160;            arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);</div>
-<div class="line"><a name="l01858"></a><span class="lineno"> 1858</span>&#160;        });</div>
-<div class="line"><a name="l01859"></a><span class="lineno"> 1859</span>&#160; </div>
-<div class="line"><a name="l01860"></a><span class="lineno"> 1860</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k=se[dir_z]; k &lt;= be[dir_z]; ++k) {</div>
-<div class="line"><a name="l01861"></a><span class="lineno"> 1861</span>&#160;            Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);</div>
-<div class="line"><a name="l01862"></a><span class="lineno"> 1862</span>&#160;            h_havg[k-start_z] += fab_reduce.sum&lt;RunOn::Device&gt;(kbox,0);</div>
-<div class="line"><a name="l01863"></a><span class="lineno"> 1863</span>&#160;        }</div>
-<div class="line"><a name="l01864"></a><span class="lineno"> 1864</span>&#160;    }</div>
-<div class="line"><a name="l01865"></a><span class="lineno"> 1865</span>&#160; </div>
-<div class="line"><a name="l01866"></a><span class="lineno"> 1866</span>&#160;    <span class="comment">// combine sums from different MPI ranks</span></div>
-<div class="line"><a name="l01867"></a><span class="lineno"> 1867</span>&#160;    ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());</div>
-<div class="line"><a name="l01868"></a><span class="lineno"> 1868</span>&#160; </div>
-<div class="line"><a name="l01869"></a><span class="lineno"> 1869</span>&#160;    <span class="comment">// divide by the total number of cells we are averaging over</span></div>
-<div class="line"><a name="l01870"></a><span class="lineno"> 1870</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; size_z; ++k) {</div>
-<div class="line"><a name="l01871"></a><span class="lineno"> 1871</span>&#160;        h_havg[k]     /= area_z;</div>
-<div class="line"><a name="l01872"></a><span class="lineno"> 1872</span>&#160;    }</div>
-<div class="line"><a name="l01873"></a><span class="lineno"> 1873</span>&#160;}</div>
+<div class="line"><a name="l01856"></a><span class="lineno"> 1856</span>&#160;    <span class="comment">// resize the level 0 horizontal average vectors</span></div>
+<div class="line"><a name="l01857"></a><span class="lineno"> 1857</span>&#160;    h_havg.resize(size_z, 0.0_rt);</div>
+<div class="line"><a name="l01858"></a><span class="lineno"> 1858</span>&#160; </div>
+<div class="line"><a name="l01859"></a><span class="lineno"> 1859</span>&#160;    <span class="comment">// Get the cell centered data and construct sums</span></div>
+<div class="line"><a name="l01860"></a><span class="lineno"> 1860</span>&#160;<span class="preprocessor">#ifdef _OPENMP</span></div>
+<div class="line"><a name="l01861"></a><span class="lineno"> 1861</span>&#160;<span class="preprocessor">#pragma omp parallel if (Gpu::notInLaunchRegion())</span></div>
+<div class="line"><a name="l01862"></a><span class="lineno"> 1862</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01863"></a><span class="lineno"> 1863</span>&#160;    <span class="keywordflow">for</span> (MFIter mfi(S); mfi.isValid(); ++mfi) {</div>
+<div class="line"><a name="l01864"></a><span class="lineno"> 1864</span>&#160;        <span class="keyword">const</span> Box&amp; box = mfi.validbox();</div>
+<div class="line"><a name="l01865"></a><span class="lineno"> 1865</span>&#160;        <span class="keyword">const</span> IntVect&amp; se = box.smallEnd();</div>
+<div class="line"><a name="l01866"></a><span class="lineno"> 1866</span>&#160;        <span class="keyword">const</span> IntVect&amp; be = box.bigEnd();</div>
+<div class="line"><a name="l01867"></a><span class="lineno"> 1867</span>&#160; </div>
+<div class="line"><a name="l01868"></a><span class="lineno"> 1868</span>&#160;        <span class="keyword">auto</span>      fab_arr = S[mfi].array();</div>
+<div class="line"><a name="l01869"></a><span class="lineno"> 1869</span>&#160; </div>
+<div class="line"><a name="l01870"></a><span class="lineno"> 1870</span>&#160;        FArrayBox fab_reduce(box, 1, The_Async_Arena());</div>
+<div class="line"><a name="l01871"></a><span class="lineno"> 1871</span>&#160;        <span class="keyword">auto</span> arr_reduce   = fab_reduce.array();</div>
+<div class="line"><a name="l01872"></a><span class="lineno"> 1872</span>&#160; </div>
+<div class="line"><a name="l01873"></a><span class="lineno"> 1873</span>&#160;        ParallelFor(box, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) {</div>
+<div class="line"><a name="l01874"></a><span class="lineno"> 1874</span>&#160;            arr_reduce(i, j, k, 0) = fab_arr(i,j,k,n);</div>
+<div class="line"><a name="l01875"></a><span class="lineno"> 1875</span>&#160;        });</div>
+<div class="line"><a name="l01876"></a><span class="lineno"> 1876</span>&#160; </div>
+<div class="line"><a name="l01877"></a><span class="lineno"> 1877</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k=se[dir_z]; k &lt;= be[dir_z]; ++k) {</div>
+<div class="line"><a name="l01878"></a><span class="lineno"> 1878</span>&#160;            Box kbox(box); kbox.setSmall(dir_z,k); kbox.setBig(dir_z,k);</div>
+<div class="line"><a name="l01879"></a><span class="lineno"> 1879</span>&#160;            h_havg[k-start_z] += fab_reduce.sum&lt;RunOn::Device&gt;(kbox,0);</div>
+<div class="line"><a name="l01880"></a><span class="lineno"> 1880</span>&#160;        }</div>
+<div class="line"><a name="l01881"></a><span class="lineno"> 1881</span>&#160;    }</div>
+<div class="line"><a name="l01882"></a><span class="lineno"> 1882</span>&#160; </div>
+<div class="line"><a name="l01883"></a><span class="lineno"> 1883</span>&#160;    <span class="comment">// combine sums from different MPI ranks</span></div>
+<div class="line"><a name="l01884"></a><span class="lineno"> 1884</span>&#160;    ParallelDescriptor::ReduceRealSum(h_havg.dataPtr(), h_havg.size());</div>
+<div class="line"><a name="l01885"></a><span class="lineno"> 1885</span>&#160; </div>
+<div class="line"><a name="l01886"></a><span class="lineno"> 1886</span>&#160;    <span class="comment">// divide by the total number of cells we are averaging over</span></div>
+<div class="line"><a name="l01887"></a><span class="lineno"> 1887</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; size_z; ++k) {</div>
+<div class="line"><a name="l01888"></a><span class="lineno"> 1888</span>&#160;        h_havg[k]     /= area_z;</div>
+<div class="line"><a name="l01889"></a><span class="lineno"> 1889</span>&#160;    }</div>
+<div class="line"><a name="l01890"></a><span class="lineno"> 1890</span>&#160;}</div>
 </div><!-- fragment -->
 </div>
 </div>
@@ -10684,106 +10699,106 @@ <h2 class="memtitle"><span class="permalink"><a href="#a01987b2556834788694f2f37
         </tr>
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 </div><div class="memdoc">
-<div class="fragment"><div class="line"><a name="l01725"></a><span class="lineno"> 1725</span>&#160;{</div>
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-<div class="line"><a name="l01729"></a><span class="lineno"> 1729</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af976afa61859c07e6249963edc367c2d">coupling_type</a> == CouplingType::TwoWay) {</div>
-<div class="line"><a name="l01730"></a><span class="lineno"> 1730</span>&#160;        <a class="code" href="classERF.html#a8202de1f8f372e3e6fdc483447c6a55f">AverageDown</a>();</div>
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-<div class="line"><a name="l01732"></a><span class="lineno"> 1732</span>&#160; </div>
-<div class="line"><a name="l01733"></a><span class="lineno"> 1733</span>&#160;    MultiFab mf(grids[lev], dmap[lev], 5, 0);</div>
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-<div class="line"><a name="l01737"></a><span class="lineno"> 1737</span>&#160; </div>
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-<div class="line"><a name="l01756"></a><span class="lineno"> 1756</span>&#160;            }</div>
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-<div class="line"><a name="l01784"></a><span class="lineno"> 1784</span>&#160;    }</div>
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+<div class="line"><a name="l01749"></a><span class="lineno"> 1749</span>&#160; </div>
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+<div class="line"><a name="l01752"></a><span class="lineno"> 1752</span>&#160;    <span class="keywordtype">int</span> zdir = 2;</div>
+<div class="line"><a name="l01753"></a><span class="lineno"> 1753</span>&#160;    <span class="keyword">auto</span> domain = geom[0].Domain();</div>
+<div class="line"><a name="l01754"></a><span class="lineno"> 1754</span>&#160; </div>
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+<div class="line"><a name="l01756"></a><span class="lineno"> 1756</span>&#160;    <span class="keywordtype">bool</span> is_anelastic = (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aa7be0d60ce3de3441d44082cc1b725ec">anelastic</a>[lev] == 1);</div>
+<div class="line"><a name="l01757"></a><span class="lineno"> 1757</span>&#160; </div>
+<div class="line"><a name="l01758"></a><span class="lineno"> 1758</span>&#160;    <span class="keywordflow">for</span> (MFIter mfi(mf); mfi.isValid(); ++mfi) {</div>
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+<div class="line"><a name="l01761"></a><span class="lineno"> 1761</span>&#160;        <span class="keyword">auto</span> <span class="keyword">const</span>  hse_arr = <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].const_array(mfi);</div>
+<div class="line"><a name="l01762"></a><span class="lineno"> 1762</span>&#160;        <span class="keyword">auto</span> <span class="keyword">const</span> cons_arr = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].const_array(mfi);</div>
+<div class="line"><a name="l01763"></a><span class="lineno"> 1763</span>&#160;        ParallelFor(bx, [=] AMREX_GPU_DEVICE (<span class="keywordtype">int</span> i, <span class="keywordtype">int</span> j, <span class="keywordtype">int</span> k) {</div>
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+<div class="line"><a name="l01765"></a><span class="lineno"> 1765</span>&#160;            fab_arr(i, j, k, 0) = dens;</div>
+<div class="line"><a name="l01766"></a><span class="lineno"> 1766</span>&#160;            fab_arr(i, j, k, 1) = cons_arr(i, j, k, <a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>) / dens;</div>
+<div class="line"><a name="l01767"></a><span class="lineno"> 1767</span>&#160;            <span class="keywordflow">if</span> (!use_moisture) {</div>
+<div class="line"><a name="l01768"></a><span class="lineno"> 1768</span>&#160;                <span class="keywordflow">if</span> (is_anelastic) {</div>
+<div class="line"><a name="l01769"></a><span class="lineno"> 1769</span>&#160;                    fab_arr(i,j,k,2) = hse_arr(i,j,k,<a class="code" href="namespaceBaseState.html#a6f8dc3597225ea7941dad615e7f22e91aa8253dc5484f2621e0bf8d51d98d635e">BaseState::p0_comp</a>);</div>
+<div class="line"><a name="l01770"></a><span class="lineno"> 1770</span>&#160;                } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l01771"></a><span class="lineno"> 1771</span>&#160;                    fab_arr(i,j,k,2) = <a class="code" href="ERF__EOS_8H.html#a08354ab110fb9e873bce9250b4f4b46e">getPgivenRTh</a>(cons_arr(i,j,k,<a class="code" href="ERF__IndexDefines_8H.html#a28f96fd04e1ff08fa7a8f53ccde0f877">RhoTheta_comp</a>));</div>
+<div class="line"><a name="l01772"></a><span class="lineno"> 1772</span>&#160;                }</div>
+<div class="line"><a name="l01773"></a><span class="lineno"> 1773</span>&#160;            }</div>
+<div class="line"><a name="l01774"></a><span class="lineno"> 1774</span>&#160;        });</div>
+<div class="line"><a name="l01775"></a><span class="lineno"> 1775</span>&#160;    }</div>
+<div class="line"><a name="l01776"></a><span class="lineno"> 1776</span>&#160; </div>
+<div class="line"><a name="l01777"></a><span class="lineno"> 1777</span>&#160;    <span class="keywordflow">if</span> (use_moisture)</div>
+<div class="line"><a name="l01778"></a><span class="lineno"> 1778</span>&#160;    {</div>
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+<div class="line"><a name="l01780"></a><span class="lineno"> 1780</span>&#160;            <span class="keyword">const</span> Box&amp; bx = mfi.validbox();</div>
+<div class="line"><a name="l01781"></a><span class="lineno"> 1781</span>&#160;            <span class="keyword">auto</span>  fab_arr = mf.array(mfi);</div>
+<div class="line"><a name="l01782"></a><span class="lineno"> 1782</span>&#160;            <span class="keyword">auto</span> <span class="keyword">const</span>  hse_arr = <a class="code" href="classERF.html#a4c1fae5e620fcd64cc9ede73715e3b7c">base_state</a>[lev].const_array(mfi);</div>
+<div class="line"><a name="l01783"></a><span class="lineno"> 1783</span>&#160;            <span class="keyword">auto</span> <span class="keyword">const</span> cons_arr = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].const_array(mfi);</div>
+<div class="line"><a name="l01784"></a><span class="lineno"> 1784</span>&#160;            <span class="keywordtype">int</span> ncomp = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev][<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].nComp();</div>
 <div class="line"><a name="l01785"></a><span class="lineno"> 1785</span>&#160; </div>
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-<div class="line"><a name="l01790"></a><span class="lineno"> 1790</span>&#160; </div>
-<div class="line"><a name="l01791"></a><span class="lineno"> 1791</span>&#160;    <span class="comment">// Divide by the total number of cells we are averaging over</span></div>
-<div class="line"><a name="l01792"></a><span class="lineno"> 1792</span>&#160;    <span class="keywordtype">int</span> size_z = domain.length(zdir);</div>
-<div class="line"><a name="l01793"></a><span class="lineno"> 1793</span>&#160;    Real area_z = <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(domain.length(0)*domain.length(1));</div>
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-<div class="line"><a name="l01795"></a><span class="lineno"> 1795</span>&#160; </div>
-<div class="line"><a name="l01796"></a><span class="lineno"> 1796</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> k = 0; k &lt; klen; ++k) {</div>
-<div class="line"><a name="l01797"></a><span class="lineno"> 1797</span>&#160;        <a class="code" href="classERF.html#a4dd7c603e65d230105a4f1e0afb4cf8a">h_havg_density</a>[k]     /= area_z;</div>
-<div class="line"><a name="l01798"></a><span class="lineno"> 1798</span>&#160;        <a class="code" href="classERF.html#a9683c7b07c287e57856ee5a9c99917a1">h_havg_temperature</a>[k] /= area_z;</div>
-<div class="line"><a name="l01799"></a><span class="lineno"> 1799</span>&#160;        <a class="code" href="classERF.html#a413293737b0021c97b50c62756561446">h_havg_pressure</a>[k]    /= area_z;</div>
-<div class="line"><a name="l01800"></a><span class="lineno"> 1800</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aacbfbe6f4a3040db3efdc6dbf8fa291b">moisture_type</a> != MoistureType::None)</div>
-<div class="line"><a name="l01801"></a><span class="lineno"> 1801</span>&#160;        {</div>
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-<div class="line"><a name="l01803"></a><span class="lineno"> 1803</span>&#160;            <a class="code" href="classERF.html#ae8de26569516b41e5dc3cbb3419e891c">h_havg_qv</a>[k]          /= area_z;</div>
-<div class="line"><a name="l01804"></a><span class="lineno"> 1804</span>&#160;        }</div>
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-<div class="line"><a name="l01810"></a><span class="lineno"> 1810</span>&#160;    <a class="code" href="classERF.html#a9a4f076c56f31fbb5e68c09706605a05">d_havg_pressure</a>.resize(size_z, 0.0_rt);</div>
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-<div class="line"><a name="l01816"></a><span class="lineno"> 1816</span>&#160; </div>
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-<div class="line"><a name="l01820"></a><span class="lineno"> 1820</span>&#160;        <a class="code" href="classERF.html#a8199cc1ec38b9dfd47262ccc7df6a941">d_havg_qc</a>.resize(size_z, 0.0_rt);</div>
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+<div class="line"><a name="l01797"></a><span class="lineno"> 1797</span>&#160;        }</div>
+<div class="line"><a name="l01798"></a><span class="lineno"> 1798</span>&#160; </div>
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+<div class="line"><a name="l01802"></a><span class="lineno"> 1802</span>&#160; </div>
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+<div class="line"><a name="l01804"></a><span class="lineno"> 1804</span>&#160;    Gpu::HostVector&lt;Real&gt; h_avg_density     = sumToLine(mf,0,1,domain,zdir);</div>
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+<div class="line"><a name="l01816"></a><span class="lineno"> 1816</span>&#160;        <a class="code" href="classERF.html#a413293737b0021c97b50c62756561446">h_havg_pressure</a>[k]    /= area_z;</div>
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@@ -10959,12 +10974,12 @@ <h2 class="memtitle"><span class="permalink"><a href="#abb6175c28b36d23f5dda2994
