From 89e07ba37ff94078c1aa5ae2e532a9b57d3476e6 Mon Sep 17 00:00:00 2001 From: Oleksandr Zhynzher Date: Thu, 28 Sep 2023 18:51:19 +0300 Subject: [PATCH] parrt1 --- .eslintrc | 16 +- package-lock.json | 5759 +++++++++++------ package.json | 16 +- src/config/config.js | 11 +- src/engine/Volume.js | 2 +- src/engine/VolumeSet.js | 12 +- src/engine/lib/MRIViewer.ts | 25 + src/engine/lib/config/volume.config.ts | 3 + src/engine/lib/core/readers/MRIFileReader.ts | 28 + .../readers/abstract/AbstractMRIReader.ts | 83 + src/engine/lib/core/readers/index.ts | 3 + .../lib/core/readers/local/ArchiveReader.ts | 56 + .../readers/local/MRIFileReaderFactory.ts | 44 + .../lib/core/readers/local/MultiFileReader.ts | 144 + .../core/readers/local/SingleFileReader.ts | 84 + .../lib/core/readers/url/MRIUrlReader.ts | 41 + src/engine/lib/enums/events.enum.ts | 7 + src/engine/lib/enums/index.ts | 1 + src/engine/lib/index.d.ts | 0 src/engine/lib/interfaces/index.ts | 3 + src/engine/lib/services/EventsService.ts | 28 + .../lib/services/LocalStorageService.ts | 38 + src/engine/lib/services/StoreService.ts | 96 + src/engine/lib/services/index.ts | 2 + src/engine/loaders/FileLoader.js | 204 +- src/engine/loaders/FileReader.js | 904 --- src/engine/loaders/LoaderHdr.js | 3 +- src/engine/loaders/LoaderNifti.js | 13 +- src/index.js | 10 +- src/react-app-env.d.ts | 1 + src/store/index.js | 4 + src/ui/Button/Button.module.css | 20 + src/ui/FileReaders/DragAndDrop.module.css | 13 + src/ui/FileReaders/DragAndDropComponent.jsx | 52 + src/ui/FileReaders/OpenDemoComponent.jsx | 29 + src/ui/FileReaders/OpenFromDeviceButton.jsx | 40 + .../FileReaders/OpenFromDeviceComponent.jsx | 58 + src/ui/FileReaders/OpenFromURLComponent.jsx | 28 + src/ui/FileReaders/index.js | 5 + src/ui/Header/Header.jsx | 14 +- src/ui/Header/Header.module.css | 3 + src/ui/Main.jsx | 2 +- src/ui/Modals/ModalSelectFile.jsx | 26 + src/ui/Modals/ModalUrl.jsx | 54 +- src/ui/Modals/Modals.module.css | 39 +- src/ui/Modals/UiModalWinCW.jsx | 6 +- src/ui/OpenFile/UiOpenMenu.jsx | 981 --- src/ui/OpenFile/UiOpenMenu.module.css | 20 - .../SmartContainer/SmartContainer.jsx | 111 +- .../SmartContainer/SmartContainer.module.css | 10 - tsconfig.json | 29 + 51 files changed, 4882 insertions(+), 4299 deletions(-) create mode 100644 src/engine/lib/MRIViewer.ts create mode 100644 src/engine/lib/config/volume.config.ts create mode 100644 src/engine/lib/core/readers/MRIFileReader.ts create mode 100644 src/engine/lib/core/readers/abstract/AbstractMRIReader.ts create mode 100644 src/engine/lib/core/readers/index.ts create mode 100644 src/engine/lib/core/readers/local/ArchiveReader.ts create mode 100644 src/engine/lib/core/readers/local/MRIFileReaderFactory.ts create mode 100644 src/engine/lib/core/readers/local/MultiFileReader.ts create mode 100644 src/engine/lib/core/readers/local/SingleFileReader.ts create mode 100644 src/engine/lib/core/readers/url/MRIUrlReader.ts create mode 100644 src/engine/lib/enums/events.enum.ts create mode 100644 src/engine/lib/enums/index.ts create mode 100644 src/engine/lib/index.d.ts create mode 100644 src/engine/lib/interfaces/index.ts create mode 100644 src/engine/lib/services/EventsService.ts create mode 100644 src/engine/lib/services/LocalStorageService.ts create mode 100644 src/engine/lib/services/StoreService.ts create mode 100644 src/engine/lib/services/index.ts delete mode 100644 src/engine/loaders/FileReader.js create mode 100644 src/react-app-env.d.ts create mode 100644 src/store/index.js create mode 100644 src/ui/FileReaders/DragAndDrop.module.css create mode 100644 src/ui/FileReaders/DragAndDropComponent.jsx create mode 100644 src/ui/FileReaders/OpenDemoComponent.jsx create mode 100644 src/ui/FileReaders/OpenFromDeviceButton.jsx create mode 100644 src/ui/FileReaders/OpenFromDeviceComponent.jsx create mode 100644 src/ui/FileReaders/OpenFromURLComponent.jsx create mode 100644 src/ui/FileReaders/index.js create mode 100644 src/ui/Header/Header.module.css create mode 100644 src/ui/Modals/ModalSelectFile.jsx delete mode 100644 src/ui/OpenFile/UiOpenMenu.jsx delete mode 100644 src/ui/OpenFile/UiOpenMenu.module.css create mode 100644 tsconfig.json diff --git a/.eslintrc b/.eslintrc index 56b2c036..bfa55656 100644 --- a/.eslintrc +++ b/.eslintrc @@ -6,9 +6,9 @@ "es6": true }, "root": true, - "parser": "babel-eslint", - "plugins": ["react", "prettier"], - "extends": ["eslint:recommended", "plugin:react/recommended", "prettier"], + "parser": "@typescript-eslint/parser", + "plugins": ["react", "prettier", "@typescript-eslint"], + "extends": ["eslint:recommended", "plugin:react/recommended", "prettier", "plugin:@typescript-eslint/recommended"], "settings": { "react": { "createClass": "createReactClass", @@ -28,6 +28,7 @@ "react/no-string-refs": "off", "react/jsx-no-undef": "off", "react/jsx-key": "off", + "react/react-in-jsx-scope": "off", "no-case-declarations": "off", "react/no-unescaped-entities": "off", "linebreak-style": "off", @@ -53,7 +54,7 @@ "no-multi-spaces": "off", "no-prototype-builtins": "off", "wrap-iife": ["error", "any"], - "no-use-before-define": ["error", "nofunc"], + "no-use-before-define": "off", "object-property-newline": "off", "no-restricted-syntax": "off", "no-else-return": "off", @@ -66,8 +67,11 @@ "no-plusplus": "off", "no-multi-assign": "off", "react/no-unknown-property": "off", - "lines-between-class-members": ["error", "always"], + "lines-between-class-members": ["off"], "no-debugger": "warn", - "prettier/prettier": ["error"] + "prettier/prettier": ["error"], + "@typescript-eslint/no-explicit-any": "off", + "@typescript-eslint/ban-types": "off", + "@typescript-eslint/explicit-module-boundary-types": "off" } } diff --git a/package-lock.json b/package-lock.json index d9ed9bf2..32ee928c 100644 --- a/package-lock.json +++ b/package-lock.json @@ -16,8 +16,7 @@ "@tensorflow/tfjs": "^3.6.0", "classnames": "^2.3.1", "daikon": "^1.2.42", - "eslint": "^7.27.0", - "filereader-stream": "^2.0.0", + "jszip": "^3.10.1", "react": "^17.0.2", "react-dnd": "^14.0.2", "react-dnd-html5-backend": "^14.0.0", @@ -28,8 +27,7 @@ "react-scripts": "4.0.3", "redux": "4.1.0", "seedrandom": "^2.4.4", - "three": "0.101.1", - "zlib": "1.x.x" + "three": "0.101.1" }, "devDependencies": { "@babel/core": "7.14.3", @@ -37,18 +35,32 @@ "@testing-library/react": "^12.1.0", "@testing-library/react-hooks": "^7.0.2", "@testing-library/user-event": "^13.2.1", + "@types/react": "^18.2.14", + "@types/react-dom": "^18.2.6", + "@typescript-eslint/eslint-plugin": "^6.7.2", + "@typescript-eslint/parser": "^6.7.2", + "eslint": "^7.27.0", "eslint-config-prettier": "^8.3.0", "eslint-plugin-prettier": "^4.0.0", "eslint-plugin-react": "7.x.x", "husky": "^7.0.0", "lint-staged": "^11.0.0", - "prettier": "^2.4.1" + "prettier": "^2.4.1", + "typescript": "^4.9.5" + } + }, + "node_modules/@aashutoshrathi/word-wrap": { + "version": "1.2.6", + "resolved": "https://registry.npmjs.org/@aashutoshrathi/word-wrap/-/word-wrap-1.2.6.tgz", + "integrity": "sha512-1Yjs2SvM8TflER/OD3cOjhWWOZb58A2t7wpE2S9XfBYTiIl+XFhQG2bjy4Pu1I+EAlCNUzRDYDdFwFYUKvXcIA==", + "engines": { + "node": ">=0.10.0" } }, "node_modules/@adobe/css-tools": { - "version": "4.2.0", - "resolved": "https://registry.npmjs.org/@adobe/css-tools/-/css-tools-4.2.0.tgz", - "integrity": "sha512-E09FiIft46CmH5Qnjb0wsW54/YQd69LsxeKUOWawmws1XWvyFGURnAChH0mlr7YPFR1ofwvUQfcL0J3lMxXqPA==", + "version": "4.3.1", + "resolved": "https://registry.npmjs.org/@adobe/css-tools/-/css-tools-4.3.1.tgz", + "integrity": "sha512-/62yikz7NLScCGAAST5SHdnjaDJQBDq0M2muyRTpf2VQhw6StBg2ALiu73zSJQ4fMVLA+0uBhBHAle7Wg+2kSg==", "dev": true }, "node_modules/@ampproject/remapping": { @@ -64,20 +76,21 @@ } }, "node_modules/@babel/code-frame": { - "version": "7.22.5", - 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Please use @babel/plugin-transform-private-methods instead.", "dependencies": { "@babel/helper-create-class-features-plugin": "^7.18.6", "@babel/helper-plugin-utils": "^7.18.6" @@ -585,21 +597,6 @@ "@babel/core": "^7.0.0-0" } }, - "node_modules/@babel/plugin-proposal-unicode-property-regex": { - "version": "7.18.6", - "resolved": "https://registry.npmjs.org/@babel/plugin-proposal-unicode-property-regex/-/plugin-proposal-unicode-property-regex-7.18.6.tgz", - "integrity": "sha512-2BShG/d5yoZyXZfVePH91urL5wTG6ASZU9M4o03lKK8u8UW1y08OMttBSOADTcJrnPMpvDXRG3G8fyLh4ovs8w==", - "dependencies": { - "@babel/helper-create-regexp-features-plugin": "^7.18.6", - "@babel/helper-plugin-utils": "^7.18.6" - }, - "engines": { - "node": ">=4" - }, - "peerDependencies": { - "@babel/core": "^7.0.0-0" - } - }, "node_modules/@babel/plugin-syntax-async-generators": { "version": "7.8.4", "resolved": "https://registry.npmjs.org/@babel/plugin-syntax-async-generators/-/plugin-syntax-async-generators-7.8.4.tgz", @@ 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"sha512-BN22B5eaMMI9UMtjrGd5g5eCYPpCPDUy0FJXbYsaT5zYxjFOckS53SQDE3pWkVoWpHXVb3BrYcEN4Twa55B5cA==" }, "workbox-background-sync": { "version": "5.1.4", @@ -45900,11 +47364,6 @@ "version": "0.1.0", "resolved": "https://registry.npmjs.org/yocto-queue/-/yocto-queue-0.1.0.tgz", "integrity": "sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q==" - }, - "zlib": { - "version": "1.0.5", - "resolved": "https://registry.npmjs.org/zlib/-/zlib-1.0.5.tgz", - "integrity": "sha512-40fpE2II+Cd3k8HWTWONfeKE2jL+P42iWJ1zzps5W51qcTsOUKM5Q5m2PFb0CLxlmFAaUuUdJGc3OfZy947v0w==" } } } diff --git a/package.json b/package.json index 2790db08..6a6bcc6f 100644 --- a/package.json +++ b/package.json @@ -23,7 +23,7 @@ "build": "react-scripts build", "test": "react-scripts test --detectOpenHandles", "debugtest": "DEBUG=true react-scripts test", - "lint": "eslint src/**/*.js", + "lint": "eslint \"src/**/*.{js,jsx,ts,tsx}\"", "format": "prettier --write \"src/**/*.{js,jsx,html,css}\"", "docker": "npm run build && docker run --name mri-viewer -v ./build:/usr/share/nginx/html:ro -d -p 8080:80 nginx", "prepare": "husky install" @@ -36,8 +36,7 @@ "@tensorflow/tfjs": "^3.6.0", "classnames": "^2.3.1", "daikon": "^1.2.42", - "eslint": "^7.27.0", - "filereader-stream": "^2.0.0", + "jszip": "^3.10.1", "react": "^17.0.2", "react-dnd": "^14.0.2", "react-dnd-html5-backend": "^14.0.0", @@ -48,8 +47,7 @@ "react-scripts": "4.0.3", "redux": "4.1.0", "seedrandom": "^2.4.4", - "three": "0.101.1", - "zlib": "1.x.x" + "three": "0.101.1" }, "devDependencies": { "@babel/core": "7.14.3", @@ -57,12 +55,18 @@ "@testing-library/react": "^12.1.0", "@testing-library/react-hooks": "^7.0.2", "@testing-library/user-event": "^13.2.1", + "@types/react": "^18.2.14", + "@types/react-dom": "^18.2.6", + "@typescript-eslint/eslint-plugin": "^6.7.2", + "@typescript-eslint/parser": "^6.7.2", + "eslint": "^7.27.0", "eslint-config-prettier": "^8.3.0", "eslint-plugin-prettier": "^4.0.0", "eslint-plugin-react": "7.x.x", "husky": "^7.0.0", "lint-staged": "^11.0.0", - "prettier": "^2.4.1" + "prettier": "^2.4.1", + "typescript": "^4.9.5" }, "jest": { "resetMocks": false, diff --git a/src/config/config.js b/src/config/config.js index 3c6f3a74..453acb8c 100644 --- a/src/config/config.js +++ b/src/config/config.js @@ -6,7 +6,16 @@ const config = { // special demo dialog file locations - demoUrls: [], + demoUrls: [ + 'https://daentjnvnffrh.cloudfront.net/demo/01_lungs/20101108.ktx', + 'https://daentjnvnffrh.cloudfront.net/demo/02_brain_set/brain256.ktx', + 'https://daentjnvnffrh.cloudfront.net/demo/03_grandmother_gm3/gm3_512_512_165.nii', + 'https://daentjnvnffrh.cloudfront.net/demo/04_woman_pelvis/file_list.txt', + 'https://daentjnvnffrh.cloudfront.net/demo/05_lungs_00cba/file_list.txt', + 'https://daentjnvnffrh.cloudfront.net/demo/06_ct_256/ct_256_256_256.ktx', + 'https://daentjnvnffrh.cloudfront.net/demo/07_lungs_256/lungs_256_256_256.ktx', + 'https://daentjnvnffrh.cloudfront.net/demo/08_brain_with_roi/set_intn.hdr', + ], googleCloudDemoActivce: false, arrMenuGoogle: [ diff --git a/src/engine/Volume.js b/src/engine/Volume.js index d9c6dcea..3758ea46 100644 --- a/src/engine/Volume.js +++ b/src/engine/Volume.js @@ -172,7 +172,7 @@ class Volume extends React.Component { // do nothing. But we need to implement render() to run Volume tests render() { - return

>

; + return

; } } // end class Volume diff --git a/src/engine/VolumeSet.js b/src/engine/VolumeSet.js index 30b0e1a2..3c7cafea 100644 --- a/src/engine/VolumeSet.js +++ b/src/engine/VolumeSet.js @@ -32,11 +32,8 @@ import LoaderHdr from './loaders/LoaderHdr'; * See Volume class as an element of volume set */ class VolumeSet extends React.Component { - /** - * @param {object} props - props from up level object - */ - constructor(props) { - super(props); + constructor() { + super(); /** nuber of volumes in set */ this.m_numVolumes = 0; /** volumes array. see more details in class Volume */ @@ -101,7 +98,7 @@ class VolumeSet extends React.Component { // do nothing. But we need to implement render() to run Volume tests render() { - return

