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WICHTIGE_ORGANISMEN.txt
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Genomatix organismen:
hsa => Homo sapiens (human)
mmu => Mus musculus (mouse)
rno => Rattus norvegicus (rat)
sce => Saccharomyces cerevisiae (budding yeast)
ath => Arabidopsis thaliana (thale cress)
dme => Drosophila melanogaster (fruit fly)
ssc => Sus scrofa (pig)
gga => Gallus gallus (chicken)
aga => Anopheles gambiae (mosquito)
cel => Caenorhabditis elegans (nematode)
mcc => Macaca mulatta (rhesus monkey)
ecb => Equus caballus (horse)
mdo => Monodelphis domestica (opossum)
osa => Oryza sativa japonica (Japanese rice)
ptr => Pan troglodytes (chimpanzee)
cfa => Canis familiaris (dog)
oaa => Ornithorhynchus anatinus (platypus)
ame => Apis mellifera (honey bee)
spo => Schizosaccharomyces pombe (fission yeast)
bta => Bos taurus (cow)
dre => Danio rerio (zebrafish)
------------------------------------------
Alle in Kegg (1141):
hsa => Homo sapiens (human)
ptr => Pan troglodytes (chimpanzee)
mcc => Macaca mulatta (rhesus monkey)
mmu => Mus musculus (mouse)
rno => Rattus norvegicus (rat)
cfa => Canis familiaris (dog)
bta => Bos taurus (cow)
ssc => Sus scrofa (pig)
ecb => Equus caballus (horse)
mdo => Monodelphis domestica (opossum)
oaa => Ornithorhynchus anatinus (platypus)
gga => Gallus gallus (chicken)
tgu => Taeniopygia guttata (zebra finch)
xla => Xenopus laevis (African clawed frog)
xtr => Xenopus tropicalis (western clawed frog)
dre => Danio rerio (zebrafish)
bfo => Branchiostoma floridae (Florida lancelet)
cin => Ciona intestinalis (sea squirt)
spu => Strongylocentrotus purpuratus (purple sea urchin)
dme => Drosophila melanogaster (fruit fly)
dpo => Drosophila pseudoobscura pseudoobscura
dan => Drosophila ananassae
der => Drosophila erecta
dpe => Drosophila persimilis
dse => Drosophila sechellia
dsi => Drosophila simulans
dwi => Drosophila willistoni
dya => Drosophila yakuba
dgr => Drosophila grimshawi
dmo => Drosophila mojavensis
dvi => Drosophila virilis
aga => Anopheles gambiae (mosquito)
aag => Aedes aegypti (yellow fever mosquito)
cqu => Culex quinquefasciatus (southern house mosquito)
ame => Apis mellifera (honey bee)
nvi => Nasonia vitripennis (jewel wasp)
tca => Tribolium castaneum (red flour beetle)
api => Acyrthosiphon pisum (pea aphid)
isc => Ixodes scapularis (black-legged tick)
cel => Caenorhabditis elegans (nematode)
cbr => Caenorhabditis briggsae
bmy => Brugia malayi (filaria)
smm => Schistosoma mansoni
nve => Nematostella vectensis (sea anemone)
hmg => Hydra magnipapillata
tad => Trichoplax adhaerens
ath => Arabidopsis thaliana (thale cress)
pop => Populus trichocarpa (black cottonwood)
rcu => Ricinus communis (castor bean)
vvi => Vitis vinifera (wine grape)
osa => Oryza sativa japonica (Japanese rice)
sbi => Sorghum bicolor (sorghum)
zma => Zea mays (maize)
ppp => Physcomitrella patens subsp. patens
cre => Chlamydomonas reinhardtii
olu => Ostreococcus lucimarinus
cme => Cyanidioschyzon merolae
sce => Saccharomyces cerevisiae (budding yeast)
ago => Ashbya gossypii (Eremothecium gossypii)
kla => Kluyveromyces lactis
lth => Lachancea thermotolerans
dha => Debaryomyces hansenii
pic => Pichia stipitis
ppa => Pichia pastoris
vpo => Vanderwaltozyma polyspora
lel => Lodderomyces elongisporus
zro => Zygosaccharomyces rouxii
cal => Candida albicans
ctp => Candida tropicalis
cdu => Candida dubliniensis
cgr => Candida glabrata
yli => Yarrowia lipolytica
spo => Schizosaccharomyces pombe (fission yeast)
ncr => Neurospora crassa
pan => Podospora anserina
mgr => Magnaporthe grisea
fgr => Fusarium graminearum
ani => Aspergillus nidulans
afm => Aspergillus fumigatus
aor => Aspergillus oryzae
ang => Aspergillus niger
afv => Aspergillus flavus
pcs => Penicillium chrysogenum
nfi => Neosartorya fischeri
cim => Coccidioides immitis
ure => Uncinocarpus reesii
ssl => Sclerotinia sclerotiorum
bfu => Botryotinia fuckeliana
cne => Cryptococcus neoformans JEC21
cnb => Cryptococcus neoformans B-3501A
lbc => Laccaria bicolor
mpr => Moniliophthora perniciosa
uma => Ustilago maydis
mgl => Malassezia globosa
ecu => Encephalitozoon cuniculi
mbr => Monosiga brevicollis
ddi => Dictyostelium discoideum (cellular slime mold)
ehi => Entamoeba histolytica
edi => Entamoeba dispar
pfa => Plasmodium falciparum 3D7
pfd => Plasmodium falciparum Dd2
pfh => Plasmodium falciparum HB3
pyo => Plasmodium yoelii
pcb => Plasmodium chabaudi