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-<div class="ttc" id="aclassERF_html_a8f50cd1ba85fbf9ae0579a56ba06eb1b"><div class="ttname"><a href="classERF.html#a8f50cd1ba85fbf9ae0579a56ba06eb1b">ERF::init_zphys</a></div><div class="ttdeci">void init_zphys(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:473</div></div>
+<div class="ttc" id="aclassERF_html_a419510fced05e9afc05c466beeeb66f7"><div class="ttname"><a href="classERF.html#a419510fced05e9afc05c466beeeb66f7">ERF::update_diffusive_arrays</a></div><div class="ttdeci">void update_diffusive_arrays(int lev, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:380</div></div>
+<div class="ttc" id="aclassERF_html_a5600f8ce250d4811012719fdf5e85f00"><div class="ttname"><a href="classERF.html#a5600f8ce250d4811012719fdf5e85f00">ERF::initialize_integrator</a></div><div class="ttdeci">void initialize_integrator(int lev, amrex::MultiFab &amp;cons_mf, amrex::MultiFab &amp;vel_mf)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:588</div></div>
+<div class="ttc" id="aclassERF_html_a7dba7f9e6bd3f6898fac9ac2efcec692"><div class="ttname"><a href="classERF.html#a7dba7f9e6bd3f6898fac9ac2efcec692">ERF::update_terrain_arrays</a></div><div class="ttdeci">void update_terrain_arrays(int lev)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:577</div></div>
+<div class="ttc" id="aclassERF_html_a8f50cd1ba85fbf9ae0579a56ba06eb1b"><div class="ttname"><a href="classERF.html#a8f50cd1ba85fbf9ae0579a56ba06eb1b">ERF::init_zphys</a></div><div class="ttdeci">void init_zphys(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:471</div></div>
 <div class="ttc" id="aclassERF_html_aaf237fbe118d80f149295c0579608579"><div class="ttname"><a href="classERF.html#aaf237fbe118d80f149295c0579608579">ERF::init_stuff</a></div><div class="ttdeci">void init_stuff(int lev, const amrex::BoxArray &amp;ba, const amrex::DistributionMapping &amp;dm, amrex::Vector&lt; amrex::MultiFab &gt; &amp;lev_new, amrex::Vector&lt; amrex::MultiFab &gt; &amp;lev_old, amrex::MultiFab &amp;tmp_base_state, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;tmp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:23</div></div>
-<div class="ttc" id="aclassERF_html_ac0951404aa6802aad7a3be6b7375dfa2"><div class="ttname"><a href="classERF.html#ac0951404aa6802aad7a3be6b7375dfa2">ERF::Define_ERFFillPatchers</a></div><div class="ttdeci">void Define_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1902</div></div>
+<div class="ttc" id="aclassERF_html_ac0951404aa6802aad7a3be6b7375dfa2"><div class="ttname"><a href="classERF.html#ac0951404aa6802aad7a3be6b7375dfa2">ERF::Define_ERFFillPatchers</a></div><div class="ttdeci">void Define_ERFFillPatchers(int lev)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1919</div></div>
 <div class="ttc" id="astructSolverChoice_html_aed9118172b234c3a0069a78776d09baa"><div class="ttname"><a href="structSolverChoice.html#aed9118172b234c3a0069a78776d09baa">SolverChoice::do_forest_drag</a></div><div class="ttdeci">bool do_forest_drag</div><div class="ttdef"><b>Definition:</b> ERF_DataStruct.H:710</div></div>
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@@ -11195,7 +11210,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aaf10bbf8c9a5dbc257a88c4c
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 <div class="ttc" id="aclassERF_html_a4601db3087123d6a13e492f742b30d57"><div class="ttname"><a href="classERF.html#a4601db3087123d6a13e492f742b30d57">ERF::nghost_eb_basic</a></div><div class="ttdeci">static int nghost_eb_basic()</div><div class="ttdef"><b>Definition:</b> ERF.H:1404</div></div>
-<div class="ttc" id="aclassERF_html_a80981e20939a6a38ba17478da2253ff1"><div class="ttname"><a href="classERF.html#a80981e20939a6a38ba17478da2253ff1">ERF::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1265</div></div>
+<div class="ttc" id="aclassERF_html_a80981e20939a6a38ba17478da2253ff1"><div class="ttname"><a href="classERF.html#a80981e20939a6a38ba17478da2253ff1">ERF::init_only</a></div><div class="ttdeci">void init_only(int lev, amrex::Real time)</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1282</div></div>
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@@ -11510,67 +11525,67 @@ <h2 class="memtitle"><span class="permalink"><a href="#ad71a033b3fd107465a8621ea
   </tr>
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-<div class="line"><a name="l01673"></a><span class="lineno"> 1673</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 1; lev &lt;= max_level; lev++) {</div>
-<div class="line"><a name="l01674"></a><span class="lineno"> 1674</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][0] != 0 ||</div>
-<div class="line"><a name="l01675"></a><span class="lineno"> 1675</span>&#160;                <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][1] != 0 ||</div>
-<div class="line"><a name="l01676"></a><span class="lineno"> 1676</span>&#160;                <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][2] != 0 ) {</div>
-<div class="line"><a name="l01677"></a><span class="lineno"> 1677</span>&#160;                Abort(<span class="stringliteral">&quot;You must set cf_width to be a multiple of ref_ratio&quot;</span>);</div>
-<div class="line"><a name="l01678"></a><span class="lineno"> 1678</span>&#160;            }</div>
-<div class="line"><a name="l01679"></a><span class="lineno"> 1679</span>&#160;        }</div>
-<div class="line"><a name="l01680"></a><span class="lineno"> 1680</span>&#160;    }</div>
+<div class="fragment"><div class="line"><a name="l01676"></a><span class="lineno"> 1676</span>&#160;{</div>
+<div class="line"><a name="l01677"></a><span class="lineno"> 1677</span>&#160;    AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#a89f605d1a1eae06a7c79f9b6b65c637f">cfl</a> &gt; 0. || <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[0] &gt; 0.);</div>
+<div class="line"><a name="l01678"></a><span class="lineno"> 1678</span>&#160; </div>
+<div class="line"><a name="l01679"></a><span class="lineno"> 1679</span>&#160;    <span class="comment">// We don&#39;t allow use_real_bcs to be true if init_type is not either InitType::Real or InitType::Metgrid</span></div>
+<div class="line"><a name="l01680"></a><span class="lineno"> 1680</span>&#160;    AMREX_ALWAYS_ASSERT(!<a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a> || ((<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Real) || (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Metgrid)) );</div>
 <div class="line"><a name="l01681"></a><span class="lineno"> 1681</span>&#160; </div>
-<div class="line"><a name="l01682"></a><span class="lineno"> 1682</span>&#160;    <span class="comment">// If fixed_mri_dt_ratio is set, it must be even</span></div>
-<div class="line"><a name="l01683"></a><span class="lineno"> 1683</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &gt; 0 &amp;&amp; (<a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a>%2 != 0) )</div>
-<div class="line"><a name="l01684"></a><span class="lineno"> 1684</span>&#160;    {</div>
-<div class="line"><a name="l01685"></a><span class="lineno"> 1685</span>&#160;        Abort(<span class="stringliteral">&quot;If you specify fixed_mri_dt_ratio, it must be even&quot;</span>);</div>
-<div class="line"><a name="l01686"></a><span class="lineno"> 1686</span>&#160;    }</div>
-<div class="line"><a name="l01687"></a><span class="lineno"> 1687</span>&#160; </div>
-<div class="line"><a name="l01688"></a><span class="lineno"> 1688</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= max_level; lev++)</div>
-<div class="line"><a name="l01689"></a><span class="lineno"> 1689</span>&#160;    {</div>
-<div class="line"><a name="l01690"></a><span class="lineno"> 1690</span>&#160;        <span class="comment">// We ignore fixed_fast_dt if not substepping</span></div>
-<div class="line"><a name="l01691"></a><span class="lineno"> 1691</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a7c414e2fb7c53479a2d21bb3a2d4099e">substepping_type</a>[lev] == SubsteppingType::None) {</div>
-<div class="line"><a name="l01692"></a><span class="lineno"> 1692</span>&#160;            <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] = -1.0;</div>
-<div class="line"><a name="l01693"></a><span class="lineno"> 1693</span>&#160;        }</div>
-<div class="line"><a name="l01694"></a><span class="lineno"> 1694</span>&#160; </div>
-<div class="line"><a name="l01695"></a><span class="lineno"> 1695</span>&#160;        <span class="comment">// If both fixed_dt and fast_dt are specified, their ratio must be an even integer</span></div>
-<div class="line"><a name="l01696"></a><span class="lineno"> 1696</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &lt;= 0)</div>
-<div class="line"><a name="l01697"></a><span class="lineno"> 1697</span>&#160;        {</div>
-<div class="line"><a name="l01698"></a><span class="lineno"> 1698</span>&#160;            Real eps = 1.e-12;</div>
-<div class="line"><a name="l01699"></a><span class="lineno"> 1699</span>&#160;            <span class="keywordtype">int</span> ratio = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>( ( (1.0+eps) * <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] ) / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] );</div>
-<div class="line"><a name="l01700"></a><span class="lineno"> 1700</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] != ratio)</div>
-<div class="line"><a name="l01701"></a><span class="lineno"> 1701</span>&#160;            {</div>
-<div class="line"><a name="l01702"></a><span class="lineno"> 1702</span>&#160;                Abort(<span class="stringliteral">&quot;Ratio of fixed_dt to fixed_fast_dt must be an even integer&quot;</span>);</div>
-<div class="line"><a name="l01703"></a><span class="lineno"> 1703</span>&#160;            }</div>
-<div class="line"><a name="l01704"></a><span class="lineno"> 1704</span>&#160;        }</div>
-<div class="line"><a name="l01705"></a><span class="lineno"> 1705</span>&#160; </div>
-<div class="line"><a name="l01706"></a><span class="lineno"> 1706</span>&#160;        <span class="comment">// If all three are specified, they must be consistent</span></div>
-<div class="line"><a name="l01707"></a><span class="lineno"> 1707</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] &gt; 0. &amp;&amp;  <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &gt; 0)</div>
-<div class="line"><a name="l01708"></a><span class="lineno"> 1708</span>&#160;        {</div>
-<div class="line"><a name="l01709"></a><span class="lineno"> 1709</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] != <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a>)</div>
-<div class="line"><a name="l01710"></a><span class="lineno"> 1710</span>&#160;            {</div>
-<div class="line"><a name="l01711"></a><span class="lineno"> 1711</span>&#160;                Abort(<span class="stringliteral">&quot;Dt is over-specfied&quot;</span>);</div>
-<div class="line"><a name="l01712"></a><span class="lineno"> 1712</span>&#160;            }</div>
-<div class="line"><a name="l01713"></a><span class="lineno"> 1713</span>&#160;        }</div>
-<div class="line"><a name="l01714"></a><span class="lineno"> 1714</span>&#160;    } <span class="comment">// lev</span></div>
-<div class="line"><a name="l01715"></a><span class="lineno"> 1715</span>&#160; </div>
-<div class="line"><a name="l01716"></a><span class="lineno"> 1716</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af976afa61859c07e6249963edc367c2d">coupling_type</a> == CouplingType::TwoWay &amp;&amp; <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &gt; 0) {</div>
-<div class="line"><a name="l01717"></a><span class="lineno"> 1717</span>&#160;        Abort(<span class="stringliteral">&quot;For two-way coupling you must set cf_width = 0&quot;</span>);</div>
-<div class="line"><a name="l01718"></a><span class="lineno"> 1718</span>&#160;    }</div>
-<div class="line"><a name="l01719"></a><span class="lineno"> 1719</span>&#160;}</div>
+<div class="line"><a name="l01682"></a><span class="lineno"> 1682</span>&#160;    AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#abb15119348ad5399947bc8883084b230">real_width</a> &gt;= 0);</div>
+<div class="line"><a name="l01683"></a><span class="lineno"> 1683</span>&#160;    AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#acab120bb9324e7298534d765c447d703">real_set_width</a> &gt;= 0);</div>
+<div class="line"><a name="l01684"></a><span class="lineno"> 1684</span>&#160;    AMREX_ALWAYS_ASSERT(<a class="code" href="classERF.html#abb15119348ad5399947bc8883084b230">real_width</a> &gt;= <a class="code" href="classERF.html#acab120bb9324e7298534d765c447d703">real_set_width</a>);</div>
+<div class="line"><a name="l01685"></a><span class="lineno"> 1685</span>&#160; </div>
+<div class="line"><a name="l01686"></a><span class="lineno"> 1686</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &lt; 0 || <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a> &lt; 0 || <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &lt; <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>) {</div>
+<div class="line"><a name="l01687"></a><span class="lineno"> 1687</span>&#160;        Abort(<span class="stringliteral">&quot;You must set cf_width &gt;= cf_set_width &gt;= 0&quot;</span>);</div>
+<div class="line"><a name="l01688"></a><span class="lineno"> 1688</span>&#160;    }</div>
+<div class="line"><a name="l01689"></a><span class="lineno"> 1689</span>&#160;    <span class="keywordflow">if</span> (max_level &gt; 0 &amp;&amp; <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a> &gt; 0) {</div>
+<div class="line"><a name="l01690"></a><span class="lineno"> 1690</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 1; lev &lt;= max_level; lev++) {</div>
+<div class="line"><a name="l01691"></a><span class="lineno"> 1691</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][0] != 0 ||</div>
+<div class="line"><a name="l01692"></a><span class="lineno"> 1692</span>&#160;                <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][1] != 0 ||</div>
+<div class="line"><a name="l01693"></a><span class="lineno"> 1693</span>&#160;                <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>%ref_ratio[lev-1][2] != 0 ) {</div>
+<div class="line"><a name="l01694"></a><span class="lineno"> 1694</span>&#160;                Abort(<span class="stringliteral">&quot;You must set cf_width to be a multiple of ref_ratio&quot;</span>);</div>
+<div class="line"><a name="l01695"></a><span class="lineno"> 1695</span>&#160;            }</div>
+<div class="line"><a name="l01696"></a><span class="lineno"> 1696</span>&#160;        }</div>
+<div class="line"><a name="l01697"></a><span class="lineno"> 1697</span>&#160;    }</div>
+<div class="line"><a name="l01698"></a><span class="lineno"> 1698</span>&#160; </div>
+<div class="line"><a name="l01699"></a><span class="lineno"> 1699</span>&#160;    <span class="comment">// If fixed_mri_dt_ratio is set, it must be even</span></div>
+<div class="line"><a name="l01700"></a><span class="lineno"> 1700</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &gt; 0 &amp;&amp; (<a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a>%2 != 0) )</div>
+<div class="line"><a name="l01701"></a><span class="lineno"> 1701</span>&#160;    {</div>
+<div class="line"><a name="l01702"></a><span class="lineno"> 1702</span>&#160;        Abort(<span class="stringliteral">&quot;If you specify fixed_mri_dt_ratio, it must be even&quot;</span>);</div>
+<div class="line"><a name="l01703"></a><span class="lineno"> 1703</span>&#160;    }</div>
+<div class="line"><a name="l01704"></a><span class="lineno"> 1704</span>&#160; </div>
+<div class="line"><a name="l01705"></a><span class="lineno"> 1705</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= max_level; lev++)</div>
+<div class="line"><a name="l01706"></a><span class="lineno"> 1706</span>&#160;    {</div>
+<div class="line"><a name="l01707"></a><span class="lineno"> 1707</span>&#160;        <span class="comment">// We ignore fixed_fast_dt if not substepping</span></div>
+<div class="line"><a name="l01708"></a><span class="lineno"> 1708</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a7c414e2fb7c53479a2d21bb3a2d4099e">substepping_type</a>[lev] == SubsteppingType::None) {</div>
+<div class="line"><a name="l01709"></a><span class="lineno"> 1709</span>&#160;            <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] = -1.0;</div>
+<div class="line"><a name="l01710"></a><span class="lineno"> 1710</span>&#160;        }</div>
+<div class="line"><a name="l01711"></a><span class="lineno"> 1711</span>&#160; </div>
+<div class="line"><a name="l01712"></a><span class="lineno"> 1712</span>&#160;        <span class="comment">// If both fixed_dt and fast_dt are specified, their ratio must be an even integer</span></div>
+<div class="line"><a name="l01713"></a><span class="lineno"> 1713</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &lt;= 0)</div>
+<div class="line"><a name="l01714"></a><span class="lineno"> 1714</span>&#160;        {</div>
+<div class="line"><a name="l01715"></a><span class="lineno"> 1715</span>&#160;            Real eps = 1.e-12;</div>