>

; + return

; } // ******************************************** @@ -150,9 +147,12 @@ class VolumeSet extends React.Component { } readFromNifti(arrBuf, callbackProgress, callbackComplete) { + console.log('I HERE IN READ!'); const loader = new LoaderNifti(); const vol = this.getVolume(0); + console.log('vol = ', vol); const ret = loader.readFromBuffer(vol, arrBuf, callbackProgress, callbackComplete); + console.log('ret = ', ret); return ret; } diff --git a/src/engine/lib/MRIViewer.ts b/src/engine/lib/MRIViewer.ts new file mode 100644 index 00000000..9c72d18c --- /dev/null +++ b/src/engine/lib/MRIViewer.ts @@ -0,0 +1,25 @@ +import { MRIFileReader, mriFileReader } from './core/readers'; +import { MRIEventsService } from './services'; +import mriEventsService from './services/EventsService'; + +export class MRIViwer { + public fileReader: MRIFileReader; + public events: MRIEventsService; + + constructor() { + this.events = mriEventsService; + this.fileReader = mriFileReader; + } + + read(data: File[] | string): void { + console.log('data = ', data); + + this.fileReader.read(data); + } +} + +// Create the singleton instance and freeze it +const w3MriViwer = new MRIViwer(); +Object.freeze(w3MriViwer); + +export default w3MriViwer; diff --git a/src/engine/lib/config/volume.config.ts b/src/engine/lib/config/volume.config.ts new file mode 100644 index 00000000..01a40b41 --- /dev/null +++ b/src/engine/lib/config/volume.config.ts @@ -0,0 +1,3 @@ +export const volumeConfig: any = { + setTextureSize4X: true, +}; diff --git a/src/engine/lib/core/readers/MRIFileReader.ts b/src/engine/lib/core/readers/MRIFileReader.ts new file mode 100644 index 00000000..0483d4ca --- /dev/null +++ b/src/engine/lib/core/readers/MRIFileReader.ts @@ -0,0 +1,28 @@ +import { MRIUrlReader } from './url/MRIUrlReader'; +import { MRIFileReaderFactory } from './local/MRIFileReaderFactory'; + +export class MRIFileReader { + private localFileReader: MRIFileReaderFactory; + private urlFileReader: MRIUrlReader; + + constructor() { + this.localFileReader = new MRIFileReaderFactory(); + this.urlFileReader = new MRIUrlReader(); + } + + read(data: File[] | string): void { + if (data && data.length && data[0] instanceof File) { + this.localFileReader.read(data as File[]); + } else if (typeof data === 'string') { + this.urlFileReader.read(data as string); + } else { + throw new Error('Invalid input. Expected a File or URL string.'); + } + } +} + +// Create the singleton instance and freeze it +const mriFileReader = new MRIFileReader(); +Object.freeze(mriFileReader); + +export default mriFileReader; diff --git a/src/engine/lib/core/readers/abstract/AbstractMRIReader.ts b/src/engine/lib/core/readers/abstract/AbstractMRIReader.ts new file mode 100644 index 00000000..6e7aed05 --- /dev/null +++ b/src/engine/lib/core/readers/abstract/AbstractMRIReader.ts @@ -0,0 +1,83 @@ +import LoadResult from '../../../../LoadResult'; +import VolumeSet from '../../../../VolumeSet'; +import LoaderDicom from '../../../../loaders/LoaderDicom'; +import LoaderHdr from '../../../../loaders/LoaderHdr'; +import { volumeConfig } from '../../../config/volume.config'; +import { MriEvents } from '../../../enums'; +import mriEventsService, { MRIEventsService } from '../../../services/EventsService'; +import mriLocalStorageService, { MRILocalStorageService } from '../../../services/LocalStorageService'; +import mriStoreService, { MRIStoreService } from '../../../services/StoreService'; + +export abstract class AbstractMRIReader { + // VolumeData + volumeSet: VolumeSet; + volumeIndex: number = 0; + // FileData + fileName: string; + fileExtension: string; + // File Handlers + loader: LoaderDicom | LoaderHdr | null; + fileReader: FileReader; + // Services + store: MRIStoreService; + events: MRIEventsService; + localStorage: MRILocalStorageService; + + constructor() { + this.loader = null; + this.volumeSet = new VolumeSet(); + this.fileReader = new FileReader(); + + this.fileName = ''; + this.fileExtension = ''; + + this.store = mriStoreService; + this.events = mriEventsService; + this.localStorage = mriLocalStorageService; + + this.callbackReadProgress = this.callbackReadProgress.bind(this); + this.callbackReadComplete = this.callbackReadComplete.bind(this); + } + + public handleVolumeLoadSuccess() { + const volume = this.volumeSet.getVolume(this.volumeIndex); + + if (!volume.m_dataArray) return; + + if (volumeConfig.setTextureSize4X) { + volume.makeDimensions4x(); + } + + this.callbackReadProgress(1); + this.localStorage.saveRecentFiles(this.fileName); + this.store.setVolume(this.volumeSet, this.volumeIndex, this.fileName); + + if (this.store.getState().graphics2d) { + this.store.getState().graphics2d.forceUpdate(); + } + } + + public handleVolumeLoadFailed(error: string) { + this.events.emit(MriEvents.FILE_READ_ERROR, { error }); + this.store.setVolumeLoadFailed(this.fileName, [error]); + } + + public callbackReadProgress(progress: number) { + const progressPercentage: number = Math.floor(progress * 100); + + if (progressPercentage >= 99) { + this.store.setLoadingProgress(0); + } else { + this.store.setLoadingProgress(progressPercentage); + } + } + + public callbackReadComplete(status: number) { + if (status === LoadResult.SUCCESS) { + this.handleVolumeLoadSuccess(); + } else { + const error = LoadResult.getResultString(status); + this.handleVolumeLoadFailed(error); + } + } +} diff --git a/src/engine/lib/core/readers/index.ts b/src/engine/lib/core/readers/index.ts new file mode 100644 index 00000000..f0705895 --- /dev/null +++ b/src/engine/lib/core/readers/index.ts @@ -0,0 +1,3 @@ +import mriFileReader, { MRIFileReader } from './MRIFileReader'; + +export { mriFileReader, MRIFileReader }; diff --git a/src/engine/lib/core/readers/local/ArchiveReader.ts b/src/engine/lib/core/readers/local/ArchiveReader.ts new file mode 100644 index 00000000..5fc2e40d --- /dev/null +++ b/src/engine/lib/core/readers/local/ArchiveReader.ts @@ -0,0 +1,56 @@ +import JSZip from 'jszip'; + +const IGNORED_FILE_PREFIXES = ['__MACOSX/', '._']; + +export class ArchiveReader { + /** + * Reads the provided ZIP file and returns the list of extracted files. + * @param file - The ZIP file to be read. + * @returns A promise that resolves to an array of files extracted from the ZIP. + */ + async readZipFile(file: File): Promise { + const zip = new JSZip(); + const unzippedFiles: File[] = []; + + const arrayBuffer = await this.readFileAsArrayBuffer(file); + + // Load the ZIP file + await zip.loadAsync(arrayBuffer); + + // Use the original order in the ZIP file + for (const fileName in zip.files) { + // Skip OS specific files and folders + if (this.shouldSkipFile(fileName)) { + continue; + } + + const zipObject = zip.files[fileName]; + + if (!zipObject.dir) { + const blob = await zipObject.async('blob'); + unzippedFiles.push(new File([blob], fileName, { type: blob.type })); + } + } + + return unzippedFiles.sort((a, b) => a.name.localeCompare(b.name)); + } + + /** + * Determines if a file from the ZIP should be skipped based on its name. + * @param fileName - The name of the file to check. + * @returns True if the file should be skipped, false otherwise. + */ + private shouldSkipFile(fileName: string): boolean { + return IGNORED_FILE_PREFIXES.some((prefix) => fileName.startsWith(prefix)); + } + + // Function to read a file as ArrayBuffer + readFileAsArrayBuffer(file: File): Promise { + return new Promise((resolve, reject) => { + const reader = new FileReader(); + reader.onload = () => resolve(reader.result as ArrayBuffer); + reader.onerror = reject; + reader.readAsArrayBuffer(file); + }); + } +} diff --git a/src/engine/lib/core/readers/local/MRIFileReaderFactory.ts b/src/engine/lib/core/readers/local/MRIFileReaderFactory.ts new file mode 100644 index 00000000..6c8b0eff --- /dev/null +++ b/src/engine/lib/core/readers/local/MRIFileReaderFactory.ts @@ -0,0 +1,44 @@ +import { MriEvents } from '../../../enums'; +import mriEventsService, { MRIEventsService } from '../../../services/EventsService'; +import { ArchiveReader } from './ArchiveReader'; +import { MultiFileReader } from './MultiFileReader'; +import { SingleFileReader } from './SingleFileReader'; + +const ZIP_EXTENSION = '.zip'; + +export class MRIFileReaderFactory { + localFileReader: SingleFileReader | MultiFileReader | ArchiveReader | null; + events: MRIEventsService; + + constructor() { + this.localFileReader = null; + this.events = mriEventsService; + + this.read = this.read.bind(this); + } + + async read(files: File[]): Promise { + if (!files || !files.length) { + return this.events.emit(MriEvents.FILE_READ_ERROR, { error: 'No files provided' }); + } + this.events.emit(MriEvents.FILE_SELECTED); + + // Single ZIP file scenario + if (files.length === 1 && files[0].name.endsWith(ZIP_EXTENSION)) { + this.localFileReader = new ArchiveReader(); + const unzippedFiles = await this.localFileReader.readZipFile(files[0]); + return this.read(unzippedFiles); + } + + // Single non-ZIP file scenario + if (files.length === 1) { + this.localFileReader = new SingleFileReader(); + return this.localFileReader.read(files[0]); + } + + // Multiple files scenario + this.localFileReader = new MultiFileReader(); + (this.localFileReader as MultiFileReader).read(files); + console.log('localFileReader = ', this.localFileReader); + } +} diff --git a/src/engine/lib/core/readers/local/MultiFileReader.ts b/src/engine/lib/core/readers/local/MultiFileReader.ts new file mode 100644 index 00000000..d84b2b74 --- /dev/null +++ b/src/engine/lib/core/readers/local/MultiFileReader.ts @@ -0,0 +1,144 @@ +import LoadResult from '../../../../LoadResult'; +import Volume from '../../../../Volume'; +import LoaderDcmDaikon from '../../../../loaders/LoaderDcmDaikon'; +import LoaderDicom from '../../../../loaders/LoaderDicom'; +import LoaderHdr from '../../../../loaders/LoaderHdr'; +import { SingleFileReader } from './SingleFileReader'; + +export class MultiFileReader extends SingleFileReader { + files: Array; + initialFile: File | null; + fileIndex: number; + volumeRoi: Volume; + filesLength: number; + + constructor() { + super(); + this.files = []; + this.filesLength = 0; + this.fileIndex = 0; + this.initialFile = null; + + this.volumeRoi = new Volume(); + this.read = this.read.bind(this); + this.readMultipleHdr = this.readMultipleHdr.bind(this); + this.onFileContentReadMultipleDicom = this.onFileContentReadMultipleDicom.bind(this); + } + + read(files: any): void { + this.files = Array.from(files); + this.filesLength = this.files.length; + this.volumeSet.addVolume(new Volume()); + this.readFile(0); + this.callbackReadProgress(0); + + switch (this.fileExtension) { + case 'dcm': + this.loader = new LoaderDicom(this.files.length); + this.store.setDicomLoader(this.loader); + this.fileReader.onloadend = this.onFileContentReadMultipleDicom; + break; + case 'hdr': + case 'img': + this.loader = new LoaderHdr(); + this.fileReader.onloadend = this.readMultipleHdr; + break; + default: + this.handleVolumeLoadFailed(`Unsupported file extension: ${this.fileExtension}`); + break; + } + } + + readSliceDicomViaDaikon(fileIndex: number, fileName: string, content: string | ArrayBuffer | null) { + const loaderDaikon = new LoaderDcmDaikon(); + return loaderDaikon.readSlice(this.loader, fileIndex, fileName, content); + } + + readFile(index: number): void { + const file = this.files[index]; + this.setFileData(file); + this.fileReader.readAsArrayBuffer(file); + this.callbackReadProgress(this.fileIndex / this.filesLength); + } + + onFileContentReadMultipleDicom(): void { + this.fileIndex++; + + if (this.fileIndex === this.files.length) { + return this.callbackReadSingleDicomComplete(LoadResult.SUCCESS); + } + const readStatus = this.readSliceDicomViaDaikon(this.fileIndex, this.fileName, this.fileReader.result); + + if (readStatus === LoadResult.SUCCESS && this.fileIndex < this.files.length) { + this.readFile(this.fileIndex); + this.fileReader.onloadend = this.onFileContentReadMultipleDicom; + } else { + this.handleVolumeLoadFailed(`Failed on parsing of this file: ${this.fileName}.${this.fileExtension}`); + } + } + + readMultipleHdr() { + this.fileIndex++; + + const VALID_NUM_FILES_2 = 2; + const VALID_NUM_FILES_4 = 4; + + // Check if file is a header + + if (this.filesLength === VALID_NUM_FILES_4 && this.volumeRoi === null) { + this.volumeRoi = new Volume(); + } + + // Extract main part of the filename + const regExpFileName = /([\S]+)\.[\S]+/; + const fnameArr = regExpFileName.exec(this.fileName); + let detectedMask = false; + let detectedIntensity = false; + + if (fnameArr && fnameArr.length === 2) { + const fname = fnameArr[1]; + detectedMask = fname.endsWith('_mask'); + detectedIntensity = fname.endsWith('_intn'); + } + + let volDst = this.volumeSet.getVolume(0); + + if (this.fileIndex > VALID_NUM_FILES_2) { + volDst = this.volumeRoi; + } + + if (detectedIntensity) { + volDst = this.volumeSet.getVolume(0); + } + + if (detectedMask && this.filesLength !== VALID_NUM_FILES_4) { + volDst = this.volumeRoi; + } + + const content = this.fileReader.result; + + const readSuccess = + this.fileExtension === 'hdr' + ? (this.loader as LoaderHdr).readFromBufferHeader(volDst, content, this.callbackReadProgress, this.callbackReadComplete) + : (this.loader as LoaderHdr).readFromBufferImage(volDst, content, this.callbackReadProgress, this.callbackReadComplete); + + volDst = this.volumeSet.getVolume(0); + + if (readSuccess && this.fileIndex === this.filesLength) { + const loaderHdr = this.loader as LoaderHdr; + let ok = loaderHdr.createVolumeFromHeaderAndImage(volDst); + + if (this.filesLength === VALID_NUM_FILES_4 && ok) { + ok = loaderHdr.createRoiVolumeFromHeaderAndImage(volDst, this.volumeRoi); + } + + this.callbackReadProgress(1.0); + this.callbackReadComplete(ok ? LoadResult.SUCCESS : LoadResult.UNKNOWN); + } + + if (this.fileIndex < this.filesLength) { + this.readFile(this.fileIndex); + this.fileReader.onloadend = this.readMultipleHdr; + } + } +} diff --git a/src/engine/lib/core/readers/local/SingleFileReader.ts b/src/engine/lib/core/readers/local/SingleFileReader.ts new file mode 100644 index 00000000..8e72d1a7 --- /dev/null +++ b/src/engine/lib/core/readers/local/SingleFileReader.ts @@ -0,0 +1,84 @@ +import StoreActionType from '../../../../../store/ActionTypes'; +import LoadResult from '../../../../LoadResult'; +import Volume from '../../../../Volume'; +import LoaderDcmDaikon from '../../../../loaders/LoaderDcmDaikon'; +import LoaderDicom from '../../../../loaders/LoaderDicom'; +import { MriEvents } from '../../../enums'; +import { AbstractMRIReader } from '../abstract/AbstractMRIReader'; + +export class SingleFileReader extends AbstractMRIReader { + constructor() { + super(); + this.read = this.read.bind(this); + this.readSingleFile = this.readSingleFile.bind(this); + this.localFileReadProgress = this.localFileReadProgress.bind(this); + this.callbackReadSingleDicomComplete = this.callbackReadSingleDicomComplete.bind(this); + } + + read(file: File): void { + this.setFileData(file); + this.fileReader.readAsArrayBuffer(file); + this.fileReader.onloadend = this.readSingleFile; + this.fileReader.addEventListener('progress', this.localFileReadProgress); + } + + readSingleFile() { + const data = this.fileReader.result; + this.volumeSet.addVolume(new Volume()); + this.readFileData(data); + } + + readFileData(data: string | ArrayBuffer | null) { + switch (this.fileExtension) { + case 'ktx': + this.volumeSet.readFromKtx(data, this.callbackReadProgress, this.callbackReadComplete); + break; + case 'nii': + this.volumeSet.readFromNifti(data, this.callbackReadProgress, this.callbackReadComplete); + break; + case 'dcm': + case 'txt': + this.readFromDicom(data); + break; + default: + this.handleVolumeLoadFailed(`Unsupported file extension: ${this.fileExtension}`); + break; + } + } + + readFromDicom(content: string | ArrayBuffer | null) { + this.loader = new LoaderDicom(1); + const loaderDcm = new LoaderDcmDaikon(); + const status = loaderDcm.readSingleSlice(this.store, this.loader, 0, this.fileName, content); + this.callbackReadSingleDicomComplete(status); + return status; + } + + setFileData(file: File): void { + this.fileName = file.name.toLowerCase(); + this.fileExtension = this.fileName.split('.').pop() as string; + } + + localFileReadProgress({ loaded, total }: { loaded: number; total: number }) { + this.callbackReadProgress(loaded / total); + } + + callbackReadSingleDicomComplete(status: number) { + if (status !== LoadResult.SUCCESS) { + return this.callbackReadComplete(status); + } + + this.callbackReadProgress(1); + this.store.setSingleDicom(this.volumeSet, this.volumeIndex, this.loader); + this.events.emit(MriEvents.FILE_READ_SUCCESS); + } + + handleVolumeParametersSetSuccess(): void { + this.handleVolumeLoadSuccess(); + + if (this.loader && this.loader instanceof LoaderDicom) { + const dicomSeries = this.loader.m_slicesVolume.getSeries(); + this.store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries }); + } + } +} diff --git a/src/engine/lib/core/readers/url/MRIUrlReader.ts b/src/engine/lib/core/readers/url/MRIUrlReader.ts new file mode 100644 index 00000000..37ecc63b --- /dev/null +++ b/src/engine/lib/core/readers/url/MRIUrlReader.ts @@ -0,0 +1,41 @@ +import Volume from '../../../../Volume'; +import FileTools from '../../../../loaders/FileTools'; +import LoaderDcmUrlDaikon from '../../../../loaders/LoadDcmUrlDiakon'; +import { AbstractMRIReader } from '../abstract/AbstractMRIReader'; + +export class MRIUrlReader extends AbstractMRIReader { + constructor() { + super(); + this.read = this.read.bind(this); + } + + read(url: string): void { + this.store.startLoadingSpinner(); + this.volumeSet.addVolume(new Volume()); + this.fileName = FileTools.getFileNameFromUrl(url); + this.fileExtension = url.slice(url.lastIndexOf('.')); + this.readFileByUrl(url); + } + + readFileByUrl(url: string) { + switch (this.fileExtension) { + case '.ktx': + this.volumeSet.readFromKtxUrl(url, this.callbackReadProgress, this.callbackReadComplete); + break; + case '.nii': + this.volumeSet.readFromNiiUrl(url, this.callbackReadProgress, this.callbackReadComplete); + break; + case '.dcm': + case '.txt': + const loaderUrlDcm = new LoaderDcmUrlDaikon(); + loaderUrlDcm.readFromUrl(this.volumeSet, url, this.callbackReadComplete, this.callbackReadProgress); + break; + case '.hdr': + this.volumeSet.readFromHdrUrl(url, this.callbackReadProgress, this.callbackReadComplete); + break; + default: + this.handleVolumeLoadFailed(`Unsupported file extension: ${this.fileExtension}`); + break; + } + } +} diff --git a/src/engine/lib/enums/events.enum.ts b/src/engine/lib/enums/events.enum.ts new file mode 100644 index 00000000..f1ed172b --- /dev/null +++ b/src/engine/lib/enums/events.enum.ts @@ -0,0 +1,7 @@ +/* eslint-disable no-unused-vars */ +export enum MriEvents { + FILE_READ_SUCCESS = 'fileReadSuccess', + FILE_READ_ERROR = 'fileReadError', + FILE_SELECTED = 'fileSelectSucces', +} +/* eslint-enable no-unused-vars */ diff --git a/src/engine/lib/enums/index.ts b/src/engine/lib/enums/index.ts new file mode 100644 index 00000000..c556eeed --- /dev/null +++ b/src/engine/lib/enums/index.ts @@ -0,0 +1 @@ +export * from './events.enum'; diff --git a/src/engine/lib/index.d.ts b/src/engine/lib/index.d.ts new file mode 100644 index 00000000..e69de29b diff --git a/src/engine/lib/interfaces/index.ts b/src/engine/lib/interfaces/index.ts new file mode 100644 index 00000000..52b56386 --- /dev/null +++ b/src/engine/lib/interfaces/index.ts @@ -0,0 +1,3 @@ +export interface data { + data: any; +} diff --git a/src/engine/lib/services/EventsService.ts b/src/engine/lib/services/EventsService.ts new file mode 100644 index 00000000..deab2824 --- /dev/null +++ b/src/engine/lib/services/EventsService.ts @@ -0,0 +1,28 @@ +export class MRIEventsService { + private events: { [key: string]: Function[] } = {}; + + on(eventName: string, fn: Function): Function { + if (!this.events[eventName]) { + this.events[eventName] = []; + } + this.events[eventName].push(fn); + return () => this.off(eventName, fn); + } + + off(eventName: string, fn: Function): void { + if (!this.events[eventName]) return; + this.events[eventName] = this.events[eventName].filter((subscriber) => subscriber !