pbe => Plasmodium berghei
pkn => Plasmodium knowlesi
pvx => Plasmodium vivax
tan => Theileria annulata
tpv => Theileria parva
bbo => Babesia bovis
cpv => Cryptosporidium parvum
cho => Cryptosporidium hominis
tgo => Toxoplasma gondii
tet => Tetrahymena thermophila
ptm => Paramecium tetraurelia
tbr => Trypanosoma brucei
tcr => Trypanosoma cruzi
lma => Leishmania major
lif => Leishmania infantum
lbz => Leishmania braziliensis
gla => Giardia lamblia
tva => Trichomonas vaginalis
pti => Phaeodactylum tricornutum
tps => Thalassiosira pseudonana
eco => Escherichia coli K-12 MG1655
ecj => Escherichia coli K-12 W3110
ecd => Escherichia coli K-12 DH10B
ebw => Escherichia coli K-12 MC4100(MuLac) BW2952
ece => Escherichia coli O157 H7 EDL933 (EHEC)
ecs => Escherichia coli O157 H7 Sakai (EHEC)
ecf => Escherichia coli O157 H7 EC4115 (EHEC)
etw => Escherichia coli O157 H7 TW14359 (EHEC)
ecg => Escherichia coli O127 H6 (EPEC)
ecc => Escherichia coli O6 H1 CFT073 (UPEC)
eci => Escherichia coli UTI89 (UPEC)
ecp => Escherichia coli 536 (UPEC)
ecv => Escherichia coli O1 (APEC)
ecw => Escherichia coli O139 H28 E24377A (ETEC)
ecx => Escherichia coli O9 HS (commensal)
ecm => Escherichia coli SECEC
ecy => Escherichia coli O152 H28 SE11 (commensal)
ecl => Escherichia coli ATCC 8739
eck => Escherichia coli 55989 (EAEC)
ecq => Escherichia coli ED1a
ecr => Escherichia coli IAI1 (commensal)
ect => Escherichia coli O7 K1 IAI39 (ExPEC)
ecz => Escherichia coli O45 K1 S88 (ExPEC)
eum => Escherichia coli O17 K52 H18 UMN026 (ExPEC)
elf => Escherichia coli LF82
ebl => Escherichia coli BL21
ebd => Escherichia coli BL21(DE3)
ebr => Escherichia coli B REL606
eoh => Escherichia coli O103 H2 12009
eoi => Escherichia coli O111 H- 11128
eoj => Escherichia coli O26 H11 11368
efe => Escherichia fergusonii
sty => Salmonella enterica subsp. enterica serovar Typhi CT18
stt => Salmonella enterica subsp. enterica serovar Typhi Ty2
spt => Salmonella enterica subsp. enterica serovar Paratyphi A ATCC9150
sek => Salmonella enterica subsp. enterica serovar Paratyphi A AKU12601
spq => Salmonella enterica subsp. enterica serovar Paratyphi B
sei => Salmonella enterica subsp. enterica serovar Paratyphi C
sec => Salmonella enterica subsp. enterica serovar Choleraesuis
seh => Salmonella enterica subsp. enterica serovar Heidelberg
see => Salmonella enterica subsp. enterica serovar Newport
sew => Salmonella enterica subsp. enterica serovar Schwarzengrund
sea => Salmonella enterica subsp. enterica serovar Agona
sed => Salmonella enterica subsp. enterica serovar Dublin
seg => Salmonella enterica subsp. enterica serovar Gallinarum
set => Salmonella enterica subsp. enterica serovar Enteritidis
ses => Salmonella enterica subsp. arizonae
stm => Salmonella typhimurium LT2
ype => Yersinia pestis CO92 (biovar Orientalis)
ypk => Yersinia pestis KIM (biovar Mediaevalis)
ypm => Yersinia pestis Mediaevails (biovar Mediaevalis)
ypa => Yersinia pestis Antiqua (biovar Antiqua)
ypn => Yersinia pestis Nepal516 (biovar Antiqua)
ypp => Yersinia pestis Pestoides (biovar Microtus)
ypg => Yersinia pestis Angola (biovar Antiqua)
yps => Yersinia pseudotuberculosis IP32953
ypi => Yersinia pseudotuberculosis IP31758
ypy => Yersinia pseudotuberculosis YPIII
ypb => Yersinia pseudotuberculosis PB1/+
yen => Yersinia enterocolitica
sfl => Shigella flexneri 301 (serotype 2a)
sfx => Shigella flexneri 2457T (serotype 2a)
sfv => Shigella flexneri 8401 (serotype 5b)
ssn => Shigella sonnei
sbo => Shigella boydii Sb227
sbc => Shigella boydii CDC 3083-94
sdy => Shigella dysenteriae
eca => Erwinia carotovora
pct => Pectobacterium carotovorum
pwa => Pectobacterium wasabiae
eta => Erwinia tasmaniensis
plu => Photorhabdus luminescens
pay => Photorhabdus asymbiotica
buc => Buchnera aphidicola APS
bas => Buchnera aphidicola Sg
bab => Buchnera aphidicola Bp
bcc => Buchnera aphidicola Cc
bap => Buchnera aphidicola 5A
bau => Buchnera aphidicola Tuc7
wbr => Wigglesworthia glossinidia
sgl => Sodalis glossinidius
ent => Enterobacter sp. 638
esa => Enterobacter sakazakii
ctu => Cronobacter turicensis
kpn => Klebsiella pneumoniae
kpe => Klebsiella pneumoniae 342
kpu => Klebsiella pneumoniae NTUH-K2044
cko => Citrobacter koseri ATCC BAA-895
spe => Serratia proteamaculans
pmr => Proteus mirabilis
eic => Edwardsiella ictaluri
etr => Edwardsiella tarda
bfl => Candidatus Blochmannia floridanus
bpn => Candidatus Blochmannia pennsylvanicus
