diff --git a/dipy.org/pull/66/_sources/posts/2024/2024_08_21_kaustav_final_report.rst.txt b/dipy.org/pull/66/_sources/posts/2024/2024_08_21_kaustav_final_report.rst.txt index 9d0a376..8f96b18 100644 --- a/dipy.org/pull/66/_sources/posts/2024/2024_08_21_kaustav_final_report.rst.txt +++ b/dipy.org/pull/66/_sources/posts/2024/2024_08_21_kaustav_final_report.rst.txt @@ -150,7 +150,7 @@ For the transition phase, we're providing warnings instead of completely blockin The implementation of this decorator was a significant part of the project. You can find the full pull request for the decorator here: `PR #3239 `_ -After creating the decorator, we applied it systematically across various DIPY modules. This extensive work touched many parts of the codebase: +After creating the decorator, I applied it systematically across various DIPY modules. This extensive work touched many parts of the codebase: - **align** `PR #3249 `_: Applied to alignment algorithms. - **core** `PR #3251 `_: Updated core functionality of DIPY. @@ -200,6 +200,10 @@ Upon reviewing our image organization, it became apparent that the existing syst - Better tracking of image contributions over time - Improved ability to manage and update image assets +.. code-block:: text + + _static/images/gsoc/[year]/[name_of_contributor] + This reorganization sets the stage for more efficient image management in the future. For more information, refer to: `Issue #50 `_ @@ -218,7 +222,7 @@ You can find more details in: `Issue #21 1. Keyword-Only Argumentsc is being called as a positional argument when it should be a keyword argument.

For the transition phase, we’re providing warnings instead of completely blocking the function execution. This approach allows for a smoother migration, giving developers time to update their code while still maintaining functionality.

The implementation of this decorator was a significant part of the project. You can find the full pull request for the decorator here: PR #3239

-

After creating the decorator, we applied it systematically across various DIPY modules. This extensive work touched many parts of the codebase:

+

After creating the decorator, I applied it systematically across various DIPY modules. This extensive work touched many parts of the codebase:

  • align PR #3249: Applied to alignment algorithms.

  • core PR #3251: Updated core functionality of DIPY.

    • @@ -1175,6 +1175,9 @@

    b. Image Organization Improvement
    _static/images/gsoc/[year]/[name_of_contributor]
+
    +

    This reorganization sets the stage for more efficient image management in the future.

    For more information, refer to: Issue #50

    @@ -1190,7 +1193,7 @@

    c. DIPY Wiki Migration

    d. Adding Sidebars to Blog Page#

    -

    An enhancement suggested by the mentor was implemented: adding a sidebar to our blog.html page. Previously, the blog page lacked a sidebar, which made navigation less intuitive and user-friendly. The new sidebar significantly improves the blog’s usability by providing:

    +

    An enhancement suggested by my mentor was implemented: adding a sidebar to our blog.html page. Previously, the blog page lacked a sidebar, which made navigation less intuitive and user-friendly. The new sidebar significantly improves the blog’s usability by providing:

    • Quick access to important navigational elements

    • Categories for easy content classification

      • @@ -1344,36 +1347,35 @@

      Future Works

      1. Addition of Tutorials#

      -

      As part of our ongoing efforts to improve DIPY’s accessibility and user experience, I am planning to develop new tutorials. These tutorials will focus on two key areas:

      +

      As part of my ongoing efforts to improve DIPY’s accessibility and user experience, I am planning to develop new tutorials. These tutorials will focus on two key areas:

      a. 2D Registration#

      -

      The planned 2D registration tutorial will cover:

      +

      The 2D registration tutorial will cover:

        -

      • Overview of 2D registration algorithms in DIPY

        • -

      • Step-by-step guide for performing 2D registration

        • -

      • Practical examples and use cases

        • -

      • Tips for optimizing registration results

        • +

      • Overview of 2D Registration Algorithms: An explanation of the different 2D registration algorithms in DIPY, with a focus on when and how to use them.

        • +

      • Step-by-Step Guide: A detailed, step-by-step process for performing 2D registration using DIPY, making it easy to follow along.

        • +

      • Optimization Tips: Tips for getting the best results from 2D registration, including parameter adjustments and troubleshooting.

      b. Docker Usage#

      The Docker tutorial will include:

        -

      • Introduction to Docker and its benefits for DIPY users

        • -

      • Setting up Docker for use with DIPY

        • -

      • Running DIPY in a Docker container

        • -

      • Best practices for using DIPY with Docker

        • -

      • Troubleshooting common Docker-related issues

        • +

      • Introduction to Docker: An overview of Docker and why it is useful for DIPY users.

        • +

      • Setting Up Docker for DIPY: Instructions for setting up Docker specifically for DIPY, including installation and configuration.

        • +

      • Running DIPY in a Docker Container: How to run DIPY within a Docker container, with common commands and workflows.

        • +

      • Best Practices: Advice on how to use Docker with DIPY effectively, focusing on performance and resource management.

        • +

      • Troubleshooting: Common issues you might encounter with Docker and how to solve them.

      Objectives#

      -

      By adding these tutorials, we aim to:

      +

      By adding these tutorials, I aim to:

        -

      1. Lower the entry barrier for new DIPY users.

        2. -

      2. Provide clear, practical guidance on using DIPY’s features.

        3. -

      3. Encourage adoption of best practices in neuroimaging analysis.

        4. -

      4. Facilitate reproducible research through consistent environments.

        5. +

      5. Lower the Entry Barrier: Make it easier for new DIPY users to get started.

        6. +

      6. Provide Clear Guidance: Offer practical, easy-to-follow instructions on using DIPY.

        7. +

      7. Encourage Best Practices: Help users adopt best practices in neuroimaging analysis.

        8. +

      8. Support Reproducible Research: Teach users how to create consistent environments using Docker, which will help ensure reliable and reproducible results.