== fn); + } + + emit(eventName: string, data = {}): void { + if (!this.events[eventName]) return; + this.events[eventName].forEach((fn) => fn(data)); + } +} + +// Create the singleton instance and freeze it +const mriEventsService = new MRIEventsService(); +Object.freeze(mriEventsService); + +// Export the MRIEventsService singleton instance +export default mriEventsService; diff --git a/src/engine/lib/services/LocalStorageService.ts b/src/engine/lib/services/LocalStorageService.ts new file mode 100644 index 00000000..e79986d8 --- /dev/null +++ b/src/engine/lib/services/LocalStorageService.ts @@ -0,0 +1,38 @@ +export class MRILocalStorageService { + RECENT_FILES_KEY: string = 'recentFiles'; + + constructor() { + this.saveRecentFiles = this.saveRecentFiles.bind(this); + } + + get localStorage(): Storage { + if (!localStorage) { + throw new Error('Local Storage is not available'); + } + + return localStorage; + } + + getData(key: string): any { + const stringData: string = this.localStorage.getItem(key) || ''; + return JSON.parse(stringData); + } + + setData(key: string, data: any): void { + this.localStorage.setItem(key, JSON.stringify(data)); + } + + saveRecentFiles(fileName: string): void { + const recentFiles = this.getData(this.RECENT_FILES_KEY); + const limitedRecentFiles = recentFiles.slice(0, 2); + const data = [{ fileName, timestamp: Date.now() }, ...limitedRecentFiles]; + this.setData(this.RECENT_FILES_KEY, data); + } +} + +// Create the singleton instance and freeze it +const mriLocalStorageService = new MRILocalStorageService(); +Object.freeze(mriLocalStorageService); + +// Export the FileLoader singleton instance +export default mriLocalStorageService; diff --git a/src/engine/lib/services/StoreService.ts b/src/engine/lib/services/StoreService.ts new file mode 100644 index 00000000..c5980ed7 --- /dev/null +++ b/src/engine/lib/services/StoreService.ts @@ -0,0 +1,96 @@ +import { Store } from 'redux'; +import { store } from '../../../store'; +import StoreActionType from '../../../store/ActionTypes'; +import Modes3d from '../../../store/Modes3d'; +import ViewMode from '../../../store/ViewMode'; +import VolumeSet from '../../VolumeSet'; +import LoaderDicom from '../../loaders/LoaderDicom'; +import LoaderHdr from '../../loaders/LoaderHdr'; + +export class MRIStoreService { + private store: Store; + public dispatch: Function; + + constructor() { + this.store = store; + this.dispatch = store.dispatch; + + this.getState = this.getState.bind(this); + this.setVolume = this.setVolume.bind(this); + this.dispatchActions = this.dispatchActions.bind(this); + this.setLoadingProgress = this.setLoadingProgress.bind(this); + } + + public getState(): any { + return this.store.getState(); + } + + public dispatchActions(actions: any): void { + actions.forEach(this.dispatch); + } + + public startLoadingSpinner(): void { + this.setLoadingProgress(0); + this.dispatchActions([{ type: StoreActionType.SET_SPINNER, spinner: true }]); + } + + public setLoadingProgress(value: number): void { + this.dispatch({ + type: StoreActionType.SET_PROGRESS, + progress: value, + }); + } + + public setVolume(volumeSet: VolumeSet, volumeIndex: number, fileName: string): void { + const actions = [ + { type: StoreActionType.SET_FILENAME, fileName }, + { type: StoreActionType.SET_VOLUME_SET, volumeSet }, + { type: StoreActionType.SET_VOLUME_INDEX, volumeIndex }, + { type: StoreActionType.SET_MODE_3D, mode3d: Modes3d.RAYCAST }, + { type: StoreActionType.SET_MODE_VIEW, viewMode: ViewMode.VIEW_2D }, + { type: StoreActionType.SET_PROGRESS, progress: 0 }, + { type: StoreActionType.SET_SPINNER, spinner: false }, + { type: StoreActionType.SET_IS_LOADED, isLoaded: true }, + { type: StoreActionType.SET_ERR_ARRAY, arrErrors: [] }, + ]; + + this.dispatchActions(actions); + } + + public setSingleDicom(volumeSet: VolumeSet, volumeIndex: number, loaderDicom: LoaderDicom | LoaderHdr | null): void { + const actions = [ + { type: StoreActionType.SET_VOLUME_SET, volumeSet }, + { type: StoreActionType.SET_LOADER_DICOM, loaderDicom }, + { type: StoreActionType.SET_VOLUME_INDEX, volumeIndex }, + ]; + + this.dispatchActions(actions); + } + + public setDicomLoader(loaderDicom: LoaderDicom): void { + const actions = [ + { type: StoreActionType.SET_LOADER_DICOM, loaderDicom }, + { type: StoreActionType.SET_DICOM_INFO, dicomInfo: loaderDicom.m_dicomInfo }, + ]; + + this.dispatchActions(actions); + } + + public setVolumeLoadFailed(fileName: string, errors: string[]): void { + const actions = [ + { type: StoreActionType.SET_ERR_ARRAY, errors }, + { type: StoreActionType.SET_VOLUME_SET, volume: null }, + { type: StoreActionType.SET_FILENAME, fileName: fileName }, + { type: StoreActionType.SET_PROGRESS, progress: 0 }, + { type: StoreActionType.SET_IS_LOADED, isLoaded: false }, + ]; + + this.dispatchActions(actions); + } +} + +// Create the singleton instance and freeze it +const mriStoreService = new MRIStoreService(); +Object.freeze(mriStoreService); + +export default mriStoreService; diff --git a/src/engine/lib/services/index.ts b/src/engine/lib/services/index.ts new file mode 100644 index 00000000..0cdd4836 --- /dev/null +++ b/src/engine/lib/services/index.ts @@ -0,0 +1,2 @@ +export * from './StoreService'; +export * from './EventsService'; diff --git a/src/engine/loaders/FileLoader.js b/src/engine/loaders/FileLoader.js index bc3c62c6..4f037bbe 100644 --- a/src/engine/loaders/FileLoader.js +++ b/src/engine/loaders/FileLoader.js @@ -8,94 +8,138 @@ * @module src/demo/engine/loaders/FileLoader */ -// ****************************************************************** -// File loader -// ****************************************************************** - -/** Instance habdle for loader */ -let GInstanceFileLoader = null; - -/** Class FileLoader for load binary files */ +/** + * Class FileLoader to load binary files + */ export default class FileLoader { - /** Create empty loader - * @param {string} strUrl - URL for loaded file + static METHOD = 'GET'; + static NEED_ASYNC = true; + static RES_FAIL_404 = 404; + static NUMBER_OF_PARTS = 5; + + /** + * Create a new FileLoader + * @param {string} url - URL for the file to be loaded */ - constructor(strUrl) { - if (!GInstanceFileLoader) { - GInstanceFileLoader = this; - } - /** @property {string} m_url - Urlf ror file being read */ - this.m_url = strUrl; - /** @property {object} m_request - XMLHttpRequest object, used for acees to resource */ - this.m_request = null; - this.readFile = this.readFile.bind(this); + constructor(url) { + this.url = url; + this.request = null; } - /** Read file - * @param {object} doneCallback - invoked callback + /** + * Read file from specified URL + * @param {Function} doneCallback - Callback on successful read + * @param {Function} rejectCallback - Callback on read failure */ readFile(doneCallback, rejectCallback) { - const METHOD = 'GET'; - this.m_request = new XMLHttpRequest(); - if (!this.m_request) { - console.log('Cant create object request'); + this.request = new XMLHttpRequest(); + + if (!this.request || !('withCredentials' in this.request)) { + const err = 'This browser does not support CORS requests.'; + return rejectCallback(err); } - if ('withCredentials' in this.m_request) { - // this.m_request.withCredentials = true; - const NEED_ASYNC = true; - this.m_request.open(METHOD, this.m_url, NEED_ASYNC); - // } else if (typeof XDomainRequest !== 'undefined') { - // console.log('HttpRequest: XDomainRequest will be used'); - // this.m_request = new XDomainRequest(); - // this.m_request.open(METHOD, this.m_url); - } else { - this.m_request = null; - console.log('This browser cant support CORS requests'); - return; + + this.request.open(FileLoader.METHOD, this.url, FileLoader.NEED_ASYNC); + this.request.responseType = 'arraybuffer'; + + this.request.addEventListener('load', (event) => { + const arrayBuffer = event.target.response; + + if (!arrayBuffer) { + const err = 'Bad response type. Expect object type in response.'; + return rejectCallback(err); + } + + doneCallback(arrayBuffer); + }); + + this.request.addEventListener('error', () => { + const err = `Error accessing file ${this.url}`; + rejectCallback(err); + }); + + this.request.send(); + + if (this.request.status === FileLoader.RES_FAIL_404) { + const err = `Cannot access URL: ${this.url}`; + rejectCallback(err); } + } - this.m_request.responseType = 'arraybuffer'; // "blob" - this.m_request.addEventListener( - 'load', - (event) => { - const arrBuf = event.target.response; - if (arrBuf === null) { - console.log('Bad response type. Expect object type in response.'); - } else if (doneCallback) { - // console.log(`FileFromServer response received. url = ${this.m_url}`); - - // check wrong buffer content - const enc = new TextDecoder('utf-8'); - let sz = arrBuf.byteLength; - if (sz > 4000) { - sz = 4000; - } - const bufHead = arrBuf.slice(0, sz); - const strBuf = enc.decode(bufHead); - if (strBuf.substr(0, 9) === ' { + if (headRequest.readyState === 4 && headRequest.status === 200) { + const fileSize = headRequest.getResponseHeader('Content-Length'); + + if (!fileSize) { + rejectCallback('Failed to retrieve file size.'); + return; } - }, - false - ); - - this.m_request.addEventListener( - 'error', - () => { - // console.log(`Error event happend for XMLHttpRequest: loaded = ${event.loaded}, total = ${event.total}`); - const errMsg = `Error accessing file ${this.m_url}`; - rejectCallback(errMsg); - }, - false - ); - - this.m_request.send(); - const RES_FAIL_404 = 404; - if (this.m_request.status === RES_FAIL_404) { - const errMsg = `Cant access url = ${this.m_url}`; - rejectCallback(errMsg); - } + + // Step 2: Split the file size into 5 parts + const partSize = Math.ceil(fileSize / FileLoader.NUMBER_OF_PARTS); + const promises = []; + + for (let i = 0; i < FileLoader.NUMBER_OF_PARTS; i++) { + const start = i * partSize; + const end = i + 1 === FileLoader.NUMBER_OF_PARTS ? '' : start + partSize - 1; + promises.push(this.loadRange(start, end)); + } + + // Step 3: Load each part + Promise.all(promises) + .then((parts) => { + // Step 4: Merge the results + console.log('parts = ', parts); + const mergedBuffer = this.mergeArrayBuffers(parts); + // Step 5: Process the merged result + doneCallback(mergedBuffer); + }) + .catch((err) => { + rejectCallback(err); + }); + } + }; + + headRequest.send(); + } + + loadRange(start, end) { + return new Promise((resolve, reject) => { + const request = new XMLHttpRequest(); + request.open(FileLoader.METHOD, this.url, FileLoader.NEED_ASYNC); + request.responseType = 'arraybuffer'; + request.setRequestHeader('Range', `bytes=${start}-${end}`); + request.onload = () => { + if (request.status >= 200 && request.status < 300) { + resolve(request.response); + } else { + reject(`Error loading range: ${start}-${end}`); + } + }; + request.onerror = () => reject(`Network error for range: ${start}-${end}`); + request.send(); + }); + } + + mergeArrayBuffers(arrayBuffers) { + // Calculate the total length for the merged buffer + const totalLength = arrayBuffers.reduce((acc, buffer) => acc + buffer.byteLength, 0); + + // Create a new buffer and a view to copy into + const mergedBuffer = new ArrayBuffer(totalLength); + const mergedView = new Uint8Array(mergedBuffer); + + let offset = 0; + arrayBuffers.forEach((buffer) => { + // Copy the current buffer into the merged buffer at the current offset + mergedView.set(new Uint8Array(buffer), offset); + offset += buffer.byteLength; + }); + + return mergedBuffer; } -} // end class FileLoader +} diff --git a/src/engine/loaders/FileReader.js b/src/engine/loaders/FileReader.js deleted file mode 100644 index 16b4728a..00000000 --- a/src/engine/loaders/FileReader.js +++ /dev/null @@ -1,904 +0,0 @@ -/* - * Copyright 2022 EPAM Systems, Inc. (https://www.epam.com/) - * SPDX-License-Identifier: Apache-2.0 - */ - -// import { gzip, ungzip } from 'node-gzip'; -// import UiModalDicomSeries from './UiModalDicomSeries'; - -import React from 'react'; -import zlib from 'zlib'; -import createReadStream from 'filereader-stream'; - -import StoreActionType from '../../store/ActionTypes'; -import ViewMode from '../../store/ViewMode'; -import Modes3d from '../../store/Modes3d'; - -import Volume from '../Volume'; -import VolumeSet from '../VolumeSet'; - -import LoaderHdr from './LoaderHdr'; -import FileTools from './FileTools'; -import LoadResult from '../LoadResult'; -import LoaderDicom from './LoaderDicom'; -import LoaderUrlDicom from './LoaderUrlDicom'; -import LoaderDcmDaikon from './LoaderDcmDaikon'; -import LoaderDcmUrlDaikon from './LoadDcmUrlDiakon'; - -import config from '../../config/config'; - -const NEED_TEXTURE_SIZE_4X = true; -const READ_DICOM_VIA_DAIKON = true; - -class FileReader extends React.Component { - constructor(props) { - super(props); - this.onButtonOpenLocalFileClick = this.onButtonOpenLocalFileClick.bind(this); - this.handleFileSelected = this.handleFileSelected.bind(this); - this.onFileContentReadSingleFile = this.onFileContentReadSingleFile.bind(this); - this.onFileContentReadMultipleDicom = this.onFileContentReadMultipleDicom.bind(this); - this.onFileContentReadMultipleHdr = this.onFileContentReadMultipleHdr.bind(this); - this.setErrorString = this.setErrorString.bind(this); - this.onModalUrlShow = this.onModalUrlShow.bind(this); - this.onModalUrlHide = this.onModalUrlHide.bind(this); - this.onClickLoadUrl = this.onClickLoadUrl.bind(this); - this.callbackReadCompleteUrlKtxNii = this.callbackReadCompleteUrlKtxNii.bind(this); - this.onModalDemoOpenShow = this.onModalDemoOpenShow.bind(this); - this.onModalDemoOpenHide = this.onModalDemoOpenHide.bind(this); - this.onDemoSelected = this.onDemoSelected.bind(this); - this.onModalWindowCWHide = this.onModalWindowCWHide.bind(this); - this.onModalGoogleShow = this.onModalGoogleShow.bind(this); - this.onModalGoogleHide = this.onModalGoogleHide.bind(this); - this.onGoogleSelected = this.onGoogleSelected.bind(this); - this.onModalDicomSeriesHide = this.onModalDicomSeriesHide.bind(this); - this.onDicomSerieSelected = this.onDicomSerieSelected.bind(this); - this.callbackReadProgress = this.callbackReadProgress.bind(this); - this.callbackReadComplete = this.callbackReadComplete.bind(this); - this.callbackReadSingleDicomComplete = this.callbackReadSingleDicomComplete.bind(this); - this.callbackReadMultipleComplete = this.callbackReadMultipleComplete.bind(this); - this.callbackCompleteMultipleDicom = this.callbackCompleteMultipleDicom.bind(this); - - this.m_fileNameOnLoad = ''; - this.m_fileName = ''; - this.m_fileIndex = 0; - this.m_fileReader = null; - this.m_fileSelector = this.buildFileSelector(); - this.m_fileSize = null; - this.state = { - showModalUrl: false, - showModalDemo: false, - showModalGoogle: false, - showModalWindowCW: false, - onLoadCounter: 1, - }; - this.m_volumeSet = null; - this.m_volumeRoi = null; - this.m_updateEnable = true; - this.roiMode = false; - } - - finalizeSuccessLoadedVolume(volSet, fileNameIn) { - const store = this.props; - - console.assert(volSet instanceof VolumeSet, 'finalizeSuccessLoadedVolume: should be VolumeSet'); - console.assert(volSet.getNumVolumes() >= 1, 'finalizeSuccessLoadedVolume: should be more or 1 volume'); - const indexVol = 0; - - const vol = volSet.getVolume(indexVol); - console.assert(vol !== null, 'finalizeSuccessLoadedVolume: should be non zero volume'); - - if (vol.m_dataArray !== null) { - console.log(`success loaded volume from ${fileNameIn}`); - - this.saveFileNameToLocalStorage(fileNameIn); - - if (NEED_TEXTURE_SIZE_4X) { - vol.makeDimensions4x(); - } - // invoke notification - - // send update (repaint) if was loaded prev model - if (store.isLoaded) { - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - } - - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: volSet }); - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: true }); - store.dispatch({ type: StoreActionType.SET_FILENAME, fileName: fileNameIn }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: [] }); - store.dispatch({ type: StoreActionType.SET_MODE_VIEW, viewMode: ViewMode.VIEW_2D }); - store.dispatch({ type: StoreActionType.SET_MODE_3D, mode3d: Modes3d.RAYCAST }); - store.dispatch({ type: StoreActionType.SET_SPINNER, spinner: false }); - } - } - - setErrorString(strErr) { - const store = this.props; - const arrErrors = []; - arrErrors.push(strErr); - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: arrErrors }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volume: null }); - } - - finalizeFailedLoadedVolume(volSet, fileNameIn, arrErrors) { - console.assert(arrErrors !