hde => Candidatus Hamiltonella defensa
dda => Dickeya dadantii Ech703
ddc => Dickeya dadantii Ech586
dze => Dickeya zeae
hin => Haemophilus influenzae Rd KW20 (serotype d)
hit => Haemophilus influenzae 86-028NP (nontypeable)
hip => Haemophilus influenzae PittEE
hiq => Haemophilus influenzae PittGG
hdu => Haemophilus ducreyi
hap => Haemophilus parasuis
hso => Haemophilus somnus 129PT
hsm => Haemophilus somnus 2336
pmu => Pasteurella multocida
msu => Mannheimia succiniciproducens
apl => Actinobacillus pleuropneumoniae L20 (serotype 5b)
apj => Actinobacillus pleuropneumoniae JL03 (serotype 3)
apa => Actinobacillus pleuropneumoniae AP76 (serotype 7)
asu => Actinobacillus succinogenes
aap => Aggregatibacter aphrophilus
aat => Aggregatibacter actinomycetemcomitans
xfa => Xylella fastidiosa 9a5c
xft => Xylella fastidiosa Temecula1
xfm => Xylella fastidiosa M12
xfn => Xylella fastidiosa M23
xcc => Xanthomonas campestris pv. campestris ATCC 33913
xcb => Xanthomonas campestris pv. campestris 8004
xca => Xanthomonas campestris pv. campestris B100
xcv => Xanthomonas campestris pv. vesicatoria
xac => Xanthomonas axonopodis
xoo => Xanthomonas oryzae KACC10331
xom => Xanthomonas oryzae MAFF311018
xop => Xanthomonas oryzae PXO99A
sml => Stenotrophomonas maltophilia K279a
smt => Stenotrophomonas maltophilia R551-3
vch => Vibrio cholerae O1
vco => Vibrio cholerae O395
vcm => Vibrio cholerae M66-2
vcj => Vibrio cholerae MJ-1236
vvu => Vibrio vulnificus CMCP6
vvy => Vibrio vulnificus YJ016
vpa => Vibrio parahaemolyticus
vha => Vibrio harveyi
vsp => Vibrio splendidus
vex => Vibrio sp. Ex25
vfi => Vibrio fischeri
vfm => Vibrio fischeri MJ11
vsa => Aliivibrio salmonicida LFI1238
ppr => Photobacterium profundum
pae => Pseudomonas aeruginosa PAO1
pau => Pseudomonas aeruginosa UCBPP-PA14
pap => Pseudomonas aeruginosa PA7
pag => Pseudomonas aeruginosa LESB58
ppu => Pseudomonas putida KT2440
ppf => Pseudomonas putida F1
ppg => Pseudomonas putida GB-1
ppw => Pseudomonas putida W619
pst => Pseudomonas syringae pv. tomato DC3000
psb => Pseudomonas syringae pv. syringae B728a
psp => Pseudomonas syringae pv. phaseolicola 1448A
pfl => Pseudomonas fluorescens Pf-5
pfo => Pseudomonas fluorescens Pf0-1
pfs => Pseudomonas fluorescens SBW25
pen => Pseudomonas entomophila
pmy => Pseudomonas mendocina
psa => Pseudomonas stutzeri
cja => Cellvibrio japonicus
avn => Azotobacter vinelandii
par => Psychrobacter arcticum
pcr => Psychrobacter cryohalolentis
prw => Psychrobacter sp. PRwf-1
aci => Acinetobacter sp. ADP1
acb => Acinetobacter baumannii ATCC 17978
abm => Acinetobacter baumannii SDF
aby => Acinetobacter baumannii AYE
abc => Acinetobacter baumannii ACICU
abn => Acinetobacter baumannii AB0057
abb => Acinetobacter baumannii AB307-0294
son => Shewanella oneidensis
sdn => Shewanella denitrificans
sfr => Shewanella frigidimarina
saz => Shewanella amazonensis
sbl => Shewanella baltica OS155
sbm => Shewanella baltica OS185
sbn => Shewanella baltica OS195
sbp => Shewanella baltica OS223
slo => Shewanella loihica
spc => Shewanella putrefaciens
sse => Shewanella sediminis
spl => Shewanella pealeana
she => Shewanella sp. MR-4
shm => Shewanella sp. MR-7
shn => Shewanella sp. ANA-3
shw => Shewanella sp. W3-18-1
shl => Shewanella halifaxensis
swd => Shewanella woodyi ATCC 51908
swp => Shewanella piezotolerans WP3
ilo => Idiomarina loihiensis
cps => Colwellia psychrerythraea
pha => Pseudoalteromonas haloplanktis
pat => Pseudoalteromonas atlantica
sde => Saccharophagus degradans
maq => Marinobacter aquaeolei
amc => Alteromonas macleodii
pin => Psychromonas ingrahamii
ttu => Teredinibacter turnerae
cbu => Coxiella burnetii RSA 493
cbs => Coxiella burnetii RSA 331
cbd => Coxiella burnetii Dugway 5J108-111
cbg => Coxiella burnetii CbuG_Q212
cbc => Coxiella burnetii CbuK_Q154
lpn => Legionella pneumophila Philadelphia 1
lpf => Legionella pneumophila Lens
lpp => Legionella pneumophila Paris
lpc => Legionella pneumophila Corby
mca => Methylococcus capsulatus
ftu => Francisella tularensis subsp. tularensis SCHU S4
ftf => Francisella tularensis subsp. tularensis FSC 198
ftw => Francisella tularensis subsp. tularensis WY96-3418
ftl => Francisella tularensis subsp. holarctica LVS
fth => Francisella tularensis subsp. holarctica OSU18
fta => Francisella tularensis subsp. holarctica FTNF002-00
ftm => Francisella tularensis subsp. mediasiatica FSC147
ftn => Francisella novicida U112