+<div class="line"><a name="l01716"></a><span class="lineno"> 1716</span>&#160;            <span class="keywordtype">int</span> ratio = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>( ( (1.0+eps) * <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] ) / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] );</div>
+<div class="line"><a name="l01717"></a><span class="lineno"> 1717</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] != ratio)</div>
+<div class="line"><a name="l01718"></a><span class="lineno"> 1718</span>&#160;            {</div>
+<div class="line"><a name="l01719"></a><span class="lineno"> 1719</span>&#160;                Abort(<span class="stringliteral">&quot;Ratio of fixed_dt to fixed_fast_dt must be an even integer&quot;</span>);</div>
+<div class="line"><a name="l01720"></a><span class="lineno"> 1720</span>&#160;            }</div>
+<div class="line"><a name="l01721"></a><span class="lineno"> 1721</span>&#160;        }</div>
+<div class="line"><a name="l01722"></a><span class="lineno"> 1722</span>&#160; </div>
+<div class="line"><a name="l01723"></a><span class="lineno"> 1723</span>&#160;        <span class="comment">// If all three are specified, they must be consistent</span></div>
+<div class="line"><a name="l01724"></a><span class="lineno"> 1724</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] &gt; 0. &amp;&amp; <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] &gt; 0. &amp;&amp;  <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a> &gt; 0)</div>
+<div class="line"><a name="l01725"></a><span class="lineno"> 1725</span>&#160;        {</div>
+<div class="line"><a name="l01726"></a><span class="lineno"> 1726</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev] / <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] != <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a>)</div>
+<div class="line"><a name="l01727"></a><span class="lineno"> 1727</span>&#160;            {</div>
+<div class="line"><a name="l01728"></a><span class="lineno"> 1728</span>&#160;                Abort(<span class="stringliteral">&quot;Dt is over-specfied&quot;</span>);</div>
+<div class="line"><a name="l01729"></a><span class="lineno"> 1729</span>&#160;            }</div>
+<div class="line"><a name="l01730"></a><span class="lineno"> 1730</span>&#160;        }</div>
+<div class="line"><a name="l01731"></a><span class="lineno"> 1731</span>&#160;    } <span class="comment">// lev</span></div>
+<div class="line"><a name="l01732"></a><span class="lineno"> 1732</span>&#160; </div>
+<div class="line"><a name="l01733"></a><span class="lineno"> 1733</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af976afa61859c07e6249963edc367c2d">coupling_type</a> == CouplingType::TwoWay &amp;&amp; <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a> &gt; 0) {</div>
+<div class="line"><a name="l01734"></a><span class="lineno"> 1734</span>&#160;        Abort(<span class="stringliteral">&quot;For two-way coupling you must set cf_width = 0&quot;</span>);</div>
+<div class="line"><a name="l01735"></a><span class="lineno"> 1735</span>&#160;    }</div>
+<div class="line"><a name="l01736"></a><span class="lineno"> 1736</span>&#160;}</div>
 <div class="ttc" id="aclassERF_html_abb15119348ad5399947bc8883084b230"><div class="ttname"><a href="classERF.html#abb15119348ad5399947bc8883084b230">ERF::real_width</a></div><div class="ttdeci">int real_width</div><div class="ttdef"><b>Definition:</b> ERF.H:1070</div></div>
 <div class="ttc" id="aclassERF_html_acab120bb9324e7298534d765c447d703"><div class="ttname"><a href="classERF.html#acab120bb9324e7298534d765c447d703">ERF::real_set_width</a></div><div class="ttdeci">int real_set_width</div><div class="ttdef"><b>Definition:</b> ERF.H:1071</div></div>
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-<div class="line"><a name="l01439"></a><span class="lineno"> 1439</span>&#160;            <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] = <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev-1] / <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(MaxRefRatio(lev-1));</div>
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-<div class="line"><a name="l01443"></a><span class="lineno"> 1443</span>&#160; </div>
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-<div class="line"><a name="l01445"></a><span class="lineno"> 1445</span>&#160;        <a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> = InitType::None;</div>
-<div class="line"><a name="l01446"></a><span class="lineno"> 1446</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;init_type&quot;</span>,<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a>);</div>
-<div class="line"><a name="l01447"></a><span class="lineno"> 1447</span>&#160; </div>
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-<div class="line"><a name="l01449"></a><span class="lineno"> 1449</span>&#160;        <span class="comment">// We default to yes if we have them, but the user can override that option</span></div>
-<div class="line"><a name="l01450"></a><span class="lineno"> 1450</span>&#160;        <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a> = ( (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Real) || (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Metgrid) );</div>
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+<div class="line"><a name="l01422"></a><span class="lineno"> 1422</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;restart&quot;</span>, <a class="code" href="classERF.html#a8e758060d3dede9694fbfcabddc17169">restart_chkfile</a>);</div>
+<div class="line"><a name="l01423"></a><span class="lineno"> 1423</span>&#160;        pp_amr.query(<span class="stringliteral">&quot;restart&quot;</span>, <a class="code" href="classERF.html#a8e758060d3dede9694fbfcabddc17169">restart_chkfile</a>);</div>
+<div class="line"><a name="l01424"></a><span class="lineno"> 1424</span>&#160; </div>
+<div class="line"><a name="l01425"></a><span class="lineno"> 1425</span>&#160;        <span class="comment">// Verbosity</span></div>
+<div class="line"><a name="l01426"></a><span class="lineno"> 1426</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;v&quot;</span>, <a class="code" href="classERF.html#a43d0b17f6e155691a1e9474526df3af5">verbose</a>);</div>
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+<div class="line"><a name="l01429"></a><span class="lineno"> 1429</span>&#160;<span class="preprocessor">#ifndef ERF_USE_FFT</span></div>
+<div class="line"><a name="l01430"></a><span class="lineno"> 1430</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a35e6065478296fac62affbf8f53b8c23">use_fft</a>) {</div>
+<div class="line"><a name="l01431"></a><span class="lineno"> 1431</span>&#160;            amrex::Abort(<span class="stringliteral">&quot;You must build with USE_FFT in order to set use_fft = true in your inputs file&quot;</span>);</div>
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+<div class="line"><a name="l01433"></a><span class="lineno"> 1433</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01434"></a><span class="lineno"> 1434</span>&#160; </div>
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+<div class="line"><a name="l01436"></a><span class="lineno"> 1436</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;sum_interval&quot;</span>, <a class="code" href="classERF.html#a5232e98479611a24fe97994640c61faa">sum_interval</a>);</div>
+<div class="line"><a name="l01437"></a><span class="lineno"> 1437</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;sum_period&quot;</span>  , <a class="code" href="classERF.html#a1cf2ba396f4404724824516da4c4a084">sum_per</a>);</div>
+<div class="line"><a name="l01438"></a><span class="lineno"> 1438</span>&#160; </div>
+<div class="line"><a name="l01439"></a><span class="lineno"> 1439</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;pert_interval&quot;</span>, <a class="code" href="classERF.html#a52761522e295887435c10853d8c7dc37">pert_interval</a>);</div>
+<div class="line"><a name="l01440"></a><span class="lineno"> 1440</span>&#160; </div>
+<div class="line"><a name="l01441"></a><span class="lineno"> 1441</span>&#160;        <span class="comment">// Time step controls</span></div>
+<div class="line"><a name="l01442"></a><span class="lineno"> 1442</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;cfl&quot;</span>, <a class="code" href="classERF.html#a89f605d1a1eae06a7c79f9b6b65c637f">cfl</a>);</div>
+<div class="line"><a name="l01443"></a><span class="lineno"> 1443</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;substepping_cfl&quot;</span>, <a class="code" href="classERF.html#addc2ee5eba2264ae2b2475970b0b8c2d">sub_cfl</a>);</div>
+<div class="line"><a name="l01444"></a><span class="lineno"> 1444</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;init_shrink&quot;</span>, <a class="code" href="classERF.html#ad353aa9e275612ff2110c5a1405c1176">init_shrink</a>);</div>
+<div class="line"><a name="l01445"></a><span class="lineno"> 1445</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;change_max&quot;</span>, <a class="code" href="classERF.html#ae16d413b172bb3b3400af6d5cb236fd4">change_max</a>);</div>
+<div class="line"><a name="l01446"></a><span class="lineno"> 1446</span>&#160; </div>
+<div class="line"><a name="l01447"></a><span class="lineno"> 1447</span>&#160;        <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>.resize(max_level+1,-1.);</div>
+<div class="line"><a name="l01448"></a><span class="lineno"> 1448</span>&#160;        <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>.resize(max_level+1,-1.);</div>
+<div class="line"><a name="l01449"></a><span class="lineno"> 1449</span>&#160; </div>
+<div class="line"><a name="l01450"></a><span class="lineno"> 1450</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;fixed_dt&quot;</span>, <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[0]);</div>
+<div class="line"><a name="l01451"></a><span class="lineno"> 1451</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;fixed_fast_dt&quot;</span>, <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[0]);</div>
 <div class="line"><a name="l01452"></a><span class="lineno"> 1452</span>&#160; </div>
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-<div class="line"><a name="l01454"></a><span class="lineno"> 1454</span>&#160;        <a class="code" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75">num_files_at_level</a>.resize(max_level+1,0);</div>
-<div class="line"><a name="l01455"></a><span class="lineno"> 1455</span>&#160; </div>
-<div class="line"><a name="l01456"></a><span class="lineno"> 1456</span>&#160;        <span class="comment">// We use this to keep track of how many boxes are specified thru the refinement indicators</span></div>
-<div class="line"><a name="l01457"></a><span class="lineno"> 1457</span>&#160;        <a class="code" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">num_boxes_at_level</a>.resize(max_level+1,0);</div>
-<div class="line"><a name="l01458"></a><span class="lineno"> 1458</span>&#160;            <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>.resize(max_level+1);</div>
-<div class="line"><a name="l01459"></a><span class="lineno"> 1459</span>&#160; </div>
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-<div class="line"><a name="l01461"></a><span class="lineno"> 1461</span>&#160;        <a class="code" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">num_boxes_at_level</a>[0] = 1;</div>
-<div class="line"><a name="l01462"></a><span class="lineno"> 1462</span>&#160;        <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>[0].resize(1);</div>
-<div class="line"><a name="l01463"></a><span class="lineno"> 1463</span>&#160;        <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>[0][0] = geom[0].Domain();</div>
+<div class="line"><a name="l01453"></a><span class="lineno"> 1453</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 1; lev &lt;= max_level; lev++)</div>
+<div class="line"><a name="l01454"></a><span class="lineno"> 1454</span>&#160;        {</div>
+<div class="line"><a name="l01455"></a><span class="lineno"> 1455</span>&#160;            <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev]      = <a class="code" href="classERF.html#a393b540493795b8c6ee0f64634b8b815">fixed_dt</a>[lev-1]     / <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(MaxRefRatio(lev-1));</div>
+<div class="line"><a name="l01456"></a><span class="lineno"> 1456</span>&#160;            <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev] = <a class="code" href="classERF.html#a4f3f43c6304a0a3ae78c42d54c05ee26">fixed_fast_dt</a>[lev-1] / <span class="keyword">static_cast&lt;</span>Real<span class="keyword">&gt;</span>(MaxRefRatio(lev-1));</div>
+<div class="line"><a name="l01457"></a><span class="lineno"> 1457</span>&#160;        }</div>
+<div class="line"><a name="l01458"></a><span class="lineno"> 1458</span>&#160; </div>
+<div class="line"><a name="l01459"></a><span class="lineno"> 1459</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;fixed_mri_dt_ratio&quot;</span>, <a class="code" href="classERF.html#ad2e1a979c0ad68e87eaee349beb7e9fd">fixed_mri_dt_ratio</a>);</div>
+<div class="line"><a name="l01460"></a><span class="lineno"> 1460</span>&#160; </div>
+<div class="line"><a name="l01461"></a><span class="lineno"> 1461</span>&#160;        <span class="comment">// How to initialize</span></div>
+<div class="line"><a name="l01462"></a><span class="lineno"> 1462</span>&#160;        <a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> = InitType::None;</div>
+<div class="line"><a name="l01463"></a><span class="lineno"> 1463</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;init_type&quot;</span>,<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a>);</div>
 <div class="line"><a name="l01464"></a><span class="lineno"> 1464</span>&#160; </div>
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-<div class="line"><a name="l01467"></a><span class="lineno"> 1467</span>&#160; </div>
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-<div class="line"><a name="l01469"></a><span class="lineno"> 1469</span>&#160;        <span class="comment">//        but we always have exactly one file at level 0</span></div>
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-<div class="line"><a name="l01474"></a><span class="lineno"> 1474</span>&#160;            {</div>
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-<div class="line"><a name="l01476"></a><span class="lineno"> 1476</span>&#160;                <a class="code" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75">num_files_at_level</a>[lev] = num_files;</div>
-<div class="line"><a name="l01477"></a><span class="lineno"> 1477</span>&#160;                <a class="code" href="classERF.html#a7ef14f6028b577eba70aef46b508be19">nc_init_file</a>[lev].resize(num_files);</div>
-<div class="line"><a name="l01478"></a><span class="lineno"> 1478</span>&#160;                <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.queryarr(nc_file_names.c_str(), <a class="code" href="classERF.html#a7ef14f6028b577eba70aef46b508be19">nc_init_file</a>[lev],0,num_files);</div>
-<div class="line"><a name="l01479"></a><span class="lineno"> 1479</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; num_files; j++)</div>
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-<div class="line"><a name="l01487"></a><span class="lineno"> 1487</span>&#160; </div>
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-<div class="line"><a name="l01489"></a><span class="lineno"> 1489</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;init_sounding_ideal&quot;</span>, <a class="code" href="classERF.html#a2eb81c590271b429f132103c9af25830">init_sounding_ideal</a>);</div>
-<div class="line"><a name="l01490"></a><span class="lineno"> 1490</span>&#160; </div>
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-<div class="line"><a name="l01493"></a><span class="lineno"> 1493</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_isothermal&quot;</span>, <a class="code" href="classERF.html#ab08081c75e6d926825071630f2adddab">metgrid_debug_isothermal</a>);</div>
-<div class="line"><a name="l01494"></a><span class="lineno"> 1494</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_dry&quot;</span>,        <a class="code" href="classERF.html#aaaa067c46e79ca3635d138750642b78d">metgrid_debug_dry</a>);</div>
-<div class="line"><a name="l01495"></a><span class="lineno"> 1495</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_psfc&quot;</span>,       <a class="code" href="classERF.html#ad256f0610d54caef208e2b2569a5aa82">metgrid_debug_psfc</a>);</div>
-<div class="line"><a name="l01496"></a><span class="lineno"> 1496</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_msf&quot;</span>,        <a class="code" href="classERF.html#a079811bdd498e155326a851e0c12f850">metgrid_debug_msf</a>);</div>
-<div class="line"><a name="l01497"></a><span class="lineno"> 1497</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_interp_theta&quot;</span>,     <a class="code" href="classERF.html#a7eac012575590fe374a8d4b5d9061546">metgrid_interp_theta</a>);</div>
