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Indigo should send to ketcher different bond size for macromolecules #2653

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AlexeyGirin opened this issue Nov 26, 2024 · 1 comment · Fixed by #2655
Closed

Indigo should send to ketcher different bond size for macromolecules #2653

AlexeyGirin opened this issue Nov 26, 2024 · 1 comment · Fixed by #2655
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@even1024
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Macro-Micro Bucket: Switching between Micro and Macro modes
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Indigo-1.27.0-rc....

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@AlexeyGirin
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AlexeyGirin commented Nov 26, 2024 •
edited by rrodionov91
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Background
During conversion of file formats which does not contain coordinates, indigo set default distance between monomers/atoms equal to 1 angstrom. It works well for molecules but for macromolecules such distance is too short and it leads to monomers overlapping.

Solution
For macromolecules indigo should set default distance between monomers equal to 1.5 angstroms.
@AlexeyGirin AlexeyGirin added Feature Macro-Micro Bucket: Switching between Micro and Macro modes labels Nov 26, 2024
@AlexeyGirin AlexeyGirin added this to the Indigo-1.26.0-rc.3 milestone Nov 26, 2024
@rrodionov91 rrodionov91 changed the title Indigo should send to ketcher different bond size Indigo should send to ketcher different bond size for macromolecules Nov 26, 2024
@even1024 even1024 linked a pull request Nov 26, 2024 that will close this issue
#2654 - Arrow size become 2 bonds length after indigo changed default arrow size to 1 #2655
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@AlexeyGirin
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Verified.

  • Ketcher Version 2.28.0-rc.1 Build at 2024-12-03; 17:04:52
  • Indigo Version 1.27.0-rc.1.0-g8d656a341-wasm32-wasm-clang-19.0.0
  • Chrome Version 131.0.6778.109 (Official Build) (64-bit)
  • Win10

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@even1024 even1024

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Macro-Micro Bucket: Switching between Micro and Macro modes
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Indigo-1.27.0-rc.1 (Current)
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#2654 - Arrow size become 2 bonds length after indigo changed default arrow size to 1 epam/Indigo
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@AlexanderSavelyev @even1024 @rrodionov91 @AlexeyGirin