    diff --git a/dipy.org/pull/66/searchindex.js b/dipy.org/pull/66/searchindex.js index 1222d30..c8f047b 100644 --- a/dipy.org/pull/66/searchindex.js +++ b/dipy.org/pull/66/searchindex.js @@ -1 +1 @@ -Search.setIndex({"alltitles": {"1) DKI simulations on Dipy\u2019s master repository": [[7, "dki-simulations-on-dipy-s-master-repository"]], "1. Adding sidebar to blog page (dipy/dipy.org#53)": [[72, "adding-sidebar-to-blog-page-https-github-com-dipy-dipy-org-pull-53"]], "1. Addition of Tutorials": [[80, "addition-of-tutorials"]], "1. Blog Post migration (dipy/dipy.org#11)": [[72, "blog-post-migration-https-github-com-dipy-dipy-org-issues-11"]], "1. Keyword-Only Arguments": [[80, "keyword-only-arguments"], [80, "id1"]], "1.1) Import python modules and defining MRI parameters": [[7, "import-python-modules-and-defining-mri-parameters"]], "1.2) Defining biological parameters": [[7, "defining-biological-parameters"]], "1.3) Using DKI simulation main function": [[7, "using-dki-simulation-main-function"]], "2) Progresses on the development of the DKI reconstruction module": [[7, "progresses-on-the-development-of-the-dki-reconstruction-module"]], "2. Image Organization (dipy/dipy.org#50)": [[72, "image-organization-https-github-com-dipy-dipy-org-issues-50"]], "2. Lazy Loading": [[80, "lazy-loading"]], "2. Website Improvements": [[80, "website-improvements"]], "3) Next Steps": [[7, "next-steps"]], "3. Docker Integration": [[80, "docker-integration"]], "3. GSoC wiki posts migration (dipy/dipy.org#21)": [[72, "gsoc-wiki-posts-migration-https-github-com-dipy-dipy-org-issues-21"]], "Future Works": [[80, "future-work-title"]], "GSoC Weekly": [[80, "weekly-title"]], "Google Summer of Code Final Work Product": [[80, null]], "Objectives Completed": [[80, "objectives-completed-title"]], "Objectives in Progress": [[80, "objectives-progress-title"]], "Project Abstract": [[80, "project-abstract-title"]], "Proposed Objectives": [[80, "proposed-objectives-title"]], "Timeline": [[80, "timeline-title"]], "A Week of Unexpected Challenges": [[66, "a-week-of-unexpected-challenges"]], "A pythonic implementation of topup": [[29, "a-pythonic-implementation-of-topup"]], "About I\u00f1igo": [[55, "about-inigo"]], "About Myself": [[32, "about-myself"]], "About our Documentation": [[26, "about-our-documentation"]], "Accomplishing the first steps of the project proposal": [[8, "accomplishing-the-first-steps-of-the-project-proposal"]], "Add mutual information for non-rigid registration": [[29, "add-mutual-information-for-non-rigid-registration"]], "Adding Tests : Week 10": [[47, null]], "Addressing Missed Keyword Arguments": [[79, "addressing-missed-keyword-arguments"]], "Advances on the DKI based fiber direction estimates": [[12, "advances-on-the-dki-based-fiber-direction-estimates"]], "Advances on the implementation of DKI statistics": [[11, "advances-on-the-implementation-of-dki-statistics"]], "Advice": [[24, "advice"], [25, "advice"], [28, "advice"], [29, "advice"], [30, "advice"], [54, "advice"]], "After rebasing Problem #1": [[6, "after-rebasing-problem-1"]], "After rebasing Problem #2 - the right order to reconstruct the diffusion tensor": [[6, "after-rebasing-problem-2-the-right-order-to-reconstruct-the-diffusion-tensor"]], "And hey it\u2019s a separate django app!": [[23, "and-hey-it-s-a-separate-django-app"]], "Artifacts in Dipy\u2019s sample data Sherbrooke\u2019s 3 shells": [[9, null]], "Attempt to further improve the diffusion standard statistics": [[14, null]], "Before the Student Coding Period": [[4, "before-the-student-coding-period"]], "Benefits of Lazy Loading": [[80, "benefits-of-lazy-loading"]], "Blog": [[0, null]], "Blog Review": [[65, "blog-review"]], "Busy Week: PhD Applications and Moving Houses": [[76, "busy-week-phd-applications-and-moving-houses"]], "CTI Simulation and QTI tutorial : Week 3": [[37, null]], "Cache": [[21, "cache"]], "Calendar": [[1, null]], "Carbonate Account Setup, Experiment, Debug and Repeat: Week 5": [[40, null]], "Carbonate issues, GPU availability, Tensorflow errors: Week 10 & Week 11": [[48, null]], "Command-Line Interfaces:": [[27, "command-line-interfaces"]], "Community Bonding Period": [[18, "community-bonding-period"]], "Community Bonding Period Summary and first impressions": [[55, null]], "Community Bonding Period: Building the Foundation": [[56, "community-bonding-period-building-the-foundation"]], "Community Bonding and Week 1 Insights": [[32, null]], "Community Engagement": [[58, "community-engagement"]], "Community bonding and Project kickstart : Week 1": [[33, null]], "Comparison between mean kurtosis analytical and approximated solutions": [[11, "comparison-between-mean-kurtosis-analytical-and-approximated-solutions"]], "Comparison between radial kurtosis analytical and approximated solutions": [[11, "comparison-between-radial-kurtosis-analytical-and-approximated-solutions"]], "Comprehensive Testing and Bug Fixing": [[60, "comprehensive-testing-and-bug-fixing"]], "Conclusion": [[80, "conclusion"]], "Contact": [[26, "contact"]], "Creating a Docker Image for DIPY": [[78, "creating-a-docker-image-for-dipy"]], "Creating signal_predict Method: Testing Signal Generation": [[42, null]], "Current State of the Project:": [[27, "current-state-of-the-project"]], "Current Status": [[80, "current-status"], [80, "id3"]], "DIPY + FURY project ideas for GSoD\u201920": [[26, "dipy-fury-project-ideas-for-gsod-20"]], "DIPY Homepage:": [[27, "dipy-homepage"]], "DIPY support for DICOM files": [[25, "dipy-support-for-dicom-files"]], "DIPY-Tract-or-Treat: DIPY DTI Post-Processing Pipeline": [[28, "dipy-tract-or-treat-dipy-dti-post-processing-pipeline"]], "DKI based biological measures": [[16, "dki-based-biological-measures"]], "DKI based fiber direction estimates": [[11, "dki-based-fiber-direction-estimates"]], "DKI based fiber direction estimation methods": [[16, "dki-based-fiber-direction-estimation-methods"]], "DKI based simulations": [[16, "dki-based-simulations"]], "DKI reconstruction modules": [[16, "dki-reconstruction-modules"]], "Decorator Function Refinement": [[60, "decorator-function-refinement"]], "Decorator Implementation PR Fix": [[65, "decorator-implementation-pr-fix"]], "Decorator Implementation across Modules": [[62, "decorator-implementation-across-modules"]], "Decorator PR Fixes": [[68, "decorator-pr-fixes"], [70, "decorator-pr-fixes"]], "Deep Dive into VQ-VAE : Week 2": [[35, null]], "Design Matrix Implementation and Coding with PEP8: Week 5": [[41, null]], "Details of Backend Developed So Far": [[19, "details-of-backend-developed-so-far"]], "Details of content management system": [[20, "details-of-content-management-system"]], "Details of the frontend": [[20, "details-of-the-frontend"]], "Did I get stuck": [[47, "did-i-get-stuck"]], "Did I get stuck anywhere": [[32, "did-i-get-stuck-anywhere"], [34, "did-i-get-stuck-anywhere"], [35, "did-i-get-stuck-anywhere"], [37, "did-i-get-stuck-anywhere"], [38, "did-i-get-stuck-anywhere"], [40, "did-i-get-stuck-anywhere"], [42, "did-i-get-stuck-anywhere"], [44, "did-i-get-stuck-anywhere"], [45, "did-i-get-stuck-anywhere"], [48, "did-i-get-stuck-anywhere"], [49, "did-i-get-stuck-anywhere"], [51, "did-i-get-stuck-anywhere"], [55, "did-i-get-stuck-anywhere"], [57, "did-i-get-stuck-anywhere"], [59, "did-i-get-stuck-anywhere"], [61, "did-i-get-stuck-anywhere"], [63, "did-i-get-stuck-anywhere"], [64, "did-i-get-stuck-anywhere"], [67, "did-i-get-stuck-anywhere"], [69, "did-i-get-stuck-anywhere"], [71, "did-i-get-stuck-anywhere"], [73, "did-i-get-stuck-anywhere"], [75, "did-i-get-stuck-anywhere"], [77, "did-i-get-stuck-anywhere"]], "Did i get stuck this week": [[46, "did-i-get-stuck-this-week"]], "Difficulties & Challenges": [[60, "difficulties-challenges"], [62, "difficulties-challenges"], [65, "difficulties-challenges"], [68, "difficulties-challenges"], [70, "difficulties-challenges"], [72, "difficulties-challenges"], [74, "difficulties-challenges"]], "Diffusion Model results on pre-trained VQVAE latents of NFBS MRI Dataset: Week 6 & Week 7": [[43, null]], "Diffusion research continues: Week 4": [[39, null]], "Dockerfile Creation and Deployment": [[79, "dockerfile-creation-and-deployment"]], "Documentation Integration": [[21, "documentation-integration"]], "Documentation Updates": [[60, "documentation-updates"]], "Documentation that was developed:": [[27, "documentation-that-was-developed"]], "Doing Final Touch-Ups: Week 14": [[53, null]], "Enhancement": [[72, "enhancement"]], "Expanding the Decorator Implementation": [[58, "expanding-the-decorator-implementation"]], "Extend DIPY Horizon workflow": [[25, "extend-dipy-horizon-workflow"]], "Extend DIPY Horizon workflow for Visualization": [[28, "extend-dipy-horizon-workflow-for-visualization"], [29, "extend-dipy-horizon-workflow-for-visualization"]], "Extra steps accomplished": [[8, "extra-steps-accomplished"]], "Final Project Report": [[16, null]], "Final Thoughts": [[56, "final-thoughts"], [58, "final-thoughts"], [60, "final-thoughts"], [62, "final-thoughts"], [66, "final-thoughts"], [68, "final-thoughts"], [70, "final-thoughts"], [72, "final-thoughts"], [74, "final-thoughts"], [76, "final-thoughts"], [78, "final-thoughts"], [79, "final-thoughts"]], "Finalized experiments using both datasets: Week 12 & Week13": [[51, null]], "First Week into GSoC 2024: Building the AutoEncoder, writing the training loop": [[57, null]], "First post after acceptance! =)": [[4, null]], "First report (1st week of coding, challenges and ISMRM conference)": [[6, null]], "Fixing Tutorials for the Keyword Argument PR": [[76, "fixing-tutorials-for-the-keyword-argument-pr"]], "Function\u2019s Algorithm": [[10, "function-s-algorithm"]], "Further improvements on the diffusion standard statistics": [[13, null]], "Future directions of the DKI statistic implementation": [[11, "future-directions-of-the-dki-statistic-implementation"]], "Future directions of the DKI-ODF implementation": [[11, "future-directions-of-the-dki-odf-implementation"]], "GPU parallelization of DIPY algorithms": [[29, "gpu-parallelization-of-dipy-algorithms"]], "GSoD: High-level restructuring and end-user focus": [[27, null]], "Gallery Page": [[22, "gallery-page"]], "Generating Fit Functions : Week 8 & 9": [[46, null]], "Get Calendar": [[1, "get-calendar"]], "GitHub stats visualization": [[23, "github-stats-visualization"]], "Google Analytics": [[21, "google-analytics"]], "Google Season of Docs 2020": [[26, null]], "Google Summer of Code 2015 Announcement": [[3, null]], "Google Summer of Code 2018": [[24, null]], "Google Summer of Code 2020": [[25, null]], "Google Summer of Code 2021": [[28, null]], "Google Summer of Code 2022": [[29, null]], "Google Summer of Code 2023": [[30, null]], "Google Summer of Code 2024": [[54, null]], "Google Summer of Code Progress August 19": [[23, null]], "Google Summer of Code Progress August 7": [[22, null]], "Google Summer of Code Progress July 22": [[21, null]], "Google Summer of Code Progress June 10": [[19, null]], "Google Summer of Code Progress June 24": [[20, null]], "Google Summer of Code with Dipy": [[18, null]], "How did I get involved with DIPY": [[55, "how-did-i-get-involved-with-dipy"]], "How to become a part of DIPY\u2019s Google Summer of Code 2016": [[17, null]], "How to become a part of DIPY\u2019s Google Summer of Code 2018": [[24, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2018"]], "How to become a part of DIPY\u2019s Google Summer of Code 2020": [[25, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2020"]], "How to become a part of DIPY\u2019s Google Summer of Code 2021": [[28, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2021"]], "How to become a part of DIPY\u2019s Google Summer of Code 2022": [[29, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2022"]], "How to become a part of DIPY\u2019s Google Summer of Code 2023": [[30, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2023"]], "How to become a part of DIPY\u2019s Google Summer of Code 2024": [[54, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2024"]], "ISMRM Conference": [[6, "ismrm-conference"]], "Implementation Details": [[80, "implementation-details"]], "Implementation in python 1": [[11, "implementation-in-python-1"]], "Implementation in python 2": [[11, "implementation-in-python-2"]], "Implementation of DKI statistics is now complete!!!": [[12, "implementation-of-dki-statistics-is-now-complete"]], "Improve Consistency:": [[27, "improve-consistency"]], "Improving the speed performance of functions": [[11, "improving-the-speed-performance-of-functions"]], "Intro to Open-Source and GSoC": [[32, "intro-to-open-source-and-gsoc"]], "Introduction to DIPY": [[24, "introduction-to-dipy"], [25, "introduction-to-dipy"], [28, "introduction-to-dipy"], [29, "introduction-to-dipy"], [30, "introduction-to-dipy"], [54, "introduction-to-dipy"]], "Issues in dipy.org": [[72, "issues-in-dipy-org"]], "Journey of GSOC application & acceptance : Week 0": [[31, null]], "Last steps for the Google Summer of Code 2015": [[12, "last-steps-for-the-google-summer-of-code-2015"]], "Lazy Loading Demonstration": [[62, "lazy-loading-demonstration"]], "Lazy Loading Integration": [[58, "lazy-loading-integration"]], "Lazy Loading PR": [[68, "lazy-loading-pr"], [70, "lazy-loading-pr"]], "Lazy Loading Research": [[60, "lazy-loading-research"]], "Learning Docker": [[74, "learning-docker"]], "Learnings and Challenges:": [[27, "learnings-and-challenges"]], "Machine