== undefined); - // invoke notification - const store = this.props; - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volume: null }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: arrErrors }); - store.dispatch({ type: StoreActionType.SET_FILENAME, fileName: fileNameIn }); - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - } - - callbackReadProgress(ratio01) { - // console.log(`callbackReadProgress = ${ratio01}`); - const ratioPrc = Math.floor(ratio01 * 100); - const store = this.props; - console.log('ratioPrc ===================> ' + ratioPrc); - console.log('ratio01 ===================> ' + ratio01); - if (ratioPrc >= 99) { - // console.log(`callbackReadProgress. hide on = ${ratio01}`); - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - } else { - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: ratioPrc, - }); - } - } // callback progress - - callbackReadComplete(errCode) { - if (errCode === undefined) { - console.log('callbackReadComplete. should be errCode'); - } else { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - const store = this.props; - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - if (errCode === LoadResult.SUCCESS) { - // console.log('callbackReadComplete finished OK'); - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - } else { - console.log(`callbackReadComplete failed! reading ${this.m_fileName} file`); - const arrErr = []; - const strErr = LoadResult.getResultString(errCode); - arrErr.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErr); - } - } - - callbackReadSingleDicomComplete(errCode) { - if (errCode === LoadResult.SUCCESS) { - const store = this.props; - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: this.m_volumeSet }); - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - - // show modal: select window center, width - this.setState({ showModalWindowCW: true }); - return; // do nothing immediately after: wait for dialog - } - this.callbackReadComplete(errCode); - } - - callbackReadMultipleComplete(errCode) { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - - onFileContentReadSingleFile() { - let strContent = this.m_fileReader.result; - this.onFileReadSingleBuffer(strContent); - console.log(this.onFileReadSingleBuffer(strContent)); - } - - // - // daikon read individual slice from file buffer (one from multiple files) - // strContent is ArrayBuffer - readSliceDicomViaDaikon(fileIndex, fileName, ratioLoad, strContent) { - const loaderDaikon = new LoaderDcmDaikon(); - return loaderDaikon.readSlice(this.m_loader, fileIndex, fileName, strContent); - } // end read single slice via daikon - - // - // based on local file read - // read from string content in this.m_fileReader.result - // - onFileReadSingleBuffer(strContent) { - // daikon read - // strContent is ArrayBuffer - if ((this.m_fileName.endsWith('.dcm') || this.m_fileName.endsWith('.DCM')) && READ_DICOM_VIA_DAIKON) { - const loaderDcm = new LoaderDcmDaikon(); - const store = this.props; - const fileIndex = this.m_fileIndex; - const fileName = this.m_fileName; - this.m_loader = new LoaderDicom(1); - const ret = loaderDcm.readSingleSlice(store, this.m_loader, fileIndex, fileName, strContent); - this.callbackReadSingleDicomComplete(ret); - return ret; - } - - console.log('UiOpenMenu. onFileReadSingleBuffer ...'); - // console.log(`file content = ${strContent.substring(0, 64)}`); - // console.log(`onFileContentRead. type = ${typeof strContent}`); - this.m_volumeSet = new VolumeSet(); - // add empty [0]-th volume in set to read single file - this.m_volumeSet.addVolume(new Volume()); - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadComplete; - const callbackCompleteSingleDicom = this.callbackReadSingleDicomComplete; - - if (this.m_fileName.endsWith('.ktx') || this.m_fileName.endsWith('.KTX')) { - // if read ktx - // debugger; - this.m_volumeSet.readFromKtx(strContent, callbackProgress, callbackComplete); - } else if (this.m_fileName.endsWith('.nii') || this.m_fileName.endsWith('.NII')) { - this.m_volumeSet.readFromNifti(strContent, callbackProgress, callbackComplete); - } else if (this.m_fileName.endsWith('.dcm') || this.m_fileName.endsWith('.DCM')) { - this.m_loader = new LoaderDicom(); - this.m_loader.m_zDim = 1; - this.m_loader.m_numFiles = 1; - this.m_volumeSet.readFromDicom(this.m_loader, strContent, callbackProgress, callbackCompleteSingleDicom); - // save dicomInfo to store - const dicomInfo = this.m_loader.m_dicomInfo; - const sliceInfo = dicomInfo.m_sliceInfo[0]; - sliceInfo.m_fileName = this.m_fileName; - sliceInfo.m_sliceName = 'Slice 0'; - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_INFO, dicomInfo: dicomInfo }); - } else if (this.m_fileName.endsWith('.hdr') || this.m_fileName.endsWith('.HDR')) { - // readOk = vol.readFromHdrHeader(strContent, callbackProgress, callbackComplete); - console.log(`cant read single hdr file: ${this.m_fileName}`); - // readStatus = LoadResult.BAD_HEADER; - } else if (this.m_fileName.endsWith('.img') || this.m_fileName.endsWith('.IMG')) { - // readOk = vol.readFromHdrImage(strContent, callbackProgress, callbackComplete); - console.log(`cant read single img file: ${this.m_fileName}`); - // readStatus = LoadResult.BAD_HEADER; - } else { - console.log(`onFileContentReadSingleFile: unknown file type: ${this.m_fileName}`); - } - } - - // - // read hdr/img. content is in this.m_fileReader.result - // - onFileContentReadMultipleHdr() { - const VALID_NUM_FILES_2 = 2; - const VALID_NUM_FILES_4 = 4; - if (this.m_numFiles !== VALID_NUM_FILES_2 && this.m_numFiles !== VALID_NUM_FILES_4) { - console.log(`onFileContentReadMultipleHdr: can read ${VALID_NUM_FILES_2} or ${VALID_NUM_FILES_4} files for multiple hdr loader`); - return; - } - - const isHdr = this.m_fileName.endsWith('hdr') || this.m_fileName.endsWith('HDR'); - console.log(`onFileContentReadMultipleHdr: read file ${this.m_fileName}. Ratio=${this.m_fileIndex} / ${this.m_numFiles}`); - this.m_fileIndex++; - const ratioLoad = this.m_fileIndex / this.m_numFiles; - const strContent = this.m_fileReader.result; - // const lenContent = strContent.length; - - if (this.m_fileIndex <= 1) { - // add single volume to set - if (this.m_volumeSet.getNumVolumes() === 0) { - this.m_volumeSet.addVolume(new Volume()); - } - this.callbackReadProgress(0.0); - } - - if (this.m_numFiles === VALID_NUM_FILES_4 && this.m_volumeRoi === null) { - this.m_volumeRoi = new Volume(); - } - - const callbackProgress = null; - const callbackComplete = null; - - const regExpFileName = /([\S]+)\.[\S]+/; - const fnameArr = regExpFileName.exec(this.m_fileName); - const numFN = fnameArr.length; - let detectedMask = false; - let detectedIntensity = false; - if (numFN === 2) { - const fname = fnameArr[1]; - if (fname.endsWith('_mask')) { - detectedMask = true; - } - if (fname.endsWith('_intn')) { - detectedIntensity = true; - } - } - let volDst = this.m_volumeSet.getVolume(0); - if (this.m_fileIndex > VALID_NUM_FILES_2) { - volDst = this.m_volumeRoi; - } - if (detectedIntensity) { - volDst = this.m_volumeSet.getVolume(0); - } - if (detectedMask) { - volDst = this.m_volumeRoi; - this.roiMode = true; - // console.log('mask vol by name'); - if (this.m_numFiles !== VALID_NUM_FILES_4) { - console.log('You need to load 4 files, if one of them has _mask in name'); - return; - } - } - - // read header or image from src files - let readOk; - if (isHdr) { - readOk = this.m_loader.readFromBufferHeader(volDst, strContent, callbackProgress, callbackComplete); - } else { - readOk = this.m_loader.readFromBufferImage(volDst, strContent, callbackProgress, callbackComplete); - } - - // create final volume from readed data - volDst = this.m_volumeSet.getVolume(0); - if (readOk && this.m_fileIndex === this.m_numFiles) { - let ok = false; - if (this.m_numFiles === VALID_NUM_FILES_2) { - ok = this.m_loader.createVolumeFromHeaderAndImage(volDst); - } else if (this.m_numFiles === VALID_NUM_FILES_4) { - // intensity data 16 -> 8 bpp - ok = this.m_loader.createVolumeFromHeaderAndImage(volDst); - if (ok) { - // mix 8 bpp intensity and roi pixels - ok = this.m_loader.createRoiVolumeFromHeaderAndImage(volDst, this.m_volumeRoi); - } - } - this.callbackReadProgress(1.0); - if (!ok) { - this.callbackReadComplete(LoadResult.FAIL); - } else { - this.callbackReadComplete(LoadResult.SUCCESS); - } - } - - // read again new file - if (this.m_fileIndex < this.m_numFiles) { - this.callbackReadProgress(ratioLoad); - this.m_fileReader.onloadend = this.onFileContentReadMultipleHdr; - const file = this.m_files[this.m_fileIndex]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } - } // on multuple hdr - - // on complete read multuple dicom - callbackCompleteMultipleDicom(errCode) { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - - // - // read from string content in this.m_fileReader.result - // - onFileContentReadMultipleDicom() { - // console.log('UiOpenMenu. onFileContentReadMultipleDicom ...'); - const strContent = this.m_fileReader.result; - this.m_fileIndex++; - const ratioLoad = this.m_fileIndex / this.m_numFiles; - // console.log(`onFileContentReadMultipleDicom. r = ${ratioLoad}`); - const callbackProgress = null; - // const callbackComplete = this.callbackReadMultipleComplete; - - if (this.m_fileIndex <= 1) { - // add new volume to volume set on the first slice - const vol = new Volume(); - this.m_volumeSet.addVolume(vol); - // init progress on the first file loading - this.callbackReadProgress(0.0); - } - - // FIX 05/06/2020: read multiple dicom callback complete - // can be invoked with error code - const callbackColmpleteVoid = this.callbackCompleteMultipleDicom; - - let readStatus; - - if (READ_DICOM_VIA_DAIKON) { - readStatus = this.readSliceDicomViaDaikon(this.m_fileIndex - 1, this.m_fileName, ratioLoad, strContent); - } else { - readStatus = this.m_volumeSet.readSingleSliceFromDicom( - this.m_loader, - this.m_fileIndex - 1, - this.m_fileName, - ratioLoad, - strContent, - callbackProgress, - callbackColmpleteVoid - ); - } - - if (readStatus !== LoadResult.SUCCESS) { - console.log('onFileContentReadMultipleDicom. Error read individual file'); - } - if (readStatus === LoadResult.SUCCESS && this.m_fileIndex === this.m_numFiles) { - // setup global vars - const store = this.props; - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: this.m_volumeSet }); - - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - // stop show loading progress bar - this.callbackReadProgress(1.0); - this.callbackReadComplete(LoadResult.SUCCESS); - - // show modal: select window center, width - this.setState({ showModalWindowCW: true }); - return; // do nothing immediately after: wait for dialog - } // end if successfully read all files (multiple dicom read) - // read again new file - if (readStatus === LoadResult.SUCCESS) { - if (this.m_fileIndex < this.m_numFiles) { - // print console loading progress - const NUM_PARTS_REPORT = 16; - const STEP_PROGRESS = Math.floor(this.m_numFiles / NUM_PARTS_REPORT); - if (this.m_fileIndex % STEP_PROGRESS === 0) { - // console.log(`onFileContentReadMultipleDicom. Loading completed = ${ratioLoad}`); - this.callbackReadProgress(ratioLoad); - } - - this.m_fileReader.onloadend = this.onFileContentReadMultipleDicom; - const file = this.m_files[this.m_fileIndex]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } // if still need files - } else { - const arrErr = []; - const strErr = this.props.arrErrors[0]; - arrErr.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErr); - } // if result is not success - } - - // - // Perform open file after it selected in dialog - handleFileSelected(evt) { - const files = evt.target.files || evt.dataTransfer.files; - - if (!files) { - return; - } - - let numFiles = files.length; - console.log(`UiOpenMenu. Trying to open ${numFiles} files`); - if (numFiles <= 0) { - return; - } - console.log(`UiOpenMenu. handleFileSelected. file[0] = ${files[0].name}`); - // debugger; - console.log('evt = ' + files); - this.m_volumeSet = new VolumeSet(); - if (numFiles === 1) { - const file = files[0]; - this.m_fileName = file.name; - this.m_fileSize = file.size; - console.log('this.m_fileSize ->>>>>>>>>>>>>> ' + this.m_fileSize); - console.log('evt.loaded ->>>>>>>>>>>>>> ' + evt.loaded); - console.log('evt.total ->>>>>>>>>>>>>> ' + evt.total); - - // read gzip - if (this.m_fileName.endsWith('.gz')) { - // here will be result raw buffer - this.m_unzippedBuffer = null; - - // remove last 3 chars form file name string - this.m_fileName = this.m_fileName.slice(0, -3); - - const store = this.props; - - const gunzip = zlib.createGunzip(); - createReadStream(file).pipe(gunzip); - gunzip.on('data', (data) => { - if (this.m_unzippedBuffer == null) { - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - } else { - const readSize = this.m_unzippedBuffer.length; - const allSize = file.size; - const KOEF_DEFLATE = 0.28; - const ratio100 = Math.floor((readSize * 100.0 * KOEF_DEFLATE) / allSize); - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: ratio100 }); - } - - // read the data chunk-by-chunk - // data is Uint8Array - const dataSize = data.length; - if (this.m_unzippedBuffer == null) { - // create buffer from first ungzipped data chunk - this.m_unzippedBuffer = new Uint8Array(dataSize); - this.m_unzippedBuffer.set(data, 0); - } else { - // append buffer from 2,3,... ungzipped data chunks - const dataCollectedSize = this.m_unzippedBuffer.length; - const arrNew = new Uint8Array(dataCollectedSize + dataSize); - arrNew.set(this.m_unzippedBuffer, 0); - arrNew.set(data, dataCollectedSize); - this.m_unzippedBuffer = arrNew; - } - }); - gunzip.on('close', () => { - console.log('gzip on close'); - }); - - gunzip.on('end', () => { - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - // now all chunks are read. Need to check raw ungzipped buffer - const sizeBuffer = this.m_unzippedBuffer.length; - if (sizeBuffer < 128) { - console.log('Too small ungzipped data: ' + sizeBuffer.toString() + " bytes. can't read volume data"); - return; - } - // check correct nifti header after extract raw bytes from gzip - const headTemplate = [0x00, 0x00, 0x01, 0x5c]; - let correctHead0 = true; - for (let i = 0; i < 4; i++) { - if (this.m_unzippedBuffer[i] !== headTemplate[i]) { - correctHead0 = false; - } - } - let correctHead1 = true; - for (let i = 0; i < 4; i++) { - if (this.m_unzippedBuffer[i] !== headTemplate[3 - i]) { - correctHead1 = false; - } - } - if (!correctHead0 && !correctHead1) { - console.log('Wrong nifi header, cant read gzipped file'); - return; - } - console.log('ungzip done with ' + sizeBuffer.toString() + ' bytes. Correct nifti header detected'); - // process raw data buffer - this.onFileReadSingleBuffer(this.m_unzippedBuffer); - }); - return; - } // if gzipped file - this.m_fileReader = new window.FileReader(); - - const progressHandler = ({ loaded, total }) => { - this.callbackReadProgress(loaded / total); - }; - - console.log(this.m_fileReader); - - this.m_fileReader.addEventListener('progress', progressHandler); - this.m_fileReader.onloadend = this.onFileContentReadSingleFile; - this.m_fileReader.readAsArrayBuffer(file); - } else { - // not single file was open - this.m_files = Array.from(files); // FileList -> Array - this.m_fileIndex = 0; - this.m_numFiles = numFiles; - this.m_fileReader = new window.FileReader(); - // if multiple files, create Dicom loader - this.m_loader = null; - if (files[0].name.endsWith('.dcm')) { - // remove non-dcm files - let numFilesNew = 0; - for (let i = numFiles - 1; i >= 0; i--) { - if (this.m_files[i].name.endsWith('.dcm')) { - numFilesNew++; - } else { - this.m_files.splice(i, 1); - } - } - numFiles = numFilesNew; - this.m_numFiles = numFilesNew; - - this.m_loader = new LoaderDicom(numFiles); - const dicomInfo = this.m_loader.m_dicomInfo; - - // save dicomInfo to store - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_INFO, dicomInfo: dicomInfo }); - - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - - this.m_fileReader.onloadend = this.onFileContentReadMultipleDicom; - } else if (files[0].name.endsWith('.hdr') || files[0].name.endsWith('.img')) { - this.m_loader = new LoaderHdr(numFiles); - this.m_fileReader.onloadend = this.onFileContentReadMultipleHdr; - } - - //const vol = new Volume(); - //this.m_volume = vol; - this.m_volumeRoi = null; - - const file = files[0]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } // if event is not empty - } - - buildFileSelector() { - const fileSelector = document.createElement('input'); - fileSelector.setAttribute('type', 'file'); - fileSelector.setAttribute('hidden', 'true'); - fileSelector.setAttribute('accept', '.txt,.ktx,.dcm,.nii,.hdr,.h,.img,.gz'); - fileSelector.setAttribute('multiple', 'true'); - document.body.appendChild(fileSelector); - fileSelector.onchange = this.handleFileSelected; - return fileSelector; - } - - onButtonOpenLocalFileClick(evt) { - // console.log('onButtonLocalFile started'); - // debugger; - evt.preventDefault(); - this.m_fileSelector.click(); - } - - // - onModalUrlShow() { - console.log(`onModalUrlShow`); - this.setState({ showModalUrl: true }); - } - - onModalUrlHide() { - console.log(`onModalUrlHide`); - this.setState({ showModalUrl: false }); - } - - callbackReadCompleteUrlKtxNii(codeResult) { - if (codeResult !== LoadResult.SUCCESS) { - console.log(`onCompleteFromUrlKtx. Bad result: ${codeResult}`); - - const arrErrors = []; - const strErr = LoadResult.getResultString(codeResult); - arrErrors.