-<div class="line"><a name="l01498"></a><span class="lineno"> 1498</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_basic_linear&quot;</span>,     <a class="code" href="classERF.html#a04831a5a6bf49d8386d362379db84358">metgrid_basic_linear</a>);</div>
-<div class="line"><a name="l01499"></a><span class="lineno"> 1499</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_use_below_sfc&quot;</span>,    <a class="code" href="classERF.html#a8eb60483e48302db4706d3b90c0ae8e4">metgrid_use_below_sfc</a>);</div>
-<div class="line"><a name="l01500"></a><span class="lineno"> 1500</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_use_sfc&quot;</span>,          <a class="code" href="classERF.html#a5d2fe657db8c3614db3e797566a49d68">metgrid_use_sfc</a>);</div>
-<div class="line"><a name="l01501"></a><span class="lineno"> 1501</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_retain_sfc&quot;</span>,       <a class="code" href="classERF.html#a51e327479a5c37c694bbf14eb8bce94f">metgrid_retain_sfc</a>);</div>
-<div class="line"><a name="l01502"></a><span class="lineno"> 1502</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_proximity&quot;</span>,        <a class="code" href="classERF.html#a95182a17e10556dde659d4dd891a4ed3">metgrid_proximity</a>);</div>
-<div class="line"><a name="l01503"></a><span class="lineno"> 1503</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_order&quot;</span>,            <a class="code" href="classERF.html#af27fd93c086c23ab8c754e63e1a0c425">metgrid_order</a>);</div>
-<div class="line"><a name="l01504"></a><span class="lineno"> 1504</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_force_sfc_k&quot;</span>,      <a class="code" href="classERF.html#a8767bdb5ac5b0a796dc478dc417e1606">metgrid_force_sfc_k</a>);</div>
-<div class="line"><a name="l01505"></a><span class="lineno"> 1505</span>&#160; </div>
-<div class="line"><a name="l01506"></a><span class="lineno"> 1506</span>&#160;        <span class="comment">// Set default to FullState for now ... later we will try Perturbation</span></div>
-<div class="line"><a name="l01507"></a><span class="lineno"> 1507</span>&#160;        <a class="code" href="classERF.html#a812912653fe0d8ab1342bfef4793dd0e">interpolation_type</a> = StateInterpType::FullState;</div>
-<div class="line"><a name="l01508"></a><span class="lineno"> 1508</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;interpolation_type&quot;</span>  ,<a class="code" href="classERF.html#a812912653fe0d8ab1342bfef4793dd0e">interpolation_type</a>);</div>
-<div class="line"><a name="l01509"></a><span class="lineno"> 1509</span>&#160; </div>
-<div class="line"><a name="l01510"></a><span class="lineno"> 1510</span>&#160;        PlotFileType plotfile_type_temp = PlotFileType::None;</div>
-<div class="line"><a name="l01511"></a><span class="lineno"> 1511</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type&quot;</span>  ,plotfile_type_temp);</div>
-<div class="line"><a name="l01512"></a><span class="lineno"> 1512</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type_1&quot;</span>,<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>);</div>
-<div class="line"><a name="l01513"></a><span class="lineno"> 1513</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type_2&quot;</span>,<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>);</div>
-<div class="line"><a name="l01514"></a><span class="lineno"> 1514</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l01515"></a><span class="lineno"> 1515</span>&#160;        <span class="comment">// This option is for backward consistency -- if only plotfile_type is set,</span></div>
-<div class="line"><a name="l01516"></a><span class="lineno"> 1516</span>&#160;        <span class="comment">//     then it will be used for both 1 and 2 if and only if they are not set</span></div>
-<div class="line"><a name="l01517"></a><span class="lineno"> 1517</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l01518"></a><span class="lineno"> 1518</span>&#160;        <span class="comment">// Default is native amrex if no type is specified</span></div>
-<div class="line"><a name="l01519"></a><span class="lineno"> 1519</span>&#160;        <span class="comment">//</span></div>
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-<div class="line"><a name="l01521"></a><span class="lineno"> 1521</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a> == PlotFileType::None) {</div>
-<div class="line"><a name="l01522"></a><span class="lineno"> 1522</span>&#160;                <a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>  = PlotFileType::Amrex;</div>
-<div class="line"><a name="l01523"></a><span class="lineno"> 1523</span>&#160;            }</div>
-<div class="line"><a name="l01524"></a><span class="lineno"> 1524</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::None) {</div>
-<div class="line"><a name="l01525"></a><span class="lineno"> 1525</span>&#160;                <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>  = PlotFileType::Amrex;</div>
-<div class="line"><a name="l01526"></a><span class="lineno"> 1526</span>&#160;            }</div>
-<div class="line"><a name="l01527"></a><span class="lineno"> 1527</span>&#160;        } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l01528"></a><span class="lineno"> 1528</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a> == PlotFileType::None) {</div>
-<div class="line"><a name="l01529"></a><span class="lineno"> 1529</span>&#160;                <a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>  = plotfile_type_temp;</div>
-<div class="line"><a name="l01530"></a><span class="lineno"> 1530</span>&#160;            } <span class="keywordflow">else</span> {</div>
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-<div class="line"><a name="l01532"></a><span class="lineno"> 1532</span>&#160;            }</div>
-<div class="line"><a name="l01533"></a><span class="lineno"> 1533</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::None) {</div>
-<div class="line"><a name="l01534"></a><span class="lineno"> 1534</span>&#160;                <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>  = plotfile_type_temp;</div>
-<div class="line"><a name="l01535"></a><span class="lineno"> 1535</span>&#160;            } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l01536"></a><span class="lineno"> 1536</span>&#160;                amrex::Abort(<span class="stringliteral">&quot;You must set either plotfile_type or plotfile_type_2, not both&quot;</span>);</div>
-<div class="line"><a name="l01537"></a><span class="lineno"> 1537</span>&#160;            }</div>
-<div class="line"><a name="l01538"></a><span class="lineno"> 1538</span>&#160;        }</div>
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-<div class="line"><a name="l01541"></a><span class="lineno"> 1541</span>&#160;            <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::Netcdf) {</div>
-<div class="line"><a name="l01542"></a><span class="lineno"> 1542</span>&#160;            amrex::Abort(<span class="stringliteral">&quot;Plotfile type = Netcdf is not allowed without USE_NETCDF = TRUE&quot;</span>);</div>
-<div class="line"><a name="l01543"></a><span class="lineno"> 1543</span>&#160;        }</div>
-<div class="line"><a name="l01544"></a><span class="lineno"> 1544</span>&#160;<span class="preprocessor">#endif</span></div>
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-<div class="line"><a name="l01547"></a><span class="lineno"> 1547</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_file_2&quot;</span>,   <a class="code" href="classERF.html#a18fa84b06132715757d97ec38678aa2c">plot_file_2</a>);</div>
-<div class="line"><a name="l01548"></a><span class="lineno"> 1548</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_int_1&quot;</span> , <a class="code" href="classERF.html#a57cfb4bfead8525174646964992c7e69">m_plot_int_1</a>);</div>
-<div class="line"><a name="l01549"></a><span class="lineno"> 1549</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_int_2&quot;</span> , <a class="code" href="classERF.html#ad3311c9ceacd17f34bdb5e03cefa33b3">m_plot_int_2</a>);</div>
-<div class="line"><a name="l01550"></a><span class="lineno"> 1550</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_per_1&quot;</span>,  <a class="code" href="classERF.html#a3167adc9518cce649a90ab82e9f9c85d">m_plot_per_1</a>);</div>
-<div class="line"><a name="l01551"></a><span class="lineno"> 1551</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_per_2&quot;</span>,  <a class="code" href="classERF.html#aff879a9c686293a10a3a03027b765c51">m_plot_per_2</a>);</div>
-<div class="line"><a name="l01552"></a><span class="lineno"> 1552</span>&#160; </div>
-<div class="line"><a name="l01553"></a><span class="lineno"> 1553</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;expand_plotvars_to_unif_rr&quot;</span>,<a class="code" href="classERF.html#adb272adf862040a2f1a6226c57c35627">m_expand_plotvars_to_unif_rr</a>);</div>
-<div class="line"><a name="l01554"></a><span class="lineno"> 1554</span>&#160; </div>
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-<div class="line"><a name="l01556"></a><span class="lineno"> 1556</span>&#160; </div>
-<div class="line"><a name="l01557"></a><span class="lineno"> 1557</span>&#160;        <span class="keywordflow">if</span> ( (<a class="code" href="classERF.html#a57cfb4bfead8525174646964992c7e69">m_plot_int_1</a> &gt; 0 &amp;&amp; <a class="code" href="classERF.html#a3167adc9518cce649a90ab82e9f9c85d">m_plot_per_1</a> &gt; 0) ||</div>
-<div class="line"><a name="l01558"></a><span class="lineno"> 1558</span>&#160;             (<a class="code" href="classERF.html#ad3311c9ceacd17f34bdb5e03cefa33b3">m_plot_int_2</a> &gt; 0 &amp;&amp; <a class="code" href="classERF.html#aff879a9c686293a10a3a03027b765c51">m_plot_per_2</a> &gt; 0.) ) {</div>
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+<div class="line"><a name="l01467"></a><span class="lineno"> 1467</span>&#160;        <a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a> = ( (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Real) || (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Metgrid) );</div>
+<div class="line"><a name="l01468"></a><span class="lineno"> 1468</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;use_real_bcs&quot;</span>,<a class="code" href="classERF.html#a86208285bf705f360a3c318a75097f61">use_real_bcs</a>);</div>
+<div class="line"><a name="l01469"></a><span class="lineno"> 1469</span>&#160; </div>
+<div class="line"><a name="l01470"></a><span class="lineno"> 1470</span>&#160;        <span class="comment">// We use this to keep track of how many boxes we read in from WRF initialization</span></div>
+<div class="line"><a name="l01471"></a><span class="lineno"> 1471</span>&#160;        <a class="code" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75">num_files_at_level</a>.resize(max_level+1,0);</div>
+<div class="line"><a name="l01472"></a><span class="lineno"> 1472</span>&#160; </div>
+<div class="line"><a name="l01473"></a><span class="lineno"> 1473</span>&#160;        <span class="comment">// We use this to keep track of how many boxes are specified thru the refinement indicators</span></div>
+<div class="line"><a name="l01474"></a><span class="lineno"> 1474</span>&#160;        <a class="code" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">num_boxes_at_level</a>.resize(max_level+1,0);</div>
+<div class="line"><a name="l01475"></a><span class="lineno"> 1475</span>&#160;            <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>.resize(max_level+1);</div>
+<div class="line"><a name="l01476"></a><span class="lineno"> 1476</span>&#160; </div>
+<div class="line"><a name="l01477"></a><span class="lineno"> 1477</span>&#160;        <span class="comment">// We always have exactly one file at level 0</span></div>
+<div class="line"><a name="l01478"></a><span class="lineno"> 1478</span>&#160;        <a class="code" href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">num_boxes_at_level</a>[0] = 1;</div>
+<div class="line"><a name="l01479"></a><span class="lineno"> 1479</span>&#160;        <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>[0].resize(1);</div>
+<div class="line"><a name="l01480"></a><span class="lineno"> 1480</span>&#160;        <a class="code" href="classERF.html#a050dbd236c9bf246554a53008e09f683">boxes_at_level</a>[0][0] = geom[0].Domain();</div>
+<div class="line"><a name="l01481"></a><span class="lineno"> 1481</span>&#160; </div>
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+<div class="line"><a name="l01484"></a><span class="lineno"> 1484</span>&#160; </div>
+<div class="line"><a name="l01485"></a><span class="lineno"> 1485</span>&#160;        <span class="comment">// NetCDF wrfinput initialization files -- possibly multiple files at each of multiple levels</span></div>
+<div class="line"><a name="l01486"></a><span class="lineno"> 1486</span>&#160;        <span class="comment">//        but we always have exactly one file at level 0</span></div>
+<div class="line"><a name="l01487"></a><span class="lineno"> 1487</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= max_level; lev++)</div>
+<div class="line"><a name="l01488"></a><span class="lineno"> 1488</span>&#160;        {</div>
+<div class="line"><a name="l01489"></a><span class="lineno"> 1489</span>&#160;            <span class="keyword">const</span> std::string nc_file_names = Concatenate(<span class="stringliteral">&quot;nc_init_file_&quot;</span>,lev,1);</div>
+<div class="line"><a name="l01490"></a><span class="lineno"> 1490</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.contains(nc_file_names.c_str()))</div>
+<div class="line"><a name="l01491"></a><span class="lineno"> 1491</span>&#160;            {</div>
+<div class="line"><a name="l01492"></a><span class="lineno"> 1492</span>&#160;                <span class="keywordtype">int</span> num_files = <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.countval(nc_file_names.c_str());</div>
+<div class="line"><a name="l01493"></a><span class="lineno"> 1493</span>&#160;                <a class="code" href="classERF.html#a610a988f46e0496e6dbd0471ae817f75">num_files_at_level</a>[lev] = num_files;</div>
+<div class="line"><a name="l01494"></a><span class="lineno"> 1494</span>&#160;                <a class="code" href="classERF.html#a7ef14f6028b577eba70aef46b508be19">nc_init_file</a>[lev].resize(num_files);</div>
+<div class="line"><a name="l01495"></a><span class="lineno"> 1495</span>&#160;                <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.queryarr(nc_file_names.c_str(), <a class="code" href="classERF.html#a7ef14f6028b577eba70aef46b508be19">nc_init_file</a>[lev],0,num_files);</div>
+<div class="line"><a name="l01496"></a><span class="lineno"> 1496</span>&#160;                <span class="keywordflow">for</span> (<span class="keywordtype">int</span> j = 0; j &lt; num_files; j++)</div>
+<div class="line"><a name="l01497"></a><span class="lineno"> 1497</span>&#160;                    Print() &lt;&lt; <span class="stringliteral">&quot;Reading NC init file names at level &quot;</span> &lt;&lt; lev &lt;&lt; <span class="stringliteral">&quot; and index &quot;</span> &lt;&lt; j &lt;&lt; <span class="stringliteral">&quot; : &quot;</span> &lt;&lt; <a class="code" href="classERF.html#a7ef14f6028b577eba70aef46b508be19">nc_init_file</a>[lev][j] &lt;&lt; std::endl;</div>
+<div class="line"><a name="l01498"></a><span class="lineno"> 1498</span>&#160;            }</div>
+<div class="line"><a name="l01499"></a><span class="lineno"> 1499</span>&#160;        }</div>
+<div class="line"><a name="l01500"></a><span class="lineno"> 1500</span>&#160; </div>
+<div class="line"><a name="l01501"></a><span class="lineno"> 1501</span>&#160;        <span class="comment">// NetCDF wrfbdy lateral boundary file</span></div>
+<div class="line"><a name="l01502"></a><span class="lineno"> 1502</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;nc_bdy_file&quot;</span>, <a class="code" href="classERF.html#a7e9040f32464f1a6dee6e0384393451d">nc_bdy_file</a>);</div>
+<div class="line"><a name="l01503"></a><span class="lineno"> 1503</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01504"></a><span class="lineno"> 1504</span>&#160; </div>
+<div class="line"><a name="l01505"></a><span class="lineno"> 1505</span>&#160;        <span class="comment">// Flag to trigger initialization from input_sounding like WRF&#39;s ideal.exe</span></div>
+<div class="line"><a name="l01506"></a><span class="lineno"> 1506</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;init_sounding_ideal&quot;</span>, <a class="code" href="classERF.html#a2eb81c590271b429f132103c9af25830">init_sounding_ideal</a>);</div>
+<div class="line"><a name="l01507"></a><span class="lineno"> 1507</span>&#160; </div>
+<div class="line"><a name="l01508"></a><span class="lineno"> 1508</span>&#160;        <span class="comment">// Options for vertical interpolation of met_em*.nc data.</span></div>
+<div class="line"><a name="l01509"></a><span class="lineno"> 1509</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_quiescent&quot;</span>,  <a class="code" href="classERF.html#a64c81ad5cd1b7d21c2e597b92596f113">metgrid_debug_quiescent</a>);</div>