learning-based MRI registration": [[25, "machine-learning-based-mri-registration"]], "Making the Tests Work : Week 11": [[49, null]], "Mathematical framework": [[11, "mathematical-framework"]], "Medium Blogposts:": [[27, "medium-blogposts"]], "Mentors:": [[27, "mentors"]], "Mid-Term Summary": [[8, null]], "Modifying Test Signal Generation": [[44, null]], "My Journey Begins: Community Bonding Period with DIPY": [[56, null]], "My Journey Continues: Week 1 Progress with DIPY": [[58, null]], "My Journey Continues: Week 10 Progress with DIPY": [[76, null]], "My Journey Continues: Week 11 Progress with DIPY": [[78, null]], "My Journey Continues: Week 12 Progress with DIPY": [[79, null]], "My Journey Continues: Week 2 Progress with DIPY": [[60, null]], "My Journey Continues: Week 3 Progress with DIPY": [[62, null]], "My Journey Continues: Week 4 Progress with DIPY": [[65, null]], "My Journey Continues: Week 5 Progress with DIPY": [[66, null]], "My Journey Continues: Week 6 Progress with DIPY": [[68, null]], "My Journey Continues: Week 7 Progress with DIPY": [[70, null]], "My Journey Continues: Week 8 Progress with DIPY": [[72, null]], "My Journey Continues: Week 9 Progress with DIPY": [[74, null]], "News Posts": [[19, "news-posts"]], "Next Steps": [[66, "next-steps"], [79, "next-steps"], [80, "next-steps"], [80, "id2"], [80, "id4"]], "Next Week": [[60, "next-week"], [62, "next-week"], [65, "next-week"], [68, "next-week"], [70, "next-week"], [72, "next-week"], [74, "next-week"], [76, "next-week"], [78, "next-week"]], "Next steps": [[6, "next-steps"], [8, "next-steps"]], "Objectives": [[80, "objectives"]], "Organization: DIPY": [[27, "organization-dipy"]], "Outputs of CLI workflows:": [[27, "outputs-of-cli-workflows"]], "PIESNO": [[14, "piesno"]], "Peer Review Contributions": [[65, "peer-review-contributions"]], "Perpendicular directions samples relative to a given vector": [[10, null]], "Personal Note": [[4, "personal-note"]], "PhD Application Submitted": [[78, "phd-application-submitted"]], "PhD Applications": [[74, "phd-applications"]], "Population-based MRI Template Creation": [[28, "population-based-mri-template-creation"]], "Population-specific Tractography Bundle Atlas Creation": [[28, "population-specific-tractography-bundle-atlas-creation"]], "Preparing for Lazy Loading Implementation": [[66, "preparing-for-lazy-loading-implementation"]], "Preparing for Project Conclusion": [[79, "preparing-for-project-conclusion"]], "Problematic performance near to function singularities": [[15, "problematic-performance-near-to-function-singularities"]], "Progress Report (DKI simulations merged and DKI real data fitted)": [[7, null]], "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation": [[11, null], [12, null]], "Progress So Far": [[56, "progress-so-far"], [58, "progress-so-far"]], "Progress so far": [[20, "progress-so-far"], [21, "progress-so-far"], [22, "progress-so-far"]], "Progress summary": [[8, "progress-summary"]], "Project 1. Add mutual information for non-rigid registration": [[30, "project-1-add-mutual-information-for-non-rigid-registration"], [54, "project-1-add-mutual-information-for-non-rigid-registration"]], "Project 2. CUDA non-rigid registration": [[54, "project-2-cuda-non-rigid-registration"]], "Project 2. Generalized along tract analysis of fiber orientation dispersion": [[30, "project-2-generalized-along-tract-analysis-of-fiber-orientation-dispersion"]], "Project 3. Correlation Tensor Magnetic Resonance Imaging": [[30, "project-3-correlation-tensor-magnetic-resonance-imaging"]], "Project 3. DIPY algorithms Optimizations": [[54, "project-3-dipy-algorithms-optimizations"]], "Project 4. Creating Synthetic MRI data": [[30, "project-4-creating-synthetic-mri-data"]], "Project 4. Solving Issues in DIPY_HORIZON": [[54, "project-4-solving-issues-in-dipy-horizon"]], "Project 5. An optimal pythonic implementation of Susceptibility Distortion Correction using AP PA data": [[30, "project-5-an-optimal-pythonic-implementation-of-susceptibility-distortion-correction-using-ap-pa-data"]], "Project 5. Project ideas using AI/ML in Diffusion MRI processing": [[54, "project-5-project-ideas-using-ai-ml-in-diffusion-mri-processing"]], "Project 6. DIPY algorithms Optimizations": [[30, "project-6-dipy-algorithms-optimizations"]], "Project 6. Modernize DIPY Codebase": [[54, "project-6-modernize-dipy-codebase"]], "Project 7. Accelerated MRI viewer \u2013 Horizon": [[30, "project-7-accelerated-mri-viewer-horizon"]], "Project Ideas": [[54, "project-ideas"]], "Project Ideas (7)": [[30, "project-ideas-7"]], "Project Overview": [[18, "project-overview"]], "Project idea 1: High-level restructuring and end-user focus": [[26, "project-idea-1-high-level-restructuring-and-end-user-focus"]], "Project idea 2: [FURY] Create User and Developer Guides. Update missing docstrings/doctests": [[26, "project-idea-2-fury-create-user-and-developer-guides-update-missing-docstrings-doctests"]], "Project summary": [[16, "project-summary"]], "Project-Task 1: Enhancing Keyword-Only Arguments with Decorators": [[56, "project-task-1-enhancing-keyword-only-arguments-with-decorators"]], "Projects": [[17, "projects"], [24, "projects"], [25, "projects"], [26, "projects"], [28, "projects"], [29, "projects"]], "Projects in Details:": [[26, "projects-in-details"]], "Publications": [[19, "publications"]], "Re-Engineering Simulation Codes with the QTI Model and Design Matrix": [[38, null]], "Rebasing": [[6, "rebasing"]], "Refining Decorator Implementation": [[58, "refining-decorator-implementation"]], "Reflections and Gratitude": [[79, "reflections-and-gratitude"]], "Results": [[11, "results"]], "Search Engine Optimizations": [[21, "search-engine-optimizations"]], "Second Week into GSoC 2024: Refactoring the AutoEncoder, preliminary results": [[59, null]], "Short Description of the Work Done:": [[27, "short-description-of-the-work-done"]], "Signal Creation & Paper Research: Week2 Discoveries": [[34, null]], "Skills gained on GSoC": [[16, "skills-gained-on-gsoc"]], "Small Improvements/ Minor Fixes:": [[27, "small-improvements-minor-fixes"]], "So how did I make it?": [[18, "so-how-did-i-make-it"]], "Some more thoughts on the GSOC journey so far": [[19, "some-more-thoughts-on-the-gsoc-journey-so-far"]], "Start wrapping up - Test singularities of kurtosis statistics": [[15, null]], "Technical Writer:": [[27, "technical-writer"]], "Technical Writers": [[26, "technical-writers"]], "Testing and Continuous Integration": [[62, "testing-and-continuous-integration"]], "The Day": [[32, "the-day"]], "The Role of Decorators": [[56, "the-role-of-decorators"]], "Things coming up next week": [[46, "things-coming-up-next-week"]], "Things to do next week": [[47, "things-to-do-next-week"], [50, "things-to-do-next-week"]], "Third Week into GSoC 2024: Replicating training parameters, approaching replication": [[61, null]], "Time to start mapping brain connections and looking to brain properties in vivo": [[5, null]], "Tutorial Fixes PR Update": [[78, "tutorial-fixes-pr-update"]], "Tutorial Fixes Progress": [[79, "tutorial-fixes-progress"]], "Tutorials Page": [[22, "tutorials-page"]], "VQ-VAE results and study on Diffusion models : Week 3": [[36, null]], "VQVAE MONAI models & checkerboard artifacts: Week 8 & Week 9": [[45, null]], "Website Sections": [[19, "website-sections"]], "Week 10 into GSoC 2024: Validating the conditional VAE results": [[75, null]], "Week 11 into GSoC 2024: The Adversarial AutoEncoder": [[77, null]], "Week 4 into GSoC 2024: Weight transfer experiments, hardships, and results!": [[63, null]], "Week 5 into GSoC 2024: Vacation, starting with the conditional AutoEncoder": [[64, null]], "Week 6 into GSoC 2024: Stuck with the Variational AutoEncoder, problems with Keras": [[67, null]], "Week 7 into GSoC 2024: Starting to see the light at the end of the VAE": [[69, null]], "Week 8 into GSoC 2024: Further advances with the VAE model": [[71, null]], "Week 9 into GSoC 2024: The Conditional VAE implementation": [[73, null]], "Week12: Making Test Functions Work": [[50, null]], "Weekly Journey": [[80, "id8"]], "What I did this Week": [[41, "what-i-did-this-week"]], "What I did this week": [[32, "what-i-did-this-week"], [33, "what-i-did-this-week"], [34, "what-i-did-this-week"], [35, "what-i-did-this-week"], [36, "what-i-did-this-week"], [38, "what-i-did-this-week"], [39, "what-i-did-this-week"], [40, "what-i-did-this-week"], [42, "what-i-did-this-week"], [43, "what-i-did-this-week"], [44, "what-i-did-this-week"], [45, "what-i-did-this-week"], [46, "what-i-did-this-week"], [47, "what-i-did-this-week"], [48, "what-i-did-this-week"], [49, "what-i-did-this-week"], [50, "what-i-did-this-week"], [51, "what-i-did-this-week"], [52, "what-i-did-this-week"], [53, "what-i-did-this-week"], [57, "what-i-did-this-week"], [59, "what-i-did-this-week"], [61, "what-i-did-this-week"], [63, "what-i-did-this-week"], [64, "what-i-did-this-week"], [67, "what-i-did-this-week"], [69, "what-i-did-this-week"], [71, "what-i-did-this-week"], [73, "what-i-did-this-week"], [75, "what-i-did-this-week"], [77, "what-i-did-this-week"]], "What I did this week and in the Community Bonding Period": [[55, "what-i-did-this-week-and-in-the-community-bonding-period"]], "What I did this week:": [[37, "what-i-did-this-week"]], "What Is coming up next week": [[34, "what-is-coming-up-next-week"], [35, "what-is-coming-up-next-week"], [39, "what-is-coming-up-next-week"], [40, "what-is-coming-up-next-week"], [42, "what-is-coming-up-next-week"], [43, "what-is-coming-up-next-week"], [48, "what-is-coming-up-next-week"]], "What Is coming up next week:": [[37, "what-is-coming-up-next-week"]], "What are DIPY and FURY?": [[26, "what-are-dipy-and-fury"]], "What are Keyword-Only Arguments?": [[56, "what-are-keyword-only-arguments"]], "What is coming up Next Week": [[53, "what-is-coming-up-next-week"]], "What is coming up next Week": [[32, "what-is-coming-up-next-week"], [38, "what-is-coming-up-next-week"], [41, "what-is-coming-up-next-week"], [52, "what-is-coming-up-next-week"]], "What is coming up next week": [[36, "what-is-coming-up-next-week"], [44, "what-is-coming-up-next-week"], [45, "what-is-coming-up-next-week"], [49, "what-is-coming-up-next-week"], [51, "what-is-coming-up-next-week"], [55, "what-is-coming-up-next-week"], [57, "what-is-coming-up-next-week"], [59, "what-is-coming-up-next-week"], [61, "what-is-coming-up-next-week"], [63, "what-is-coming-up-next-week"], [64, "what-is-coming-up-next-week"], [67, "what-is-coming-up-next-week"], [69, "what-is-coming-up-next-week"], [71, "what-is-coming-up-next-week"], [73, "what-is-coming-up-next-week"], [75, "what-is-coming-up-next-week"], [77, "what-is-coming-up-next-week"]], "What next?": [[22, "what-next"]], "What\u2019s Next?": [[56, "whats-next"]], "What\u2019s next": [[20, "what-s-next"], [21, "what-s-next"]], "Writing Tests & Making Documentation: Week 13": [[52, null]], "a. 2D Registration": [[80, "a-2d-registration"]], "a. Blog Post Migration": [[80, "a-blog-post-migration"]], "b. Docker Usage": [[80, "b-docker-usage"]], "b. Image Organization Improvement": [[80, "b-image-organization-improvement"]], "c. DIPY Wiki Migration": [[80, "c-dipy-wiki-migration"]], "d. Adding Sidebars to Blog Page": [[80, "d-adding-sidebars-to-blog-page"]]}, "docnames": ["blog", "calendar", "index", "posts/2015/2015_01_15_eleftherios_gsoc_announcement", "posts/2015/2015_05_17_Rafael", "posts/2015/2015_05_24_Rafael", "posts/2015/2015_06_05_Rafael", "posts/2015/2015_06_19_Rafael", "posts/2015/2015_07_02_Rafael", "posts/2015/2015_07_08_Rafael", "posts/2015/2015_07_09_Rafael", "posts/2015/2015_07_24_Rafael", "posts/2015/2015_08_07_Rafael", "posts/2015/2015_08_13_Rafael", "posts/2015/2015_08_14_Rafael", "posts/2015/2015_08_16_Rafael", "posts/2015/2015_08_24_Rafael", "posts/2016/2016_02_01_eleftherios_gsoc_announcement", "posts/2016/2016_05_16_Bishakh", "posts/2016/2016_06_10_Bishakh", "posts/2016/2016_06_24_Bishakh", "posts/2016/2016_07_22_Bishakh", "posts/2016/2016_08_07_Bishakh", "posts/2016/2016_08_19_Bishakh", "posts/2018/2018_01_24_eleftherios_gsoc_announcement", "posts/2020/2020_02_05_serge_gsoc_announcement", "posts/2020/2020_05_04_serge_gsod_announcement", "posts/2020/2020_12_05_Areesha", "posts/2021/2021_01_15_serge_gsoc_announcement", "posts/2022/2022_04_05_serge_gsoc_announcement", "posts/2023/2023_02_02_serge_gsoc_announcement", "posts/2023/2023_05_19_vara_week0", "posts/2023/2023_05_29_Shilpi_Week_0_1", "posts/2023/2023_05_29_vara_week1", "posts/2023/2023_06_05_Shilpi_week2", "posts/2023/2023_06_05_vara_week2", "posts/2023/2023_06_12_vara_week3", "posts/2023/2023_06_13_Shipi_week3", "posts/2023/2023_06_19_Shilpi_week4", "posts/2023/2023_06_19_vara_week4", "posts/2023/2023_06_26_vara_week5", "posts/2023/2023_07_06_shilpi_week5", "posts/2023/2023_07_06_shilpi_week6", "posts/2023/2023_07_10_vara_week6_and_week7", "posts/2023/2023_07_12_Shilpi_week7", "posts/2023/2023_07_24_vara_week_8_9", "posts/2023/2023_07_27_Shilpi_week_8_9", "posts/2023/2023_07_31_Shilpi_week10", "posts/2023/2023_08_07_vara_week_10_11", "posts/2023/2023_08_08_Shilpi_week11", "posts/2023/2023_08_15_Shilpi_week12", "posts/2023/2023_08_21_vara_week_12_13", "posts/2023/2023_08_22_Shilpi_Week13", "posts/2023/2023_08_28_Shilpi_Week14", "posts/2024/2024_01_10_serge_gsoc_announcement", "posts/2024/2024_05_27_Inigo_week_0", "posts/2024/2024_05_27_kaustav_week0", "posts/2024/2024_05_31_Inigo_week_1", "posts/2024/2024_06_03_kaustav_