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErrors); - } else { - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - this.callbackReadComplete(LoadResult.SUCCESS, null, 0, null); - } - } - - loadFromUrl(strUrl) { - if (FileTools.isValidUrl(strUrl)) { - this.m_url = strUrl; - - this.m_fileName = FileTools.getFileNameFromUrl(strUrl); - this.m_volumeSet = new VolumeSet(); - this.m_volumeSet.addVolume(new Volume()); - - if (strUrl.endsWith('.ktx')) { - // debugger; - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - // debugger; - this.m_volumeSet.readFromKtxUrl(strUrl, callbackProgress, callbackComplete); - // if KTX - } else if (strUrl.endsWith('.nii')) { - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromNiiUrl(strUrl, callbackProgress, callbackComplete); - // if NII (Nifti format) - } else if (strUrl.endsWith('.dcm')) { - if (READ_DICOM_VIA_DAIKON) { - const loaderUrlDcm = new LoaderDcmUrlDaikon(); - return loaderUrlDcm.readFromUrl(this.m_volumeSet, strUrl, this.callbackReadCompleteUrlKtxNii, this.callbackReadProgress); - } - - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromDicomUrl(strUrl, callbackProgress, callbackComplete); - // if Dicom - } else if (strUrl.endsWith('.hdr')) { - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromHdrUrl(strUrl, callbackProgress, callbackComplete); - // if Hdr - } else { - console.log(`UiOpenMenu. Unknown file type from URL = ${strUrl}`); - } - } else { - const strErr = `UiOpenMenu. Bad URL = ${strUrl}`; - console.log(strErr); - this.setErrorString(strErr); - } - } - - onClickLoadUrl(strUrl) { - this.setState({ showModalUrl: false }); - console.log(`onClickLoadUrl with strUrl = ${strUrl}`); - this.loadFromUrl(strUrl); - } - - // - onModalDemoOpenShow() { - this.setState({ showModalDemo: true }); - } - - onModalDemoOpenHide() { - this.setState({ showModalDemo: false }); - } - - // - arrNumToStr(arrNums) { - const numLet = arrNums.length; - let str = ''; - for (let i = 0; i < numLet; i++) { - const n = arrNums[i]; - str = str.concat(String.fromCharCode(n)); - } - return str; - } - - onModalGoogleShow() { - this.setState({ showModalGoogle: true }); - } - - onModalGoogleHide() { - this.setState({ showModalGoogle: false }); - } - - onGoogleSelected(index) { - // perform action on click i-th item in Google cloud menu . Or remove this menu completely - console.log(`onGoogleSelected(${index}) ... `); - } - - onDemoSelected(index) { - const store = this.props; - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - store.dispatch({ type: StoreActionType.SET_SPINNER, spinner: true }); - const arr = config.demoUrls; - if (arr.length >= 8) { - const fileName = arr[index]; - console.log(`onDemoSelected: load file ${fileName}, config[ ${index} ]`); - this.loadFromUrl(fileName); - return; - } - - const DEMO_URL = 'https://daentjnvnffrh.cloudfront.net/demo/'; - - let fileName = - DEMO_URL + - [ - '01_lungs/20101108.ktx', - '02_brain_set/brain256.ktx', - '03_grandmother_gm3/gm3_512_512_165.nii', - '04_woman_pelvis/file_list.txt', - '05_lungs_00cba/file_list.txt', - '06_ct_256/ct_256_256_256.ktx', - '07_lungs_256/lungs_256_256_256.ktx', - '08_brain_with_roi/set_intn.hdr', - ][index] || console.log(`onDemoSelected. not implemented for index = ${index}`); - - if (fileName === '04_woman_pelvis/file_list.txt') { - const numUrls = config.demoWomanPelvisUrls.length; - if (numUrls > 0) { - const strPrefix = config.demoWomanPelvisPrefix; - // console.log(`config. prefix = ${strPrefix}`); - const arrFileNames = []; - for (let i = 0; i < numUrls; i++) { - const strFn = config.demoWomanPelvisUrls[i]; - const url = `${strPrefix}${strFn}`; - arrFileNames.push(url); - } - const store = this.props; - const loader = new LoaderUrlDicom(store); - const GOOGLE_HEADER = false; - loader.loadFromUrlArray(arrFileNames, GOOGLE_HEADER); - return; - } - } - if (fileName === '05_lungs_00cba/file_list.txt') { - const numUrls = config.demoLungsUrls.length; - if (numUrls > 0) { - const strPrefix = config.demoLungsPrefix; - const arrFileNames = []; - for (let i = 0; i < numUrls; i++) { - const strFn = config.demoLungsUrls[i]; - const url = `${strPrefix}${strFn}`; - arrFileNames.push(url); - } - const store = this.props; - const loader = new LoaderUrlDicom(store); - const GOOGLE_HEADER = false; - loader.loadFromUrlArray(arrFileNames, GOOGLE_HEADER); - return; - } - } - if (fileName.length > 0) { - console.log(`onDemoSelected. enc = ${fileName}`); - this.loadFromUrl(fileName); - } - } - - // - shouldComponentUpdate() { - return true; - } - - onModalDicomSeriesHide() { - const arrEmpty = []; - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: arrEmpty }); - } - - onDicomSerieSelected(indexSelected) { - const store = this.props; - const series = store.dicomSeries; - const serieSelected = series[indexSelected]; - const hash = serieSelected.m_hash; - this.m_loader.createVolumeFromSlices(this.m_volumeSet, indexSelected, hash); - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - console.log(`onFileContentReadMultipleDicom read all ${this.m_numFiles} files`); - - // clear modal - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: [] }); - } - - // - onModalWindowCWHide(needShow) { - this.setState({ showModalWindowCW: false }); - if (needShow) { - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - // setup dicom series (volumes info) for global store: select volume later - const store = this.props; - let series = null; - if (this.m_loader !== undefined) { - series = this.m_loader.m_slicesVolume.getSeries(); - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: series }); - } - // update graphics 2d window - const gra = store.graphics2d; - if (gra !== null) { - gra.forceUpdate(); - } - } - } - - saveFileNameToLocalStorage(fileName) { - const RECENT_FILES_KEY = 'recentFiles'; - const arrRecentFiles = JSON.parse(localStorage.getItem(RECENT_FILES_KEY)) || []; - - if (!arrRecentFiles.find((recentFile) => recentFile.fileName === fileName)) { - // Set only unique file name - const limitedRecentFiles = arrRecentFiles.slice(0, 2); - localStorage.setItem(RECENT_FILES_KEY, JSON.stringify([{ fileName: fileName, timestamp: Date.now() }, ...limitedRecentFiles])); - } - } - - // - // invoked after render - // - componentDidMount() { - this.m_fileSelector = this.buildFileSelector(); - const fileNameOnLoad = this.m_fileNameOnLoad; - // console.log(`UiOpenMenu. componentDidMount. fnonl = ${fileNameOnLoad}`); - if (fileNameOnLoad.length > 0 && this.state.onLoadCounter > 0) { - this.setState({ onLoadCounter: 0 }); - const TIMEOUT_MS = 50; - // debugger; - setTimeout(this.loadFromUrl(fileNameOnLoad), TIMEOUT_MS); - } - } -} - -export default FileReader; diff --git a/src/engine/loaders/LoaderHdr.js b/src/engine/loaders/LoaderHdr.js index 5afb751e..35a5856f 100644 --- a/src/engine/loaders/LoaderHdr.js +++ b/src/engine/loaders/LoaderHdr.js @@ -126,7 +126,8 @@ class LoaderHdr { const bufBytes = new Uint8Array(arrBuf); const bufLen = bufBytes.length; const HDR_HEADER_SIZE = 348; - // console.log(`Header buf size === ${bufLen}`); + console.log(`Header buf size === ${bufLen}`); + if (bufLen !== HDR_HEADER_SIZE) { if (callbackComplete) { callbackComplete(LoadResult.WRONG_HEADER_DATA_SIZE, null, 0, null); diff --git a/src/engine/loaders/LoaderNifti.js b/src/engine/loaders/LoaderNifti.js index 11f5fb2e..b6a8288d 100644 --- a/src/engine/loaders/LoaderNifti.js +++ b/src/engine/loaders/LoaderNifti.js @@ -670,19 +670,16 @@ class LoaderNifti { * @param {Function} callbackComplete invoke at the end with final success code */ readFromUrl(volDst, strUrl, callbackProgress, callbackComplete) { - console.log(`LoadedNifti. staring read ${strUrl}`); this.m_fileLoader = new FileLoader(strUrl); - this.m_fileLoader.readFile( - (arrBuf) => { - const okRead = this.readFromBuffer(volDst, arrBuf, callbackProgress, callbackComplete); - return okRead; + + this.m_fileLoader.loadInParts( + (mergedArrBuf) => { + this.readFromBuffer(volDst, mergedArrBuf, callbackProgress, callbackComplete); }, - (errMsg) => { - console.log(`LoadedNifti. Error read file: ${errMsg}`); + () => { callbackComplete(LoadResult.ERROR_CANT_OPEN_URL, null, 0, null); } ); - return true; } // end of readFromUrl } // end class LoaderNifti diff --git a/src/index.js b/src/index.js index 14389d05..882f92b7 100644 --- a/src/index.js +++ b/src/index.js @@ -3,24 +3,16 @@ * SPDX-License-Identifier: Apache-2.0 */ -import React from 'react'; import ReactDOM from 'react-dom'; - import { Provider } from 'react-redux'; - -import { createStore } from 'redux'; - -import rootReducer from './store/Store'; - import App from './App'; +import { store } from './store'; import './index.css'; import './nouislider-custom.css'; const rootElement = document.getElementById('root'); -const store = createStore(rootReducer); - ReactDOM.render( diff --git a/src/react-app-env.d.ts b/src/react-app-env.d.ts new file mode 100644 index 00000000..6431bc5f --- /dev/null +++ b/src/react-app-env.d.ts @@ -0,0 +1 @@ +/// diff --git a/src/store/index.js b/src/store/index.js new file mode 100644 index 00000000..3f42cdc9 --- /dev/null +++ b/src/store/index.js @@ -0,0 +1,4 @@ +import { createStore } from 'redux'; +import rootReducer from './Store'; + +export const store = createStore(rootReducer); diff --git a/src/ui/Button/Button.module.css b/src/ui/Button/Button.module.css index d9e75930..abba5591 100644 --- a/src/ui/Button/Button.module.css +++ b/src/ui/Button/Button.module.css @@ -108,3 +108,23 @@ .button.accent.active svg { fill: var(--black); } + +.button_start_screen { + display: flex; + flex-direction: column; + align-items: center; + z-index: 10; +} + +.button_select_file { + display: flex; + flex-direction: row; + align-items: center; + z-index: 10; + width: 240px; + justify-content: center; +} + +.button_select_file svg { + margin-right: 10px; +} diff --git a/src/ui/FileReaders/DragAndDrop.module.css b/src/ui/FileReaders/DragAndDrop.module.css new file mode 100644 index 00000000..5c60c08d --- /dev/null +++ b/src/ui/FileReaders/DragAndDrop.module.css @@ -0,0 +1,13 @@ +.dropzone { + position: absolute; + height: 100%; + width: 100%; + top: 0; + left: 0; + border-radius: 8px; +} + +.dropzone_active { + border: 2px dashed var(--red); + z-index: 100; +} diff --git a/src/ui/FileReaders/DragAndDropComponent.jsx b/src/ui/FileReaders/DragAndDropComponent.jsx new file mode 100644 index 00000000..daa24e3b --- /dev/null +++ b/src/ui/FileReaders/DragAndDropComponent.jsx @@ -0,0 +1,52 @@ +import { useState, useEffect, useRef } from 'react'; +import css from './DragAndDrop.module.css'; +import { SVG } from '../Button/SVG'; +import UiModalWindowCenterWidth from '../Modals/UiModalWinCW'; +import w3MriViwer from '../../engine/lib/MRIViewer'; +import { MriEvents } from '../../engine/lib/enums'; + +const IMG_DROPZONE_SIZE = 49; + +export const DragAndDropComponent = () => { + const mriViwer = useRef(w3MriViwer).current; // Use useRef here + const [showModalWindowCW, setShowModalWindowCW] = useState(false); + const [isActiveDnd, setIsActiveDnd] = useState(false); + + useEffect(() => { + const handleFileReadSuccess = () => { + setShowModalWindowCW(true); + }; + + mriViwer.events.on(MriEvents.FILE_READ_SUCCESS, handleFileReadSuccess); + + // Cleanup: remove event listener when component unmounts + return () => { + mriViwer.events.off(MriEvents.FILE_READ_SUCCESS, handleFileReadSuccess); + }; + }, [mriViwer]); + + const handleDrop = (e) => { + e.preventDefault(); + setIsActiveDnd(false); + + let files = e.dataTransfer.files; + + if (files.length) { + w3MriViwer.read(files); + } + }; + + return ( + <> + +
e.preventDefault()} + onDragEnter={() => setIsActiveDnd(true)} + onDragLeave={() => setIsActiveDnd(false)} + onDrop={handleDrop} + >
+ {showModalWindowCW && setShowModalWindowCW(false)} />} + + ); +}; diff --git a/src/ui/FileReaders/OpenDemoComponent.jsx b/src/ui/FileReaders/OpenDemoComponent.jsx new file mode 100644 index 00000000..8dde3c93 --- /dev/null +++ b/src/ui/FileReaders/OpenDemoComponent.jsx @@ -0,0 +1,29 @@ +import { useState } from 'react'; +import { UIButton } from '../Button/Button'; +import UiModalDemo from '../Modals/ModalDemo'; +import config from '../../config/config'; +import w3MriViwer from '../../engine/lib/MRIViewer'; + +export const OpenDemoComponent = ({ cx }) => { + const [showModalDemo, setShowModalDemo] = useState(false); + + const onModalDemoOpenShow = () => { + setShowModalDemo(true); + }; + + const onModalDemoOpenHide = () => { + setShowModalDemo(false); + }; + + const onDemoSelected = (index) => { + const fileUrl = config.demoUrls[index]; + w3MriViwer.read(fileUrl); + }; + + return ( + <> + + {showModalDemo && } + + ); +}; diff --git a/src/ui/FileReaders/OpenFromDeviceButton.jsx b/src/ui/FileReaders/OpenFromDeviceButton.jsx new file mode 100644 index 00000000..1cefcf42 --- /dev/null +++ b/src/ui/FileReaders/OpenFromDeviceButton.jsx @@ -0,0 +1,40 @@ +import { useEffect, useState, useRef } from 'react'; +import { UIButton } from '../Button/Button'; +import ModalSelectFile from '../Modals/ModalSelectFile'; + +import { MriEvents } from '../../engine/lib/enums'; +import w3MriViwer from '../../engine/lib/MRIViewer'; + +export const OpenFromDeviceButtonComponent = ({ cx }) => { + const mriViwer = useRef(w3MriViwer).current; + const [showOpenFromDeviceModal, setShowOpenFromDeviceModal] = useState(false); + + useEffect(() => { + const handleFileSelected = () => { + setShowOpenFromDeviceModal(false); + }; + + mriViwer.events.on(MriEvents.FILE_SELECTED, handleFileSelected); + + // Cleanup: remove event listener when component unmounts + return () => { + mriViwer.events.off(MriEvents.FILE_SELECTED, handleFileSelected); + }; + }, []); + + const onHide = () => { + setShowOpenFromDeviceModal(false); + mriViwer.current.fileReader.localFileReader.handleVolumeParametersSetSuccess(); + }; + + const onButtonOpenLocalFileClick = () => { + setShowOpenFromDeviceModal(true); + }; + + return ( + <> + + {showOpenFromDeviceModal && } + + ); +}; diff --git a/src/ui/FileReaders/OpenFromDeviceComponent.jsx b/src/ui/FileReaders/OpenFromDeviceComponent.jsx new file mode 100644 index 00000000..01a79a5c --- /dev/null +++ b/src/ui/FileReaders/OpenFromDeviceComponent.jsx @@ -0,0 +1,58 @@ +import { useEffect, useState, useRef } from 'react'; +import { UIButton } from '../Button/Button'; +import UiModalWindowCenterWidth from '../Modals/UiModalWinCW'; + +import w3MriViwer from '../../engine/lib/MRIViewer'; +import { MriEvents } from '../../engine/lib/enums'; + +export const OpenFromDeviceComponent = ({ cx, text, type }) => { + const mriViwer = useRef(w3MriViwer).current; + const [showModalWindowCW, setShowModalWindowCW] = useState(false); + + useEffect(() => { + const handleFileReadSuccess = () => { + setShowModalWindowCW(true); + }; + + mriViwer.events.on(MriEvents.FILE_READ_SUCCESS, handleFileReadSuccess); + + return () => { + mriViwer.events.off(MriEvents.FILE_READ_SUCCESS, handleFileReadSuccess); + }; + }, []); + + const onFileSelect = (evt) => { + if (evt.target.files.length) { + mriViwer.read(evt.target.files); + } + }; + + const onHide = () => { + setShowModalWindowCW(false); + }; + + const onButtonOpenLocalFileClick = (e) => { + e.preventDefault(); + const fileSelector = document.createElement('input'); + fileSelector.setAttribute('type', 'file'); + fileSelector.setAttribute('hidden', 'true'); + fileSelector.setAttribute('accept', '.txt,.ktx,.dcm,.nii,.hdr,.h,.img,.gz,.zip'); + fileSelector.setAttribute('multiple', 'true'); + + if (type === 'folder') { + fileSelector.setAttribute('webkitdirectory', 'true'); + } + + document.body.appendChild(fileSelector); + + fileSelector.onchange = onFileSelect; + fileSelector.click(); + }; + + return ( + <> + + {showModalWindowCW && } + + ); +}; diff --git a/src/ui/FileReaders/OpenFromURLComponent.jsx b/src/ui/FileReaders/OpenFromURLComponent.jsx new file mode 100644 index 00000000..1c6b9f39 --- /dev/null +++ b/src/ui/FileReaders/OpenFromURLComponent.jsx @@ -0,0 +1,28 @@ +import { useState } from 'react'; +import { UIButton } from '../Button/Button'; +import UIModalUrl from '../Modals/ModalUrl'; +import w3MriViwer from '../../engine/lib/MRIViewer'; + +export const OpenFromURLComponent = ({ cx }) => { + const [showModalUrl, setShowModalUrl] = useState(false); + + const onModalUrlShow = () => { + setShowModalUrl(true); + }; + + const onModalUrlHide = () => { + setShowModalUrl(false); + }; + + const onClickLoadUrl = (url) => { + setShowModalUrl(false); + w3MriViwer.read(url); + }; + + return ( + <> + + {showModalUrl && } + + ); +}; diff --git a/src/ui/FileReaders/index.js b/src/ui/FileReaders/index.js new file mode 100644 index 00000000..dbb3e7a7 --- /dev/null +++ b/src/ui/FileReaders/index.js @@ -0,0 +1,5 @@ +export * from './OpenFromDeviceComponent'; +export * from './OpenFromDeviceButton'; +export * from './DragAndDropComponent'; +export * from './OpenFromURLComponent'; +export * from './OpenDemoComponent'; diff --git a/src/ui/Header/Header.jsx b/src/ui/Header/Header.jsx index c0d0fff8..855f35e3 100644 --- a/src/ui/Header/Header.jsx +++ b/src/ui/Header/Header.jsx @@ -2,10 +2,16 @@ * Copyright 2022 EPAM Systems, Inc. (https://www.epam.com/) * SPDX-License-Identifier: Apache-2.0 */ -import React from 'react'; +import { OpenFromDeviceComponent, OpenFromURLComponent, OpenDemoComponent } from '../FileReaders'; -import UiOpenMenu from '../OpenFile/UiOpenMenu'; +import css from './Header.module.css'; -export function Header({ fileNameOnLoad }) { - return ; +export function Header() { + return ( +
+ + + +
+ ); } diff --git a/src/ui/Header/Header.module.css b/src/ui/Header/Header.module.css new file mode 100644 index 00000000..4aa26156 --- /dev/null +++ b/src/ui/Header/Header.module.css @@ -0,0 +1,3 @@ +.header_button { + font-size: 0; +} diff --git a/src/ui/Main.jsx b/src/ui/Main.jsx index ca9d5dfb..29333e80 100644 --- a/src/ui/Main.jsx +++ b/src/ui/Main.jsx @@ -169,7 +169,7 @@ export const Main = () => { )} {!isFullMode && (
-
+
)} diff --git a/src/ui/Modals/ModalSelectFile.jsx b/src/ui/Modals/ModalSelectFile.jsx new file mode 100644 index 00000000..ace1db20 --- /dev/null +++ b/src/ui/Modals/ModalSelectFile.jsx @@ -0,0 +1,26 @@ +import { Modal, ModalBody, ModalHeader } from './ModalBase'; +import { OpenFromDeviceComponent, DragAndDropComponent } from '../FileReaders'; +import css from './Modals.module.css'; +import buttonCss from '../Button/Button.module.css'; + +export const ModalSelectFile = (props) => { + const { stateVis, onHide } = props; + + return ( + + + +
+ + +
+ + +
+
+ + + ); +}; + +export default ModalSelectFile; diff --git a/src/ui/Modals/ModalUrl.jsx b/src/ui/Modals/ModalUrl.jsx index 5a0d63c7..5fc9def0 100644 --- a/src/ui/Modals/ModalUrl.jsx +++ b/src/ui/Modals/ModalUrl.jsx @@ -1,9 +1,4 @@ -/* - * Copyright 2021 EPAM Systems, Inc. (https://www.epam.com/) - * SPDX-License-Identifier: Apache-2.0 - */ - -import React, { useRef } from 'react'; +import React, { useRef, useState } from 'react'; import { Modal, ModalBody, ModalFooter, ModalHeader } from './ModalBase'; import { UIButton } from '../Button/Button'; @@ -14,23 +9,52 @@ export const ModalUrl = (props) => { const { stateVis, onHide, loadUrl } = props; const inputRef = useRef(); + const [isValid, setIsValid] = useState(true); + const [errorMessage, setErrorMessage] = useState(''); + + const validateUrl = (url) => { + const pattern = new RegExp( + '^(https?:\\/\\/)?' + // protocol + '((([a-z\\d]([a-z\\d-]*[a-z\\d])*)\\.)+[a-z]{2,}|' + // domain name and extension + '((\\d{1,3}\\.){3}\\d{1,3}))' + // OR ip (v4) address + '(\\:\\d+)?' + // port + '(\\/[-a-z\\d%_.~+]*)*' + // path + '(\\?[;&a-z\\d%_.~+=-]*)?' + // query string + '(\\#[-a-z\\d_]*)?$', + 'i' + ); // fragment locator + + return !!pattern.test(url); + }; + + const handleSubmit = () => { + const url = inputRef.current.value; + + if (validateUrl(url)) { + setIsValid(true); + setErrorMessage(''); + loadUrl(url); + } else { + setIsValid(false); + setErrorMessage('Invalid URL. Please enter a valid URL.'); + } + }; + return ( - + -
+
- - {/* TODO: add validation for Url */} + + {!isValid &&

