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documentation_developers.html
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<!DOCTYPE html>
<html lang="en">
<head>
<meta charset="utf-8">
<title>Developer Documentation</title>
<meta name="viewport" content="width=device-width, initial-scale=1.0">
<script src="https://code.jquery.com/jquery-2.1.1.min.js"></script>
<link rel="stylesheet" href="https://netdna.bootstrapcdn.com/bootstrap/3.3.0/css/bootstrap.min.css">
<script src="https://netdna.bootstrapcdn.com/bootstrap/3.3.0/js/bootstrap.min.js"></script>
<link href="css/main.bootstrap.css" rel="stylesheet">
</head>
<body>
<div class="narrow white">
<div class="container">
<div class="row centering narrow">
<h1>Developer Links</h1>
</div>
<div class="row">
<div class="col-sm-4">
<a href="what_is_cytoscape.html">
<img src="images/logo/cy3logoOrange.svg" />
</a>
</div>
<div class="col-sm-8">
<h3>Get Involved!</h3>
<h3 class="warn">Cytoscape App Developer Ladder</h3>
<p>
<a href="http://wiki.cytoscape.org/Cytoscape-App-Ladder">
Start your climb today!
</a> This is the best introduction to Cytoscape App development.
</p>
<h3>Publish Your Apps</h3>
<p>
Got a new App? Please <a href="http://apps.cytoscape.org">send it to us</a>. Once your plugin is registered to the store, Cytoscape users can access it through App Manager.
</p>
<h3>Google Summer of Code</h3>
<p>
If you are a student, you can contribute to Cytoscape through Google Summer of Code program. For more information about GSoC, please visit <a href="http://nrnb.org/gsoc.html">NRNB web site.</a>
</p>
</div>
<div class="col-sm-12">
<h3>Join Core Team</h3>
<p>
Want to hack the Cytoscape Core code? Volunteers are always welcome! Joining our community is easy. There's no commitment beyond writing good code and you can contribute as much or as little as you like. Here is how to get started:
</p>
<ul>
<li>
Check out our <a href="roadmap.html">Product Roadmap</a> to see where we've been and where we're heading.
</li>
<li>
Ask questions and start sending us pull-requests / patches via GitHub.
</li>
<li>
We'll provide commit access to our <a href="https://github.com/cytoscape">GitHub repository</a> once we trust you!
</li>
<li>
Start joining our team conference calls each Thursday to coordinate your development efforts with ours.
</li>
<li>
If you remain a helpful contributor to the team, we'll vote you in as a core developer!
</li>
<li>
If your company or institution is interested in taking a larger role in the project, join the <a href="http://www.cytoscapeconsortium.org/">Cytoscape Consortium</a>.
</li>
</ul>
</div>
</div>
<div class="row">
<p>
<div class="col-md-3">
<a href="https://github.com/cytoscape">
<img src="images/github.png" />
</a>
</div>
<div class="col-md-9" id="developer_resources">
<h3>Developer Resources</h3>
<h4>Issue Tracker, Nexus Repository, Nightly Builds</h4>
<ul>
<li>
<h4><a href="https://cytoscape.atlassian.net/">Jira Issue Tracker</a></h4>
</li>
<li>
<h4><a href="https://nrnb-nexus.ucsd.edu/">Nexus Repository</a></h4>
</li>
<li>
<h4><a href="https://app.travis-ci.com/github/cytoscape">Travis CI</a></h4>
</li>
<li>
<h4><a href="javadoc/current_release/">Latest Javadoc</a></h4>
</li>
<li>
<h4><a href="https://cytoscape-builds.ucsd.edu/cytoscape-builds/">Latest Builds</a></h4>
</li>
</ul>
<h3>Code Repository on GitHub</h3>
<p>
Cytoscape Core projects are now hosted on <a href="https://github.com/cytoscape">GitHub</a>. From now on, latest version of Cytoscape code should be obtained from the following git repositories:
</p>
<ul>
<li>
<h4><a href="http://wiki.cytoscape.org">Developer Wiki</a></h4>
</li>
<li>
<h4><a href="https://github.com/cytoscape/cytoscape">Cytoscape 3.x</a></h4>
</li>
<li>
<h4><a href="https://github.com/cytoscape/cytoscape.js">Cytoscape.js</a></h4>
</li>
</ul>
<p>
<a href="https://github.com/cytoscape/cytoscape2">(Desupported) Cytoscape 2.x</a>
</p>
<p>
Note that Cytoscape 3 is a multi-repository project. You need to read
<a href="https://github.com/cytoscape/cytoscape/blob/develop/README.md">this</a> document to learn how to clone all Cytoscape 3 projects.