fph => Francisella philomiragia
tcx => Thiomicrospira crunogena
noc => Nitrosococcus oceani
aeh => Alkalilimnicola ehrlichei
hha => Halorhodospira halophila
tgr => Thioalkalivibrio sp. HL-EbGR7
hna => Halothiobacillus neapolitanus
hch => Hahella chejuensis
csa => Chromohalobacter salexigens
abo => Alcanivorax borkumensis
mmw => Marinomonas sp. MWYL1
aha => Aeromonas hydrophila
asa => Aeromonas salmonicida
tau => Tolumonas auensis
dno => Dichelobacter nodosus
afe => Acidithiobacillus ferrooxidans ATCC 53993
afr => Acidithiobacillus ferrooxidans ATCC 23270
bci => Baumannia cicadellinicola
crp => Candidatus Carsonella ruddii
rma => Candidatus Ruthia magnifica
vok => Candidatus Vesicomyosocius okutanii
kko => Kangiella koreensis
nme => Neisseria meningitidis MC58 (serogroup B)
nma => Neisseria meningitidis Z2491 (serogroup A)
nmc => Neisseria meningitidis FAM18 (serogroup C)
nmn => Neisseria meningitidis 053442 (serogroup C)
nmi => Neisseria meningitidis alpha14
ngo => Neisseria gonorrhoeae FA 1090
ngk => Neisseria gonorrhoeae NCCP11945
cvi => Chromobacterium violaceum
lhk => Laribacter hongkongensis
rso => Ralstonia solanacearum
rpi => Ralstonia pickettii 12J
rpf => Ralstonia pickettii 12D
reu => Ralstonia eutropha JMP134
reh => Ralstonia eutropha H16
rme => Ralstonia metallidurans
cti => Cupriavidus taiwanensis
bma => Burkholderia mallei ATCC 23344
bmv => Burkholderia mallei SAVP1
bml => Burkholderia mallei NCTC 10229
bmn => Burkholderia mallei NCTC 10247
bps => Burkholderia pseudomallei K96243
bpm => Burkholderia pseudomallei 1710b
bpl => Burkholderia pseudomallei 1106a
bpd => Burkholderia pseudomallei 668
bpr => Burkholderia pseudomallei MSHR346
bte => Burkholderia thailandensis
bvi => Burkholderia vietnamiensis
bur => Burkholderia sp. 383
bcn => Burkholderia cenocepacia AU1054
bch => Burkholderia cenocepacia HI2424
bcm => Burkholderia cenocepacia MC0-3
bcj => Burkholderia cenocepacia J2315
bam => Burkholderia cepacia
bac => Burkholderia ambifaria MC40-6
bmu => Burkholderia multivorans ATCC 17616 (JGI)
bmj => Burkholderia multivorans ATCC 17616 (Tohoku)
bxe => Burkholderia xenovorans
bph => Burkholderia phymatum
bpy => Burkholderia phytofirmans
bgl => Burkholderia glumae
pnu => Polynucleobacter sp. QLW-P1DMWA-1
pne => Polynucleobacter necessarius
bpe => Bordetella pertussis
bpa => Bordetella parapertussis
bbr => Bordetella bronchiseptica
bpt => Bordetella petrii
bav => Bordetella avium
rfr => Rhodoferax ferrireducens
pol => Polaromonas sp. JS666
pna => Polaromonas naphthalenivorans
aav => Acidovorax avenae
ajs => Acidovorax sp. JS42
vei => Verminephrobacter eiseniae
dac => Delftia acidovorans
dia => Diaphorobacter sp. TPSY
vap => Variovorax paradoxus
ctt => Comamonas testosteroni
mpt => Methylibium petroleiphilum
har => Herminiimonas arsenicoxydans
mms => Minibacterium massiliensis
lch => Leptothrix cholodnii
neu => Nitrosomonas europaea
net => Nitrosomonas eutropha
nmu => Nitrosospira multiformis
eba => Aromatoleum aromaticum EbN1
azo => Azoarcus sp. BH72
dar => Dechloromonas aromatica
tmz => Thauera sp. MZ1T
tbd => Thiobacillus denitrificans
mfa => Methylobacillus flagellatus
mmb => Methylotenera mobilis
mei => Methylovorus sp. SIP3-4
app => Accumulibacter phosphatis
hpy => Helicobacter pylori 26695
hpj => Helicobacter pylori J99
hpa => Helicobacter pylori HPAG1
hps => Helicobacter pylori Shi470
hpg => Helicobacter pylori G27
hpp => Helicobacter pylori P12
hpb => Helicobacter pylori B38
hhe => Helicobacter hepaticus
hac => Helicobacter acinonychis
wsu => Wolinella succinogenes
tdn => Sulfurimonas denitrificans
cje => Campylobacter jejuni NCTC11168
cjr => Campylobacter jejuni RM1221
cjj => Campylobacter jejuni 81-176
cju => Campylobacter jejuni 81116
cjd => Campylobacter jejuni subsp. doylei 269.97
cff => Campylobacter fetus
ccv => Campylobacter curvus
cha => Campylobacter hominis ATCC BAA-381
cco => Campylobacter concisus 13826
cla => Campylobacter lari
abu => Arcobacter butzleri
sdl => Sulfurospirillum deleyianum
nis => Nitratiruptor sp. SB155-2
sun => Sulfurovum sp. NBC37-1
nam => Nautilia profundicola
gsu => Geobacter sulfurreducens
gme => Geobacter metallireducens
gur => Geobacter uraniumreducens
glo => Geobacter lovleyi
gbm => Geobacter bemidjiensis
geo => Geobacter sp. FRC-32
gem => Geobacter sp. M21
pca => Pelobacter carbinolicus
ppd => Pelobacter propionicus
dvu => Desulfovibrio vulgaris Hildenborough
dvl => Desulfovibrio vulgaris DP4