+<div class="line"><a name="l01510"></a><span class="lineno"> 1510</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_isothermal&quot;</span>, <a class="code" href="classERF.html#ab08081c75e6d926825071630f2adddab">metgrid_debug_isothermal</a>);</div>
+<div class="line"><a name="l01511"></a><span class="lineno"> 1511</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_dry&quot;</span>,        <a class="code" href="classERF.html#aaaa067c46e79ca3635d138750642b78d">metgrid_debug_dry</a>);</div>
+<div class="line"><a name="l01512"></a><span class="lineno"> 1512</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_psfc&quot;</span>,       <a class="code" href="classERF.html#ad256f0610d54caef208e2b2569a5aa82">metgrid_debug_psfc</a>);</div>
+<div class="line"><a name="l01513"></a><span class="lineno"> 1513</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_debug_msf&quot;</span>,        <a class="code" href="classERF.html#a079811bdd498e155326a851e0c12f850">metgrid_debug_msf</a>);</div>
+<div class="line"><a name="l01514"></a><span class="lineno"> 1514</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_interp_theta&quot;</span>,     <a class="code" href="classERF.html#a7eac012575590fe374a8d4b5d9061546">metgrid_interp_theta</a>);</div>
+<div class="line"><a name="l01515"></a><span class="lineno"> 1515</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_basic_linear&quot;</span>,     <a class="code" href="classERF.html#a04831a5a6bf49d8386d362379db84358">metgrid_basic_linear</a>);</div>
+<div class="line"><a name="l01516"></a><span class="lineno"> 1516</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_use_below_sfc&quot;</span>,    <a class="code" href="classERF.html#a8eb60483e48302db4706d3b90c0ae8e4">metgrid_use_below_sfc</a>);</div>
+<div class="line"><a name="l01517"></a><span class="lineno"> 1517</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_use_sfc&quot;</span>,          <a class="code" href="classERF.html#a5d2fe657db8c3614db3e797566a49d68">metgrid_use_sfc</a>);</div>
+<div class="line"><a name="l01518"></a><span class="lineno"> 1518</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_retain_sfc&quot;</span>,       <a class="code" href="classERF.html#a51e327479a5c37c694bbf14eb8bce94f">metgrid_retain_sfc</a>);</div>
+<div class="line"><a name="l01519"></a><span class="lineno"> 1519</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_proximity&quot;</span>,        <a class="code" href="classERF.html#a95182a17e10556dde659d4dd891a4ed3">metgrid_proximity</a>);</div>
+<div class="line"><a name="l01520"></a><span class="lineno"> 1520</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_order&quot;</span>,            <a class="code" href="classERF.html#af27fd93c086c23ab8c754e63e1a0c425">metgrid_order</a>);</div>
+<div class="line"><a name="l01521"></a><span class="lineno"> 1521</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;metgrid_force_sfc_k&quot;</span>,      <a class="code" href="classERF.html#a8767bdb5ac5b0a796dc478dc417e1606">metgrid_force_sfc_k</a>);</div>
+<div class="line"><a name="l01522"></a><span class="lineno"> 1522</span>&#160; </div>
+<div class="line"><a name="l01523"></a><span class="lineno"> 1523</span>&#160;        <span class="comment">// Set default to FullState for now ... later we will try Perturbation</span></div>
+<div class="line"><a name="l01524"></a><span class="lineno"> 1524</span>&#160;        <a class="code" href="classERF.html#a812912653fe0d8ab1342bfef4793dd0e">interpolation_type</a> = StateInterpType::FullState;</div>
+<div class="line"><a name="l01525"></a><span class="lineno"> 1525</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;interpolation_type&quot;</span>  ,<a class="code" href="classERF.html#a812912653fe0d8ab1342bfef4793dd0e">interpolation_type</a>);</div>
+<div class="line"><a name="l01526"></a><span class="lineno"> 1526</span>&#160; </div>
+<div class="line"><a name="l01527"></a><span class="lineno"> 1527</span>&#160;        PlotFileType plotfile_type_temp = PlotFileType::None;</div>
+<div class="line"><a name="l01528"></a><span class="lineno"> 1528</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type&quot;</span>  ,plotfile_type_temp);</div>
+<div class="line"><a name="l01529"></a><span class="lineno"> 1529</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type_1&quot;</span>,<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>);</div>
+<div class="line"><a name="l01530"></a><span class="lineno"> 1530</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query_enum_case_insensitive(<span class="stringliteral">&quot;plotfile_type_2&quot;</span>,<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>);</div>
+<div class="line"><a name="l01531"></a><span class="lineno"> 1531</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l01532"></a><span class="lineno"> 1532</span>&#160;        <span class="comment">// This option is for backward consistency -- if only plotfile_type is set,</span></div>
+<div class="line"><a name="l01533"></a><span class="lineno"> 1533</span>&#160;        <span class="comment">//     then it will be used for both 1 and 2 if and only if they are not set</span></div>
+<div class="line"><a name="l01534"></a><span class="lineno"> 1534</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l01535"></a><span class="lineno"> 1535</span>&#160;        <span class="comment">// Default is native amrex if no type is specified</span></div>
+<div class="line"><a name="l01536"></a><span class="lineno"> 1536</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l01537"></a><span class="lineno"> 1537</span>&#160;        <span class="keywordflow">if</span> (plotfile_type_temp == PlotFileType::None) {</div>
+<div class="line"><a name="l01538"></a><span class="lineno"> 1538</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a> == PlotFileType::None) {</div>
+<div class="line"><a name="l01539"></a><span class="lineno"> 1539</span>&#160;                <a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>  = PlotFileType::Amrex;</div>
+<div class="line"><a name="l01540"></a><span class="lineno"> 1540</span>&#160;            }</div>
+<div class="line"><a name="l01541"></a><span class="lineno"> 1541</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::None) {</div>
+<div class="line"><a name="l01542"></a><span class="lineno"> 1542</span>&#160;                <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>  = PlotFileType::Amrex;</div>
+<div class="line"><a name="l01543"></a><span class="lineno"> 1543</span>&#160;            }</div>
+<div class="line"><a name="l01544"></a><span class="lineno"> 1544</span>&#160;        } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l01545"></a><span class="lineno"> 1545</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a> == PlotFileType::None) {</div>
+<div class="line"><a name="l01546"></a><span class="lineno"> 1546</span>&#160;                <a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a>  = plotfile_type_temp;</div>
+<div class="line"><a name="l01547"></a><span class="lineno"> 1547</span>&#160;            } <span class="keywordflow">else</span> {</div>
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+<div class="line"><a name="l01549"></a><span class="lineno"> 1549</span>&#160;            }</div>
+<div class="line"><a name="l01550"></a><span class="lineno"> 1550</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::None) {</div>
+<div class="line"><a name="l01551"></a><span class="lineno"> 1551</span>&#160;                <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a>  = plotfile_type_temp;</div>
+<div class="line"><a name="l01552"></a><span class="lineno"> 1552</span>&#160;            } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l01553"></a><span class="lineno"> 1553</span>&#160;                amrex::Abort(<span class="stringliteral">&quot;You must set either plotfile_type or plotfile_type_2, not both&quot;</span>);</div>
+<div class="line"><a name="l01554"></a><span class="lineno"> 1554</span>&#160;            }</div>
+<div class="line"><a name="l01555"></a><span class="lineno"> 1555</span>&#160;        }</div>
+<div class="line"><a name="l01556"></a><span class="lineno"> 1556</span>&#160;<span class="preprocessor">#ifndef ERF_USE_NETCDF</span></div>
+<div class="line"><a name="l01557"></a><span class="lineno"> 1557</span>&#160;        <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a184511b7b9b7d4beef453f5d5d679c54">plotfile_type_1</a> == PlotFileType::Netcdf ||</div>
+<div class="line"><a name="l01558"></a><span class="lineno"> 1558</span>&#160;            <a class="code" href="classERF.html#a980e94505df2ee0925612b004126df77">plotfile_type_2</a> == PlotFileType::Netcdf) {</div>
+<div class="line"><a name="l01559"></a><span class="lineno"> 1559</span>&#160;            amrex::Abort(<span class="stringliteral">&quot;Plotfile type = Netcdf is not allowed without USE_NETCDF = TRUE&quot;</span>);</div>
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-<div class="line"><a name="l01563"></a><span class="lineno"> 1563</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;destag_profiles&quot;</span>, <a class="code" href="classERF.html#a65f19c55c8d3669445866a1c3bbb628d">destag_profiles</a>);</div>
-<div class="line"><a name="l01564"></a><span class="lineno"> 1564</span>&#160; </div>
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-<div class="line"><a name="l01566"></a><span class="lineno"> 1566</span>&#160;<span class="preprocessor">#ifdef ERF_USE_RRTMGP</span></div>
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-<div class="line"><a name="l01568"></a><span class="lineno"> 1568</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01561"></a><span class="lineno"> 1561</span>&#160;<span class="preprocessor">#endif</span></div>
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+<div class="line"><a name="l01563"></a><span class="lineno"> 1563</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_file_1&quot;</span>,   <a class="code" href="classERF.html#aa54aaa938a18d34caa4d86e977647899">plot_file_1</a>);</div>
+<div class="line"><a name="l01564"></a><span class="lineno"> 1564</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_file_2&quot;</span>,   <a class="code" href="classERF.html#a18fa84b06132715757d97ec38678aa2c">plot_file_2</a>);</div>
+<div class="line"><a name="l01565"></a><span class="lineno"> 1565</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_int_1&quot;</span> , <a class="code" href="classERF.html#a57cfb4bfead8525174646964992c7e69">m_plot_int_1</a>);</div>
+<div class="line"><a name="l01566"></a><span class="lineno"> 1566</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_int_2&quot;</span> , <a class="code" href="classERF.html#ad3311c9ceacd17f34bdb5e03cefa33b3">m_plot_int_2</a>);</div>
+<div class="line"><a name="l01567"></a><span class="lineno"> 1567</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_per_1&quot;</span>,  <a class="code" href="classERF.html#a3167adc9518cce649a90ab82e9f9c85d">m_plot_per_1</a>);</div>
+<div class="line"><a name="l01568"></a><span class="lineno"> 1568</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_per_2&quot;</span>,  <a class="code" href="classERF.html#aff879a9c686293a10a3a03027b765c51">m_plot_per_2</a>);</div>
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-<div class="line"><a name="l01571"></a><span class="lineno"> 1571</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_per&quot;</span>, <a class="code" href="classERF.html#a7b0175190c6fcf829c7f2841f729b12a">column_per</a>);</div>
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-<div class="line"><a name="l01573"></a><span class="lineno"> 1573</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_loc_x&quot;</span>, <a class="code" href="classERF.html#a930b7d48218b3fc41d8719b50b3f6086">column_loc_x</a>);</div>
-<div class="line"><a name="l01574"></a><span class="lineno"> 1574</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_loc_y&quot;</span>, <a class="code" href="classERF.html#a2b911f3a5a324813b1ff4462df6044a6">column_loc_y</a>);</div>
-<div class="line"><a name="l01575"></a><span class="lineno"> 1575</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_file_name&quot;</span>, <a class="code" href="classERF.html#a48bba6b1c1b39940b09aefbe56311e2f">column_file_name</a>);</div>
-<div class="line"><a name="l01576"></a><span class="lineno"> 1576</span>&#160; </div>
-<div class="line"><a name="l01577"></a><span class="lineno"> 1577</span>&#160;        <span class="comment">// Sampler output frequency</span></div>
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-<div class="line"><a name="l01579"></a><span class="lineno"> 1579</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;sampler_interval&quot;</span>, <a class="code" href="classERF.html#ad13532a7eebe8a7473dfe5ed9a828fe8">sampler_interval</a>);</div>
-<div class="line"><a name="l01580"></a><span class="lineno"> 1580</span>&#160; </div>
-<div class="line"><a name="l01581"></a><span class="lineno"> 1581</span>&#160;        <span class="comment">// Specify information about outputting planes of data</span></div>
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-<div class="line"><a name="l01583"></a><span class="lineno"> 1583</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_planes_interval&quot;</span>, <a class="code" href="classERF.html#aab4575d8fb57595a2f1aaf088c60447a">bndry_output_planes_interval</a>);</div>
-<div class="line"><a name="l01584"></a><span class="lineno"> 1584</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_planes_per&quot;</span>, <a class="code" href="classERF.html#a5f99e949c83d86507e003ae556cf7c22">bndry_output_planes_per</a>);</div>
-<div class="line"><a name="l01585"></a><span class="lineno"> 1585</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_start_time&quot;</span>, <a class="code" href="classERF.html#a87e58f16f44a6cb35d6983ed3fe7d3c1">bndry_output_planes_start_time</a>);</div>
+<div class="line"><a name="l01570"></a><span class="lineno"> 1570</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;expand_plotvars_to_unif_rr&quot;</span>,<a class="code" href="classERF.html#adb272adf862040a2f1a6226c57c35627">m_expand_plotvars_to_unif_rr</a>);</div>
+<div class="line"><a name="l01571"></a><span class="lineno"> 1571</span>&#160; </div>
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+<div class="line"><a name="l01573"></a><span class="lineno"> 1573</span>&#160; </div>
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+<div class="line"><a name="l01575"></a><span class="lineno"> 1575</span>&#160;             (<a class="code" href="classERF.html#ad3311c9ceacd17f34bdb5e03cefa33b3">m_plot_int_2</a> &gt; 0 &amp;&amp; <a class="code" href="classERF.html#aff879a9c686293a10a3a03027b765c51">m_plot_per_2</a> &gt; 0.) ) {</div>
+<div class="line"><a name="l01576"></a><span class="lineno"> 1576</span>&#160;            Abort(<span class="stringliteral">&quot;Must choose only one of plot_int or plot_per&quot;</span>);</div>
+<div class="line"><a name="l01577"></a><span class="lineno"> 1577</span>&#160;        }</div>
+<div class="line"><a name="l01578"></a><span class="lineno"> 1578</span>&#160; </div>
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+<div class="line"><a name="l01580"></a><span class="lineno"> 1580</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;destag_profiles&quot;</span>, <a class="code" href="classERF.html#a65f19c55c8d3669445866a1c3bbb628d">destag_profiles</a>);</div>
+<div class="line"><a name="l01581"></a><span class="lineno"> 1581</span>&#160; </div>
+<div class="line"><a name="l01582"></a><span class="lineno"> 1582</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_lsm&quot;</span>, <a class="code" href="classERF.html#afc653b103aa26c56acafed85cdd95f52">plot_lsm</a>);</div>
+<div class="line"><a name="l01583"></a><span class="lineno"> 1583</span>&#160;<span class="preprocessor">#ifdef ERF_USE_RRTMGP</span></div>
+<div class="line"><a name="l01584"></a><span class="lineno"> 1584</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;plot_rad&quot;</span>, plot_rad);</div>
+<div class="line"><a name="l01585"></a><span class="lineno"> 1585</span>&#160;<span class="preprocessor">#endif</span></div>
 <div class="line"><a name="l01586"></a><span class="lineno"> 1586</span>&#160; </div>
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-<div class="line"><a name="l01589"></a><span class="lineno"> 1589</span>&#160; </div>
-<div class="line"><a name="l01590"></a><span class="lineno"> 1590</span>&#160;        <span class="comment">// Query the set and total widths for wrfbdy interior ghost cells</span></div>
-<div class="line"><a name="l01591"></a><span class="lineno"> 1591</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;real_width&quot;</span>, <a class="code" href="classERF.html#abb15119348ad5399947bc8883084b230">real_width</a>);</div>
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+<div class="line"><a name="l01587"></a><span class="lineno"> 1587</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;output_1d_column&quot;</span>, <a class="code" href="classERF.html#ad17ff2753e754ff3eb1330612b820b5f">output_1d_column</a>);</div>