week_1", "posts/2024/2024_06_07_Inigo_week_2", "posts/2024/2024_06_12_kaustav_week_2", "posts/2024/2024_06_14_Inigo_week_3", "posts/2024/2024_06_19_kaustav_week_3", "posts/2024/2024_06_21_Inigo_week_4", "posts/2024/2024_06_28_Inigo_week_5", "posts/2024/2024_06_30_kaustav_week_4", "posts/2024/2024_07_01_kaustav_week_5", "posts/2024/2024_07_06_Inigo_week_6", "posts/2024/2024_07_07_kaustav_week_6", "posts/2024/2024_07_12_Inigo_week_7", "posts/2024/2024_07_15_kaustav_week_7", "posts/2024/2024_07_19_Inigo_week_8", "posts/2024/2024_07_22_kaustav_week_8", "posts/2024/2024_07_26_Inigo_week_9", "posts/2024/2024_07_29_kaustav_week_9", "posts/2024/2024_08_02_Inigo_week_10", "posts/2024/2024_08_05_kaustav_week_10", "posts/2024/2024_08_09_Inigo_week_11", "posts/2024/2024_08_12_kaustav_week_11", "posts/2024/2024_08_19_kaustav_week_12", "posts/2024/2024_08_21_kaustav_final_report"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1}, "filenames": ["blog.rst", "calendar.rst", "index.rst", "posts/2015/2015_01_15_eleftherios_gsoc_announcement.rst", "posts/2015/2015_05_17_Rafael.rst", "posts/2015/2015_05_24_Rafael.rst", "posts/2015/2015_06_05_Rafael.rst", "posts/2015/2015_06_19_Rafael.rst", "posts/2015/2015_07_02_Rafael.rst", "posts/2015/2015_07_08_Rafael.rst", "posts/2015/2015_07_09_Rafael.rst", "posts/2015/2015_07_24_Rafael.rst", "posts/2015/2015_08_07_Rafael.rst", "posts/2015/2015_08_13_Rafael.rst", "posts/2015/2015_08_14_Rafael.rst", "posts/2015/2015_08_16_Rafael.rst", "posts/2015/2015_08_24_Rafael.rst", "posts/2016/2016_02_01_eleftherios_gsoc_announcement.rst", "posts/2016/2016_05_16_Bishakh.rst", "posts/2016/2016_06_10_Bishakh.rst", "posts/2016/2016_06_24_Bishakh.rst", "posts/2016/2016_07_22_Bishakh.rst", "posts/2016/2016_08_07_Bishakh.rst", "posts/2016/2016_08_19_Bishakh.rst", "posts/2018/2018_01_24_eleftherios_gsoc_announcement.rst", "posts/2020/2020_02_05_serge_gsoc_announcement.rst", "posts/2020/2020_05_04_serge_gsod_announcement.rst", "posts/2020/2020_12_05_Areesha.rst", "posts/2021/2021_01_15_serge_gsoc_announcement.rst", "posts/2022/2022_04_05_serge_gsoc_announcement.rst", "posts/2023/2023_02_02_serge_gsoc_announcement.rst", "posts/2023/2023_05_19_vara_week0.rst", "posts/2023/2023_05_29_Shilpi_Week_0_1.rst", "posts/2023/2023_05_29_vara_week1.rst", "posts/2023/2023_06_05_Shilpi_week2.rst", "posts/2023/2023_06_05_vara_week2.rst", "posts/2023/2023_06_12_vara_week3.rst", "posts/2023/2023_06_13_Shipi_week3.rst", "posts/2023/2023_06_19_Shilpi_week4.rst", "posts/2023/2023_06_19_vara_week4.rst", "posts/2023/2023_06_26_vara_week5.rst", "posts/2023/2023_07_06_shilpi_week5.rst", "posts/2023/2023_07_06_shilpi_week6.rst", "posts/2023/2023_07_10_vara_week6_and_week7.rst", "posts/2023/2023_07_12_Shilpi_week7.rst", "posts/2023/2023_07_24_vara_week_8_9.rst", "posts/2023/2023_07_27_Shilpi_week_8_9.rst", "posts/2023/2023_07_31_Shilpi_week10.rst", "posts/2023/2023_08_07_vara_week_10_11.rst", "posts/2023/2023_08_08_Shilpi_week11.rst", "posts/2023/2023_08_15_Shilpi_week12.rst", "posts/2023/2023_08_21_vara_week_12_13.rst", "posts/2023/2023_08_22_Shilpi_Week13.rst", "posts/2023/2023_08_28_Shilpi_Week14.rst", "posts/2024/2024_01_10_serge_gsoc_announcement.rst", "posts/2024/2024_05_27_Inigo_week_0.rst", "posts/2024/2024_05_27_kaustav_week0.rst", "posts/2024/2024_05_31_Inigo_week_1.rst", "posts/2024/2024_06_03_kaustav_week_1.rst", "posts/2024/2024_06_07_Inigo_week_2.rst", "posts/2024/2024_06_12_kaustav_week_2.rst", "posts/2024/2024_06_14_Inigo_week_3.rst", "posts/2024/2024_06_19_kaustav_week_3.rst", "posts/2024/2024_06_21_Inigo_week_4.rst", "posts/2024/2024_06_28_Inigo_week_5.rst", "posts/2024/2024_06_30_kaustav_week_4.rst", "posts/2024/2024_07_01_kaustav_week_5.rst", "posts/2024/2024_07_06_Inigo_week_6.rst", "posts/2024/2024_07_07_kaustav_week_6.rst", "posts/2024/2024_07_12_Inigo_week_7.rst", "posts/2024/2024_07_15_kaustav_week_7.rst", "posts/2024/2024_07_19_Inigo_week_8.rst", "posts/2024/2024_07_22_kaustav_week_8.rst", "posts/2024/2024_07_26_Inigo_week_9.rst", "posts/2024/2024_07_29_kaustav_week_9.rst", "posts/2024/2024_08_02_Inigo_week_10.rst", "posts/2024/2024_08_05_kaustav_week_10.rst", "posts/2024/2024_08_09_Inigo_week_11.rst", "posts/2024/2024_08_12_kaustav_week_11.rst", "posts/2024/2024_08_19_kaustav_week_12.rst", "posts/2024/2024_08_21_kaustav_final_report.rst"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [3, 5, 6, 8, 11, 12, 15, 16, 19, 22, 26, 27, 31, 32, 34, 35, 37, 39, 40, 41, 43, 45, 46, 47, 48, 49, 50, 51, 53, 55, 60, 62, 67, 72, 74, 77, 78, 79, 80], "0": [10, 14, 15, 16, 19, 21, 22, 27, 45, 46, 51, 56, 69, 70, 80], "0003": 70, "0013": [45, 51], "0015": 51, "0017": 70, "003": 70, "0031": 45, "0037": 45, "0067": 45, "01": 80, "02812095": 70, "03": 80, "05": 80, "06": 80, "07": 80, "08": 80, "0x13e1ce110": 70, "1": [5, 8, 9, 10, 12, 13, 14, 15, 16, 19, 21, 22, 27, 29, 40, 43, 45, 48, 51, 53, 60, 61, 62, 65, 68, 69, 70, 71, 73, 74], "10": [16, 26, 30, 43, 45, 80], "100": [36, 40, 43, 53, 70, 80], "1000": 14, "1002": 30, "1016": 30, "103533906": 17, "1059": 50, "108": 40, "1082": 20, "108989": 30, "10th": 18, "11": [16, 32, 80], "112": 40, "116605": 30, "12": [12, 16, 32, 80], "120": [69, 71], "125": 51, "128": [43, 51], "13": [16, 21, 70], "14": [11, 12], "140": 21, "15": [23, 62, 80], "150": 59, "156": 14, "16": 63, "161": 70, "17472072": 70, "1749802": 70, "175": [14, 30, 54], "18": 70, "18018944": 70, "1825": 32, "19": [7, 16, 80], "191": 70, "1d": [63, 64], "1e": 63, "1e10": 69, "1e3": 15, "1st": 56, "2": [5, 8, 10, 12, 13, 14, 15, 16, 19, 22, 34, 39, 40, 43, 45, 46, 47, 48, 55, 58, 61, 62, 64, 65, 68, 73, 75], "20": [19, 30, 70, 72], "200": [14, 21, 36, 40, 43], "2000": 14, "2003": 30, "2011": [15, 16], "2014": 11, "2015": [8, 72, 80], "2016": [18, 23, 24], "2019": 30, "2020": [27, 30], "2021": [30, 32, 55], "2023": 31, "2024": [32, 56, 80], "20758655": 70, "21": 80, "210": 70, "21098605": 70, "211": 30, "22": [18, 70, 80], "2211": 27, "2212": 27, "2218": 27, "2220": 27, "2244": 27, "2246": 27, "2248": 27, "2261": 27, "2273": 27, "2275": 27, "2277": 27, "2282": 27, "2283": 27, "2284": 27, "2286": 27, "2287": 27, "2292": 27, "2294": 27, "2295": 27, "2296": 27, "23": 18, "23rd": 6, "24hr": 45, "256": 51, "26": 80, "2665": 70, "268": 14, "27": [70, 80], "2749": 32, "2816": 38, "28938": 30, "28th": 27, "29": [70, 80], "2d": [24, 25, 43, 47, 63, 73], "2e": [40, 43], "2nd": [17, 32], "3": [8, 10, 11, 12, 14, 15, 16, 21, 22, 27, 32, 43, 44, 45, 46, 60, 61, 63, 68, 70, 73], "30": [12, 21, 75, 80], "300": [40, 43, 51, 75], "30am": 32, "32": [12, 51, 63], "3239": [56, 60, 68, 80], "3249": 80, "3251": 80, "3252": 80, "3253": 80, "3254": [68, 70, 80], "3255": 80, "3256": 80, "3257": [68, 70, 80], "3258": 80, "3259": 80, "3260": 80, "3261": 80, "3262": 80, "3263": 80, "3288": [68, 70], "33": 70, "3306": [76, 79], "3322": [79, 80], "3324": 79, "35": 70, "350": [30, 54], "359": 51, "360": 19, "37": 70, "390": 14, "3d": [3, 5, 17, 24, 25, 26, 27, 28, 29, 30, 39, 40, 43, 45, 47, 51, 54, 64], "3r": 45, "3rd": [24, 32], "4": [10, 14, 15, 16, 27, 40, 43, 46, 61, 68, 80], "40": [17, 70, 78], "400": [14, 45], "404": [21, 22], "42": 12, "43": 70, "44444": 70, "45pm": 32, "46": 45, "49": 32, "49286891": 70, "4d": [8, 25, 26, 27, 28, 29, 30, 54], "4th": [25, 32], "5": [10, 14, 15, 24, 34, 45, 51, 53, 70, 80], "50": [40, 69, 80], "500": 51, "50442139": 70, "510": 14, "53": 80, "561": 68, "582": 4, "5e": 15, "5m": 45, "5th": 28, "6": [10, 11, 12, 14, 44, 46, 50, 63, 80], "60": [21, 78], "600k": 43, "62819702": 70, "64": [51, 73], "640": 19, "7": [11, 12, 54, 73, 75, 80], "70": 7, "72778443": 70, "7284468": 70, "75": 61, "75861633": 70, "7th": [29, 30, 54], "8": [11, 62, 80], "81": 32, "810": 14, "85": 15, "870": 30, "88": 27, "888": [30, 65], "896": 65, "897": 65, "9": [15, 16, 19, 20, 48, 80], "90": [15, 27, 54, 70], "99614616": 70, "A": [5, 11, 17, 20, 26, 30, 35, 36, 47, 54, 65, 68, 70, 72, 80], "And": [18, 20, 21, 22, 25, 32, 35, 38, 41, 46, 48, 50], "As": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 22, 23, 26, 31, 32, 33, 36, 39, 41, 43, 45, 51, 52, 55, 56, 62, 63, 66, 69, 73, 74, 75, 76, 77, 78, 79, 80], "At": [4, 5, 8, 11, 26, 27, 39, 46, 53], "Be": [24, 25, 28, 29, 30, 54], "But": [18, 19, 21, 31, 32, 37, 42, 44, 46, 48, 68, 73], "By": [5, 7, 8, 35, 38, 45, 56, 62, 77, 79, 80], "For": [3, 5, 6, 7, 8, 10, 11, 12, 15, 16, 17, 18, 19, 20, 21, 24, 25, 28, 29, 30, 33, 40, 41, 45, 51, 54, 63, 72, 73, 74, 75, 77, 80], "IT": 48, "If": [3, 6, 16, 26, 29, 30, 34, 36, 37, 40, 47, 52, 54, 67, 73, 78], "In": [3, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 21, 24, 26, 29, 30, 31, 32, 35, 36, 37, 45, 47, 54, 55, 56, 58, 60, 61, 63, 65, 72, 73, 74, 75, 77, 78, 79, 80], "It": [5, 6, 17, 19, 20, 21, 25, 26, 28, 29, 30, 32, 33, 35, 37, 40, 45, 49, 54, 55, 60, 61, 63, 72, 74, 75, 77, 79, 80], "No": [4, 24, 37, 38, 47, 65], "Not": [30, 46, 54], "Of": 63, "On": [5, 26, 40, 53, 63, 69, 73, 74, 76, 78, 80], "One": [17, 19, 20, 21, 34, 43, 44, 47, 52, 70, 72, 74, 80], "That": [32, 55], "The": [3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 34, 36, 37, 38, 39, 42, 43, 44, 45, 47, 50, 51, 53, 54, 55, 58, 59, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 74, 75, 76, 78, 79, 80], "Their": [72, 74, 76, 79], "Then": [18, 20, 21, 22, 46, 57], "There": [18, 19, 20, 21, 26, 72], "These": [5, 8, 10, 12, 13, 14, 16, 21, 30, 31, 32, 36, 40, 45, 47, 49, 51, 55, 60, 69, 72, 78, 79, 80], "To": [3, 5, 6, 7, 8, 10, 13, 15, 18, 19, 20, 21, 27, 30, 32, 47, 49, 54, 56, 60, 63, 67, 72, 73, 75, 77, 80], "Will": [20, 21], "With": [12, 16, 31, 56, 59, 60, 62, 68, 76], "_": [70, 77, 80], "__": 38, "__all__": 80, "__file__": 80, "__getattr__": 80, "__init__": 80, "__lazy_dir__": 80, "__name__": 80, "__str__": 21, "_perpendicular_directions_temp_": 53, "_static": 72, "a100": 36, "aae": 77, "ab": 15, "abil": [63, 80], "abl": [5, 12, 15, 16, 24, 32, 40, 41, 46, 47, 49, 50, 51, 52, 55, 57, 62, 63, 64, 66, 67, 68, 70, 71, 73, 74, 75, 76, 79], "about": [3, 4, 5, 17, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 46, 54, 56, 58, 60, 61, 64, 66, 67, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "abov": [11, 12, 14, 15, 36, 45], "absolut": [22, 32, 77], "academ": [31, 74], "acceler": [24, 25, 26, 28, 29, 54, 61], "accept": [63, 65, 78], "access": [16, 19, 30, 36, 45, 48, 52, 69, 72, 79, 80], "accommod": [48, 50, 54], "accomplish": [6, 7, 16, 47, 56, 74, 76], "accord": [6, 8, 11, 15, 16, 19, 41, 50, 56, 71, 73], "accordingli": [47, 48, 76], "account": [5, 6, 7, 36, 47, 48], "accumul": 40, "accur": [3, 5, 8, 14, 38, 54, 72, 76], "accuraci": 54, "achiev": [7, 8, 16, 18, 20, 23, 35, 36, 38, 40, 43, 45, 51, 53, 56, 62, 63, 73, 79, 80], "acquaint": [3, 17, 56], "acquir": [7, 12, 13, 30], "acquisit": [7, 30], "across": [24, 25, 26, 27, 28, 29, 30, 31, 35, 45, 51, 54, 57, 58, 60, 80], "action": [54, 72, 80], "activ": [21, 39, 53, 73], "actor": 17, "actual": [22, 32, 44, 46, 50, 53, 58, 61, 62, 66, 75, 80], "acut": 55, "ad": [5, 7, 8, 11, 12, 13, 16, 20, 21, 24, 25, 26, 27, 28, 29, 30, 37, 39, 49, 52, 53, 54, 63, 67, 69, 70, 71, 76, 79], "adam": [40, 43], "adapt": [16, 30, 61, 63, 64, 67, 72, 80], "add": [1, 4, 6, 11, 13, 17, 20, 21, 23, 24, 25, 28, 50, 70, 71, 80], "addit": [7, 8, 11, 17, 20, 23, 25, 27, 29, 30, 45, 54, 58, 60, 65, 72, 74, 75, 78], "addition": [3, 17, 24, 25, 26, 27, 28, 29, 30, 39, 45, 48, 51, 53, 54, 62, 72, 76, 80], "address": [6, 26, 33, 45, 57, 62, 63, 65, 72, 80], "adequ": 14, "adjac": 10, "adjust": [14, 15, 61, 65, 69, 72, 79], "admin": [18, 19, 20, 21, 22], "admir": 78, "adopt": [26, 45, 54, 80], "adult": 30, "adv": 77, "advanc": [8, 16, 17, 25, 30, 37, 60, 69, 73], "advantag": [3, 24, 80], "adversari": [73, 75], "advis": [38, 58, 67], "ae": [55, 61, 63, 67], "affect": [17, 55, 71, 79], "affin": [27, 29, 30, 54], "affine_transform": [43, 51], "after": [5, 8, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 32, 41, 44, 45, 46, 47, 49, 50, 55, 59, 61, 62, 63, 68, 69, 72, 73, 75, 80], "afzali": 24, "ag": [17, 33, 55, 57, 64, 73, 77], "again": [14, 42, 44, 46, 48, 75, 76], "against": [64, 73, 75], "ageml": 55, "agenda": 33, "aggarw": [24, 30], "agre": [8, 55, 61], "ahead": [31, 45, 56, 58, 68, 72, 74, 76, 78], "ai": [10, 31], "aim": [12, 18, 27, 53, 54, 74, 76, 78, 80], "airport": 64, "ak": [8, 12, 13, 14], "al": [15, 16, 17], "ala": [40, 70], "alexandr": 17, "algorithm": [3, 5, 8, 11, 12, 14, 17, 21, 24, 71, 73, 80], "align": [5, 7, 10, 11, 15, 16, 25, 33, 62, 71, 73, 80], "all": [3, 4, 5, 6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 36, 37, 40, 42, 43, 44, 45, 46, 47, 48, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 62, 63, 65, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80], "all_doc_displai": [20, 21], "all_doc_link": 21, "all_li": 22, "all_link": 22, "all_major_sect": 22, "all_minor_sect": 22, "all_versions_in_github": 21, "allclos": 50, "allow": [3, 4, 7, 8, 16, 17, 19, 20, 21, 24, 25, 28, 29, 30, 40, 54, 56, 57, 60, 65, 68, 71, 72, 73, 77, 80], "allowed_attr": [19, 21], "allowed_html_tag": [19, 21], "allowfullscreen": 19, "almost": [4, 12, 19, 20, 47, 53], "alon": [36, 45, 51], "along": [11, 19, 31, 35, 45, 64, 73, 79], "alongsid": [43, 60], "alreadi": [3, 7, 8, 11, 12, 17, 19, 24, 25, 28, 29, 30, 32, 37, 38, 41, 42, 47, 49, 50, 51, 54, 63, 67, 70, 71, 76], "also": [1, 3, 4, 5, 6, 7, 8, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 29, 30, 32, 33, 34, 35, 36, 37, 38, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 