dvm => Desulfovibrio vulgaris Miyazaki F
dde => Desulfovibrio desulfuricans G20
dds => Desulfovibrio desulfuricans ATCC 27774
dma => Desulfovibrio magneticus
dsa => Desulfovibrio salexigens
lip => Lawsonia intracellularis
dba => Desulfomicrobium baculatum
drt => Desulfohalobium retbaense
bba => Bdellovibrio bacteriovorus
dps => Desulfotalea psychrophila
dol => Desulfococcus oleovorans
dal => Desulfatibacillum alkenivorans
dat => Desulfobacterium autotrophicum
ade => Anaeromyxobacter dehalogenans 2CP-C
acp => Anaeromyxobacter dehalogenans 2CP-1
afw => Anaeromyxobacter sp. Fw109-5
ank => Anaeromyxobacter sp. K
mxa => Myxococcus xanthus
scl => Sorangium cellulosum
hoh => Haliangium ochraceum
sat => Syntrophus aciditrophicus
sfu => Syntrophobacter fumaroxidans
rpr => Rickettsia prowazekii
rty => Rickettsia typhi
rcm => Rickettsia canadensis
rco => Rickettsia conorii
rfe => Rickettsia felis
rak => Rickettsia akari
rri => Rickettsia rickettsii Sheila Smith
rrj => Rickettsia rickettsii Iowa
rms => Rickettsia massiliae
rpk => Rickettsia peacockii
raf => Rickettsia africae
rbe => Rickettsia bellii RML369-C
rbo => Rickettsia bellii OSU 85-389
ots => Orientia tsutsugamushi Boryong
ott => Orientia tsutsugamushi Ikeda
wol => Wolbachia wMel
wbm => Wolbachia wBm
wri => Wolbachia sp. wRi
wpi => Wolbachia pipientis
ama => Anaplasma marginale St. Maries
amf => Anaplasma marginale Florida
acn => Anaplasma centrale
aph => Anaplasma phagocytophilum
eru => Ehrlichia ruminantium Welgevonden (South Africa)
erw => Ehrlichia ruminantium Welgevonden (France)
erg => Ehrlichia ruminantium Gardel
ecn => Ehrlichia canis
ech => Ehrlichia chaffeensis
nse => Neorickettsia sennetsu
nri => Neorickettsia risticii
pub => Candidatus Pelagibacter ubique
mlo => Mesorhizobium loti
mes => Mesorhizobium sp. BNC1
pla => Parvibaculum lavamentivorans
sme => Sinorhizobium meliloti
smd => Sinorhizobium medicae
atu => Agrobacterium tumefaciens C58
atc => Agrobacterium tumefaciens C58 (Cereon)
ara => Agrobacterium radiobacter K84
avi => Agrobacterium vitis S4
ret => Rhizobium etli CFN 42
rec => Rhizobium etli CIAT 652
rle => Rhizobium leguminosarum
rlt => Rhizobium leguminosarum bv. trifolii WSM2304
rlg => Rhizobium leguminosarum bv. trifolii WSM1325
rhi => Rhizobium sp. NGR234
las => Candidatus Liberibacter asiaticus
bme => Brucella melitensis 16M
bmi => Brucella melitensis ATCC 23457
bmf => Brucella melitensis biovar Abortus
bmb => Brucella abortus 9-941
bmc => Brucella abortus S19
bms => Brucella suis 1330
bmt => Brucella suis ATCC 23445
bov => Brucella ovis
bcs => Brucella canis
bmr => Brucella microti
oan => Ochrobactrum anthropi
bja => Bradyrhizobium japonicum
bra => Bradyrhizobium sp. ORS278
bbt => Bradyrhizobium sp. BTAi1
rpa => Rhodopseudomonas palustris CGA009
rpb => Rhodopseudomonas palustris HaA2
rpc => Rhodopseudomonas palustris BisB18
rpd => Rhodopseudomonas palustris BisB5
rpe => Rhodopseudomonas palustris BisA53
rpt => Rhodopseudomonas palustris TIE-1
nwi => Nitrobacter winogradskyi
nha => Nitrobacter hamburgensis
oca => Oligotropha carboxidovorans
bhe => Bartonella henselae
bqu => Bartonella quintana
bbk => Bartonella bacilliformis
btr => Bartonella tribocorum
bgr => Bartonella grahamii
xau => Xanthobacter autotrophicus
azc => Azorhizobium caulinodans
mex => Methylobacterium extorquens
mea => Methylobacterium extorquens AM1
mdi => Methylobacterium extorquens DM4
mrd => Methylobacterium radiotolerans
met => Methylobacterium sp. 4-46
mpo => Methylobacterium populi
mch => Methylobacterium chloromethanicum
mno => Methylobacterium nodulans
bid => Beijerinckia indica
msl => Methylocella silvestris
hci => Candidatus Hodgkinia cicadicola
ccr => Caulobacter crescentus CB15
ccs => Caulobacter crescentus NA1000
cak => Caulobacter sp. K31
pzu => Phenylobacterium zucineum
sil => Silicibacter pomeroyi
sit => Silicibacter sp. TM1040
rsp => Rhodobacter sphaeroides 2.4.1
rsh => Rhodobacter sphaeroides ATCC 17029
rsq => Rhodobacter sphaeroides ATCC 17025
rsk => Rhodobacter sphaeroides KD131
jan => Jannaschia sp. CCS1
rde => Roseobacter denitrificans
pde => Paracoccus denitrificans
dsh => Dinoroseobacter shibae
mmr => Maricaulis maris
hne => Hyphomonas neptunium
hba => Hirschia baltica
zmo => Zymomonas mobilis
zmn => Zymomonas mobilis subsp. mobilis NCIMB 11163
nar => Novosphingobium aromaticivorans
sal => Sphingopyxis alaskensis
swi => Sphingomonas wittichii