{errorMessage}

}
- loadUrl(inputRef.current.value)} /> + ); diff --git a/src/ui/Modals/Modals.module.css b/src/ui/Modals/Modals.module.css index 0afc6112..8ed6233d 100644 --- a/src/ui/Modals/Modals.module.css +++ b/src/ui/Modals/Modals.module.css @@ -49,7 +49,7 @@ } .footer { - justify-content: flex-end; + justify-content: center; border-top: 1px solid var(--gray); } @@ -107,7 +107,7 @@ margin: 0; padding: 0; display: flex; - align-items: center; + flex-direction: column; } .input { @@ -171,3 +171,38 @@ font-size: 16px; } } +.body_wrapper { + display: flex; + flex-direction: column; + gap: 20px; +} + +.label_text { + margin: 5px 0; +} + +.invalid { + border-color: red; + box-shadow: 0 0 5px red; +} + +.error { + color: red; + font-size: 14px; + margin-top: 5px; +} + +.select_file_wrapper { + display: flex; + flex-direction: column; + align-items: center; + gap: 20xp; + padding: 30px; +} + +.select_file_row { + display: flex; + flex-direction: row; + gap: 15px; + margin-top: 30px; +} diff --git a/src/ui/Modals/UiModalWinCW.jsx b/src/ui/Modals/UiModalWinCW.jsx index 434bc8bb..e18baa44 100644 --- a/src/ui/Modals/UiModalWinCW.jsx +++ b/src/ui/Modals/UiModalWinCW.jsx @@ -10,6 +10,7 @@ import { Nouislider } from '../Nouislider/Nouislider'; import { Modal, ModalBody, ModalFooter, ModalHeader } from './ModalBase'; import { UIButton } from '../Button/Button'; import buttonCss from '../Button/Button.module.css'; +import w3MriViwer from '../../engine/lib/MRIViewer'; const LARGE_NUMBER = 0x3fffffff; const DEFAULT_WIN_MIN = 650 - 2000 / 2; @@ -76,6 +77,9 @@ class UiModalWindowCenterWidth extends React.Component { const hashCode = series[i].m_hash; loaderDicom.createVolumeFromSlices(volSet, i, hashCode); } + + w3MriViwer.fileReader.localFileReader.localFileReader.handleVolumeParametersSetSuccess(); + this.props.onHide && this.props.onHide(true); } @@ -267,7 +271,7 @@ class UiModalWindowCenterWidth extends React.Component { } // end render preview onSliderWindowRange(value) { - this.m_updateEnable = false; + this.m_updateEnable = true; const [min, max] = value; this.setState({ windowMin: min }); this.setState({ windowMax: max }); diff --git a/src/ui/OpenFile/UiOpenMenu.jsx b/src/ui/OpenFile/UiOpenMenu.jsx deleted file mode 100644 index ba41436e..00000000 --- a/src/ui/OpenFile/UiOpenMenu.jsx +++ /dev/null @@ -1,981 +0,0 @@ -/* - * Copyright 2022 EPAM Systems, Inc. (https://www.epam.com/) - * SPDX-License-Identifier: Apache-2.0 - */ - -// import { gzip, ungzip } from 'node-gzip'; -// import UiModalDicomSeries from './UiModalDicomSeries'; - -import React from 'react'; -import { connect } from 'react-redux'; -import UiModalDemo from '../Modals/ModalDemo'; -import UIModalUrl from '../Modals/ModalUrl'; -import UiModalWindowCenterWidth from '../Modals/UiModalWinCW'; -import { UIButton } from '../Button/Button'; -import css from './UiOpenMenu.module.css'; -import { UiSaveMenu } from './UiSaveMenu'; -import { UiReportMenu } from './UiReportMenu'; -import { Tooltip } from '../Tooltip/Tooltip'; -import { Container } from '../Layout/Container'; -import FileReader from '../../engine/loaders/FileReader'; -import StoreActionType from '../../store/ActionTypes'; - -/** Need to have demo menu */ -const NEED_DEMO_MENU = true; - -/** deep artificially fix volume texture size to 4 * N */ -const NEED_TEXTURE_SIZE_4X = true; - -// use daikon parser for Dicom (*dcm) file loading -const READ_DICOM_VIA_DAIKON = true; - -class UiOpenMenu extends FileReader { - constructor(props) { - super(props); - this.onButtonOpenLocalFileClick = this.onButtonOpenLocalFileClick.bind(this); - this.handleFileSelected = this.handleFileSelected.bind(this); - this.onFileContentReadSingleFile = this.onFileContentReadSingleFile.bind(this); - this.onFileContentReadMultipleDicom = this.onFileContentReadMultipleDicom.bind(this); - this.onFileContentReadMultipleHdr = this.onFileContentReadMultipleHdr.bind(this); - this.setErrorString = this.setErrorString.bind(this); - - this.onModalUrlShow = this.onModalUrlShow.bind(this); - this.onModalUrlHide = this.onModalUrlHide.bind(this); - this.onClickLoadUrl = this.onClickLoadUrl.bind(this); - this.callbackReadCompleteUrlKtxNii = this.callbackReadCompleteUrlKtxNii.bind(this); - - this.onModalDemoOpenShow = this.onModalDemoOpenShow.bind(this); - this.onModalDemoOpenHide = this.onModalDemoOpenHide.bind(this); - this.onDemoSelected = this.onDemoSelected.bind(this); - - this.onModalWindowCWHide = this.onModalWindowCWHide.bind(this); - - this.onModalGoogleShow = this.onModalGoogleShow.bind(this); - this.onModalGoogleHide = this.onModalGoogleHide.bind(this); - this.onGoogleSelected = this.onGoogleSelected.bind(this); - - this.onModalDicomSeriesHide = this.onModalDicomSeriesHide.bind(this); - this.onDicomSerieSelected = this.onDicomSerieSelected.bind(this); - - this.callbackReadProgress = this.callbackReadProgress.bind(this); - this.callbackReadComplete = this.callbackReadComplete.bind(this); - this.callbackReadSingleDicomComplete = this.callbackReadSingleDicomComplete.bind(this); - this.callbackReadMultipleComplete = this.callbackReadMultipleComplete.bind(this); - this.callbackCompleteMultipleDicom = this.callbackCompleteMultipleDicom.bind(this); - - this.m_fileNameOnLoad = ''; - this.m_fileName = ''; - this.m_fileIndex = 0; - this.m_fileReader = null; - this.m_fileSize = null; - this.state = { - showModalUrl: false, - showModalDemo: false, - showModalGoogle: false, - showModalWindowCW: false, - onLoadCounter: 1, - }; - this.m_volumeSet = null; - this.m_volumeRoi = null; - this.m_updateEnable = true; - this.roiMode = false; - } - - finalizeSuccessLoadedVolume(volSet, fileNameIn) { - const store = this.props; - - console.assert(volSet instanceof VolumeSet, 'finalizeSuccessLoadedVolume: should be VolumeSet'); - console.assert(volSet.getNumVolumes() >= 1, 'finalizeSuccessLoadedVolume: should be more or 1 volume'); - const indexVol = 0; - - const vol = volSet.getVolume(indexVol); - console.assert(vol !== null, 'finalizeSuccessLoadedVolume: should be non zero volume'); - - if (vol.m_dataArray !== null) { - console.log(`success loaded volume from ${fileNameIn}`); - if (NEED_TEXTURE_SIZE_4X) { - vol.makeDimensions4x(); - } - // invoke notification - - // send update (repaint) if was loaded prev model - if (store.isLoaded) { - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - } - - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: volSet }); - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: true }); - store.dispatch({ type: StoreActionType.SET_FILENAME, fileName: fileNameIn }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: [] }); - store.dispatch({ type: StoreActionType.SET_MODE_VIEW, viewMode: ViewMode.VIEW_2D }); - store.dispatch({ type: StoreActionType.SET_MODE_3D, mode3d: Modes3d.RAYCAST }); - store.dispatch({ type: StoreActionType.SET_SPINNER, spinner: false }); - } - } - - setErrorString(strErr) { - const store = this.props; - const arrErrors = []; - arrErrors.push(strErr); - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: arrErrors }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volume: null }); - } - - finalizeFailedLoadedVolume(volSet, fileNameIn, arrErrors) { - console.assert(arrErrors !== undefined); - // invoke notification - const store = this.props; - store.dispatch({ type: StoreActionType.SET_IS_LOADED, isLoaded: false }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volume: null }); - store.dispatch({ type: StoreActionType.SET_ERR_ARRAY, arrErrors: arrErrors }); - store.dispatch({ type: StoreActionType.SET_FILENAME, fileName: fileNameIn }); - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - } - - callbackReadProgress(ratio01) { - // console.log(`callbackReadProgress = ${ratio01}`); - const ratioPrc = Math.floor(ratio01 * 100); - const store = this.props; - console.log('ratioPrc ===================> ' + ratioPrc); - console.log('ratio01 ===================> ' + ratio01); - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: ratioPrc, - }); - store.dispatch({ - type: StoreActionType.SET_PROGRESS_INFO, - titleProgressBar: 'Loading file...', - }); - if (ratioPrc >= 99) { - // console.log(`callbackReadProgress. hide on = ${ratio01}`); - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - store.dispatch({ - type: StoreActionType.SET_PROGRESS_INFO, - titleProgressBar: 'Loading file...', - }); - } else { - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: ratioPrc, - }); - store.dispatch({ - type: StoreActionType.SET_PROGRESS_INFO, - titleProgressBar: 'Loading file...', - }); - } - } // callback progress - - callbackReadComplete(errCode) { - if (errCode === undefined) { - console.log('callbackReadComplete. should be errCode'); - } else { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - const store = this.props; - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - store.dispatch({ - type: StoreActionType.SET_PROGRESS_INFO, - titleProgressBar: 'The file has been uploaded', - }); - if (errCode === LoadResult.SUCCESS) { - // console.log('callbackReadComplete finished OK'); - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - } else { - console.log(`callbackReadComplete failed! reading ${this.m_fileName} file`); - const arrErr = []; - const strErr = LoadResult.getResultString(errCode); - arrErr.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErr); - } - } - - callbackReadSingleDicomComplete(errCode) { - if (errCode === LoadResult.SUCCESS) { - const store = this.props; - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: this.m_volumeSet }); - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - - // show modal: select window center, width - this.setState({ showModalWindowCW: true }); - return; // do nothing immediately after: wait for dialog - } - this.callbackReadComplete(errCode); - } - - callbackReadMultipleComplete(errCode) { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - - onFileContentReadSingleFile() { - let strContent = this.m_fileReader.result; - this.onFileReadSingleBuffer(strContent); - console.log(this.onFileReadSingleBuffer(strContent)); - } - - // - // daikon read individual slice from file buffer (one from multiple files) - // strContent is ArrayBuffer - readSliceDicomViaDaikon(fileIndex, fileName, ratioLoad, strContent) { - const loaderDaikon = new LoaderDcmDaikon(); - return loaderDaikon.readSlice(this.m_loader, fileIndex, fileName, strContent); - } // end read single slice via daikon - - // - // based on local file read - // read from string content in this.m_fileReader.result - // - onFileReadSingleBuffer(strContent) { - // daikon read - // strContent is ArrayBuffer - if ((this.m_fileName.endsWith('.dcm') || this.m_fileName.endsWith('.DCM')) && READ_DICOM_VIA_DAIKON) { - const loaderDcm = new LoaderDcmDaikon(); - const store = this.props; - const fileIndex = this.m_fileIndex; - const fileName = this.m_fileName; - this.m_loader = new LoaderDicom(1); - const ret = loaderDcm.readSingleSlice(store, this.m_loader, fileIndex, fileName, strContent); - this.callbackReadSingleDicomComplete(ret); - return ret; - } - - console.log('UiOpenMenu. onFileReadSingleBuffer ...'); - // console.log(`file content = ${strContent.substring(0, 64)}`); - // console.log(`onFileContentRead. type = ${typeof strContent}`); - this.m_volumeSet = new VolumeSet(); - // add empty [0]-th volume in set to read single file - this.m_volumeSet.addVolume(new Volume()); - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadComplete; - const callbackCompleteSingleDicom = this.callbackReadSingleDicomComplete; - - if (this.m_fileName.endsWith('.ktx') || this.m_fileName.endsWith('.KTX')) { - // if read ktx - // debugger; - this.m_volumeSet.readFromKtx(strContent, callbackProgress, callbackComplete); - } else if (this.m_fileName.endsWith('.nii') || this.m_fileName.endsWith('.NII')) { - this.m_volumeSet.readFromNifti(strContent, callbackProgress, callbackComplete); - } else if (this.m_fileName.endsWith('.dcm') || this.m_fileName.endsWith('.DCM')) { - this.m_loader = new LoaderDicom(); - this.m_loader.m_zDim = 1; - this.m_loader.m_numFiles = 1; - this.m_volumeSet.readFromDicom(this.m_loader, strContent, callbackProgress, callbackCompleteSingleDicom); - // save dicomInfo to store - const dicomInfo = this.m_loader.m_dicomInfo; - const sliceInfo = dicomInfo.m_sliceInfo[0]; - sliceInfo.m_fileName = this.m_fileName; - sliceInfo.m_sliceName = 'Slice 0'; - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_INFO, dicomInfo: dicomInfo }); - } else if (this.m_fileName.endsWith('.hdr') || this.m_fileName.endsWith('.HDR')) { - // readOk = vol.readFromHdrHeader(strContent, callbackProgress, callbackComplete); - console.log(`cant read single hdr file: ${this.m_fileName}`); - // readStatus = LoadResult.BAD_HEADER; - } else if (this.m_fileName.endsWith('.img') || this.m_fileName.endsWith('.IMG')) { - // readOk = vol.readFromHdrImage(strContent, callbackProgress, callbackComplete); - console.log(`cant read single img file: ${this.m_fileName}`); - // readStatus = LoadResult.BAD_HEADER; - } else { - console.log(`onFileContentReadSingleFile: unknown file type: ${this.m_fileName}`); - } - } - - // - // read hdr/img. content is in this.m_fileReader.result - // - onFileContentReadMultipleHdr() { - const VALID_NUM_FILES_2 = 2; - const VALID_NUM_FILES_4 = 4; - if (this.m_numFiles !== VALID_NUM_FILES_2 && this.m_numFiles !== VALID_NUM_FILES_4) { - console.log(`onFileContentReadMultipleHdr: can read ${VALID_NUM_FILES_2} or ${VALID_NUM_FILES_4} files for multiple hdr loader`); - return; - } - - const isHdr = this.m_fileName.endsWith('hdr') || this.m_fileName.endsWith('HDR'); - console.log(`onFileContentReadMultipleHdr: read file ${this.m_fileName}. Ratio=${this.m_fileIndex} / ${this.m_numFiles}`); - this.m_fileIndex++; - const ratioLoad = this.m_fileIndex / this.m_numFiles; - const strContent = this.m_fileReader.result; - // const lenContent = strContent.length; - - if (this.m_fileIndex <= 1) { - // add single volume to set - if (this.m_volumeSet.getNumVolumes() === 0) { - this.m_volumeSet.addVolume(new Volume()); - } - this.callbackReadProgress(0.0); - } - - if (this.m_numFiles === VALID_NUM_FILES_4 && this.m_volumeRoi === null) { - this.m_volumeRoi = new Volume(); - } - - const callbackProgress = null; - const callbackComplete = null; - - const regExpFileName = /([\S]+)\.[\S]+/; - const fnameArr = regExpFileName.exec(this.m_fileName); - const numFN = fnameArr.length; - let detectedMask = false; - let detectedIntensity = false; - if (numFN === 2) { - const fname = fnameArr[1]; - if (fname.endsWith('_mask')) { - detectedMask = true; - } - if (fname.endsWith('_intn')) { - detectedIntensity = true; - } - } - let volDst = this.m_volumeSet.getVolume(0); - if (this.m_fileIndex > VALID_NUM_FILES_2) { - volDst = this.m_volumeRoi; - } - if (detectedIntensity) { - volDst = this.m_volumeSet.getVolume(0); - } - if (detectedMask) { - volDst = this.m_volumeRoi; - this.roiMode = true; - // console.log('mask vol by name'); - if (this.m_numFiles !== VALID_NUM_FILES_4) { - console.log('You need to load 4 files, if one of them has _mask in name'); - return; - } - } - - // read header or image from src files - let readOk; - if (isHdr) { - readOk = this.m_loader.readFromBufferHeader(volDst, strContent, callbackProgress, callbackComplete); - } else { - readOk = this.m_loader.readFromBufferImage(volDst, strContent, callbackProgress, callbackComplete); - } - - // create final volume from readed data - volDst = this.m_volumeSet.getVolume(0); - if (readOk && this.m_fileIndex === this.m_numFiles) { - let ok = false; - if (this.m_numFiles === VALID_NUM_FILES_2) { - ok = this.m_loader.createVolumeFromHeaderAndImage(volDst); - } else if (this.m_numFiles === VALID_NUM_FILES_4) { - // intensity data 16 -> 8 bpp - ok = this.m_loader.createVolumeFromHeaderAndImage(volDst); - if (ok) { - // mix 8 bpp intensity and roi pixels - ok = this.m_loader.createRoiVolumeFromHeaderAndImage(volDst, this.m_volumeRoi); - } - } - this.callbackReadProgress(1.0); - if (!ok) { - this.callbackReadComplete(LoadResult.FAIL); - } else { - this.callbackReadComplete(LoadResult.SUCCESS); - } - } - - // read again new file - if (this.m_fileIndex < this.m_numFiles) { - this.callbackReadProgress(ratioLoad); - this.m_fileReader.onloadend = this.onFileContentReadMultipleHdr; - const file = this.m_files[this.m_fileIndex]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } - } // on multuple hdr - - // on complete read multuple dicom - callbackCompleteMultipleDicom(errCode) { - if (errCode !== LoadResult.SUCCESS) { - const strErr = LoadResult.getResultString(errCode); - this.setErrorString(strErr); - } - } - - // - // read from string content in this.m_fileReader.result - // - onFileContentReadMultipleDicom() { - // console.log('UiOpenMenu. onFileContentReadMultipleDicom ...'); - const strContent = this.m_fileReader.result; - this.m_fileIndex++; - const ratioLoad = this.m_fileIndex / this.m_numFiles; - // console.log(`onFileContentReadMultipleDicom. r = ${ratioLoad}`); - const callbackProgress = null; - // const callbackComplete = this.callbackReadMultipleComplete; - - if (this.m_fileIndex <= 1) { - // add new volume to volume set on the first slice - const vol = new Volume(); - this.m_volumeSet.addVolume(vol); - // init progress on the first file loading - this.callbackReadProgress(0.0); - } - - // FIX 05/06/2020: read multiple dicom callback complete - // can be invoked with error code - const callbackColmpleteVoid = this.callbackCompleteMultipleDicom; - - let readStatus; - - if (READ_DICOM_VIA_DAIKON) { - readStatus = this.readSliceDicomViaDaikon(this.m_fileIndex - 1, this.m_fileName, ratioLoad, strContent); - } else { - readStatus = this.m_volumeSet.readSingleSliceFromDicom( - this.m_loader, - this.m_fileIndex - 1, - this.m_fileName, - ratioLoad, - strContent, - callbackProgress, - callbackColmpleteVoid - ); - } - - if (readStatus !