61, 62, 63, 64, 65, 67, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "altern": [5, 8, 45], "although": [15, 18, 20, 22, 26, 40, 41, 43, 45, 51, 78], "alwai": [5, 19, 32, 36, 46, 54, 74, 76, 78], "alzheim": 55, "am": [4, 6, 7, 8, 9, 10, 15, 16, 18, 19, 21, 31, 32, 55, 56, 57, 58, 61, 62, 63, 65, 67, 68, 69, 70, 72, 73, 75, 77, 79, 80], "amaz": [6, 13, 16, 18, 59, 63, 79], "among": [17, 28, 80], "amount": [14, 30, 76], "amplitud": 11, "an": [3, 4, 5, 6, 7, 8, 9, 11, 12, 15, 16, 17, 18, 19, 21, 22, 24, 25, 26, 27, 28, 29, 31, 32, 33, 35, 36, 39, 40, 41, 45, 46, 48, 50, 54, 55, 56, 57, 58, 63, 64, 65, 66, 67, 68, 70, 71, 72, 73, 74, 76, 77, 79, 80], "analys": [11, 16], "analysi": [3, 11, 12, 15, 17, 21, 24, 25, 26, 27, 28, 29, 33, 36, 54, 56, 80], "analyt": [8, 10, 15, 16, 18, 28], "analyz": [15, 44, 47, 51, 70], "anatom": [25, 28, 51], "anatomi": [3, 25, 26, 27, 28, 29, 30, 54], "andersson": 30, "angl": [10, 15, 27, 35, 46, 70], "angular": 7, "ani": [10, 17, 19, 20, 23, 26, 27, 30, 32, 36, 37, 40, 43, 51, 54, 56, 58, 59, 60, 62, 64, 65, 66, 71, 72, 73, 77, 80], "anim": [3, 26, 77], "anisotrop": [46, 47, 52], "anisotropi": [7, 8, 12, 13, 25, 28, 73], "anneal": 69, "announc": [21, 62, 72, 80], "annual": 6, "anoth": [18, 19, 21, 22, 32, 44, 51, 57, 58, 60, 72, 73, 74, 76, 78, 80], "answer": 36, "anterior": 51, "anthoni": [17, 24, 25, 28, 29, 30, 54], "anticip": 76, "anyhow": 43, "anymor": 50, "anyth": [18, 31, 72], "anywai": 77, "anywher": [19, 20, 47], "apart": 35, "api": [3, 19, 20, 21, 23, 30, 40, 80], "app": 21, "appar": [27, 49, 50, 80], "appear": [30, 50, 54], "append": [21, 22], "appli": [4, 7, 17, 24, 25, 28, 29, 30, 31, 54, 62, 63, 68, 70, 71, 74, 76, 78, 80], "applic": [3, 5, 17, 18, 24, 26, 30, 62, 68, 73, 75, 80], "appreci": 76, "approach": [7, 8, 11, 14, 26, 30, 34, 40, 41, 44, 65, 66, 67, 73, 80], "appropri": [34, 37, 41], "approv": 80, "approxim": [43, 61], "april": 18, "apt": 80, "ar": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 27, 32, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 50, 51, 53, 54, 55, 57, 58, 59, 62, 63, 64, 65, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80], "arbitrari": 19, "architectur": [40, 43, 45, 48, 55, 63, 71, 75, 77], "archiv": [72, 80], "area": [30, 41, 56, 60, 76, 80], "areesha": 27, "areeshatariq02": 27, "arg": [19, 21, 70], "argu": 75, "argument": [21, 24, 49, 54, 68, 70, 74, 78], "ariel": [3, 6, 17, 24, 26, 27], "around": [11, 14, 31, 32, 43, 45, 63, 71], "arrai": [32, 57, 63, 70], "arrang": [5, 42], "arriv": 64, "art": [6, 8, 24, 25, 26, 28, 29, 30, 51, 54], "artefact": [11, 27], "artifact": [11, 13, 14, 16, 17, 43], "artifici": 7, "asap": 70, "ashburn": 30, "asid": [55, 63], "ask": [24, 25, 28, 29, 30, 36, 44, 48, 54, 70], "aspect": [35, 80], "assert": [50, 53], "asset": 80, "assign": [32, 48, 70], "assist": 60, "associ": 72, "assum": [7, 35, 63, 70], "assumpt": 30, "assur": [3, 17, 24], "async": 21, "attach": 80, "attach_stub": 80, "attempt": 52, "attend": 6, "attent": [27, 39, 72], "attentionblock": 39, "attract": [27, 55], "attribut": [21, 51, 72, 75, 77], "audio": 35, "auth": [18, 19], "authent": 19, "author": [35, 44, 45, 46, 64, 72, 73, 75], "auto": [21, 30, 35, 54], "auto_now_add": 21, "auto_tutori": 26, "autoencod": [55, 61, 63, 69, 73, 75], "autom": [20, 24, 54, 79, 80], "automat": [4, 5, 6, 8, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 46], "autoregress": [35, 36], "avail": [3, 12, 17, 24, 27, 28, 29, 30, 31, 54, 63], "averag": [11, 45], "avoid": [8, 11, 69], "awai": 45, "await": 68, "awesom": [4, 23, 32], "axcalib": 24, "axi": [7, 10, 11, 73], "axial": [7, 8, 11, 12, 13, 14, 47, 49, 50], "axon": [5, 16], "b": [3, 7, 14, 16, 17, 30, 45, 46, 47, 51], "b0s_mask": 70, "b1": 47, "b10": 51, "b12": 51, "b2": 47, "b5": 51, "back": [20, 21, 32, 58, 76, 77], "backend": [18, 21], "background": [8, 11, 14, 51], "background_mask": 14, "baggag": 64, "balanc": 74, "ball": 24, "bangalor": 32, "bar": 20, "barrier": 80, "base": [3, 5, 7, 8, 15, 17, 21, 24, 27, 29, 30, 33, 34, 36, 39, 40, 48, 51, 54, 58, 71, 72, 73, 77, 79, 80], "base_url": [20, 21, 22], "basi": [5, 7, 10], "basic": [3, 6, 7, 17, 20, 24, 25, 26, 27, 28, 29, 30, 32, 33, 39, 47, 49, 50, 54, 57, 64, 70, 71, 74, 75], "basqu": [55, 73], "batch": [40, 45, 51, 69], "batch_siz": [43, 45, 51], "batchnorm": 48, "battl": 32, "beauti": [3, 22], "beautifulsoup": 22, "becam": [63, 80], "becaus": [17, 18, 19, 34, 38, 42, 44, 46, 50, 51, 52, 57, 59, 61, 63, 64, 67, 69, 70, 71, 73, 75, 77], "becom": [31, 57], "been": [4, 7, 11, 17, 19, 21, 26, 27, 30, 32, 35, 36, 45, 46, 47, 48, 51, 54, 55, 56, 58, 60, 62, 64, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "befor": [7, 12, 13, 14, 16, 17, 18, 24, 25, 27, 28, 29, 30, 32, 33, 35, 40, 44, 45, 46, 53, 54], "began": 31, "begin": [32, 58, 66, 74, 80], "beginn": [24, 25, 28, 29, 30, 54, 74], "begun": [3, 19, 32, 58], "behav": [63, 67], "behavior": [56, 59, 63, 75, 80], "behind": [27, 34, 37, 67, 73, 76], "being": [11, 13, 14, 16, 27, 43, 44, 46, 49, 50, 51, 55, 63, 67, 68, 73, 80], "belong": [19, 73, 75, 77], "below": [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 24, 36, 43, 45, 51, 63, 69, 70, 75, 77], "benchmark": [3, 17, 30, 54], "benefici": 54, "benefit": [3, 30, 62, 66, 72], "best": [18, 20, 22, 30, 32, 40, 43, 45, 51, 54, 75, 78, 80], "beta": 71, "better": [4, 5, 7, 15, 20, 21, 26, 29, 30, 42, 43, 45, 61, 72, 73, 75, 80], "between": [6, 7, 8, 10, 14, 15, 37, 38, 39, 43, 45, 63, 67, 73, 75, 77], "bia": 7, "bibtex": 19, "bibtexpars": 19, "big": [36, 40, 67, 69, 72], "bigger": [55, 71], "biggest": 70, "bihan": 17, "bind": 70, "biobizkaia": 55, "biolog": 5, "biomed": [30, 55], "biophys": [7, 8, 12, 16, 17, 30], "biospher": 73, "bit": [17, 18, 20, 32, 35, 37, 40, 42, 55, 59, 61, 63, 66, 67, 69, 71, 73, 74, 77, 78], "black": 43, "bleach": [19, 21], "blend": 74, "blob": 45, "block": [39, 43, 63, 72, 75, 80], "blog": [27, 32, 33, 35, 36, 40, 43, 48, 73, 75], "blogpost": 18, "blogspot": [72, 80], "bloomington": 48, "blue": [11, 15, 51], "blurri": [43, 51], "blurrier": [33, 43], "bn": 45, "bob": 17, "bodi": [19, 21, 22], "body_html": [19, 21], "body_markdown": [19, 21], "bond": [5, 6, 8, 58, 80], "bonu": 24, "book": [3, 17, 19, 24, 25, 28, 29, 30, 54], "boolean": [8, 70], "boost": [26, 54, 80], "bootstrap": 17, "both": [5, 7, 12, 14, 24, 26, 30, 40, 43, 45, 47, 60, 61, 62, 63, 72, 73, 74, 75, 76, 78, 80], "bottleneck": 54, "bouraima": 79, "boura\u00efma": 65, "brain": [3, 4, 7, 8, 11, 12, 13, 14, 16, 17, 24, 30, 33, 43, 45, 51, 55], "bramsh": [25, 28, 29], "branch": [6, 18, 20, 21, 32, 62], "brat": 45, "break": [74, 77, 80], "breakthrough": 36, "breez": 32, "brett": 3, "brief": 56, "briefli": 55, "bring": [24, 25, 26, 28, 29, 30, 32, 44, 54, 57, 62], "broad": 21, "broadcast": 32, "broader": 56, "broken": [50, 61], "brows": [72, 80], "browser": 40, "brunch": 5, "brush": 35, "bs_doc": 22, "bsc": 55, "bten": 32, "btensor": [32, 37], "bug": [16, 21, 54, 58, 66, 80], "bugfix": [24, 25, 28, 29, 30, 54], "build": [18, 20, 21, 24, 27, 32, 58, 60, 66, 74, 78, 79, 80], "built": [18, 21, 22, 24, 26, 72], "bunch": [32, 36, 38], "bundl": [25, 29, 61, 73, 75, 77], "bundle_1_fib": 73, "bundle_2_fib": 73, "busi": 61, "busier": 74, "button": [17, 21], "bval": [32, 49], "bvec": [32, 49], "bypass": 35, "c": [29, 30, 44, 54], "ca": 73, "cach": [20, 80], "cache_pag": 21, "calcul": [44, 45, 47, 50, 53], "calgari": 51, "call": [7, 14, 17, 18, 19, 21, 24, 31, 32, 45, 47, 49, 57, 59, 63, 67, 70, 73, 79, 80], "callabl": 70, "callosum": [5, 12, 16], "calm": 32, "cambridg": 4, "came": [31, 44, 74, 78], "campina": 51, "can": [1, 3, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 36, 37, 38, 40, 43, 44, 45, 47, 50, 53, 54, 56, 58, 59, 61, 62, 63, 64, 67, 68, 69, 70, 71, 73, 74, 75, 77, 78, 79, 80], "canada": 30, "candid": [24, 25, 28, 29, 30, 54], "cannot": [4, 5], "capabl": [24, 27, 33, 35, 43, 51, 54, 60, 62, 63], "capac": 28, "captur": [32, 35, 37, 43, 45, 51, 63, 69, 73, 75], "card": 21, "care": [11, 19, 40, 50, 57, 61, 70, 74, 79], "career": 31, "carefulli": [65, 72, 79], "carlson": 8, "carous": 20, "carousel": 21, "carri": [7, 33, 43, 45, 51, 55], "case": [3, 5, 11, 15, 17, 37, 44, 46, 47, 50, 52, 53, 54, 60, 63, 64, 73, 75, 77, 80], "cat": [73, 77], "categor": [35, 36, 73, 75, 77], "categori": [30, 54, 72, 77, 80], "caus": [6, 11, 14, 45, 59, 67, 72, 78], "cc": 51, "cc359": 51, "ccti": [44, 46, 47], "cd": 80, "cellular": 7, "cenir": [12, 13, 14], "center": 61, "central": [72, 80], "certain": 49, "cgan": 73, "chalk": 33, "challeng": [18, 24, 26, 41, 58, 63, 75, 76, 77, 78, 79], "chanc": 56, "chandio": [25, 28, 29, 30], "chang": [4, 6, 19, 20, 21, 22, 23, 26, 30, 38, 39, 41, 42, 45, 46, 47, 48, 49, 50, 53, 56, 58, 60, 65, 69, 72, 74, 76, 78, 80], "channel": [24, 25, 26, 28, 29, 30, 40, 45, 51, 54, 56, 63], "chaotic": [72, 80], "chapter": 19, "character": [5, 34], "characterist": [67, 69, 75], "charfield": 21, "charm": [17, 24], "chart": 23, "chat": [26, 56], "check": [15, 16, 19, 20, 21, 24, 30, 32, 35, 44, 48, 51, 54, 55, 63, 65, 68, 72, 73, 75, 77, 79], "checkerboard": 43, "checkout": [1, 6], "checkpoint": 45, "chigurupati": [30, 54], "choic": 77, "chose": 73, "chosen": 77, "christoph": 17, "ci": [58, 62, 65, 70, 80], "cifar": 35, "cifar10": 39, "circumfer": 10, "cite": 19, "cl": 50, "clarif": [70, 75], "clariti": [54, 80], "class": [7, 8, 19, 21, 26, 38, 41, 46, 47, 49, 56, 57, 67, 70, 77], "class_": 22, "classic": 17, "classif": 80, "classifi": 3, "claus": 70, "clean": [19, 20, 21, 29, 53, 56, 59, 77, 80], "cleanup": 18, "clear": [21, 60, 72, 75, 79, 80], "clearer": 80, "clearli": 45, "cleaver": 11, "cli": [26, 30], "click": [20, 32], "clinic": [5, 30, 55], "clip": 69, "close": [17, 26, 38, 51, 63, 68, 73, 77], "closer": [44, 62], "closest": [27, 36, 37], "cloud": 17, "cls_fit_cti": 47, "club": 18, "cluster": [21, 24, 48, 55, 61, 73, 75, 77], "cm": 20, "cnn": 25, "co": 25, "code": [5, 7, 8, 11, 13, 15, 16, 26, 27, 32, 34, 35, 36, 39, 40, 42, 43, 44, 46, 48, 51, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 77], "codebas": [24, 25, 26, 28, 29, 30, 32, 39, 40, 43, 53, 56, 58, 60, 62, 74, 76, 79, 80], "codehilit": [19, 21], "codespel": 58, "collabor": [6, 16, 52, 58, 79, 80], "collaps": [33, 35, 36], "collat": [35, 39], "colleagu": [8, 11, 69], "collect": [47, 72], "colleg": [18, 31, 32], "color": [35, 73], "colormap": 16, "column": 45, "com": [17, 19, 20, 21, 27, 38], "combin": [5, 17, 24, 28, 32, 36, 46, 51], "come": [19, 20, 30, 58, 74, 78, 79], "comfort": [27, 30, 31, 54], "command": [5, 11, 14, 18, 20, 24, 25, 26, 28, 29, 40], "comment": [16, 26, 53, 62], "commit": [18, 20, 32, 54, 74], "common": [17, 29, 30, 43, 63, 73, 80], "common_fit_method": 50, "commun": [5, 6, 8, 16, 24, 25, 26, 27, 62, 68, 70, 72, 74, 76, 78, 79, 80], "compar": [12, 13, 14, 15, 29, 30, 41, 45, 50, 51, 54, 61, 63, 73, 75], "comparison": [7, 15, 30, 51], "compart": [7, 24, 34], "compartment": 7, "compat": [7, 12, 30, 79, 80], "compel": [3, 17], "competit": [31, 32], "compil": [6, 19, 30, 40, 54, 57], "complet": [3, 4, 7, 8, 11, 19, 21, 26, 27, 32, 37, 39, 41, 44, 45, 53, 62, 68, 70, 75, 78], "complex": [8, 36, 37, 43, 45, 49, 50, 51, 54, 71, 72, 76], "compli": [41, 62], "compon": [7, 17, 24, 30, 34, 38, 43, 45, 47, 54, 71, 78, 80], "comprehens": [17, 24, 25, 28, 29, 30, 54, 58, 66, 80], "compress": [36, 67], "compris": 34, "compromis": 71, "comput": [4, 5, 6, 7, 8, 10, 11, 12, 14, 15, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 49, 54, 55, 67, 69, 75, 77], "computation": [8, 11], "concaten": [32, 39, 63, 77], "concept": [26, 27, 32, 45, 62, 69, 74, 80], "concern": [60, 62, 63, 80], "conclud": 54, "conclus": [35, 44], "concret": [8, 12, 16], "cond1": 15, "condit": [30, 36, 39, 63, 67, 71, 77, 80], "conduct": [33, 35, 40, 53, 66, 72, 80], "confer": [8, 19], "confid": [30, 31, 54, 74], "configur": [48, 74, 76, 78, 79, 80], "confirm": [32, 72], "conflict": [6, 78], "congrat": 4, "congratul": 32, "connect": [4, 12, 17, 25, 40, 55, 56, 63, 64, 69], "connectom": [3, 12, 13, 16, 17], "consequ": [13, 45, 50], "consid": [7, 8, 13, 15, 17, 24, 25, 26, 28, 29, 30, 47, 54], "consider": [42, 44, 46, 47, 49, 50], "consist": [8, 26, 39, 51, 57, 63, 69, 72, 80], "consolid": [72, 80], "constant": [14, 20, 27, 75], "constantli": 67, "constitut": 39, "constrain": [27, 69, 71], "construct": [10, 37, 49], "consum": [41, 72, 76], "contact": [17, 29, 30, 44, 46, 54], "contain": [8, 16, 19, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 54, 61, 74, 79, 80], "container": [74, 79], "contamin": 70, "content": [18, 19, 21, 22, 26, 72, 80], "context": [20, 21, 31, 37, 55, 72, 74], "context_processor": 20, "continu": [6, 16, 17, 18, 24, 25, 27, 28, 29, 30, 36, 40, 51, 54, 55, 56, 64, 67, 71, 73, 75, 77, 80], "contrast": [30, 45], "contribut": [3, 11, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 32, 45, 54, 55, 56, 57, 72, 78, 79, 80], "contributor": [5, 21, 54, 55, 58, 60, 72, 79, 80], "control": [32, 64, 75], "conv": 40, "conv1d": 61, "conv2d": 39, "conveni": [59, 75], "convent": [30, 51, 63], "converg": [45, 51, 59], "convers": [25, 26, 37, 44, 46, 49], "convert": [7, 11, 19, 25, 50, 72], "convert_positional_to_keyword": 70, "convinc": [43, 51], "convolut": [35, 36, 39, 43, 45, 59, 63, 64, 69], "cook": 75, "cool": 20, "coordin": [7, 10, 25, 28, 29, 70], "copi": 23, "core": [10, 21, 26, 80], "coron": 30, "corpu": [5, 12, 16], "correct": [3, 6, 13, 15, 