eli => Erythrobacter litoralis
gox => Gluconobacter oxydans
gbe => Granulobacter bethesdensis
acr => Acidiphilium cryptum JF-5
gdi => Gluconacetobacter diazotrophicus PAl 5 (Brazil)
gdj => Gluconacetobacter diazotrophicus PAl 5 (JGI)
apt => Acetobacter pasteurianus
rru => Rhodospirillum rubrum
rce => Rhodospirillum centenum
mag => Magnetospirillum magneticum
mgm => Magnetococcus sp. MC-1
bsu => Bacillus subtilis
bha => Bacillus halodurans
ban => Bacillus anthracis Ames
bar => Bacillus anthracis Ames 0581
baa => Bacillus anthracis A2012
bat => Bacillus anthracis Sterne
bah => Bacillus anthracis CDC 684
bai => Bacillus anthracis A0248
bce => Bacillus cereus ATCC 14579
bca => Bacillus cereus ATCC 10987
bcz => Bacillus cereus ZK
bcr => Bacillus cereus AH187
bcb => Bacillus cereus B4264
bcu => Bacillus cereus AH820
bcg => Bacillus cereus G9842
bcq => Bacillus cereus Q1
bcx => Bacillus cereus 03BB102
bcy => Bacillus cytotoxis NVH 391-98
btk => Bacillus thuringiensis 97-27
btl => Bacillus thuringiensis Al Hakam
bwe => Bacillus weihenstephanensis
bli => Bacillus licheniformis ATCC 14580
bld => Bacillus licheniformis DSM13
bcl => Bacillus clausii
bay => Bacillus amyloliquefaciens
bpu => Bacillus pumilus
oih => Oceanobacillus iheyensis
gka => Geobacillus kaustophilus
gtn => Geobacillus thermodenitrificans
gwc => Geobacillus sp. WCH70
gym => Geobacillus sp. Y412MC10
gyc => Geobacillus sp. Y412MC61
afl => Anoxybacillus flavithermus
sau => Staphylococcus aureus N315
sav => Staphylococcus aureus Mu50
saw => Staphylococcus aureus Mu3
sam => Staphylococcus aureus MW2
sar => Staphylococcus aureus MRSA252
sas => Staphylococcus aureus MSSA476
sac => Staphylococcus aureus COL
sab => Staphylococcus aureus RF122
saa => Staphylococcus aureus USA300
sax => Staphylococcus aureus USA300 TCH1516
sao => Staphylococcus aureus NCTC8325
saj => Staphylococcus aureus JH9
sah => Staphylococcus aureus JH1
sae => Staphylococcus aureus Newman
sad => Staphylococcus aureus ED98
sep => Staphylococcus epidermidis ATCC 12228
ser => Staphylococcus epidermidis RP62A
sha => Staphylococcus haemolyticus
ssp => Staphylococcus saprophyticus
sca => Staphylococcus carnosus
lmo => Listeria monocytogenes EGD-e
lmf => Listeria monocytogenes F2365
lmh => Listeria monocytogenes HCC23
lmc => Listeria monocytogenes Clip81459
lin => Listeria innocua
lwe => Listeria welshimeri SLCC5334
lsp => Lysinibacillus sphaericus
esi => Exiguobacterium sibiricum
eat => Exiguobacterium sp. AT1b
mcl => Macrococcus caseolyticus
bbe => Brevibacillus brevis
pjd => Paenibacillus sp. JDR-2
aac => Alicyclobacillus acidocaldarius
lla => Lactococcus lactis subsp. lactis IL1403
llk => Lactococcus lactis subsp. lactis KF147
llc => Lactococcus lactis subsp. cremoris SK11
llm => Lactococcus lactis subsp. cremoris MG1363
spy => Streptococcus pyogenes SF370 (serotype M1)
spz => Streptococcus pyogenes MGAS5005 (serotype M1)
spm => Streptococcus pyogenes MGAS8232 (serotype M18)
spg => Streptococcus pyogenes MGAS315 (serotype M3)
sps => Streptococcus pyogenes SSI-1 (serotype M3)
sph => Streptococcus pyogenes MGAS10270 (serotype M2)
spi => Streptococcus pyogenes MGAS10750 (serotype M4)
spj => Streptococcus pyogenes MGAS2096 (serotype M12)
spk => Streptococcus pyogenes MGAS9429 (serotype M12)
spf => Streptococcus pyogenes Manfredo (serotype M5)
spa => Streptococcus pyogenes MGAS10394 (serotype M6)
spb => Streptococcus pyogenes MGAS6180 (serotype M28)
soz => Streptococcus pyogenes NZ131 (serotype M49)
spn => Streptococcus pneumoniae TIGR4 (virulent serotype 4)
spd => Streptococcus pneumoniae D39 (virulent serotype 2)
spr => Streptococcus pneumoniae R6 (avirulent)
spw => Streptococcus pneumoniae CGSP14 (serotype 14)
spx => Streptococcus pneumoniae G54 (serotype 19F)
sne => Streptococcus pneumoniae ATCC 700669 (serotype 23F ST81 lineage)
spv => Streptococcus pneumoniae Hungary19A 6
snm => Streptococcus pneumoniae 70585
sjj => Streptococcus pneumoniae JJA
spp => Streptococcus pneumoniae P1031
snt => Streptococcus pneumoniae Taiwan19F-14
sag => Streptococcus agalactiae 2603 (serotype V)
san => Streptococcus agalactiae NEM316 (serotype III)
sak => Streptococcus agalactiae A909 (serotype Ia)
smu => Streptococcus mutans
stc => Streptococcus thermophilus CNRZ1066
stl => Streptococcus thermophilus LMG18311
ste => Streptococcus thermophilus LMD-9
ssa => Streptococcus sanguinis
ssu => Streptococcus suis 05ZYH33
ssv => Streptococcus suis 98HAH33