+<div class="line"><a name="l01588"></a><span class="lineno"> 1588</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_per&quot;</span>, <a class="code" href="classERF.html#a7b0175190c6fcf829c7f2841f729b12a">column_per</a>);</div>
+<div class="line"><a name="l01589"></a><span class="lineno"> 1589</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_interval&quot;</span>, <a class="code" href="classERF.html#afa0bef6d3146788302b81c0d4f4802d1">column_interval</a>);</div>
+<div class="line"><a name="l01590"></a><span class="lineno"> 1590</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_loc_x&quot;</span>, <a class="code" href="classERF.html#a930b7d48218b3fc41d8719b50b3f6086">column_loc_x</a>);</div>
+<div class="line"><a name="l01591"></a><span class="lineno"> 1591</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_loc_y&quot;</span>, <a class="code" href="classERF.html#a2b911f3a5a324813b1ff4462df6044a6">column_loc_y</a>);</div>
+<div class="line"><a name="l01592"></a><span class="lineno"> 1592</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;column_file_name&quot;</span>, <a class="code" href="classERF.html#a48bba6b1c1b39940b09aefbe56311e2f">column_file_name</a>);</div>
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+<div class="line"><a name="l01594"></a><span class="lineno"> 1594</span>&#160;        <span class="comment">// Sampler output frequency</span></div>
+<div class="line"><a name="l01595"></a><span class="lineno"> 1595</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;sampler_per&quot;</span>, <a class="code" href="classERF.html#a8bfff875038f8c24055067117e192960">sampler_per</a>);</div>
+<div class="line"><a name="l01596"></a><span class="lineno"> 1596</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;sampler_interval&quot;</span>, <a class="code" href="classERF.html#ad13532a7eebe8a7473dfe5ed9a828fe8">sampler_interval</a>);</div>
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-<div class="line"><a name="l01601"></a><span class="lineno"> 1601</span>&#160;        <span class="keywordflow">if</span> (!iterate) SetIterateToFalse();</div>
-<div class="line"><a name="l01602"></a><span class="lineno"> 1602</span>&#160;    }</div>
+<div class="line"><a name="l01598"></a><span class="lineno"> 1598</span>&#160;        <span class="comment">// Specify information about outputting planes of data</span></div>
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+<div class="line"><a name="l01600"></a><span class="lineno"> 1600</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_planes_interval&quot;</span>, <a class="code" href="classERF.html#aab4575d8fb57595a2f1aaf088c60447a">bndry_output_planes_interval</a>);</div>
+<div class="line"><a name="l01601"></a><span class="lineno"> 1601</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_planes_per&quot;</span>, <a class="code" href="classERF.html#a5f99e949c83d86507e003ae556cf7c22">bndry_output_planes_per</a>);</div>
+<div class="line"><a name="l01602"></a><span class="lineno"> 1602</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;bndry_output_start_time&quot;</span>, <a class="code" href="classERF.html#a87e58f16f44a6cb35d6983ed3fe7d3c1">bndry_output_planes_start_time</a>);</div>
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-<div class="line"><a name="l01617"></a><span class="lineno"> 1617</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aed9118172b234c3a0069a78776d09baa">do_forest_drag</a>) {</div>
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-<div class="line"><a name="l01619"></a><span class="lineno"> 1619</span>&#160;            <a class="code" href="classERF.html#a8b181e6ed0bb62d79e4a62555210abc9">m_forest_drag</a>[lev] = std::make_unique&lt;ForestDrag&gt;(forestfile);</div>
-<div class="line"><a name="l01620"></a><span class="lineno"> 1620</span>&#160;        }</div>
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-<div class="line"><a name="l01622"></a><span class="lineno"> 1622</span>&#160; </div>
-<div class="line"><a name="l01623"></a><span class="lineno"> 1623</span>&#160;    <span class="comment">// No moving terrain with init real (we must do this after init_params</span></div>
-<div class="line"><a name="l01624"></a><span class="lineno"> 1624</span>&#160;    <span class="comment">//    because that is where we set terrain_type</span></div>
-<div class="line"><a name="l01625"></a><span class="lineno"> 1625</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Real &amp;&amp; <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh) {</div>
-<div class="line"><a name="l01626"></a><span class="lineno"> 1626</span>&#160;        Abort(<span class="stringliteral">&quot;Moving terrain is not supported with init real&quot;</span>);</div>
-<div class="line"><a name="l01627"></a><span class="lineno"> 1627</span>&#160;    }</div>
+<div class="line"><a name="l01604"></a><span class="lineno"> 1604</span>&#160;        <span class="comment">// Specify whether ingest boundary planes of data</span></div>
+<div class="line"><a name="l01605"></a><span class="lineno"> 1605</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;input_bndry_planes&quot;</span>, <a class="code" href="classERF.html#a80ad08512968ec45635df68abe66b1fc">input_bndry_planes</a>);</div>
+<div class="line"><a name="l01606"></a><span class="lineno"> 1606</span>&#160; </div>
+<div class="line"><a name="l01607"></a><span class="lineno"> 1607</span>&#160;        <span class="comment">// Query the set and total widths for wrfbdy interior ghost cells</span></div>
+<div class="line"><a name="l01608"></a><span class="lineno"> 1608</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;real_width&quot;</span>, <a class="code" href="classERF.html#abb15119348ad5399947bc8883084b230">real_width</a>);</div>
+<div class="line"><a name="l01609"></a><span class="lineno"> 1609</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;real_set_width&quot;</span>, <a class="code" href="classERF.html#acab120bb9324e7298534d765c447d703">real_set_width</a>);</div>
+<div class="line"><a name="l01610"></a><span class="lineno"> 1610</span>&#160; </div>
+<div class="line"><a name="l01611"></a><span class="lineno"> 1611</span>&#160;        <span class="comment">// Query the set and total widths for crse-fine interior ghost cells</span></div>
+<div class="line"><a name="l01612"></a><span class="lineno"> 1612</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;cf_width&quot;</span>, <a class="code" href="classERF.html#ad9084179f7384e10a519989ffd51fd34">cf_width</a>);</div>
+<div class="line"><a name="l01613"></a><span class="lineno"> 1613</span>&#160;        <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;cf_set_width&quot;</span>, <a class="code" href="classERF.html#a1e3e2855b6e811596226c167573ad62d">cf_set_width</a>);</div>
+<div class="line"><a name="l01614"></a><span class="lineno"> 1614</span>&#160; </div>
+<div class="line"><a name="l01615"></a><span class="lineno"> 1615</span>&#160;        <span class="comment">// AmrMesh iterate on grids?</span></div>
+<div class="line"><a name="l01616"></a><span class="lineno"> 1616</span>&#160;        <span class="keywordtype">bool</span> iterate(<span class="keyword">true</span>);</div>
+<div class="line"><a name="l01617"></a><span class="lineno"> 1617</span>&#160;        pp_amr.query(<span class="stringliteral">&quot;iterate_grids&quot;</span>,iterate);</div>
+<div class="line"><a name="l01618"></a><span class="lineno"> 1618</span>&#160;        <span class="keywordflow">if</span> (!iterate) SetIterateToFalse();</div>
+<div class="line"><a name="l01619"></a><span class="lineno"> 1619</span>&#160;    }</div>
+<div class="line"><a name="l01620"></a><span class="lineno"> 1620</span>&#160; </div>
+<div class="line"><a name="l01621"></a><span class="lineno"> 1621</span>&#160;<span class="preprocessor">#ifdef ERF_USE_PARTICLES</span></div>
+<div class="line"><a name="l01622"></a><span class="lineno"> 1622</span>&#160;    readTracersParams();</div>
+<div class="line"><a name="l01623"></a><span class="lineno"> 1623</span>&#160;<span class="preprocessor">#endif</span></div>
+<div class="line"><a name="l01624"></a><span class="lineno"> 1624</span>&#160; </div>
+<div class="line"><a name="l01625"></a><span class="lineno"> 1625</span>&#160;<span class="preprocessor">#ifdef ERF_USE_MULTIBLOCK</span></div>
+<div class="line"><a name="l01626"></a><span class="lineno"> 1626</span>&#160;    <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a4b0edf29a032ff18b10a42825fa9e4b6">pp_prefix</a> = <a class="code" href="classERF.html#a59df30e7a5537c8543bb00772bd98b58">pp_prefix</a>;</div>
+<div class="line"><a name="l01627"></a><span class="lineno"> 1627</span>&#160;<span class="preprocessor">#endif</span></div>
 <div class="line"><a name="l01628"></a><span class="lineno"> 1628</span>&#160; </div>
-<div class="line"><a name="l01629"></a><span class="lineno"> 1629</span>&#160;    <span class="comment">// What type of land surface model to use</span></div>
-<div class="line"><a name="l01630"></a><span class="lineno"> 1630</span>&#160;    <span class="comment">// NOTE: Must be checked after init_params</span></div>
-<div class="line"><a name="l01631"></a><span class="lineno"> 1631</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::SLM) {</div>
-<div class="line"><a name="l01632"></a><span class="lineno"> 1632</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classSLM.html">SLM</a>&gt;();</div>
-<div class="line"><a name="l01633"></a><span class="lineno"> 1633</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;SLM land surface model!\n&quot;</span>;</div>
-<div class="line"><a name="l01634"></a><span class="lineno"> 1634</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::MM5) {</div>
-<div class="line"><a name="l01635"></a><span class="lineno"> 1635</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classMM5.html">MM5</a>&gt;();</div>
-<div class="line"><a name="l01636"></a><span class="lineno"> 1636</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;MM5 land surface model!\n&quot;</span>;</div>
-<div class="line"><a name="l01637"></a><span class="lineno"> 1637</span>&#160;<span class="preprocessor">#ifdef ERF_USE_NOAH</span></div>
-<div class="line"><a name="l01638"></a><span class="lineno"> 1638</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::NOAH) {</div>
-<div class="line"><a name="l01639"></a><span class="lineno"> 1639</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classNOAH.html">NOAH</a>&gt;();</div>
-<div class="line"><a name="l01640"></a><span class="lineno"> 1640</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;NOAH land surface model!\n&quot;</span>;</div>
-<div class="line"><a name="l01641"></a><span class="lineno"> 1641</span>&#160;<span class="preprocessor">#endif</span></div>
-<div class="line"><a name="l01642"></a><span class="lineno"> 1642</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::None) {</div>
-<div class="line"><a name="l01643"></a><span class="lineno"> 1643</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classNullSurf.html">NullSurf</a>&gt;();</div>
-<div class="line"><a name="l01644"></a><span class="lineno"> 1644</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;Null land surface model!\n&quot;</span>;</div>
-<div class="line"><a name="l01645"></a><span class="lineno"> 1645</span>&#160;    } <span class="keywordflow">else</span> {</div>
-<div class="line"><a name="l01646"></a><span class="lineno"> 1646</span>&#160;        Abort(<span class="stringliteral">&quot;Dont know this LandSurfaceType!&quot;</span>) ;</div>
-<div class="line"><a name="l01647"></a><span class="lineno"> 1647</span>&#160;    }</div>
-<div class="line"><a name="l01648"></a><span class="lineno"> 1648</span>&#160; </div>
-<div class="line"><a name="l01649"></a><span class="lineno"> 1649</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a43d0b17f6e155691a1e9474526df3af5">verbose</a> &gt; 0) {</div>
-<div class="line"><a name="l01650"></a><span class="lineno"> 1650</span>&#160;        <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a9d26abef2007eb7c93180b0a6699cf8e">display</a>(max_level);</div>
-<div class="line"><a name="l01651"></a><span class="lineno"> 1651</span>&#160;    }</div>
-<div class="line"><a name="l01652"></a><span class="lineno"> 1652</span>&#160; </div>
-<div class="line"><a name="l01653"></a><span class="lineno"> 1653</span>&#160;    <a class="code" href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ParameterSanityChecks</a>();</div>
-<div class="line"><a name="l01654"></a><span class="lineno"> 1654</span>&#160;}</div>
+<div class="line"><a name="l01629"></a><span class="lineno"> 1629</span>&#160;    <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a8c15b7cf354e53ddb58bad9577d124d5">init_params</a>(max_level);</div>
+<div class="line"><a name="l01630"></a><span class="lineno"> 1630</span>&#160; </div>
+<div class="line"><a name="l01631"></a><span class="lineno"> 1631</span>&#160;    <span class="comment">// Query the canopy model file name</span></div>
+<div class="line"><a name="l01632"></a><span class="lineno"> 1632</span>&#160;    std::string forestfile;</div>
+<div class="line"><a name="l01633"></a><span class="lineno"> 1633</span>&#160;    <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aed9118172b234c3a0069a78776d09baa">do_forest_drag</a> = <a class="code" href="ERF__MicrophysicsUtils_8H.html#ac54f1d17d8842acb42b2312cd353e469">pp</a>.query(<span class="stringliteral">&quot;forest_file&quot;</span>, forestfile);</div>
+<div class="line"><a name="l01634"></a><span class="lineno"> 1634</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aed9118172b234c3a0069a78776d09baa">do_forest_drag</a>) {</div>
+<div class="line"><a name="l01635"></a><span class="lineno"> 1635</span>&#160;        <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= max_level; ++lev) {</div>
+<div class="line"><a name="l01636"></a><span class="lineno"> 1636</span>&#160;            <a class="code" href="classERF.html#a8b181e6ed0bb62d79e4a62555210abc9">m_forest_drag</a>[lev] = std::make_unique&lt;ForestDrag&gt;(forestfile);</div>
+<div class="line"><a name="l01637"></a><span class="lineno"> 1637</span>&#160;        }</div>
+<div class="line"><a name="l01638"></a><span class="lineno"> 1638</span>&#160;    }</div>
+<div class="line"><a name="l01639"></a><span class="lineno"> 1639</span>&#160; </div>
+<div class="line"><a name="l01640"></a><span class="lineno"> 1640</span>&#160;    <span class="comment">// No moving terrain with init real (we must do this after init_params</span></div>
+<div class="line"><a name="l01641"></a><span class="lineno"> 1641</span>&#160;    <span class="comment">//    because that is where we set terrain_type</span></div>
+<div class="line"><a name="l01642"></a><span class="lineno"> 1642</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a56ae431ddda8577a797dd939e53a593a">init_type</a> == InitType::Real &amp;&amp; <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::MovingFittedMesh) {</div>
+<div class="line"><a name="l01643"></a><span class="lineno"> 1643</span>&#160;        Abort(<span class="stringliteral">&quot;Moving terrain is not supported with init real&quot;</span>);</div>
+<div class="line"><a name="l01644"></a><span class="lineno"> 1644</span>&#160;    }</div>
+<div class="line"><a name="l01645"></a><span class="lineno"> 1645</span>&#160; </div>
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+<div class="line"><a name="l01647"></a><span class="lineno"> 1647</span>&#160;    <span class="comment">// NOTE: Must be checked after init_params</span></div>
+<div class="line"><a name="l01648"></a><span class="lineno"> 1648</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::SLM) {</div>
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+<div class="line"><a name="l01650"></a><span class="lineno"> 1650</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;SLM land surface model!\n&quot;</span>;</div>
+<div class="line"><a name="l01651"></a><span class="lineno"> 1651</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a43c1741535574c7e6f4fe6bf90552f31">lsm_type</a> == LandSurfaceType::MM5) {</div>
+<div class="line"><a name="l01652"></a><span class="lineno"> 1652</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classMM5.html">MM5</a>&gt;();</div>
+<div class="line"><a name="l01653"></a><span class="lineno"> 1653</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;MM5 land surface model!\n&quot;</span>;</div>
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+<div class="line"><a name="l01656"></a><span class="lineno"> 1656</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classNOAH.html">NOAH</a>&gt;();</div>
+<div class="line"><a name="l01657"></a><span class="lineno"> 1657</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;NOAH land surface model!\n&quot;</span>;</div>
+<div class="line"><a name="l01658"></a><span class="lineno"> 1658</span>&#160;<span class="preprocessor">#endif</span></div>
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+<div class="line"><a name="l01660"></a><span class="lineno"> 1660</span>&#160;        <a class="code" href="classERF.html#ae0e9a78f120ba632d78cbf23c97b851c">lsm</a>.<a class="code" href="classLandSurface.html#a91df3382b60a6566b78a23c87b46f065">SetModel</a>&lt;<a class="code" href="classNullSurf.html">NullSurf</a>&gt;();</div>