== LoadResult.SUCCESS) { - console.log('onFileContentReadMultipleDicom. Error read individual file'); - } - if (readStatus === LoadResult.SUCCESS && this.m_fileIndex === this.m_numFiles) { - // setup global vars - const store = this.props; - store.dispatch({ type: StoreActionType.SET_VOLUME_INDEX, volumeIndex: 0 }); - store.dispatch({ type: StoreActionType.SET_VOLUME_SET, volumeSet: this.m_volumeSet }); - - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - // stop show loading progress bar - this.callbackReadProgress(1.0); - this.callbackReadComplete(LoadResult.SUCCESS); - - // show modal: select window center, width - this.setState({ showModalWindowCW: true }); - return; // do nothing immediately after: wait for dialog - /* - const numSeries = this.m_loader.m_slicesVolume.m_series.length; - console.log(`num series = ${numSeries}`); - const series = this.m_loader.m_slicesVolume.getSeries(); - // save loaded series description to store - if (numSeries === 1) { - const indexSerie = 0; - const hash = series[indexSerie].m_hash; - this.m_loader.createVolumeFromSlices(this.m_volumeSet, indexSerie, hash); - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - console.log(`onFileContentReadMultipleDicom read all ${this.m_numFiles} files`); - } else { - // now we have loaded more then 1 series from dicon files set - for (let i = 0; i < numSeries; i++) { - const hashCode = series[i].m_hash; - this.m_loader.createVolumeFromSlices(this.m_volumeSet, i, hashCode); - } - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - console.log(`onFileContentReadMultipleDicom create ${numSeries} volumes for ${this.m_numFiles} files`); - // setup dicom series (volumes info) for global store: select volume later - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: series }); - } - this.callbackReadProgress(1.0); - this.callbackReadComplete(LoadResult.SUCCESS); - */ - } // end if successfully read all files (multiple dicom read) - // read again new file - if (readStatus === LoadResult.SUCCESS) { - if (this.m_fileIndex < this.m_numFiles) { - // print console loading progress - const NUM_PARTS_REPORT = 16; - const STEP_PROGRESS = Math.floor(this.m_numFiles / NUM_PARTS_REPORT); - if (this.m_fileIndex % STEP_PROGRESS === 0) { - // console.log(`onFileContentReadMultipleDicom. Loading completed = ${ratioLoad}`); - this.callbackReadProgress(ratioLoad); - } - - this.m_fileReader.onloadend = this.onFileContentReadMultipleDicom; - const file = this.m_files[this.m_fileIndex]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } // if still need files - } else { - const arrErr = []; - const strErr = this.props.arrErrors[0]; - arrErr.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErr); - } // if result is not success - } - - // - // Perform open file after it selected in dialog - handleFileSelected(evt) { - if (evt.target.files !== undefined) { - let numFiles = evt.target.files.length; - console.log(`UiOpenMenu. Trying to open ${numFiles} files`); - if (numFiles <= 0) { - return; - } - console.log(`UiOpenMenu. handleFileSelected. file[0] = ${evt.target.files[0].name}`); - // debugger; - console.log('evt = ' + evt.target.files); - this.m_volumeSet = new VolumeSet(); - if (numFiles === 1) { - const file = evt.target.files[0]; - this.m_fileName = file.name; - this.m_fileSize = file.size; - console.log('this.m_fileSize ->>>>>>>>>>>>>> ' + this.m_fileSize); - console.log('evt.loaded ->>>>>>>>>>>>>> ' + evt.loaded); - console.log('evt.total ->>>>>>>>>>>>>> ' + evt.total); - - // read gzip - if (this.m_fileName.endsWith('.gz')) { - // here will be result raw buffer - this.m_unzippedBuffer = null; - - // remove last 3 chars form file name string - this.m_fileName = this.m_fileName.slice(0, -3); - - const store = this.props; - - const gunzip = zlib.createGunzip(); - createReadStream(file).pipe(gunzip); - gunzip.on('data', (data) => { - if (this.m_unzippedBuffer == null) { - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - } else { - const readSize = this.m_unzippedBuffer.length; - const allSize = file.size; - const KOEF_DEFLATE = 0.28; - const ratio100 = Math.floor((readSize * 100.0 * KOEF_DEFLATE) / allSize); - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: ratio100 }); - } - - // read the data chunk-by-chunk - // data is Uint8Array - const dataSize = data.length; - if (this.m_unzippedBuffer == null) { - // create buffer from first ungzipped data chunk - this.m_unzippedBuffer = new Uint8Array(dataSize); - this.m_unzippedBuffer.set(data, 0); - } else { - // append buffer from 2,3,... ungzipped data chunks - const dataCollectedSize = this.m_unzippedBuffer.length; - const arrNew = new Uint8Array(dataCollectedSize + dataSize); - arrNew.set(this.m_unzippedBuffer, 0); - arrNew.set(data, dataCollectedSize); - this.m_unzippedBuffer = arrNew; - } - }); - gunzip.on('close', () => { - console.log('gzip on close'); - }); - - gunzip.on('end', () => { - store.dispatch({ type: StoreActionType.SET_PROGRESS, progress: 0 }); - // now all chunks are read. Need to check raw ungzipped buffer - const sizeBuffer = this.m_unzippedBuffer.length; - if (sizeBuffer < 128) { - console.log('Too small ungzipped data: ' + sizeBuffer.toString() + " bytes. can't read volume data"); - return; - } - // check correct nifti header after extract raw bytes from gzip - const headTemplate = [0x00, 0x00, 0x01, 0x5c]; - let correctHead0 = true; - for (let i = 0; i < 4; i++) { - if (this.m_unzippedBuffer[i] !== headTemplate[i]) { - correctHead0 = false; - } - } - let correctHead1 = true; - for (let i = 0; i < 4; i++) { - if (this.m_unzippedBuffer[i] !== headTemplate[3 - i]) { - correctHead1 = false; - } - } - if (!correctHead0 && !correctHead1) { - console.log('Wrong nifi header, cant read gzipped file'); - return; - } - console.log('ungzip done with ' + sizeBuffer.toString() + ' bytes. Correct nifti header detected'); - // process raw data buffer - this.onFileReadSingleBuffer(this.m_unzippedBuffer); - }); - return; - } // if gzipped file - this.m_fileReader = new FileReader(); - const progressHandler = ({ loaded, total }) => { - // debugger; - this.callbackReadProgress(loaded / total); - }; - this.m_fileReader.addEventListener('progress', progressHandler); - this.m_fileReader.onloadend = this.onFileContentReadSingleFile; - this.m_fileReader.readAsArrayBuffer(file); - } else { - // not single file was open - this.m_files = Array.from(evt.target.files); // FileList -> Array - this.m_fileIndex = 0; - this.m_numFiles = numFiles; - this.m_fileReader = new FileReader(); - // if multiple files, create Dicom loader - this.m_loader = null; - if (evt.target.files[0].name.endsWith('.dcm')) { - // remove non-dcm files - let numFilesNew = 0; - for (let i = numFiles - 1; i >= 0; i--) { - if (this.m_files[i].name.endsWith('.dcm')) { - numFilesNew++; - } else { - this.m_files.splice(i, 1); - } - } - numFiles = numFilesNew; - this.m_numFiles = numFilesNew; - - this.m_loader = new LoaderDicom(numFiles); - const dicomInfo = this.m_loader.m_dicomInfo; - - // save dicomInfo to store - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_INFO, dicomInfo: dicomInfo }); - - // save dicom loader to store - store.dispatch({ type: StoreActionType.SET_LOADER_DICOM, loaderDicom: this.m_loader }); - - this.m_fileReader.onloadend = this.onFileContentReadMultipleDicom; - } else if (evt.target.files[0].name.endsWith('.hdr') || evt.target.files[0].name.endsWith('.img')) { - this.m_loader = new LoaderHdr(numFiles); - this.m_fileReader.onloadend = this.onFileContentReadMultipleHdr; - } - - //const vol = new Volume(); - //this.m_volume = vol; - this.m_volumeRoi = null; - - const file = evt.target.files[0]; - this.m_fileName = file.name; - this.m_fileReader.readAsArrayBuffer(file); - } // if num files > 1 - } // if event is not empty - } - - buildFileSelector() { - const fileSelector = document.createElement('input'); - fileSelector.setAttribute('type', 'file'); - fileSelector.setAttribute('hidden', 'true'); - fileSelector.setAttribute('accept', '.txt,.ktx,.dcm,.nii,.hdr,.h,.img,.gz'); - fileSelector.setAttribute('multiple', 'true'); - document.body.appendChild(fileSelector); - fileSelector.onchange = this.handleFileSelected; - return fileSelector; - } - - onButtonOpenLocalFileClick(evt) { - // console.log('onButtonLocalFile started'); - // debugger; - evt.preventDefault(); - this.m_fileSelector.click(); - } - - // - onModalUrlShow() { - this.setState({ showModalUrl: true }); - } - - onModalUrlHide() { - console.log(`onModalUrlHide`); - this.setState({ showModalUrl: false }); - } - - callbackReadCompleteUrlKtxNii(codeResult) { - if (codeResult !== LoadResult.SUCCESS) { - console.log(`onCompleteFromUrlKtx. Bad result: ${codeResult}`); - - const arrErrors = []; - const strErr = LoadResult.getResultString(codeResult); - arrErrors.push(strErr); - this.finalizeFailedLoadedVolume(this.m_volumeSet, this.m_fileName, arrErrors); - } else { - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - this.callbackReadComplete(LoadResult.SUCCESS, null, 0, null); - } - } - - loadFromUrl(strUrl) { - if (FileTools.isValidUrl(strUrl)) { - this.m_url = strUrl; - - this.m_fileName = FileTools.getFileNameFromUrl(strUrl); - this.m_volumeSet = new VolumeSet(); - this.m_volumeSet.addVolume(new Volume()); - - if (strUrl.endsWith('.ktx')) { - // debugger; - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - // debugger; - this.m_volumeSet.readFromKtxUrl(strUrl, callbackProgress, callbackComplete); - // if KTX - } else if (strUrl.endsWith('.nii')) { - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromNiiUrl(strUrl, callbackProgress, callbackComplete); - // if NII (Nifti format) - } else if (strUrl.endsWith('.dcm')) { - if (READ_DICOM_VIA_DAIKON) { - const loaderUrlDcm = new LoaderDcmUrlDaikon(); - return loaderUrlDcm.readFromUrl(this.m_volumeSet, strUrl, this.callbackReadCompleteUrlKtxNii, this.callbackReadProgress); - } - - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromDicomUrl(strUrl, callbackProgress, callbackComplete); - // if Dicom - } else if (strUrl.endsWith('.hdr')) { - const callbackProgress = this.callbackReadProgress; - const callbackComplete = this.callbackReadCompleteUrlKtxNii; - this.callbackReadProgress(0.0); - this.m_volumeSet.readFromHdrUrl(strUrl, callbackProgress, callbackComplete); - // if Hdr - } else { - console.log(`UiOpenMenu. Unknown file type from URL = ${strUrl}`); - } - } else { - const strErr = `UiOpenMenu. Bad URL = ${strUrl}`; - console.log(strErr); - this.setErrorString(strErr); - } - } - - onClickLoadUrl(strUrl) { - this.setState({ showModalUrl: false }); - console.log(`onClickLoadUrl with strUrl = ${strUrl}`); - this.loadFromUrl(strUrl); - } - - // - onModalDemoOpenShow() { - this.setState({ showModalDemo: true }); - } - - onModalDemoOpenHide() { - this.setState({ showModalDemo: false }); - } - - // - arrNumToStr(arrNums) { - const numLet = arrNums.length; - let str = ''; - for (let i = 0; i < numLet; i++) { - const n = arrNums[i]; - str = str.concat(String.fromCharCode(n)); - } - return str; - } - - onModalGoogleShow() { - this.setState({ showModalGoogle: true }); - } - - onModalGoogleHide() { - this.setState({ showModalGoogle: false }); - } - - onGoogleSelected(index) { - // perform action on click i-th item in Google cloud menu . Or remove this menu completely - console.log(`onGoogleSelected(${index}) ... `); - } - - onDemoSelected(index) { - const store = this.props; - store.dispatch({ - type: StoreActionType.SET_PROGRESS, - progress: 0, - }); - store.dispatch({ - type: StoreActionType.SET_PROGRESS_INFO, - titleProgressBar: 'Loading demo file, please, wait...', - }); - store.dispatch({ type: StoreActionType.SET_SPINNER, spinner: true }); - const arr = config.demoUrls; - if (arr.length >= 8) { - const fileName = arr[index]; - console.log(`onDemoSelected: load file ${fileName}, config[ ${index} ]`); - this.loadFromUrl(fileName); - return; - } - - const DEMO_URL = 'https://daentjnvnffrh.cloudfront.net/demo/'; - - let fileName = - DEMO_URL + - [ - '01_lungs/20101108.ktx', - '02_brain_set/brain256.ktx', - '03_grandmother_gm3/gm3_512_512_165.nii', - '04_woman_pelvis/file_list.txt', - '05_lungs_00cba/file_list.txt', - '06_ct_256/ct_256_256_256.ktx', - '07_lungs_256/lungs_256_256_256.ktx', - '08_brain_with_roi/set_intn.hdr', - ][index] || console.log(`onDemoSelected. not implemented for index = ${index}`); - - if (fileName === '04_woman_pelvis/file_list.txt') { - const numUrls = config.demoWomanPelvisUrls.length; - if (numUrls > 0) { - const strPrefix = config.demoWomanPelvisPrefix; - // console.log(`config. prefix = ${strPrefix}`); - const arrFileNames = []; - for (let i = 0; i < numUrls; i++) { - const strFn = config.demoWomanPelvisUrls[i]; - const url = `${strPrefix}${strFn}`; - arrFileNames.push(url); - } - const store = this.props; - const loader = new LoaderUrlDicom(store); - const GOOGLE_HEADER = false; - loader.loadFromUrlArray(arrFileNames, GOOGLE_HEADER); - return; - } - } - if (fileName === '05_lungs_00cba/file_list.txt') { - const numUrls = config.demoLungsUrls.length; - if (numUrls > 0) { - const strPrefix = config.demoLungsPrefix; - const arrFileNames = []; - for (let i = 0; i < numUrls; i++) { - const strFn = config.demoLungsUrls[i]; - const url = `${strPrefix}${strFn}`; - arrFileNames.push(url); - } - const store = this.props; - const loader = new LoaderUrlDicom(store); - const GOOGLE_HEADER = false; - loader.loadFromUrlArray(arrFileNames, GOOGLE_HEADER); - return; - } - } - if (fileName.length > 0) { - console.log(`onDemoSelected. enc = ${fileName}`); - this.loadFromUrl(fileName); - } - } - - // - shouldComponentUpdate() { - return true; - } - - onModalDicomSeriesHide() { - const arrEmpty = []; - const store = this.props; - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: arrEmpty }); - } - - onDicomSerieSelected(indexSelected) { - const store = this.props; - const series = store.dicomSeries; - const serieSelected = series[indexSelected]; - const hash = serieSelected.m_hash; - this.m_loader.createVolumeFromSlices(this.m_volumeSet, indexSelected, hash); - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - console.log(`onFileContentReadMultipleDicom read all ${this.m_numFiles} files`); - - // clear modal - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: [] }); - } - - // - onModalWindowCWHide(needShow) { - this.setState({ showModalWindowCW: false }); - if (needShow) { - this.finalizeSuccessLoadedVolume(this.m_volumeSet, this.m_fileName); - // setup dicom series (volumes info) for global store: select volume later - const store = this.props; - let series = null; - if (this.m_loader !== undefined) { - series = this.m_loader.m_slicesVolume.getSeries(); - store.dispatch({ type: StoreActionType.SET_DICOM_SERIES, dicomSeries: series }); - } - // update graphics 2d window - const gra = store.graphics2d; - if (gra !== null) { - gra.forceUpdate(); - } - } - } - - // - // invoked after render - // - componentDidMount() { - this.m_fileSelector = this.buildFileSelector(); - const fileNameOnLoad = this.m_fileNameOnLoad; - // console.log(`UiOpenMenu. componentDidMount. fnonl = ${fileNameOnLoad}`); - if (fileNameOnLoad.length > 0 && this.state.onLoadCounter > 0) { - this.setState({ onLoadCounter: 0 }); - const TIMEOUT_MS = 50; - // debugger; - setTimeout(this.loadFromUrl(fileNameOnLoad), TIMEOUT_MS); - } - } - - // render - render() { - this.m_fileNameOnLoad = this.props.fileNameOnLoad; - - return ( - <> - - - this.onButtonOpenLocalFileClick(evt)} /> - - - - - {NEED_DEMO_MENU && ( - - - - )} - - - {this.props.isLoaded && ( -
- - -
- )} - - {this.state.showModalUrl && ( - - )} - - {this.state.showModalDemo && ( - - )} - {this.state.showModalWindowCW && ( - - )} - - {/**/} - - ); - } -} - -export default connect((store) => store)(UiOpenMenu); diff --git a/src/ui/OpenFile/UiOpenMenu.module.css b/src/ui/OpenFile/UiOpenMenu.module.css deleted file mode 100644 index dc180cf1..00000000 --- a/src/ui/OpenFile/UiOpenMenu.module.css +++ /dev/null @@ -1,20 +0,0 @@ -/* - * Copyright 2022 EPAM Systems, Inc. (https://www.epam.com/) - * SPDX-License-Identifier: Apache-2.0 - */ - -.save-file__area { - height: 50px; - display: flex; - align-content: center; - align-items: center; - justify-content: space-between; -} - -.save-file__area div { - margin-right: 10px; -} - -.filename { - gap: 8px; -} diff --git a/src/ui/StartScreen/SmartContainer/SmartContainer.jsx b/src/ui/StartScreen/SmartContainer/SmartContainer.jsx index 02775944..bafba893 100644 --- a/src/ui/StartScreen/SmartContainer/SmartContainer.jsx +++ b/src/ui/StartScreen/SmartContainer/SmartContainer.jsx @@ -1,99 +1,24 @@ -import React from 'react'; +import { connect } from 'react-redux'; +import { OpenFromDeviceButtonComponent, DragAndDropComponent, OpenFromURLComponent, OpenDemoComponent } from '../../FileReaders'; import RecentlyFiles from '../RecentlyFiles/RecentlyFiles'; -import { UIButton } from '../../Button/Button'; -import { connect } from 'react-redux'; import css from './SmartContainer.module.css'; -import { SVG } from '../../Button/SVG'; -import UiModalDemo from '../../Modals/ModalDemo'; -import UiModalWindowCenterWidth from '../../Modals/UiModalWinCW'; -import FileReader from '../../../engine/loaders/FileReader'; -import { UiSaveMenu } from '../../OpenFile/UiSaveMenu'; -import { UiReportMenu } from '../../OpenFile/UiReportMenu'; -import UIModalUrl from '../../Modals/ModalUrl'; - -const IMG_DROPZONE_SIZE = 49; - -// This component cannot be refactor to FC yet, as we need to extend it from FileReader for now -class SmartContainer extends FileReader { - constructor(props) { - super(props); - this.state = { - isMobile: false, - isActiveDnd: false, - }; - } - - componentDidMount() { - const isMobile = /iPhone|iPad|iPod|Android/i.test(navigator.userAgent); - this.setState({ isMobile }); - } - - handleDrag(e) { - e.preventDefault(); - e.dataTransfer.dropEffect = 'copy'; - if ((e.type === 'dragenter' || e.type === 'dragover') && this.state.isActiveDnd !== true) { - this.setState({ isActiveDnd: true }); - } else if (e.type === 'dragleave' && this.state.isActiveDnd === true) { - this.setState({ isActiveDnd: false }); - } - } - - handleDrop(e) { - e.preventDefault(); - this.setState({ isActiveDnd: false }); - this.handleFileSelected(e); - } - - render() { - const { isMobile } = this.state; - - return ( -
this.handleDrag(e)} - onDragLeave={(e) => this.handleDrag(e)} - onDragOver={(e) => this.handleDrag(e)} - onDrop={(e) => this.handleDrop(e)} - className={this.state.isActiveDnd && !isMobile ? `${css.smart_container} ${css.smart_container__active}` : css.smart_container} - > - {!isMobile && ( - <> - -