ssb => Streptococcus suis BM407
ssi => Streptococcus suis P1/7
sss => Streptococcus suis SC84
sgo => Streptococcus gordonii
seq => Streptococcus equi subsp. zooepidemicus H70
sez => Streptococcus equi subsp. zooepidemicus MGCS10565
seu => Streptococcus equi subsp. equi 4047
sub => Streptococcus uberis
sds => Streptococcus dysgalactiae
lpl => Lactobacillus plantarum WCFS1
lpj => Lactobacillus plantarum JDM1
ljo => Lactobacillus johnsonii NCC 533
ljf => Lactobacillus johnsonii FI9785
lac => Lactobacillus acidophilus
lsa => Lactobacillus sakei
lsl => Lactobacillus salivarius
ldb => Lactobacillus delbrueckii ATCC 11842
lbu => Lactobacillus delbrueckii ATCC BAA-365
lbr => Lactobacillus brevis
lca => Lactobacillus casei ATCC 334
lcb => Lactobacillus casei BL23
lga => Lactobacillus gasseri
lre => Lactobacillus reuteri DSM 20016
lrf => Lactobacillus reuteri JCM 1112
lhe => Lactobacillus helveticus
lfe => Lactobacillus fermentum
lrh => Lactobacillus rhamnosus
lrl => Lactobacillus rhamnosus Lc 705
ppe => Pediococcus pentosaceus
efa => Enterococcus faecalis
ooe => Oenococcus oeni
lme => Leuconostoc mesenteroides
lci => Leuconostoc citreum
cac => Clostridium acetobutylicum
cpe => Clostridium perfringens 13
cpf => Clostridium perfringens ATCC 13124
cpr => Clostridium perfringens SM101
ctc => Clostridium tetani E88
cno => Clostridium novyi
cth => Clostridium thermocellum
cdf => Clostridium difficile 630
cdc => Clostridium difficile CD196
cdl => Clostridium difficile R20291
cbo => Clostridium botulinum A ATCC 3502
cba => Clostridium botulinum A ATCC 19397
cbh => Clostridium botulinum A Hall
cby => Clostridium botulinum A2
cbl => Clostridium botulinum A3 Loch Maree
cbk => Clostridium botulinum B Eklund 17B
cbb => Clostridium botulinum B1 Okra
cbi => Clostridium botulinum Ba4
cbt => Clostridium botulinum E3
cbf => Clostridium botulinum F Langeland
cbe => Clostridium beijerinckii
ckl => Clostridium kluyveri DSM 555
ckr => Clostridium kluyveri NBRC 12016
cpy => Clostridium phytofermentans
cce => Clostridium cellulolyticum
amt => Alkaliphilus metalliredigens
aoe => Alkaliphilus oremlandii
sth => Symbiobacterium thermophilum
swo => Syntrophomonas wolfei
vpr => Veillonella parvula
ate => Anaerocellum thermophilum
dsy => Desulfitobacterium hafniense Y51
dhd => Desulfitobacterium hafniense DCB-2
drm => Desulfotomaculum reducens
dae => Desulfotomaculum acetoxidans
pth => Pelotomaculum thermopropionicum
dau => Candidatus Desulforudis audaxviator
hmo => Heliobacterium modesticaldum
fma => Finegoldia magna
apr => Anaerococcus prevotii
eel => Eubacterium eligens
ere => Eubacterium rectale
tte => Thermoanaerobacter tengcongensis
tex => Thermoanaerobacter sp. X514
tpd => Thermoanaerobacter pseudethanolicus
chy => Carboxydothermus hydrogenoformans
mta => Moorella thermoacetica
adg => Ammonifex degensii
csc => Caldicellulosiruptor saccharolyticus
cpo => Coprothermobacter proteolyticus
nth => Natranaerobius thermophilus
hor => Halothermothrix orenii
mge => Mycoplasma genitalium
mpn => Mycoplasma pneumoniae
mpu => Mycoplasma pulmonis
mpe => Mycoplasma penetrans
mga => Mycoplasma gallisepticum
mmy => Mycoplasma mycoides
mmo => Mycoplasma mobile
mhy => Mycoplasma hyopneumoniae 232
mhj => Mycoplasma hyopneumoniae J
mhp => Mycoplasma hyopneumoniae 7448
msy => Mycoplasma synoviae
mcp => Mycoplasma capricolum
maa => Mycoplasma agalactiae
mat => Mycoplasma arthritidis
mco => Mycoplasma conjunctivae
mho => Mycoplasma hominis
uur => Ureaplasma parvum serovar 3 ATCC 700970
upa => Ureaplasma parvum serovar 3 ATCC 27815
uue => Ureaplasma urealyticum serovar 10 ATCC 33699
poy => Phytoplasma OY
ayw => Phytoplasma AYWB
pml => Candidatus Phytoplasma mali
pal => Candidatus Phytoplasma australiense
acl => Acholeplasma laidlawii
mfl => Mesoplasma florum
mtu => Mycobacterium tuberculosis H37Rv
mtc => Mycobacterium tuberculosis CDC1551
mra => Mycobacterium tuberculosis H37Ra
mtf => Mycobacterium tuberculosis F11
mtb => Mycobacterium tuberculosis KZN 1435
mbo => Mycobacterium bovis AF2122/97
mbb => Mycobacterium bovis BCG Pasteur 1173P2
mbt => Mycobacterium bovis BCG Tokyo 172
mle => Mycobacterium leprae TN
mlb => Mycobacterium leprae Br4923
mpa => Mycobacterium avium paratuberculosis
mav => Mycobacterium avium 104
msm => Mycobacterium smegmatis
mul => Mycobacterium ulcerans
mva => Mycobacterium vanbaalenii
mgi => Mycobacterium gilvum
mab => Mycobacterium abscessus ATCC 19977T