16, 17, 21, 38, 42, 44, 46, 47, 60, 67, 68, 70, 75], "correctli": [36, 42, 44, 47, 55, 62, 70, 72, 74, 75, 76, 78], "correl": [3, 73], "correspond": [7, 11, 19, 51, 54, 72], "corrupt": [9, 11], "cote": 30, "could": [4, 11, 18, 31, 32, 34, 37, 44, 46, 47, 48, 49, 50, 51, 55, 62, 64, 66, 67, 69, 71, 75], "couldn": [32, 39, 48, 50], "countri": [24, 25, 26, 28, 29, 30, 54, 55, 73], "coupl": [3, 7, 8, 12, 16, 23, 31, 32, 35, 39, 43, 57], "courag": 31, "cours": [17, 21, 32, 63, 74], "coursera": 32, "covari": [41, 42, 44, 46, 47, 50, 52], "cover": [5, 16, 80], "coverag": [5, 53], "cpu": [30, 48, 54], "craft": 78, "crazi": 63, "creat": [3, 4, 6, 11, 12, 16, 17, 20, 21, 23, 24, 25, 27, 28, 31, 32, 34, 37, 41, 44, 46, 49, 50, 52, 53, 55, 72, 74, 76, 79, 80], "createel": 21, "creation": [74, 80], "creativ": 3, "criteria": 15, "critic": [32, 56, 80], "cross": [3, 5, 7, 10, 11, 15, 16, 24, 26, 51, 80], "crucial": [38, 56, 58, 62, 72, 76, 78, 79, 80], "csa": 27, "csd": 27, "css": 23, "ct": 55, "cti": [32, 34, 38, 41, 42, 46, 47, 49, 50, 53], "cti_design_matrix": 44, "cti_param": 50, "cti_pr": 41, "cti_pred_sign": 47, "cti_return": 50, "cti_test": [37, 38], "cuda": [29, 30], "cudipi": [29, 30, 54], "cultur": 56, "cumul": 34, "curiou": [32, 67], "current": [3, 4, 5, 6, 7, 9, 11, 16, 17, 20, 21, 24, 26, 29, 30, 31, 32, 39, 40, 43, 44, 51, 52, 53, 54, 56, 62, 72, 75], "curv": [32, 43, 45, 51, 74], "curvatur": 45, "custom": [18, 19, 20, 21, 40, 59, 61, 63, 74], "cut": [29, 32], "cvae": [73, 75], "cvt": 53, "cwl": 50, "cyber": 55, "cylind": 24, "cython": [11, 16, 17, 24, 25, 29, 30, 54, 70], "c\u00f4t\u00e9": 17, "d": [20, 21, 26, 30, 32, 42, 44, 50, 77], "d3": 75, "d3j": 18, "d4": 75, "d_a": 77, "d_flat": 44, "d_r": 77, "dai": [6, 19, 36, 39, 64, 70, 74, 78, 79], "dashboard": [20, 32, 52], "data": [3, 8, 11, 12, 13, 14, 16, 17, 18, 21, 23, 24, 25, 26, 27, 28, 29, 33, 35, 36, 37, 45, 47, 49, 50, 51, 52, 53, 54, 55, 57, 64, 67, 69, 70, 71, 73, 75, 77, 80], "databas": [20, 21], "datagener": 48, "dataload": 48, "dataset": [3, 5, 7, 8, 9, 11, 12, 13, 14, 16, 17, 24, 27, 30, 31, 33, 35, 40, 45, 55, 57, 61, 63, 71, 73, 75, 80], "dataset_us": 51, "date": [19, 20, 21, 76, 79, 80], "datetim": [19, 21], "datetimefield": 21, "david": 24, "dayananda": 32, "dde": 34, "ddim": 39, "ddpm": [36, 39, 51], "deal": [45, 72], "debug": [4, 5, 6, 16, 48, 51, 69], "decai": [46, 61], "decemb": 27, "decent": [19, 71, 73], "decid": [8, 11, 13, 14, 16, 31, 40, 42, 43, 44, 45, 46, 47, 50, 62, 63, 64, 73, 75], "decis": [17, 47, 67], "decod": [35, 36, 45, 57, 59, 63, 67, 75, 77], "decompos": 50, "decompose_tensor": 44, "decomposit": [6, 50], "deconvolut": [27, 45], "decor": [21, 50, 80], "decreas": [39, 61, 69, 80], "dedic": [8, 16, 22, 26, 48, 60, 65, 72, 80], "deep": [25, 31, 33, 45, 59, 75, 76], "deeper": [38, 53, 56, 74], "deeplearn": 48, "def": [19, 20, 21, 22, 70, 80], "default": [4, 14, 21, 24, 27, 40], "default_descript": 21, "default_keyword": 21, "default_logo_url": 21, "default_titl": 21, "defin": [10, 11, 35, 48, 55, 75], "definit": [4, 16, 31, 48, 51], "deform": 25, "degre": [7, 15, 32, 54], "deka": 80, "delai": [58, 62, 64, 80], "delet": 21, "delic": 74, "deliv": [35, 36, 45, 51, 64], "demand": [7, 8, 11, 73, 74, 80], "demo": [26, 80], "demonstr": [3, 17], "denois": [13, 14, 17, 21, 24, 27, 36, 39, 40, 54, 80], "dens": [24, 59, 61], "densiti": 5, "depend": [7, 11, 14, 16, 17, 45, 55, 56, 73, 74, 76, 78, 79, 80], "depict": 45, "deploi": 26, "deploy": [18, 20, 80], "depth": [38, 61, 63], "deriv": [5, 16, 49, 50, 73, 75], "describ": [5, 8, 11, 12, 15, 16, 17, 26, 40, 61, 69], "descript": [3, 11, 17, 21, 22, 24, 25, 26, 28, 29, 30, 42, 54], "design": [18, 19, 21, 27, 28, 37, 40, 42, 46, 58, 59, 80], "design_matrix": 70, "desir": [38, 39, 43, 45, 52, 63, 64, 73, 75], "despit": [12, 13, 14, 26, 48, 51, 63, 69, 76, 78], "destin": 64, "detail": [3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 17, 24, 25, 28, 29, 30, 35, 36, 37, 40, 50, 51, 54, 71, 72], "detect": [3, 11, 14, 15, 16, 17, 79], "determin": [18, 19, 49], "determinist": [24, 27, 36], "dev": [55, 80], "devel": 26, "develop": [3, 6, 8, 14, 15, 16, 17, 18, 20, 21, 23, 24, 25, 28, 29, 30, 31, 54, 55, 56, 63, 66, 72, 74, 76, 79, 80], "deviat": [7, 11, 14, 69], "devic": 21, "devis": 61, "di": 10, "diag": 6, "diagram": 75, "dictionari": 21, "didn": [32, 34, 37, 38, 42, 44, 45, 46, 47, 49, 51, 52, 60, 66, 70, 72], "diffeomorph": [25, 27], "differ": [5, 6, 7, 11, 14, 15, 17, 18, 19, 20, 24, 25, 28, 29, 30, 32, 34, 35, 38, 41, 43, 45, 46, 47, 49, 50, 51, 53, 54, 59, 63, 65, 66, 67, 72, 73, 78, 80], "differenti": 46, "difficult": [36, 72], "difficulti": [3, 17, 24, 25, 28, 29, 30, 54], "diffus": [3, 5, 7, 8, 9, 15, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 37, 40, 42, 44, 45, 46, 49, 50, 51, 52, 53, 55], "dig": 35, "digit": [25, 40], "dimens": [39, 45, 51, 63, 71, 73, 77], "dimension": [61, 75], "dimensionless": 11, "dipc": [55, 61], "dipi": [1, 3, 4, 5, 6, 8, 10, 11, 12, 14, 16, 19, 20, 21, 22, 23, 31, 32, 38, 43, 45, 47, 51, 57, 59, 61], "dipy_data": 27, "dipy_horizon": [25, 28, 29], "dipy_web": [19, 20, 21, 27], "dir": [20, 21, 80], "direct": [3, 5, 7, 8, 15, 17, 19, 32, 50, 80], "directli": [10, 11, 13, 17, 24, 25, 28, 29, 30, 32, 50, 54, 67], "directori": [40, 72], "dirti": 32, "discontinu": 15, "discord": 26, "discov": [59, 72], "discret": [33, 35, 47], "discrimin": [73, 77], "discuss": [4, 6, 8, 11, 18, 26, 30, 35, 36, 39, 54, 56, 58, 69, 73, 75], "diseas": [17, 55], "disentangl": 71, "dispers": 11, "displai": [19, 20, 21, 22, 45, 72], "disrupt": 66, "distanc": [36, 77], "distinct": 73, "distinguish": 77, "distract": 32, "distribut": [3, 11, 16, 25, 28, 33, 35, 36, 40, 44, 45, 67, 69, 77], "distributionlambda": 36, "distributionstrategi": 48, "distrubutionallambda": 35, "div": [19, 22], "dive": [32, 56, 66, 74], "diverg": 67, "divid": [40, 42, 46], "divis": 46, "django": [17, 18, 19, 20, 21, 26], "dki": [3, 5, 6, 8, 13, 14, 17, 25, 27, 37, 41, 46, 47], "dki_test": 44, "dm": [40, 43], "dm3d": 51, "dmri": [3, 21, 24, 25, 27, 28, 29, 30], "do": [3, 6, 17, 19, 21, 26, 32, 36, 38, 44, 45, 46, 52, 57, 62, 63, 67, 70, 73, 74, 75, 77, 78], "doc": [17, 20, 21, 22, 27, 32, 72, 80], "doc_exampl": 22, "docker": [55, 72, 76, 79], "dockerfil": [55, 74, 80], "docstr": [54, 62, 80], "doctor": 26, "document": [8, 17, 18, 20, 22, 24, 25, 28, 29, 30, 34, 37, 40, 49, 51, 53, 54, 56, 58, 61, 68, 70, 72, 74, 76, 80], "documentation_pag": 21, "documentation_repo_nam": [20, 21, 22], "documentation_repo_own": [20, 21, 22], "documentationlink": [20, 21, 22], "doe": [11, 24, 25, 28, 29, 30, 35, 40, 43, 54, 59, 67, 73, 74, 75], "doesn": [35, 37, 66], "dog": 73, "doi": 30, "domain": 77, "don": [42, 43, 44, 45, 61, 71], "done": [3, 4, 5, 6, 7, 8, 10, 11, 12, 14, 15, 16, 19, 21, 22, 30, 32, 35, 41, 42, 44, 46, 48, 51, 52, 54, 67, 69, 76, 78, 79], "donostia": 61, "dorsal": 51, "dot": [6, 24], "doubl": [30, 48], "doubt": 70, "dougherti": 17, "down": [31, 32, 50, 70, 74, 77], "downgrad": 48, "download": 53, "downsampl": [36, 39, 43, 45], "dr": [6, 78], "draft": [50, 74, 76, 77], "dramat": [12, 16], "drastic": [40, 73], "draw": [23, 35, 80], "dream": 78, "dreamt": 18, "drive": [3, 62, 68, 70, 72], "driven": 26, "dromba": 55, "drop": [32, 67], "dropdown": 21, "dry": 20, "dt": 7, "dtd": [46, 47, 52, 53], "dti": [3, 5, 7, 11, 12, 13, 17, 25, 27, 37, 70, 73], "due": [8, 11, 27, 32, 36, 39, 50, 53, 54, 62, 73, 75, 78], "duplic": 8, "dure": [4, 5, 6, 8, 11, 15, 16, 24, 25, 27, 28, 29, 30, 31, 32, 36, 54, 55, 56, 58, 69, 75, 76, 79, 80], "dw": 7, "dwi": 3, "dxx": 44, "dyi": 44, "dynam": [17, 20, 22, 26, 80], "dzz": 44, "e": [3, 7, 8, 10, 11, 15, 17, 25, 30, 32, 36, 40, 43, 51, 54, 67, 70, 77], "each": [3, 5, 7, 8, 10, 15, 16, 19, 22, 39, 40, 45, 46, 47, 51, 63, 65, 69, 72, 73, 75, 80], "eager": [56, 72, 74], "eagerli": 78, "earli": [18, 26, 33, 52, 73], "earlier": [36, 48, 66, 74, 76, 78], "earliest": 66, "eas": [56, 57, 80], "easi": [11, 21, 24, 25, 26, 27, 32, 44, 59, 61, 67, 73, 79, 80], "easier": [27, 49, 69, 72, 73, 75, 78, 80], "easiest": 63, "easili": [11, 21, 23, 29, 30, 54, 72, 74, 80], "echo": 30, "ecosystem": 54, "eddi": 17, "edit": [19, 20, 21, 22, 27, 46, 55], "editor": [19, 20], "educ": [26, 80], "effect": [3, 17, 24, 25, 28, 29, 30, 35, 36, 40, 43, 45, 54, 60, 63, 71, 74, 75, 80], "efficaci": 36, "effici": [17, 45, 54, 56, 57, 58, 59, 62, 80], "effort": [24, 37, 40, 41, 54, 60, 63, 72, 78, 80], "eigen": [42, 50], "eigenvalu": [6, 15, 42, 44, 53], "eigenvalue1": 6, "eigenvalue2": 6, "eigenvalue3": 6, "eigenvector": [6, 44, 50], "eigenvector1": 6, "eigenvector2": 6, "eigenvector3": 6, "eighth": 72, "either": [37, 48], "eleftherio": [3, 8, 17, 24, 25, 26, 27, 78], "element": [5, 7, 11, 40, 42, 44, 45, 46, 47, 50, 52, 53, 63, 72, 80], "elev": 54, "elimin": [52, 65, 70], "ellipsoid": 5, "ellipt": 8, "elorriaga": [55, 79], "els": [19, 22, 46, 70], "em": [29, 30], "email": [18, 19, 32], "emb": 19, "embed": [19, 35, 45, 72], "emploi": 80, "enabl": [3, 21, 24, 25, 28, 29, 80], "encapsul": 67, "encod": [30, 34, 35, 36, 37, 43, 45, 51, 57, 59, 63, 67, 69, 73, 77], "encount": [49, 72, 79], "encourag": [55, 71, 74, 76, 80], "end": [5, 12, 15, 16, 22, 23, 32, 33, 35, 40, 46, 48, 50, 58, 79], "energi": [32, 76], "enforc": [56, 69], "engag": [26, 27, 72, 80], "engin": [20, 24, 32, 55], "enhanc": [17, 18, 24, 25, 26, 28, 29, 30, 54, 58, 60, 62, 65, 68, 70, 80], "enjoi": 31, "enlighten": 63, "enough": [55, 63, 73, 77], "enrich": [56, 65], "ensur": [16, 46, 47, 49, 53, 54, 56, 58, 60, 62, 65, 66, 72, 74, 76, 77, 78, 79, 80], "enter": [19, 22], "entir": [33, 37, 53, 72], "entri": 80, "environ": [17, 18, 40, 55, 56, 74, 78, 79, 80], "ep": 15, "epoch": [40, 43, 59, 69, 71, 73], "epsilon": [15, 69], "eq": 10, "equal": [11, 15, 51, 60, 74], "equat": [10, 54, 71], "equival": [36, 45], "er": 15, "eric": 17, "erron": 51, "error": [4, 6, 40, 50, 51, 53, 56, 62, 63, 65, 68, 70, 71, 74, 75, 77, 80], "especi": [19, 24, 74, 76, 80], "essenti": [6, 37, 74, 80], "establish": [7, 8], "estim": [3, 5, 7, 8, 10, 13, 14, 15, 17, 30, 35, 36, 37], "et": [15, 16, 17], "etc": [3, 20, 21, 24, 25, 28, 29, 30, 32, 35, 40, 49, 53, 54, 73], "eudx": 27, "eval": [42, 44, 50, 53], "evalu": [6, 7, 10, 11, 16, 21, 40], "evec": [42, 44], "even": [11, 21, 32, 47, 51, 52, 63, 64, 70, 73, 76], "evenli": 11, "event": [1, 20], "eventu": [40, 48], "everi": [18, 19, 20, 21, 26, 36, 45, 49, 51, 53, 75], "everyon": [4, 55, 56, 58, 60, 62, 64, 65, 66, 68, 70, 72, 74, 76, 78, 79], "everyth": [20, 24, 47, 52, 53], "evid": 30, "exact": [11, 69], "exactli": [11, 32, 38, 42, 46, 47, 49], "examin": [50, 53], "exampl": [3, 5, 6, 7, 8, 11, 12, 14, 15, 16, 17, 22, 24, 26, 29, 30, 40, 47, 54, 56, 60, 67, 73, 74, 76, 80], "example_bs_doc": 22, "example_dict": 22, "example_json": 22, "example_respons": 22, "example_titl": 22, "example_url": 22, "examples_built": 22, "examples_div": 22, "examples_index": [17, 22], "examples_list": 22, "excel": 17, "except": [20, 21, 45, 63], "excess": 67, "exchang": 19, "excit": [4, 8, 17, 32, 55, 56, 58, 60, 63, 66, 74, 78, 79], "exclud": [11, 20, 40, 45], "execut": [3, 17, 24, 79, 80], "exhaust": 76, "exist": [3, 24, 28, 29, 30, 32, 33, 37, 45, 51, 54, 56, 62, 66, 72, 80], "exit": 4, "exp": 19, "expand": [3, 11, 22], "expans": [11, 34, 58], "expect": [5, 6, 7, 8, 13, 14, 17, 24, 25, 28, 29, 30, 32, 38, 42, 44, 46, 47, 49, 50, 54, 56, 59, 63, 66, 67, 80], "experi": [16, 17, 26, 27, 28, 30, 32, 33, 35, 36, 39, 43, 45, 47, 48, 54, 55, 56, 59, 61, 65, 71, 72, 74, 75, 77, 79, 80], "experienc": 80, "expert": [5, 6, 11, 53], "expertis": [3, 17, 24, 25, 26, 28, 29, 30, 54, 69], "explain": 26, "explan": [26, 45, 60, 67], "explicit": 80, "explicitli": 80, "explod": [67, 69], "exploit": 27, "explor": [4, 16, 17, 31, 32, 33, 36, 63, 67, 69, 72, 74, 80], "exploratori": 33, "expon": 67, "exponenti": [67, 69], "expos": [26, 27], "express": [11, 34], "extend": [17, 21, 24, 30, 43], "extens": [7, 17, 19, 21, 26, 41, 49, 80], "extent": 8, "extern": [17, 70, 72], "extra": [7, 16, 17, 30, 36, 50, 53, 54, 68], "extract": [11, 12, 17, 19, 22, 26, 28, 33, 36], "extrem": [15, 24], "ey": 51, "f": [6, 43], "fa": [7, 8, 12, 13, 25, 28], "face": [4, 60, 62, 65, 66, 70, 75, 79], "facebook": [20, 21], "facil": [25, 28, 29], "facilit": [8, 26, 35, 79, 80], "fact": [5, 11, 18, 34, 36, 50, 52], "factor": [40, 43, 44, 46, 47, 49, 50, 53], "fadnavi": [25, 28, 29, 30], "fail": [6, 53], "failur": [4, 78], "fairli": 73, "fallback": 21, "fals": [19, 21, 22], "familiar": [16, 17, 18, 24, 25, 28, 29, 30, 33, 54, 55, 57, 77], "fanci": 32, "far": [4, 5, 8, 11, 45], "fashion": 57, "fast": [24, 30, 32, 75], "faster": [8, 11, 36, 45, 51, 54, 80], "fc1": 63, "feasibl": [11, 63], "featur": [8, 11, 17, 18, 26, 29, 32, 47, 54, 55, 56, 63, 68, 70, 71, 73, 80], "feed": [20, 21, 57, 63], "feedback": [6, 8, 19, 53, 54, 58, 69, 72, 74, 80], "feel": [18, 30, 32, 54], "fell": 66, "fellow": [66, 79], "fellowship": [17, 24, 25, 28, 29, 30, 54], "felt": [32, 46, 49], "fetch": [19, 21, 22, 27], "fetcher": 53, "few": [17, 26, 27, 31, 32, 43, 44, 70, 74], "fewer": 19, "fiber": [5, 7, 8, 15, 27, 73, 75, 77], "fibercup": [55, 57, 59, 63, 71, 73, 75], "fibrosi": 17, "fid": 40, "field": [6, 24, 25, 26, 28, 29, 30, 31, 54, 55, 78], "fiereman": [16, 17], "fifth": 66, "fig": [9, 10], "fight": 77, "figur": [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 24, 32, 42, 44, 46, 47, 50, 52, 63, 68, 69, 75, 