+<div class="line"><a name="l01661"></a><span class="lineno"> 1661</span>&#160;        Print() &lt;&lt; <span class="stringliteral">&quot;Null land surface model!\n&quot;</span>;</div>
+<div class="line"><a name="l01662"></a><span class="lineno"> 1662</span>&#160;    } <span class="keywordflow">else</span> {</div>
+<div class="line"><a name="l01663"></a><span class="lineno"> 1663</span>&#160;        Abort(<span class="stringliteral">&quot;Dont know this LandSurfaceType!&quot;</span>) ;</div>
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+<div class="line"><a name="l01665"></a><span class="lineno"> 1665</span>&#160; </div>
+<div class="line"><a name="l01666"></a><span class="lineno"> 1666</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a43d0b17f6e155691a1e9474526df3af5">verbose</a> &gt; 0) {</div>
+<div class="line"><a name="l01667"></a><span class="lineno"> 1667</span>&#160;        <a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#a9d26abef2007eb7c93180b0a6699cf8e">display</a>(max_level);</div>
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+<div class="line"><a name="l01669"></a><span class="lineno"> 1669</span>&#160; </div>
+<div class="line"><a name="l01670"></a><span class="lineno"> 1670</span>&#160;    <a class="code" href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ParameterSanityChecks</a>();</div>
+<div class="line"><a name="l01671"></a><span class="lineno"> 1671</span>&#160;}</div>
 <div class="ttc" id="aclassERF_html_a04831a5a6bf49d8386d362379db84358"><div class="ttname"><a href="classERF.html#a04831a5a6bf49d8386d362379db84358">ERF::metgrid_basic_linear</a></div><div class="ttdeci">bool metgrid_basic_linear</div><div class="ttdef"><b>Definition:</b> ERF.H:1084</div></div>
 <div class="ttc" id="aclassERF_html_a050dbd236c9bf246554a53008e09f683"><div class="ttname"><a href="classERF.html#a050dbd236c9bf246554a53008e09f683">ERF::boxes_at_level</a></div><div class="ttdeci">amrex::Vector&lt; amrex::Vector&lt; amrex::Box &gt; &gt; boxes_at_level</div><div class="ttdef"><b>Definition:</b> ERF.H:719</div></div>
 <div class="ttc" id="aclassERF_html_a079811bdd498e155326a851e0c12f850"><div class="ttname"><a href="classERF.html#a079811bdd498e155326a851e0c12f850">ERF::metgrid_debug_msf</a></div><div class="ttdeci">bool metgrid_debug_msf</div><div class="ttdef"><b>Definition:</b> ERF.H:1082</div></div>
@@ -13857,7 +13872,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#a2d39cd3bdc3d90609ad3b14e
 <div class="ttc" id="aclassERF_html_aaaa067c46e79ca3635d138750642b78d"><div class="ttname"><a href="classERF.html#aaaa067c46e79ca3635d138750642b78d">ERF::metgrid_debug_dry</a></div><div class="ttdeci">bool metgrid_debug_dry</div><div class="ttdef"><b>Definition:</b> ERF.H:1080</div></div>
 <div class="ttc" id="aclassERF_html_ab08081c75e6d926825071630f2adddab"><div class="ttname"><a href="classERF.html#ab08081c75e6d926825071630f2adddab">ERF::metgrid_debug_isothermal</a></div><div class="ttdeci">bool metgrid_debug_isothermal</div><div class="ttdef"><b>Definition:</b> ERF.H:1079</div></div>
 <div class="ttc" id="aclassERF_html_ad256f0610d54caef208e2b2569a5aa82"><div class="ttname"><a href="classERF.html#ad256f0610d54caef208e2b2569a5aa82">ERF::metgrid_debug_psfc</a></div><div class="ttdeci">bool metgrid_debug_psfc</div><div class="ttdef"><b>Definition:</b> ERF.H:1081</div></div>
-<div class="ttc" id="aclassERF_html_ad71a033b3fd107465a8621eaf7c77b28"><div class="ttname"><a href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ERF::ParameterSanityChecks</a></div><div class="ttdeci">void ParameterSanityChecks()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1658</div></div>
+<div class="ttc" id="aclassERF_html_ad71a033b3fd107465a8621eaf7c77b28"><div class="ttname"><a href="classERF.html#ad71a033b3fd107465a8621eaf7c77b28">ERF::ParameterSanityChecks</a></div><div class="ttdeci">void ParameterSanityChecks()</div><div class="ttdef"><b>Definition:</b> ERF.cpp:1675</div></div>
 <div class="ttc" id="aclassERF_html_adb272adf862040a2f1a6226c57c35627"><div class="ttname"><a href="classERF.html#adb272adf862040a2f1a6226c57c35627">ERF::m_expand_plotvars_to_unif_rr</a></div><div class="ttdeci">bool m_expand_plotvars_to_unif_rr</div><div class="ttdef"><b>Definition:</b> ERF.H:942</div></div>
 <div class="ttc" id="aclassERF_html_adcd9f23975ffa605247b41d391c2a2f0"><div class="ttname"><a href="classERF.html#adcd9f23975ffa605247b41d391c2a2f0">ERF::num_boxes_at_level</a></div><div class="ttdeci">amrex::Vector&lt; int &gt; num_boxes_at_level</div><div class="ttdef"><b>Definition:</b> ERF.H:717</div></div>
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@@ -14273,38 +14288,38 @@ <h2 class="memtitle"><span class="permalink"><a href="#a691172d44ab3e8b4d6fb18c0
         </tr>
       </table>
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-<div class="fragment"><div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;{</div>
-<div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;    <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> == MeshType::VariableDz)</div>
-<div class="line"><a name="l00547"></a><span class="lineno">  547</span>&#160;    {</div>
-<div class="line"><a name="l00548"></a><span class="lineno">  548</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00549"></a><span class="lineno">  549</span>&#160;        <span class="comment">// First interpolate from coarser level</span></div>
-<div class="line"><a name="l00550"></a><span class="lineno">  550</span>&#160;        <span class="comment">// NOTE: this interpolater assumes that ALL ghost cells of the coarse MultiFab</span></div>
-<div class="line"><a name="l00551"></a><span class="lineno">  551</span>&#160;        <span class="comment">//       have been pre-filled - this includes ghost cells both inside and outside</span></div>
-<div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;        <span class="comment">//       the domain</span></div>
-<div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;        InterpFromCoarseLevel(*temp_zphys_nd, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;nGrowVect(),</div>
-<div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;                              IntVect(0,0,0), <span class="comment">// do not fill ghost cells outside the domain</span></div>
-<div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;                              *<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev-1], 0, 0, 1,</div>
-<div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;                              geom[lev-1], geom[lev],</div>
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-<div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160;        <span class="comment">//    and also fills values of z_phys_nd outside the domain</span></div>
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+<div class="fragment"><div class="line"><a name="l00543"></a><span class="lineno">  543</span>&#160;{</div>
+<div class="line"><a name="l00544"></a><span class="lineno">  544</span>&#160;    <span class="keywordflow">if</span> (lev &gt; 0 &amp;&amp; <a class="code" href="structSolverChoice.html#a1952672901901b0b3a628f2298dc72c2">SolverChoice::mesh_type</a> == MeshType::VariableDz)</div>
+<div class="line"><a name="l00545"></a><span class="lineno">  545</span>&#160;    {</div>
+<div class="line"><a name="l00546"></a><span class="lineno">  546</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00547"></a><span class="lineno">  547</span>&#160;        <span class="comment">// First interpolate from coarser level</span></div>
+<div class="line"><a name="l00548"></a><span class="lineno">  548</span>&#160;        <span class="comment">// NOTE: this interpolater assumes that ALL ghost cells of the coarse MultiFab</span></div>
+<div class="line"><a name="l00549"></a><span class="lineno">  549</span>&#160;        <span class="comment">//       have been pre-filled - this includes ghost cells both inside and outside</span></div>
+<div class="line"><a name="l00550"></a><span class="lineno">  550</span>&#160;        <span class="comment">//       the domain</span></div>
+<div class="line"><a name="l00551"></a><span class="lineno">  551</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00552"></a><span class="lineno">  552</span>&#160;        InterpFromCoarseLevel(*temp_zphys_nd, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]-&gt;nGrowVect(),</div>
+<div class="line"><a name="l00553"></a><span class="lineno">  553</span>&#160;                              IntVect(0,0,0), <span class="comment">// do not fill ghost cells outside the domain</span></div>
+<div class="line"><a name="l00554"></a><span class="lineno">  554</span>&#160;                              *<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev-1], 0, 0, 1,</div>
+<div class="line"><a name="l00555"></a><span class="lineno">  555</span>&#160;                              geom[lev-1], geom[lev],</div>
+<div class="line"><a name="l00556"></a><span class="lineno">  556</span>&#160;                              refRatio(lev-1), &amp;node_bilinear_interp,</div>
+<div class="line"><a name="l00557"></a><span class="lineno">  557</span>&#160;                              <a class="code" href="classERF.html#a574521986a6e403159f83c8b8123ba90">domain_bcs_type</a>, <a class="code" href="namespaceBCVars.html#a00367571247ba920989360b94c156f4aaaf601346b01655b32acf66d07b856aec">BCVars::cons_bc</a>);</div>
+<div class="line"><a name="l00558"></a><span class="lineno">  558</span>&#160; </div>
+<div class="line"><a name="l00559"></a><span class="lineno">  559</span>&#160;        <span class="comment">// This recomputes the fine values using the bottom terrain at the fine resolution,</span></div>
+<div class="line"><a name="l00560"></a><span class="lineno">  560</span>&#160;        <span class="comment">//    and also fills values of z_phys_nd outside the domain</span></div>
+<div class="line"><a name="l00561"></a><span class="lineno">  561</span>&#160;        <a class="code" href="ERF__TerrainMetrics_8cpp.html#a9addf6b6f85760dd0d43acd9a52fe66c">make_terrain_fitted_coords</a>(lev,geom[lev],*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],<a class="code" href="classERF.html#ace4f0c79f84075dd7a43bd2b0ede1a9b">zlevels_stag</a>[lev],<a class="code" href="classERF.html#ae6df94c25ac21bf6a2e856a9901e3a15">phys_bc_type</a>);</div>
+<div class="line"><a name="l00562"></a><span class="lineno">  562</span>&#160; </div>
+<div class="line"><a name="l00563"></a><span class="lineno">  563</span>&#160;        std::swap(temp_zphys_nd, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]);</div>
 <div class="line"><a name="l00564"></a><span class="lineno">  564</span>&#160; </div>
-<div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;        std::swap(temp_zphys_nd, <a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev]);</div>
+<div class="line"><a name="l00565"></a><span class="lineno">  565</span>&#160;    } <span class="comment">// use_terrain &amp;&amp; lev &gt; 0</span></div>
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-<div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;    } <span class="comment">// use_terrain &amp;&amp; lev &gt; 0</span></div>
-<div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160; </div>
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+<div class="line"><a name="l00567"></a><span class="lineno">  567</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#ab734eb0a5147b93dc6590038b6decc60">terrain_type</a> == TerrainType::ImmersedForcing) {</div>
+<div class="line"><a name="l00568"></a><span class="lineno">  568</span>&#160;        <span class="comment">//</span></div>
+<div class="line"><a name="l00569"></a><span class="lineno">  569</span>&#160;        <span class="comment">// This assumes we have already remade the EBGeometry</span></div>
 <div class="line"><a name="l00570"></a><span class="lineno">  570</span>&#160;        <span class="comment">//</span></div>
-<div class="line"><a name="l00571"></a><span class="lineno">  571</span>&#160;        <span class="comment">// This assumes we have already remade the EBGeometry</span></div>
-<div class="line"><a name="l00572"></a><span class="lineno">  572</span>&#160;        <span class="comment">//</span></div>
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-<div class="line"><a name="l00575"></a><span class="lineno">  575</span>&#160;    }</div>
-<div class="line"><a name="l00576"></a><span class="lineno">  576</span>&#160;}</div>
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+<div class="line"><a name="l00572"></a><span class="lineno">  572</span>&#160;        MultiFab::Subtract(*<a class="code" href="classERF.html#a4a18cc3befd0911ccb011f9bb3b2efc2">terrain_blanking</a>[lev], <a class="code" href="classERF.html#ad024dd413ab20e5d6f69c1f96e5b78a3">EBFactory</a>(lev).getVolFrac(), 0, 0, 1, 0);</div>
+<div class="line"><a name="l00573"></a><span class="lineno">  573</span>&#160;    }</div>
+<div class="line"><a name="l00574"></a><span class="lineno">  574</span>&#160;}</div>
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 Here is the call graph for this function:</div>
 <div class="dyncontent">
@@ -14518,7 +14533,7 @@ <h2 class="memtitle"><span class="permalink"><a href="#aae7a3a76e08e54c618cf79b3
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+<div class="ttc" id="aclassERF_html_a691172d44ab3e8b4d6fb18c068cc1ab4"><div class="ttname"><a href="classERF.html#a691172d44ab3e8b4d6fb18c068cc1ab4">ERF::remake_zphys</a></div><div class="ttdeci">void remake_zphys(int lev, amrex::Real time, std::unique_ptr&lt; amrex::MultiFab &gt; &amp;temp_zphys_nd)</div><div class="ttdef"><b>Definition:</b> ERF_MakeNewArrays.cpp:542</div></div>
 </div><!-- fragment -->
 </div>
 </div>
@@ -14536,30 +14551,30 @@ <h2 class="memtitle"><span class="permalink"><a href="#a530d2ce59e6fd46e9fb00e4d
         </tr>
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-<div class="fragment"><div class="line"><a name="l01235"></a><span class="lineno"> 1235</span>&#160;{</div>
-<div class="line"><a name="l01236"></a><span class="lineno"> 1236</span>&#160;    <span class="comment">// TODO: This could be deleted since ba/dm are not created yet?</span></div>
-<div class="line"><a name="l01237"></a><span class="lineno"> 1237</span>&#160;    <span class="keywordflow">for</span> (<span class="keywordtype">int</span> lev = 0; lev &lt;= finest_level; ++lev)</div>
-<div class="line"><a name="l01238"></a><span class="lineno"> 1238</span>&#160;    {</div>
-<div class="line"><a name="l01239"></a><span class="lineno"> 1239</span>&#160;        <span class="keyword">auto</span>&amp; lev_new = <a class="code" href="classERF.html#a1204ca4dc5d79f5da191ffbe09dfab9b">vars_new</a>[lev];</div>
-<div class="line"><a name="l01240"></a><span class="lineno"> 1240</span>&#160;        <span class="keyword">auto</span>&amp; lev_old = <a class="code" href="classERF.html#af31e928baa970a1507dfb0233b352542">vars_old</a>[lev];</div>
-<div class="line"><a name="l01241"></a><span class="lineno"> 1241</span>&#160;        lev_new[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].setVal(0.); lev_old[<a class="code" href="namespaceVars.html#a161eed9b529c2108b15a09099729c3b9a47abe072e12c61d29cde15a509a0664b">Vars::cons</a>].setVal(0.);</div>
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-<div class="line"><a name="l01246"></a><span class="lineno"> 1246</span>&#160; </div>
-<div class="line"><a name="l01247"></a><span class="lineno"> 1247</span>&#160;<span class="preprocessor">#ifdef ERF_USE_NETCDF</span></div>
-<div class="line"><a name="l01248"></a><span class="lineno"> 1248</span>&#160;    <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a30a0b9e3a037c71580d1feb3b30a8258">restart_type</a> == <span class="stringliteral">&quot;netcdf&quot;</span>) {</div>
-<div class="line"><a name="l01249"></a><span class="lineno"> 1249</span>&#160;       ReadNCCheckpointFile();</div>
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+<div class="line"><a name="l01272"></a><span class="lineno"> 1272</span>&#160; </div>
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 </div>
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+<div class="fragment"><div class="line"><a name="l00381"></a><span class="lineno">  381</span>&#160;{</div>
+<div class="line"><a name="l00382"></a><span class="lineno">  382</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
+<div class="line"><a name="l00383"></a><span class="lineno">  383</span>&#160;    <span class="comment">// Diffusive terms</span></div>
 <div class="line"><a name="l00384"></a><span class="lineno">  384</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
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-<div class="line"><a name="l00386"></a><span class="lineno">  386</span>&#160;    <span class="comment">// ********************************************************************************************</span></div>