mmc => Mycobacterium sp. MCS
mkm => Mycobacterium sp. KMS
mjl => Mycobacterium sp. JLS
mmi => Mycobacterium marinum M
cgl => Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko)
cgb => Corynebacterium glutamicum ATCC 13032 (Bielefeld)
cgt => Corynebacterium glutamicum R
cef => Corynebacterium efficiens
cdi => Corynebacterium diphtheriae
cjk => Corynebacterium jeikeium
cur => Corynebacterium urealyticum
car => Corynebacterium aurimucosum
ckp => Corynebacterium kroppenstedtii
nfa => Nocardia farcinica
rha => Rhodococcus sp. RHA1
rer => Rhodococcus erythropolis
rop => Rhodococcus opacus
gbr => Gordonia bronchialis
sco => Streptomyces coelicolor
sma => Streptomyces avermitilis
sgr => Streptomyces griseus
twh => Tropheryma whipplei Twist
tws => Tropheryma whipplei TW08/27
lxx => Leifsonia xyli xyli CTCB07
cmi => Clavibacter michiganensis subsp. michiganensis
cms => Clavibacter michiganensis subsp. sepedonicus
art => Arthrobacter sp. FB24
aau => Arthrobacter aurescens
ach => Arthrobacter chlorophenolicus
rsa => Renibacterium salmoninarum
krh => Kocuria rhizophila
mlu => Micrococcus luteus
bcv => Beutenbergia cavernae
bfa => Brachybacterium faecium
jde => Jonesia denitrificans
kse => Kytococcus sedentarius
xce => Xylanimonas cellulosilytica
pac => Propionibacterium acnes
nca => Nocardioides sp. JS614
tfu => Thermobifida fusca
tcu => Thermomonospora curvata
sro => Streptosporangium roseum
fra => Frankia sp. CcI3
fre => Frankia sp. EAN1pec
fal => Frankia alni
ace => Acidothermus cellulolyticus
nml => Nakamurella multipartita
kra => Kineococcus radiotolerans
sen => Saccharopolyspora erythraea
svi => Saccharomonospora viridis
ami => Actinosynnema mirum
stp => Salinispora tropica
saq => Salinispora arenicola
cai => Catenulispora acidiphila
blo => Bifidobacterium longum NCC2705
blj => Bifidobacterium longum DJO10A
bln => Bifidobacterium longum subsp. infantis ATCC 15697
bad => Bifidobacterium adolescentis
bla => Bifidobacterium animalis subsp. lactis AD011
blc => Bifidobacterium animalis subsp. lactis Bl-04
blt => Bifidobacterium animalis subsp. lactis DSM 10140
rxy => Rubrobacter xylanophilus
afo => Acidimicrobium ferrooxidans DSM 10331
ccu => Cryptobacterium curtum
shi => Slackia heliotrinireducens
apv => Atopobium parvulum
ele => Eggerthella lenta
ctr => Chlamydia trachomatis D/UW-3/CX (serovar D)
cta => Chlamydia trachomatis A/HAR-13 (serovar A)
ctb => Chlamydia trachomatis 434/Bu
ctl => Chlamydia trachomatis L2b/UCH-1/proctitis
ctj => Chlamydia trachomatis Jali20
cmu => Chlamydia muridarum
cpn => Chlamydophila pneumoniae CWL029
cpa => Chlamydophila pneumoniae AR39
cpj => Chlamydophila pneumoniae J138
cpt => Chlamydophila pneumoniae TW183
cca => Chlamydophila caviae
cab => Chlamydophila abortus
cfe => Chlamydophila felis
pcu => Candidatus Protochlamydia amoebophila
bbu => Borrelia burgdorferi B31
bbz => Borrelia burgdorferi ZS7
bga => Borrelia garinii
baf => Borrelia afzelii
btu => Borrelia turicatae
bhr => Borrelia hermsii
bdu => Borrelia duttonii
bre => Borrelia recurrentis
tpa => Treponema pallidum subsp. pallidum Nichols
tpp => Treponema pallidum subsp. pallidum SS14
tde => Treponema denticola
lil => Leptospira interrogans serovar lai
lic => Leptospira interrogans serovar Copenhageni
lbj => Leptospira borgpetersenii JB197
lbl => Leptospira borgpetersenii L550
lbi => Leptospira biflexa serovar Patoc Patoc 1 (Paris)
lbf => Leptospira biflexa serovar Patoc Patoc 1 (Ames)
bhy => Brachyspira hyodysenteriae
aba => Acidobacteria bacterium
aca => Acidobacterium capsulatum
sus => Solibacter usitatus
bth => Bacteroides thetaiotaomicron
bfr => Bacteroides fragilis YCH46
bfs => Bacteroides fragilis NCTC9343
bvu => Bacteroides vulgatus
pgi => Porphyromonas gingivalis W83
pgn => Porphyromonas gingivalis ATCC 33277
pdi => Parabacteroides distasonis
aps => Candidatus Azobacteroides pseudotrichonymphae
sru => Salinibacter ruber
rmr => Rhodothermus marinus
chu => Cytophaga hutchinsonii
dfe => Dyadobacter fermentans
cpi => Chitinophaga pinensis
phe => Pedobacter heparinus
gfo => Gramella forsetii
fjo => Flavobacterium johnsoniae
fps => Flavobacterium psychrophilum
fba => Flavobacteriaceae bacterium
coc => Capnocytophaga ochracea
rbi => Robiginitalea biformata
smg => Candidatus Sulcia muelleri GWSS
sms => Candidatus Sulcia muelleri SMDSEM
bbl => Blattabacterium sp. (Blattella germanica)
bpi => Blattabacterium sp. (Periplaneta americana)