</p>
</div>
</p>
</div>
<div class="row">
<h4>Port Your 2.x Plugins</h4>
<p>
With the release of the 3.x, Cytoscape core team no longer maintaining 2.x code and you need to port your Plugins to 3.x series to use latest features in Cytoscape. In the sections below, you'll find links to documentation and tutorials related to 3.x
app development.
</p>
<h3>Questions?</h3>
<a href="https://stackoverflow.com/questions/tagged/cytoscape?sort=newest" target="_blank">
StackOverflow
</a> is the best way to reach core developers. Same goes for any App development questions as well.
</div>
</div>
</div>
<div class="white">
<div class="container">
<div class="row">
<div class="col-xs-12 col-md-6">
<h3>Documentation for 3.x App Developers</h3>
<h4>What is Cytoscape 3.x?</h4>
<p>
Learn about the
<a href="http://wiki.cytoscape.org/Cytoscape_3/CoreDevelopment">
Architecture, Backward Compatibility, and API</a> of Cytoscape 3.x.
</p>
<h4>What is the Cytoscape 3.x Product Roadmap?</h4>
<p>
Learn <a href="roadmap.html">where Cytoscape has been and what our plans are. </a>
</p>
<h4>What are 3.x Apps?</h4>
<p>
Primary documentation for Cytoscape 3.x
<a href="http://wiki.cytoscape.org/Cytoscape-3.0-App-Development">
app development
</a>.
</p>
<p>
All Cytoscape 3.x <a href="http://wiki.cytoscape.org/Cytoscape-App-Ladder">
app development tutorials</a>.
</p>
</div>
<div class="col-xs-12 col-md-6">
<h3>Code for 3.x App Developers</h3>
<h4 class="cy-latest-version">Latest Cytoscape Release: </h4>
<ul>
<li>
<a href="download.php" class="cy-latest-version">
Download Cytoscape </a>
</li>
<li>
<a href="javadoc/current_release" class="cy-latest-version">
JavaDocs for
</a>
</li>
<li>
<a href="https://nrnb-nexus.ucsd.edu/repository/cytoscape_releases/org/cytoscape/swing-app-api/3.9.0/swing-app-api-3.9.0.jar" class="cy-latest-version">
API Jar for
</a>
</li>
<li>
<a href="https://github.com/cytoscape/cytoscape-app-template/tree/3.9.0" class="cy-latest-version">
App Developer Project Tag:
</a>
</li>
</ul>
</div>
</div>
</div>
</div>
<div class="light-gray">
<div class="container text-center">
<!--Consortium Members -->
<h2>
Cytoscape Development Tools
</h2>
<div class="row institute">
<div class="col-xs-6 col-md-4">
<a href="http://eclipse.org/"><img src="images/logo/eclipse_logo_colour.png" /></a>
<br>Eclipse is the backbone of our development.
</div>
<div class="col-xs-6 col-md-4">
<a href="http://www.yourkit.com/"><img src="images/logo/yklogo.png" width="180" /></a>
<br>Cytoscape uses YourKit for Java profiling.
</div>
<div class="col-xs-6 col-md-4">
<a href="https://maven.apache.org//"><img src="images/logo/Maven_logo.png" width="180" /></a>
<br>All of our projects are build using Maven.
</div>
<div class="col-xs-6 col-md-4">
<a href="http://www.home.ndexbio.org"><img src="images/logo/ndex-linear-150pxwide.png" width="100" alt="software infrastructure for network biology" /></a>
<br>Visit the NDEx Project’s website!.
</div>
</div>
</div>
<footer></footer>
<script src="js/setup_page.js"></script>
</body>
</html>