2025-01-31 11:56:16,027 - MARS-CLI - INFO - ############# Welcome to the MARS CLI. #############
2025-01-31 11:56:16,027 - MARS-CLI - INFO - Running in Development environment
2025-01-31 11:56:16,029 - MARS-CLI - INFO - Starting submission of the ISA JSON to the target repositories: biosamples, ena.
2025-01-31 11:56:16,032 - MARS-CLI - INFO - ISA JSON with investigation 'Bob's investigation' is valid.
2025-01-31 11:56:17,431 - MARS-CLI - INFO - Submission to biosamples was successful. Result:
{'targetRepository': 'biosamples', 'errors': [], 'info': [], 'accessions': [{'value': 'SAMEA131520198', 'path': [{'key': 'investigation'}, {'key': 'studies', 'where': {'key': 'title', 'value': 'Arabidopsis thaliana'}}, {'key': 'materials'}, {'key': 'samples', 'where': {'key': 'name', 'value': 'leaf 1'}}]}, {'value': 'SAMEA131520197', 'path': [{'key': 'investigation'}, {'key': 'studies', 'where': {'key': 'title', 'value': 'Arabidopsis thaliana'}}, {'key': 'materials'}, {'key': 'sources', 'where': {'key': 'name', 'value': 'plant 1'}}]}]}
2025-01-31 11:56:18,079 - MARS-CLI - INFO - ENA_TEST2.R2.fastq.gz already exists and has the same size on the FTP, skipping
2025-01-31 11:56:20,912 - MARS-CLI - INFO - Submission to ena was successful. Result:
{'targetRepository': 'ena', 'errors': [], 'info': [{'message': 'This submission is a TEST submission and will be discarded within 24 hours'}], 'accessions': [{'value': 'ERP168821', 'path': [{'key': 'investigation'}, {'key': 'studies', 'where': {'key': 'title', 'value': 'Arabidopsis thaliana'}}]}, {'value': 'ERX13631345', 'path': [{'key': 'investigation'}, {'key': 'studies', 'where': {'key': 'title', 'value': 'Arabidopsis thaliana'}}, {'key': 'assays', 'where': {'key': '@id', 'value': '#assay/18_20_21'}}, {'key': 'materials'}, {'key': 'otherMaterials', 'where': {'key': '@id', 'value': '#other_material/332'}}]}, {'value': 'ERX13631346', 'path': [{'key': 'investigation'}, {'key': 'studies', 'where': {'key': 'title', 'value': 'Arabidopsis thaliana'}}, {'key': 'assays', 'where': {'key': '@id', 'value': '#assay/18_20_21'}}, {'key': 'materials'}, {'key': 'otherMaterials', 'where': {'key': '@id', 'value': '#other_material/333'}}]}]}