77], "file": [6, 28, 29, 34, 37, 38, 46, 47, 48, 49, 53, 61, 62, 63, 70, 72, 80], "filedialogu": 17, "fill": [66, 79], "filter": [19, 20, 21, 22, 24, 27, 28, 31, 45, 61, 75], "final": [6, 7, 8, 10, 11, 12, 14, 17, 18, 23, 36, 39, 40, 52, 59, 63, 69, 77], "find": [6, 11, 16, 22, 26, 32, 35, 36, 39, 65, 66, 67, 71, 72, 75, 78, 80], "find_al": 22, "findal": 19, "finfo": 15, "finish": [5, 12, 16, 26, 34, 37, 50, 52, 53, 55, 57, 59, 70, 78], "finta": 61, "fire": 32, "firefox": 40, "first": [3, 5, 7, 9, 10, 12, 14, 15, 16, 17, 18, 26, 31, 32, 33, 35, 36, 42, 43, 45, 48, 51, 56, 58, 62, 63, 67, 69, 74], "firstli": [31, 50], "fit": [8, 11, 13, 16, 17, 24, 31, 38, 40, 41, 47, 49, 50, 57, 70], "fit_method": 70, "fix": [4, 20, 21, 24, 25, 28, 29, 30, 46, 47, 50, 53, 54, 56, 58, 62, 74, 75, 80], "fjson": [21, 22], "flag": 65, "flatten": 63, "flexibl": [20, 26, 80], "flight": 64, "float": 50, "focu": [17, 19, 24, 29, 30, 31, 45, 49, 53, 54, 56, 59, 63, 75, 76, 80], "focus": [21, 32, 41, 71, 74, 75, 78, 79, 80], "folder": [17, 23, 72], "folk": 32, "follow": [4, 5, 6, 8, 10, 11, 14, 15, 16, 24, 26, 27, 32, 38, 39, 40, 43, 44, 45, 51, 53, 54, 56, 61, 63, 67, 72, 75, 78, 80], "food": 75, "fool": [73, 77], "footprint": [62, 80], "forc": 77, "forefront": 54, "foreground": 51, "fork": [6, 55], "form": [19, 73], "format": [7, 21, 22, 25, 28, 29, 41, 44, 46, 56, 57, 61, 62, 72], "former": 45, "formula": [11, 15, 32, 47, 51], "fortun": [6, 11, 31], "forum": [30, 54, 56], "forward": [31, 32, 36, 40, 43, 46, 49, 56, 58, 62, 68, 70, 72, 74, 76, 78, 79, 80], "fought": 77, "found": [7, 8, 12, 16, 18, 19, 21, 24, 25, 26, 28, 29, 34, 59, 63, 64, 67, 73, 74, 75, 77, 80], "foundat": [18, 24, 32, 58, 60, 74, 80], "four": [7, 11], "fourth": [8, 34, 65], "fraction": [7, 8, 12, 13, 16, 46, 70, 73], "fragment": 24, "frame": 10, "framebord": 19, "framework": [3, 8, 16, 24, 25, 27, 28, 29, 30, 54, 73, 75, 77], "frank": 18, "free": [21, 24, 25, 26, 28, 29, 30, 54, 70], "freedom": 54, "freeli": 59, "freewatertensormodel": 70, "frequent": 18, "friendli": [24, 25, 27, 28, 29, 30, 40, 54, 72, 80], "from": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35, 36, 38, 39, 40, 45, 46, 47, 48, 49, 50, 51, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 67, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "from_3x3_to_6x1": [44, 50], "from_a_6x6_to_21x1": 49, "from_lower_triangular": [11, 44], "from_qte_to_cti": 53, "front": [31, 74, 76, 78], "frontend": 19, "fruit": 70, "full": [12, 15, 17, 21, 29, 30, 54, 55, 66, 67, 73, 74, 80], "fulli": [58, 63, 69, 78, 79], "fun": [3, 32, 70], "func": 70, "function": [3, 6, 8, 16, 18, 21, 25, 26, 28, 29, 30, 32, 33, 38, 40, 42, 43, 44, 45, 47, 48, 49, 51, 52, 53, 54, 56, 58, 62, 63, 64, 66, 68, 69, 70, 71, 72, 75, 79, 80], "fur": [73, 77], "furi": [30, 65, 78], "further": [8, 17, 26, 31, 33, 35, 40, 41, 45, 52, 54, 58, 75, 80], "furthermor": 80, "fuse": 55, "fusion": 25, "futur": [4, 16, 35, 51, 69, 72, 77, 78, 79], "futurist": [17, 24], "fvtk": 3, "fwdm": 70, "fwdti": 70, "fwdti_param": 70, "fwefit": 70, "g": [3, 17, 21, 25, 54, 77], "ga": 21, "gabriel": 24, "gain": [27, 38, 65, 77], "galaxi": [17, 24], "galleri": [20, 21], "game": [17, 77], "gan": [73, 77], "garyfallidi": [3, 8, 17, 24, 25, 26, 27, 30, 78], "gather": [74, 76], "gaussian": [5, 11, 30, 34, 38], "gave": [32, 44, 49, 57, 61, 63, 69, 74], "gb": 61, "gcc": 80, "gener": [3, 16, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 31, 33, 35, 36, 37, 38, 39, 40, 41, 43, 47, 51, 54, 55, 63, 64, 67, 71, 73, 75, 77, 80], "genu": 16, "geometri": 10, "gesta": [61, 63], "get": [3, 12, 18, 19, 20, 21, 22, 24, 25, 28, 29, 30, 31, 52, 53, 54, 56, 66, 70, 74, 76, 78, 80], "get_doc_exampl": 22, "get_doc_examples_imag": 22, "get_examples_list_from_li_tag": 22, "get_fnam": 79, "get_meta_tags_dict": 21, "get_spher": 79, "getelementsbytagnam": 21, "gh": [20, 21], "gibb": [13, 27], "girard": 24, "git": [6, 27, 32], "github": [16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 38, 54, 58, 72, 80], "github_stats_block": 23, "github_stats_includ": 23, "github_stats_tag": 23, "github_visu": 23, "gitter": [18, 24, 25, 26, 27, 28, 29, 30, 54], "give": [4, 5, 7, 10, 11, 16, 19, 32, 49, 50, 59, 62, 63, 67, 70, 80], "given": [6, 11, 14, 15, 16, 28, 32, 35, 43, 47, 49, 53, 77], "gl": [26, 65], "glad": [48, 76], "glass": 3, "glsl": [24, 30], "go": [11, 12, 19, 31, 32, 34, 38, 40, 41, 45, 50, 63, 68, 77], "goal": [3, 16, 17, 25, 30, 56, 63, 65, 66, 74, 76, 80], "goe": 40, "gone": 58, "good": [6, 9, 12, 13, 26, 32, 43, 50, 54, 56, 63, 64, 67, 70, 71, 73, 74, 75, 76], "googl": [1, 4, 27, 32, 56, 58, 60, 66, 72, 75], "google_analyt": 21, "google_analytics_processor": 21, "google_analytics_tracking_id": 21, "googleanalyticsobject": 21, "gor": 54, "gorro\u00f1o": [26, 27], "got": [16, 27, 31, 32, 40, 43, 48, 53, 55, 59, 63, 64, 67, 69, 71, 75], "gotten": 32, "gpt": 32, "gpu": [30, 36, 40, 45, 54, 61], "grab": [32, 73], "gradient": [37, 40, 67], "gradient_t": [7, 79], "gradual": [21, 56, 80], "graduat": 31, "grant": 19, "graph": [21, 23, 26], "graphic": [3, 26], "grate": [56, 58, 62, 66, 68, 70, 72, 74, 78, 79], "great": [3, 6, 7, 11, 12, 16, 24, 40, 54, 75], "greater": [24, 75], "greatli": [72, 78], "green": [11, 15, 75], "greet": [4, 60, 62, 68, 70], "ground": [7, 8, 15, 29, 44, 46, 47, 50, 70], "group": [6, 22, 75], "groupnorm": [39, 48], "grow": [23, 72, 79], "grown": 79, "growth": 80, "gsoc": [3, 4, 8, 11, 12, 15, 17, 18, 23, 24, 25, 28, 29, 30, 33, 52, 54, 55, 56, 58, 60, 65, 66, 68, 70, 74, 79], "gsoc2024": 77, "gsod": [72, 80], "gtab": [49, 70], "gtab1": [32, 47], "gtab2": [32, 47], "gtab_2": 70, "gtf": 70, "guaj": 30, "guardian": [17, 24], "guess": 18, "gui": 24, "guid": [3, 74, 80], "guidanc": [56, 58, 60, 62, 68, 70, 72, 74, 78, 79, 80], "guidelin": [24, 25, 26, 28, 29, 30, 54, 55, 60, 80], "gzip": 21, "h": [4, 30], "h2": 22, "h3": 22, "ha": [3, 7, 10, 11, 15, 17, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, 35, 36, 37, 41, 43, 45, 46, 47, 54, 55, 56, 58, 60, 61, 62, 63, 65, 66, 68, 70, 72, 73, 74, 75, 76, 78, 79, 80], "had": [6, 11, 12, 14, 16, 17, 20, 23, 27, 32, 38, 41, 42, 45, 46, 48, 49, 50, 53, 55, 56, 60, 61, 63, 64, 65, 66, 68, 70, 72, 73, 76, 77], "hadn": 32, "hahahah": 48, "haitz": [26, 27, 55, 61, 63], "half": [8, 16, 29], "hand": [5, 32, 34, 40, 63, 69, 73], "handl": [32, 37, 52, 56, 74, 80], "handmad": 57, "hang": [57, 74], "happen": [11, 32, 35, 52, 58, 62, 63, 64, 68, 75, 76], "happi": [3, 24, 25, 28, 29, 30, 31, 54, 63, 77, 78], "hard": [28, 29, 30, 63, 67], "harder": [17, 19], "hasn": [46, 68], "have": [3, 4, 6, 7, 8, 11, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 38, 40, 42, 43, 44, 45, 47, 50, 51, 54, 55, 56, 57, 58, 60, 61, 62, 63, 64, 66, 68, 70, 72, 73, 75, 76, 77, 78, 79], "haven": [71, 78], "hcp": [11, 12, 13, 14, 16], "hdf5": [61, 63], "he": [55, 59, 61, 63], "head": [8, 21, 32], "headach": 57, "health": [55, 80], "healthcar": 31, "healthi": [51, 55], "heard": [31, 32, 74], "heck": 32, "hectic": [68, 76], "hei": 32, "height": 19, "hello": [56, 58, 65, 66, 72, 74, 76, 78, 79], "help": [6, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35, 40, 44, 45, 48, 49, 50, 51, 54, 56, 58, 59, 69, 71, 73, 74, 79, 80], "hemispher": 5, "henc": [46, 49, 50, 54], "henriqu": [17, 30], "here": [3, 6, 7, 10, 11, 17, 18, 24, 25, 26, 28, 29, 30, 32, 35, 37, 38, 40, 51, 54, 56, 57, 62, 64, 67, 79, 80], "herokuapp": [19, 20, 21], "hesit": 26, "heterogen": 7, "hexagon": 20, "hi": [4, 5, 6, 9, 16, 17, 55, 63, 64, 69], "high": [3, 9, 13, 17, 24, 25, 35, 36, 45], "higher": [3, 14, 21, 43, 45, 63, 71], "highli": [54, 72], "highlight": [16, 19, 23, 78], "hinder": 17, "hint": 32, "histor": 80, "histori": [32, 72], "hitch": 43, "hold": [40, 53], "hole": 67, "holidai": 73, "home": [19, 20, 21, 40], "honest": 66, "honestli": 32, "honeycomb": [20, 21, 22], "hook": 31, "hop": 21, "hope": [18, 31, 32, 65, 66, 68, 70, 73, 76, 78], "hopefulli": [46, 51, 68, 70, 77], "horizon": 54, "horizont": [12, 30], "host": [17, 19, 20, 21, 61], "hot": 77, "houd": 17, "hour": [6, 30, 32, 54, 74], "hous": 72, "hover": 21, "how": [4, 5, 6, 7, 8, 11, 15, 16, 26, 27, 32, 34, 35, 38, 46, 49, 56, 59, 60, 62, 69, 71, 73, 74, 75, 77, 79, 80], "howev": [5, 8, 9, 11, 16, 24, 25, 28, 29, 30, 34, 37, 46, 47, 49, 50, 54, 64, 71, 73, 74, 75, 78, 79], "hpc": [36, 40, 48], "hr": 54, "href": 22, "hstack": 32, "html": [17, 19, 21, 22, 23, 26, 72, 80], "html_content": [19, 21], "http": [17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 38, 54], "http404": 21, "huff": [17, 24, 25, 28, 29, 30, 54], "huge": 8, "human": [3, 5, 12, 13, 16, 17, 45], "hyper": 43, "hyperparamet": [40, 69, 71], "i": [3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "ianu\u015f": 30, "icm": [12, 13, 14], "icnr": 45, "icon": 27, "id": [21, 22], "id15": 17, "idea": [3, 7, 17, 18, 24, 25, 28, 29, 32, 37, 43, 61, 64, 69, 73, 77], "ideal": 21, "ident": 64, "identifi": [14, 19, 26, 47, 56, 59, 60, 65, 66, 71, 76], "idt": 11, "ifram": 19, "ignor": 5, "ij": 11, "ill": 66, "illustr": [15, 26, 67], "im": [24, 25, 27, 28, 29, 30, 54], "imag": [3, 4, 5, 6, 7, 8, 13, 14, 16, 17, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 35, 36, 39, 43, 45, 47, 52, 53, 54, 55, 59, 63, 64, 68, 73, 74, 76, 79], "imagin": 73, "img": 22, "immedi": [49, 50, 58, 80], "immens": 74, "immers": 58, "impact": [40, 72, 80], "impart": 40, "impercept": 36, "imperfect": 11, "implaus": [9, 73], "implement": [3, 4, 5, 6, 7, 8, 10, 13, 15, 16, 17, 21, 24, 25, 28, 31, 32, 33, 35, 37, 38, 39, 40, 42, 44, 45, 46, 47, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63, 64, 67, 68, 70, 71, 72, 74, 75, 77, 79], "implic": [69, 71], "implicit": 45, "implicitli": 75, "import": [3, 4, 5, 6, 14, 15, 16, 17, 19, 20, 21, 34, 35, 36, 42, 44, 46, 47, 52, 68, 72, 76, 78, 79, 80], "importantli": 17, "importerror": 4, "imposs": 17, "impress": [17, 35], "improv": [3, 4, 8, 12, 16, 17, 20, 24, 26, 30, 32, 33, 38, 40, 41, 43, 44, 51, 53, 54, 56, 58, 59, 60, 62, 63, 70, 72, 73, 79], "incf": [25, 28, 29], "includ": [8, 18, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 49, 54, 56, 58, 60, 66, 69, 72, 73, 74, 77, 79, 80], "incoher": 27, "incompat": 78, "incomplet": 8, "incorpor": [8, 47, 54, 80], "incorrectli": 50, "increas": [17, 26, 27, 32, 39, 46, 51, 54, 69, 71, 72, 80], "incred": 79, "incredibli": [56, 58, 74, 76], "inde": [14, 63, 75], "independ": 35, "index": [21, 22, 26, 32, 36], "indexerror": 32, "indic": [43, 75], "individu": [47, 51, 67, 72], "industri": 55, "infer": [3, 17, 30, 36, 51], "inform": [3, 4, 5, 6, 7, 14, 19, 21, 25, 26, 28, 32, 33, 37, 40, 43, 48, 49, 53, 72, 73, 80], "inherit": [7, 8, 57], "initi": [8, 10, 16, 24, 32, 37, 44, 45, 53, 54, 58, 59, 60, 61, 62, 66, 67, 70, 79, 80], "injuri": 55, "inner": [45, 51], "input": [4, 10, 11, 27, 28, 32, 35, 36, 39, 44, 59, 63, 64, 67, 71, 73, 77, 80], "input_shap": 48, "insert": 17, "insertbefor": 21, "insid": [3, 16, 40, 43, 49, 50], "insight": [35, 56, 58, 63, 65, 72], "inspir": [19, 24, 36, 80], "instabl": 36, "instal": [24, 40, 55, 56, 80], "installed_app": 23, "instanc": [7, 8, 26, 67], "instanti": [57, 67, 77], "instead": [19, 22, 26, 43, 50, 64, 67, 69, 80], "institut": 55, "instrument": [60, 62, 68, 70, 72], "insuffici": 11, "insur": [5, 8], "intact": 40, "integr": [8, 17, 23, 24, 30, 52, 54, 56, 60, 65, 66, 67, 68, 78, 79], "intend": [5, 16, 32, 34, 37, 41, 42, 44, 45, 47, 50, 52], "intens": [7, 13, 51, 63, 74, 80], "inter": 25, "interact": [17, 24, 40, 56, 80], "interest": [3, 5, 6, 15, 16, 17, 18, 26, 28, 54, 55, 63, 64, 73, 77], "interfac": [24, 25, 26, 28], "intermedi": [3, 17, 24, 25, 28, 29, 30, 51, 54], "intern": [6, 8, 20, 24, 25, 26, 28, 29, 30, 54, 61, 72], "interpol": [45, 63, 67], "interpret": 47, "intersect": 15, "interview": [17, 31, 32], "intimid": 32, "intra": 7, "intravoxel": 27, "introduc": [21, 32, 66, 75, 80], "introduct": [5, 17, 80], "introductori": 32, "introspect": 24, "introspectivepars": 24, "intuit": [67, 72, 73, 75, 80], "invalu": [56, 58, 74, 76, 78, 79], "invent": 3, "invers": 11, "invest": 60, "investig": [17, 29, 30, 54, 59, 75], "involv": [7, 11, 12, 13, 18, 25, 31, 41, 49, 54, 56, 58, 65, 72, 74, 79, 80], "io": [20, 21, 22, 80], "ioniz": 55, "ipython": [11, 16], "ismrm": [8, 30], "isn": [37, 44, 46], "isotrop": [44, 46, 47, 50, 52, 53], "issu": [9, 14, 15, 21, 24, 25, 26, 28, 29, 30, 32, 36, 40, 45, 47, 53, 58, 59, 62, 65, 67, 68, 70, 71, 78, 79, 80], "item": 26, "iter": [8, 31, 36, 45], "its": [3, 6, 16, 17, 18, 19, 21, 28, 31, 32, 34, 36, 45, 46, 49, 57, 60, 63, 72, 75, 77, 78, 80], "itself": [14, 50, 59], "iu": [40, 48], "ivim": [17, 27], "ixi": 33, "i\u00f1igo": [58, 79], "j": [21, 23, 30], "jacobian": 17, "javascript": 17, "jean": 17, "jensen": 11, "jespersen": 30, "jneumeth": 30, "job": [24, 31, 40, 43, 45, 48, 49], "joi": 32, "join": [22, 24, 56], "jon": [26, 27, 55, 61, 63], "jong": [28, 29, 30, 40, 54, 61], "jongsung": [29, 30, 54], "jorg": 69, "journal": 19, "journei": 75, "jpg": 21, "json": [20, 21, 22], "julio": [17, 30], "juneja": 30, "jupyt": 40, "just": [7, 9, 16, 18, 19, 21, 23, 32, 53, 57, 59, 60, 63, 68, 71, 72, 75], "k": [10, 30], "k_aniso": [49, 50], "k_bulk": [49, 50], "k_iso": [49, 50], "k_micro": 53, "k_shear": [49, 50], "kaggl": 32, "kati": [17, 24, 25, 28, 29, 30, 54], "kaustav": 80, "kayak": 73, "keep": [4, 14, 16, 21, 31, 46, 49, 59, 72, 76, 77], "kei": [18, 54, 56, 66, 74, 79, 80], "kept": [21, 40, 49], "kera": [35, 36, 39, 40, 48, 