Drag and drop files here

-

OR

- - )} -
- this.onButtonOpenLocalFileClick(evt)} - cx={css.button_start_screen} - /> - - -
- - {this.props.isLoaded && ( -
- - -
- )} - - {this.state.showModalUrl && ( - - )} - - {this.state.showModalDemo && ( - - )} - {this.state.showModalWindowCW && ( - - )} +import buttonCss from '../../Button/Button.module.css'; + +const SmartContainer = () => { + return ( +
+ +

Drag and drop files here

+

OR

+
+ + +
- ); - } -} + +
+ ); +}; export default connect((store) => store)(SmartContainer); diff --git a/src/ui/StartScreen/SmartContainer/SmartContainer.module.css b/src/ui/StartScreen/SmartContainer/SmartContainer.module.css index 0dcb2277..2dafc03e 100644 --- a/src/ui/StartScreen/SmartContainer/SmartContainer.module.css +++ b/src/ui/StartScreen/SmartContainer/SmartContainer.module.css @@ -21,16 +21,6 @@ justify-content: space-between; } -.button_start_screen { - display: flex; - flex-direction: column; - align-items: center; -} - -.button_start_screen svg { - margin-bottom: 5px; -} - @media screen and (min-width: 768px) { .smart_container { margin: 0; diff --git a/tsconfig.json b/tsconfig.json new file mode 100644 index 00000000..f006efab --- /dev/null +++ b/tsconfig.json @@ -0,0 +1,29 @@ +{ + "compilerOptions": { + "outDir": "./dist/", + "sourceMap": true, + "noImplicitAny": true, + "module": "esnext", + "target": "es6", + "jsx": "react-jsx", + "lib": [ + "dom", + "dom.iterable", + "esnext" + ], + "allowJs": true, + "skipLibCheck": true, + "esModuleInterop": true, + "allowSyntheticDefaultImports": true, + "strict": true, + "forceConsistentCasingInFileNames": true, + "noFallthroughCasesInSwitch": true, + "moduleResolution": "node", + "resolveJsonModule": true, + "isolatedModules": true, + "noEmit": true + }, + "include": [ + "./src/**/*" + ] +}