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-<div class="line"><a name="l00388"></a><span class="lineno">  388</span>&#160;    <span class="keywordtype">bool</span> l_use_kturb   = ( (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#aa53b017d79e0067923180a0aa59367b4">turbChoice</a>[lev].les_type   != LESType::None)  ||</div>
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-<div class="line"><a name="l00404"></a><span class="lineno">  404</span>&#160;        <span class="comment">//       cover the entire vertical extent of the domain at this level</span></div>
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+<div class="line"><a name="l00398"></a><span class="lineno">  398</span>&#160; </div>
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+<div class="line"><a name="l00401"></a><span class="lineno">  401</span>&#160;        <span class="comment">// NOTE: We require ghost cells in the vertical when allowing grids that don&#39;t</span></div>
+<div class="line"><a name="l00402"></a><span class="lineno">  402</span>&#160;        <span class="comment">//       cover the entire vertical extent of the domain at this level</span></div>
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+<div class="line"><a name="l00418"></a><span class="lineno">  418</span>&#160;        }</div>
+<div class="line"><a name="l00419"></a><span class="lineno">  419</span>&#160;        <a class="code" href="classERF.html#a25174b4ae6cfcac8f7d183ce5c9fe67b">SFS_hfx1_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(1,0,0)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00420"></a><span class="lineno">  420</span>&#160;        <a class="code" href="classERF.html#acb607b2e675b45fdcabc09b640ce5ae2">SFS_hfx2_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(0,1,0)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00421"></a><span class="lineno">  421</span>&#160;        <a class="code" href="classERF.html#a1a2e3faf5dd90ad2f9ded28b486f3b46">SFS_hfx3_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(0,0,1)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00422"></a><span class="lineno">  422</span>&#160;        <a class="code" href="classERF.html#a6e1ad417e3bd062468d74830b65911fb">SFS_diss_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( ba  , dm, 1, IntVect(1,1,1) );</div>
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+<div class="line"><a name="l00424"></a><span class="lineno">  424</span>&#160;        <a class="code" href="classERF.html#acb607b2e675b45fdcabc09b640ce5ae2">SFS_hfx2_lev</a>[lev]-&gt;setVal(0.);</div>
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+<div class="line"><a name="l00429"></a><span class="lineno">  429</span>&#160;            <a class="code" href="classERF.html#a3ea10ef7383e594b6ee5e7a9ad67607b">SFS_q2fx3_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(0,0,1)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00430"></a><span class="lineno">  430</span>&#160;            <a class="code" href="classERF.html#a101ceb89b1a249efeea3f4e8052bc8c0">SFS_q1fx3_lev</a>[lev]-&gt;setVal(0.0);</div>
+<div class="line"><a name="l00431"></a><span class="lineno">  431</span>&#160;            <a class="code" href="classERF.html#a3ea10ef7383e594b6ee5e7a9ad67607b">SFS_q2fx3_lev</a>[lev]-&gt;setVal(0.0);</div>
+<div class="line"><a name="l00432"></a><span class="lineno">  432</span>&#160;            <span class="keywordflow">if</span> (<a class="code" href="classERF.html#a32dd48049e8acbe95decdd4b01b782c4">solverChoice</a>.<a class="code" href="structSolverChoice.html#af3dab90d6c6d356aa2f35c3dbe151411">use_rotate_most</a>) {</div>
+<div class="line"><a name="l00433"></a><span class="lineno">  433</span>&#160;                <a class="code" href="classERF.html#ae0316d5ae567a2da8439d204bace12ce">SFS_q1fx1_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(1,0,0)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00434"></a><span class="lineno">  434</span>&#160;                <a class="code" href="classERF.html#a53fab1172ec3f01356355f8cda0919fe">SFS_q1fx2_lev</a>[lev] = std::make_unique&lt;MultiFab&gt;( convert(ba,IntVect(0,1,0)), dm, 1, IntVect(1,1,1) );</div>
+<div class="line"><a name="l00435"></a><span class="lineno">  435</span>&#160;                <a class="code" href="classERF.html#ae0316d5ae567a2da8439d204bace12ce">SFS_q1fx1_lev</a>[lev]-&gt;setVal(0.0);</div>
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@@ -16533,14 +16548,14 @@ <h2 class="memtitle"><span class="permalink"><a href="#a7dba7f9e6bd3f6898fac9ac2
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-<div class="line"><a name="l00587"></a><span class="lineno">  587</span>&#160;}</div>
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+<div class="line"><a name="l00583"></a><span class="lineno">  583</span>&#160;        <a class="code" href="ERF__TerrainMetrics_8cpp.html#acc28d890df44cf0082a848c057042178">make_zcc</a>(geom[lev],*<a class="code" href="classERF.html#a93e63e5af35efa564fd4195e8703f84c">z_phys_nd</a>[lev],*<a class="code" href="classERF.html#a31be0f1ae705c52c8ccc520369013284">z_phys_cc</a>[lev]);</div>
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@@ -18073,47 +18088,47 @@ <h2 class="memtitle"><span class="permalink"><a href="#af2e4de4eaa0f93149c1aefd5
         </tr>
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-<div class="fragment"><div class="line"><a name="l01954"></a><span class="lineno"> 1954</span>&#160;{</div>
-<div class="line"><a name="l01955"></a><span class="lineno"> 1955</span>&#160;    <span class="keywordtype">bool</span> write_now = <span class="keyword">false</span>;</div>
-<div class="line"><a name="l01956"></a><span class="lineno"> 1956</span>&#160; </div>
-<div class="line"><a name="l01957"></a><span class="lineno"> 1957</span>&#160;    <span class="keywordflow">if</span> ( plot_int &gt; 0 &amp;&amp; (nstep % plot_int == 0) ) {</div>
-<div class="line"><a name="l01958"></a><span class="lineno"> 1958</span>&#160;        write_now = <span class="keyword">true</span>;</div>
-<div class="line"><a name="l01959"></a><span class="lineno"> 1959</span>&#160; </div>
-<div class="line"><a name="l01960"></a><span class="lineno"> 1960</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (plot_per &gt; 0.0) {</div>
-<div class="line"><a name="l01961"></a><span class="lineno"> 1961</span>&#160; </div>
-<div class="line"><a name="l01962"></a><span class="lineno"> 1962</span>&#160;        <span class="comment">// Check to see if we&#39;ve crossed a plot_per interval by comparing</span></div>
-<div class="line"><a name="l01963"></a><span class="lineno"> 1963</span>&#160;        <span class="comment">// the number of intervals that have elapsed for both the current</span></div>
-<div class="line"><a name="l01964"></a><span class="lineno"> 1964</span>&#160;        <span class="comment">// time and the time at the beginning of this timestep.</span></div>
-<div class="line"><a name="l01965"></a><span class="lineno"> 1965</span>&#160; </div>
-<div class="line"><a name="l01966"></a><span class="lineno"> 1966</span>&#160;        <span class="keyword">const</span> Real eps = std::numeric_limits&lt;Real&gt;::epsilon() * Real(10.0) * std::abs(cur_time);</div>
-<div class="line"><a name="l01967"></a><span class="lineno"> 1967</span>&#160; </div>
-<div class="line"><a name="l01968"></a><span class="lineno"> 1968</span>&#160;        <span class="keywordtype">int</span> num_per_old = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(std::floor((cur_time-eps-dt_lev) / plot_per));</div>
-<div class="line"><a name="l01969"></a><span class="lineno"> 1969</span>&#160;        <span class="keywordtype">int</span> num_per_new = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(std::floor((cur_time-eps       ) / plot_per));</div>
-<div class="line"><a name="l01970"></a><span class="lineno"> 1970</span>&#160; </div>
-<div class="line"><a name="l01971"></a><span class="lineno"> 1971</span>&#160;        <span class="comment">// Before using these, however, we must test for the case where we&#39;re</span></div>
-<div class="line"><a name="l01972"></a><span class="lineno"> 1972</span>&#160;        <span class="comment">// within machine epsilon of the next interval. In that case, increment</span></div>
-<div class="line"><a name="l01973"></a><span class="lineno"> 1973</span>&#160;        <span class="comment">// the counter, because we have indeed reached the next plot_per interval</span></div>
-<div class="line"><a name="l01974"></a><span class="lineno"> 1974</span>&#160;        <span class="comment">// at this point.</span></div>
-<div class="line"><a name="l01975"></a><span class="lineno"> 1975</span>&#160; </div>
-<div class="line"><a name="l01976"></a><span class="lineno"> 1976</span>&#160;        <span class="keyword">const</span> Real next_plot_time = (num_per_old + 1) * plot_per;</div>
-<div class="line"><a name="l01977"></a><span class="lineno"> 1977</span>&#160; </div>
-<div class="line"><a name="l01978"></a><span class="lineno"> 1978</span>&#160;        <span class="keywordflow">if</span> ((num_per_new == num_per_old) &amp;&amp; std::abs(cur_time - next_plot_time) &lt;= eps)</div>
-<div class="line"><a name="l01979"></a><span class="lineno"> 1979</span>&#160;        {</div>
-<div class="line"><a name="l01980"></a><span class="lineno"> 1980</span>&#160;            num_per_new += 1;</div>
-<div class="line"><a name="l01981"></a><span class="lineno"> 1981</span>&#160;        }</div>
+<div class="fragment"><div class="line"><a name="l01971"></a><span class="lineno"> 1971</span>&#160;{</div>
+<div class="line"><a name="l01972"></a><span class="lineno"> 1972</span>&#160;    <span class="keywordtype">bool</span> write_now = <span class="keyword">false</span>;</div>
+<div class="line"><a name="l01973"></a><span class="lineno"> 1973</span>&#160; </div>
+<div class="line"><a name="l01974"></a><span class="lineno"> 1974</span>&#160;    <span class="keywordflow">if</span> ( plot_int &gt; 0 &amp;&amp; (nstep % plot_int == 0) ) {</div>
+<div class="line"><a name="l01975"></a><span class="lineno"> 1975</span>&#160;        write_now = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l01976"></a><span class="lineno"> 1976</span>&#160; </div>
+<div class="line"><a name="l01977"></a><span class="lineno"> 1977</span>&#160;    } <span class="keywordflow">else</span> <span class="keywordflow">if</span> (plot_per &gt; 0.0) {</div>
+<div class="line"><a name="l01978"></a><span class="lineno"> 1978</span>&#160; </div>
+<div class="line"><a name="l01979"></a><span class="lineno"> 1979</span>&#160;        <span class="comment">// Check to see if we&#39;ve crossed a plot_per interval by comparing</span></div>
+<div class="line"><a name="l01980"></a><span class="lineno"> 1980</span>&#160;        <span class="comment">// the number of intervals that have elapsed for both the current</span></div>
+<div class="line"><a name="l01981"></a><span class="lineno"> 1981</span>&#160;        <span class="comment">// time and the time at the beginning of this timestep.</span></div>
 <div class="line"><a name="l01982"></a><span class="lineno"> 1982</span>&#160; </div>
-<div class="line"><a name="l01983"></a><span class="lineno"> 1983</span>&#160;        <span class="comment">// Similarly, we have to account for the case where the old time is within</span></div>
-<div class="line"><a name="l01984"></a><span class="lineno"> 1984</span>&#160;        <span class="comment">// machine epsilon of the beginning of this interval, so that we don&#39;t double</span></div>
-<div class="line"><a name="l01985"></a><span class="lineno"> 1985</span>&#160;        <span class="comment">// count that time threshold -- we already plotted at that time on the last timestep.</span></div>
-<div class="line"><a name="l01986"></a><span class="lineno"> 1986</span>&#160; </div>
-<div class="line"><a name="l01987"></a><span class="lineno"> 1987</span>&#160;        <span class="keywordflow">if</span> ((num_per_new != num_per_old) &amp;&amp; std::abs((cur_time - dt_lev) - next_plot_time) &lt;= eps)</div>
-<div class="line"><a name="l01988"></a><span class="lineno"> 1988</span>&#160;            num_per_old += 1;</div>
-<div class="line"><a name="l01989"></a><span class="lineno"> 1989</span>&#160; </div>
-<div class="line"><a name="l01990"></a><span class="lineno"> 1990</span>&#160;        <span class="keywordflow">if</span> (num_per_old != num_per_new)</div>
-<div class="line"><a name="l01991"></a><span class="lineno"> 1991</span>&#160;            write_now = <span class="keyword">true</span>;</div>
-<div class="line"><a name="l01992"></a><span class="lineno"> 1992</span>&#160;    }</div>
-<div class="line"><a name="l01993"></a><span class="lineno"> 1993</span>&#160;    <span class="keywordflow">return</span> write_now;</div>
-<div class="line"><a name="l01994"></a><span class="lineno"> 1994</span>&#160;}</div>
+<div class="line"><a name="l01983"></a><span class="lineno"> 1983</span>&#160;        <span class="keyword">const</span> Real eps = std::numeric_limits&lt;Real&gt;::epsilon() * Real(10.0) * std::abs(cur_time);</div>
+<div class="line"><a name="l01984"></a><span class="lineno"> 1984</span>&#160; </div>
+<div class="line"><a name="l01985"></a><span class="lineno"> 1985</span>&#160;        <span class="keywordtype">int</span> num_per_old = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(std::floor((cur_time-eps-dt_lev) / plot_per));</div>
+<div class="line"><a name="l01986"></a><span class="lineno"> 1986</span>&#160;        <span class="keywordtype">int</span> num_per_new = <span class="keyword">static_cast&lt;</span><span class="keywordtype">int</span><span class="keyword">&gt;</span>(std::floor((cur_time-eps       ) / plot_per));</div>
+<div class="line"><a name="l01987"></a><span class="lineno"> 1987</span>&#160; </div>
+<div class="line"><a name="l01988"></a><span class="lineno"> 1988</span>&#160;        <span class="comment">// Before using these, however, we must test for the case where we&#39;re</span></div>
+<div class="line"><a name="l01989"></a><span class="lineno"> 1989</span>&#160;        <span class="comment">// within machine epsilon of the next interval. In that case, increment</span></div>
+<div class="line"><a name="l01990"></a><span class="lineno"> 1990</span>&#160;        <span class="comment">// the counter, because we have indeed reached the next plot_per interval</span></div>
+<div class="line"><a name="l01991"></a><span class="lineno"> 1991</span>&#160;        <span class="comment">// at this point.</span></div>
+<div class="line"><a name="l01992"></a><span class="lineno"> 1992</span>&#160; </div>
+<div class="line"><a name="l01993"></a><span class="lineno"> 1993</span>&#160;        <span class="keyword">const</span> Real next_plot_time = (num_per_old + 1) * plot_per;</div>
+<div class="line"><a name="l01994"></a><span class="lineno"> 1994</span>&#160; </div>
+<div class="line"><a name="l01995"></a><span class="lineno"> 1995</span>&#160;        <span class="keywordflow">if</span> ((num_per_new == num_per_old) &amp;&amp; std::abs(cur_time - next_plot_time) &lt;= eps)</div>
+<div class="line"><a name="l01996"></a><span class="lineno"> 1996</span>&#160;        {</div>
+<div class="line"><a name="l01997"></a><span class="lineno"> 1997</span>&#160;            num_per_new += 1;</div>
+<div class="line"><a name="l01998"></a><span class="lineno"> 1998</span>&#160;        }</div>
+<div class="line"><a name="l01999"></a><span class="lineno"> 1999</span>&#160; </div>
+<div class="line"><a name="l02000"></a><span class="lineno"> 2000</span>&#160;        <span class="comment">// Similarly, we have to account for the case where the old time is within</span></div>
+<div class="line"><a name="l02001"></a><span class="lineno"> 2001</span>&#160;        <span class="comment">// machine epsilon of the beginning of this interval, so that we don&#39;t double</span></div>
+<div class="line"><a name="l02002"></a><span class="lineno"> 2002</span>&#160;        <span class="comment">// count that time threshold -- we already plotted at that time on the last timestep.</span></div>
+<div class="line"><a name="l02003"></a><span class="lineno"> 2003</span>&#160; </div>
+<div class="line"><a name="l02004"></a><span class="lineno"> 2004</span>&#160;        <span class="keywordflow">if</span> ((num_per_new != num_per_old) &amp;&amp; std::abs((cur_time - dt_lev) - next_plot_time) &lt;= eps)</div>
+<div class="line"><a name="l02005"></a><span class="lineno"> 2005</span>&#160;            num_per_old += 1;</div>
+<div class="line"><a name="l02006"></a><span class="lineno"> 2006</span>&#160; </div>
+<div class="line"><a name="l02007"></a><span class="lineno"> 2007</span>&#160;        <span class="keywordflow">if</span> (num_per_old != num_per_new)</div>
+<div class="line"><a name="l02008"></a><span class="lineno"> 2008</span>&#160;            write_now = <span class="keyword">true</span>;</div>
+<div class="line"><a name="l02009"></a><span class="lineno"> 2009</span>&#160;    }</div>
+<div class="line"><a name="l02010"></a><span class="lineno"> 2010</span>&#160;    <span class="keywordflow">return</span> write_now;</div>
+<div class="line"><a name="l02011"></a><span class="lineno"> 2011</span>&#160;}</div>
 </div><!-- fragment -->
 </div>
 </div>