57, 59, 61, 63, 77], "kernel": [45, 59], "keyword": [21, 54, 68, 70, 74, 78], "kind": [19, 26, 32, 46, 77], "kindli": [8, 12, 13, 14, 63], "kl": [51, 67, 69, 71], "knew": 31, "know": [5, 6, 15, 16, 18, 19, 22, 27, 31, 32, 72, 73, 75], "knowledg": [3, 16, 17, 24, 25, 28, 29, 30, 31, 32, 54], "known": [7, 56], "koudoro": [24, 26, 27, 30, 54, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "kt": [5, 7, 53], "kullback": 67, "kurtosi": [3, 5, 6, 7, 8, 9, 10, 13, 14, 16, 17, 27, 30, 34, 42, 46, 47, 49, 50, 52, 53], "kwarg": [19, 21, 70], "l": [21, 30, 77], "l1": 15, "l2": [15, 35, 36], "lab": [24, 25, 26, 28, 29, 30, 54, 55, 69, 73], "label": 75, "laboratori": 55, "lack": [26, 72, 73, 80], "lai": [56, 60, 80], "laid": 58, "languag": [24, 27, 56], "laplac": 45, "laptop": 77, "larg": [11, 16, 54, 67, 69, 80], "larger": [5, 7, 12, 13, 15, 54], "largest": [12, 13], "last": [3, 4, 7, 8, 11, 13, 14, 16, 27, 33, 39, 40, 43, 45, 47, 48, 50, 58, 61, 63, 67, 70, 73, 75, 77], "lastli": [62, 72, 77, 80], "late": 18, "latecom": 32, "latent": [33, 35, 36, 40, 45, 61, 63, 64, 67, 69, 71, 73, 75, 77], "later": [31, 33, 36, 40, 43, 45, 49, 57, 64], "latest": [6, 22, 26, 74], "latter": 63, "launch": [55, 61], "layer": [21, 30, 35, 36, 39, 45, 48, 59, 61, 63, 67, 69, 76], "lazi": [54, 65], "lazy_load": [68, 70, 80], "ldm": [45, 51], "le": 17, "lead": [36, 67, 79, 80], "leader": 78, "lean": 80, "leap": 31, "learn": [3, 16, 17, 18, 24, 26, 28, 29, 30, 31, 32, 33, 40, 41, 45, 49, 54, 55, 59, 61, 69, 70, 71, 72, 73, 75, 77, 78, 79, 80], "learner": 45, "learnt": 71, "least": [5, 7, 8, 32, 36, 40, 45, 59, 75], "leav": 76, "led": 40, "left": [5, 8, 14, 59], "legarreta": [26, 27], "leibler": 67, "len": 22, "length": [73, 75, 77], "lesion": 30, "less": [5, 7, 8, 11, 33, 36, 43, 51, 61, 72, 76, 80], "lesser": 45, "let": [3, 27, 32, 48, 67, 72, 74, 76, 77, 78], "letter": 76, "level": [24, 71, 80], "leverag": [25, 56, 60], "li": [22, 56], "li_tag": 22, "lib": 80, "libhdf5": 80, "liblapack": 55, "librari": [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 42, 54, 55, 57, 59, 60, 62, 70, 80], "lie": 58, "life": [50, 52, 76], "lightn": 35, "lightweight": 17, "like": [3, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 24, 32, 48, 56, 66, 67, 70, 73, 74, 75, 76, 77], "likelihood": 36, "limit": [3, 5, 15, 30, 51], "line": [5, 6, 7, 11, 15, 16, 18, 20, 23, 24, 25, 26, 28, 29, 34, 37, 50, 51, 53, 55, 73, 77], "linear": [5, 7, 8, 63], "link": [1, 18, 19, 20, 22, 26, 30, 38, 72, 80], "linkedin": 31, "list": [11, 20, 21, 22, 23, 26, 28, 31, 32, 48, 50, 56, 80], "literatur": [7, 8, 19, 33], "littl": [35, 37, 40, 65, 70], "live": [5, 67], "liver": 17, "ll": [33, 34, 37, 38, 46, 47, 49, 52, 53, 73, 74, 78], "load": [23, 26, 30, 48, 54, 57, 61, 63, 65], "local": [4, 17, 21, 27, 32, 53, 55, 69, 70], "locat": [4, 21, 30, 71, 72, 73, 80], "locmem": 21, "locmemcach": 21, "log": [19, 32, 59, 69], "logarithm": 69, "logic": 6, "login": [19, 32, 40], "logist": 76, "long": [30, 57, 60, 62, 73], "longer": 69, "look": [9, 11, 12, 13, 16, 17, 24, 25, 28, 29, 30, 31, 32, 38, 39, 40, 41, 43, 44, 45, 46, 47, 50, 51, 52, 53, 54, 56, 58, 60, 61, 62, 71, 72, 74, 76, 77, 78, 79], "loop": [11, 30, 54, 55, 59], "loss": [36, 40, 45, 51, 55, 67, 69, 71, 75, 77], "lost": [64, 80], "lot": [8, 16, 18, 21, 26, 27, 30, 32, 40, 41, 42, 61, 63, 69, 70, 71, 74, 76, 77, 78], "love": [19, 26, 32], "low": 13, "lower": [7, 12, 13, 15, 16, 75, 76, 80], "lowest": 77, "lr": [43, 51], "ls_fit_cti": [47, 49, 50], "luciani": 17, "lucki": [55, 73], "luckili": 73, "lundel": 30, "m": [21, 30, 32, 47, 48, 50, 52, 63, 66, 68, 72, 74, 76, 78, 79], "machin": [24, 26, 27, 28, 29, 30, 31, 45, 54, 69], "made": [18, 19, 21, 26, 27, 32, 43, 44, 46, 48, 49, 51, 53, 56, 58, 60, 62, 63, 65, 72, 78, 79, 80], "mae": [63, 77], "magn": 30, "magnet": [6, 8, 21, 24, 25, 27], "magnitud": 15, "maharshi": 54, "mai": [18, 19, 32, 33, 36, 38, 43, 45, 51, 54, 61, 69, 73, 75], "mail": [11, 26, 56], "main": [3, 6, 8, 11, 16, 17, 21, 41, 44, 53, 55, 60, 63, 67, 68, 71, 72, 73, 76, 80], "mainli": [21, 55, 71], "maintain": [14, 19, 26, 27, 42, 54, 60, 62, 72, 76, 80], "mainten": 18, "major": [5, 7, 22, 23, 34, 37, 42, 46, 50, 62, 72, 80], "major_sect": 22, "major_section_dict": 22, "major_section_titl": 22, "majorli": [32, 49], "make": [3, 6, 12, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 36, 37, 41, 42, 44, 46, 47, 53, 54, 55, 56, 57, 59, 61, 63, 65, 66, 68, 69, 70, 71, 72, 73, 74, 76, 78, 79, 80], "manag": [18, 19, 26, 32, 38, 40, 41, 54, 61, 64, 72, 74, 76, 77, 80], "mandatori": 80, "mani": [3, 5, 6, 11, 18, 21, 24, 25, 26, 28, 29, 30, 32, 35, 40, 54, 56, 73, 75, 80], "manipul": [64, 73], "manner": [56, 64, 71], "manual": [6, 22, 29, 62, 72], "map": [7, 11, 12, 13, 14, 27, 37, 46, 52, 53], "marc": 17, "marcenko": 27, "march": 17, "mark": [19, 70, 74], "markdown": [18, 19, 21], "marker": 6, "markup": 27, "marral": 8, "maryam": 24, "mask": [8, 11, 35, 51, 70], "master": [5, 6, 8, 18, 31, 55], "match": [5, 7, 19, 36, 42, 44, 46, 47, 50, 59, 63, 73], "mate": 73, "materi": 27, "math": [8, 25, 30, 49, 54], "mathcal": 77, "mathemat": [7, 8, 10, 15, 24, 36, 45], "matplotlib": [60, 80], "matric": [8, 77], "matrix": [6, 10, 37, 42, 46, 49, 77], "matter": [3, 5, 7, 8, 11, 12, 16, 17, 25, 28, 29, 30, 45, 50, 63, 72, 73], "matthew": 3, "maurizio": 8, "mauro": 24, "max_length": 21, "maxim": [29, 30, 36], "maxima": [11, 16], "maximum": [20, 59, 75], "mayb": [33, 37, 70, 73], "mckinnei": 3, "md": [7, 11, 12, 13, 25, 28], "me": [4, 5, 16, 18, 19, 27, 31, 32, 33, 34, 36, 40, 42, 46, 48, 49, 53, 55, 56, 57, 58, 59, 60, 61, 63, 65, 67, 68, 69, 70, 71, 72, 74, 75, 76, 78, 79], "mean": [7, 8, 12, 13, 14, 15, 16, 18, 25, 27, 28, 32, 45, 47, 48, 49, 50, 51, 54, 63, 67, 69, 70, 71, 74, 75, 77], "meaning": [67, 73], "meant": [32, 48], "measur": [3, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 17, 25, 28, 49, 50, 69, 70, 73], "mechan": 75, "mechanist": 30, "med": 30, "media": [7, 17], "medic": [17, 24, 25, 26, 27, 28, 29, 30, 45, 51, 54, 55], "medicin": [6, 8, 25, 30], "medium": 54, "meet": [6, 18, 19, 33, 35, 46, 55, 70, 75], "member": [11, 16, 32, 56], "memcach": 21, "memori": [21, 62, 80], "mention": [4, 6, 7, 10, 11, 12, 13, 14, 15, 69, 70, 73, 75], "mentor": [3, 4, 5, 6, 8, 11, 16, 17, 18, 19, 24, 25, 26, 28, 29, 30, 31, 32, 33, 42, 44, 48, 49, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 70, 72, 73, 74, 76, 78, 79, 80], "mentorship": [3, 17, 24, 25, 28, 29, 30, 54], "menu": [17, 21, 24], "merg": [5, 6, 8, 11, 18, 22, 27, 32, 53, 59, 70, 78, 80], "mess": [32, 67], "meta": 21, "meta_site_domain": 21, "meta_site_protocol": 21, "metadata": 72, "method": [3, 8, 10, 11, 12, 15, 17, 19, 21, 24, 25, 26, 27, 28, 29, 30, 38, 41, 44, 45, 47, 50, 52, 54, 55, 57, 59, 70, 73, 75], "meticul": 60, "metric": [3, 16, 24, 29, 30, 40, 54, 73, 80], "meval": [6, 46, 70], "mi": [29, 30, 54], "micro": 43, "microscop": [30, 47], "microstructur": [5, 24, 37, 45, 49, 50, 51], "mid": [7, 10, 11, 16], "middl": [8, 14, 32, 39, 59, 77], "middlewar": 21, "midterm": [6, 20, 21], "might": [14, 30, 44, 46, 52, 54, 59, 64, 73], "mighti": 77, "mileston": [7, 8, 56, 62, 74, 78], "mimic": 59, "min": [11, 12, 16], "mind": [35, 46, 49, 72], "mine": 73, "minim": [45, 67, 77, 80], "minimum": [69, 75], "minmax": [43, 51], "minor": [4, 22], "minor_sect": 22, "minor_section_dict": 22, "minor_section_titl": 22, "minut": [21, 32, 61], "mirroredstrategi": 40, "mismatch": 32, "miss": [48, 55, 64], "mistak": 19, "mix": [34, 61], "mk": [8, 11, 12, 13, 14, 15], "ml": [31, 32], "mnist": [35, 36, 40, 43, 45], "mobil": 21, "modal": [25, 30, 35, 36, 54], "mode": 35, "model": [3, 5, 7, 8, 11, 13, 16, 17, 19, 20, 21, 24, 25, 30, 32, 33, 35, 37, 39, 40, 41, 42, 47, 48, 49, 50, 51, 52, 54, 55, 57, 59, 61, 63, 64, 67, 69, 70, 73, 75, 77], "moder": 17, "modern": [30, 80], "modestbrand": 19, "modif": 51, "modifi": [19, 21, 40, 41, 42, 46, 49, 54, 56, 63, 69, 80], "modul": [3, 4, 5, 6, 8, 10, 11, 12, 13, 14, 15, 17, 25, 34, 41, 46, 48, 56, 58, 60, 66, 68, 70, 71, 80], "modular": [30, 57, 67, 80], "moment": [4, 32, 50, 60], "momentum": 72, "monai": 51, "mondragon": 55, "monitor": [21, 61, 80], "montreal": 30, "more": [3, 4, 5, 6, 7, 8, 11, 16, 17, 18, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 37, 38, 40, 43, 44, 45, 46, 47, 48, 50, 53, 54, 56, 57, 58, 59, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 78, 79, 80], "moreov": [5, 7, 8, 15, 16, 45, 72], "morpholog": 75, "morphologi": [73, 75], "most": [5, 6, 7, 8, 14, 15, 17, 18, 19, 20, 21, 26, 27, 40, 47, 63, 66, 70], "mostli": [32, 41, 76], "motion": 27, "motto": 24, "move": [6, 36, 45, 46, 47, 49, 68, 70, 72, 75], "mpi": [30, 54], "mr": [17, 27, 30], "mri": [3, 4, 5, 13, 17, 21, 24, 27, 29, 31, 32, 35, 37, 40, 45, 51, 55], "mrm": 30, "msc": [24, 55], "mse": [71, 73, 77], "much": [3, 32, 64, 66, 69, 74, 76, 79], "multi": [7, 9, 17, 24, 30, 40, 47, 52, 53], "multi_tensor": 70, "multi_tensor_dki": 7, "multi_tensor_fit": 50, "multi_voxel": 70, "multi_voxel_fit": [50, 70], "multimod": [29, 30, 36, 54], "multipl": [3, 6, 16, 17, 27, 29, 30, 37, 38, 45, 47, 48, 50, 52, 54, 62, 74, 80], "multiplaform": 17, "multipli": [10, 46, 50], "multiprocess": [30, 54], "multitensor": 32, "multithread": [24, 30, 54], "multivari": 25, "munich": 64, "must": [3, 20, 21, 30, 47, 63, 67], "muster": 31, "mutual": 3, "my": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 23, 27, 31, 32, 33, 34, 35, 36, 38, 40, 41, 42, 43, 44, 47, 48, 49, 50, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77, 80], "myelin": 5, "myself": [27, 31, 33], "n": [4, 10, 14, 30, 32, 63], "name": [4, 5, 10, 19, 20, 21, 51, 53, 56, 63, 80], "name_of_contributor": 72, "nan": [67, 69], "narrow": 31, "natur": [36, 55, 63, 75], "nav": 20, "nav_pages_processor": [20, 21], "navbar": 21, "navig": [17, 72, 74, 80], "nearest": 45, "neat": 23, "necess": 31, "necessari": [27, 45, 47, 56, 58, 60, 62, 65, 70, 74, 75, 79], "necessarili": 73, "necessit": 72, "need": [3, 17, 19, 21, 23, 24, 25, 26, 28, 29, 30, 32, 34, 41, 42, 44, 46, 47, 49, 50, 52, 54, 56, 58, 59, 61, 62, 67, 69, 71, 72, 75, 77, 80], "needl": 36, "neg": [9, 45, 46], "neighbor": 45, "nervou": [31, 32], "net": [25, 36, 39], "neto": 30, "network": [3, 20, 21, 36, 45, 55, 57, 63, 67, 73, 75, 77, 80], "neural": [25, 30, 67, 80], "neuroanatomi": [21, 24, 25, 26, 28, 29, 30, 54], "neurodegen": 55, "neuroimag": [11, 26, 30, 54, 55, 79, 80], "neuroinformat": [25, 28, 29], "neuron": 5, "neurorehabilit": 55, "neurosci": [17, 30], "neuroscientist": 17, "neurostar": 29, "neurosurgeon": 17, "never": [11, 18, 31], "nevertheless": [7, 11, 30, 61, 73, 74], "new": [3, 4, 6, 8, 11, 12, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 32, 36, 42, 44, 48, 49, 54, 55, 56, 63, 67, 70, 71, 72, 73, 74, 76, 78, 80], "new_fit": 70, "newspost": 21, "newton": 12, "next": [5, 10, 11, 17, 31, 33, 58], "nfb": [39, 51], "ni": 10, "nibabel": [57, 80], "nice": [6, 7, 11, 24, 64, 67, 77], "nifti": 25, "nipi": [4, 24, 25, 28, 29], "nl": 50, "nlmean": 27, "nn": [45, 63, 80], "noddi": 24, "node": [40, 61], "nois": [7, 13, 14, 17, 36, 39, 51], "noise_estim": 14, "noisi": [36, 43], "noisier": 7, "non": [5, 7, 11, 15, 26, 27, 45, 46, 47, 75], "none": [43, 48, 63, 70], "nonequilibrium": 36, "nonetheless": 43, "nonlinear": [3, 17], "nonrigid": [24, 29, 30, 54], "nor": [43, 71], "normal": [3, 10, 13, 24, 25, 26, 27, 28, 29, 30, 43, 45, 51, 54, 67, 69, 73], "nose": [4, 5, 7, 16], "nosetest": [4, 5, 16], "notat": [46, 50], "note": [10, 11, 26, 35, 41, 47, 63, 73, 78], "notebook": [16, 40], "noth": [48, 64], "notic": [6, 11, 14, 15, 30, 32, 41, 46, 54, 72], "notion": 36, "novel": 12, "now": [3, 4, 5, 8, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27, 31, 32, 42, 44, 46, 47, 48, 50, 53, 55, 58, 61, 63, 67, 68, 69, 70, 75, 77, 78], "nowadai": 5, "np": [6, 15, 40, 44, 50, 63, 70], "num_res_channel": 51, "number": [7, 10, 11, 12, 13, 20, 23, 24, 26, 32, 40, 43, 61, 75], "numer": [8, 10, 11, 15, 16, 72], "numpi": [6, 15, 17, 24, 25, 26, 28, 29, 30, 54, 57, 60, 80], "nvidia": [36, 40], "nyu": 31, "o": 21, "object": [6, 16, 17, 20, 21, 22, 26, 40, 45, 48, 54, 55, 58, 62, 63, 67, 70, 72], "object_typ": 21, "objectdoesnotexist": [20, 21], "observ": [11, 37, 44, 45, 50], "obtain": [5, 7, 8, 9, 11, 12, 13, 14, 16, 35, 43, 45, 47, 50, 51], "obvious": 55, "occur": [26, 50, 70], "ocegueda": 17, "od": 30, "odf": [3, 12, 16, 25, 28], "odfg": 11, "off": [26, 32, 39], "offer": [3, 5, 26, 80], "offici": [32, 36, 39, 74], "offlin": 3, "often": [17, 19, 25, 67], "og": 21, "ol": [5, 7], "old": [72, 80], "older": [21, 48], "omar": 17, "onc": [32, 48, 54, 59, 67, 71, 77, 80], "one": [3, 5, 6, 7, 8, 10, 12, 13, 17, 18, 21, 22, 24, 28, 30, 31, 32, 36, 37, 44, 45, 46, 49, 51, 55, 57, 59, 61, 62, 63, 67, 68, 70, 71, 73, 75, 76, 77], "ones": [6, 14, 21, 32, 41, 42, 43, 63, 64, 66, 73, 75], "ong": 30, "ongo": [46, 72, 79, 80], "onli": [3, 4, 7, 11, 14, 17, 19, 22, 24, 29, 30, 31, 35, 37, 42, 43, 47, 48, 50, 51, 52, 53, 54, 64, 68, 69, 75, 79], "onlin": [17, 26, 48, 80], "onto": [53, 70], "open": [3, 5, 6, 16, 17, 18, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 45, 54, 55, 72, 77, 79], "opengl": [17, 24, 29], "openmp": [24, 30, 54], "oper": [11, 24, 33, 63, 67, 69, 80], "opportun": [54, 55, 56, 58, 65, 66, 70, 78, 79], "opposit": [11, 73], "optim": [3, 11, 12, 16, 20, 24, 40, 43, 62, 80], "optimist": 31, "option": [8, 11, 20, 21, 25, 28, 29, 30, 32, 39, 54, 80], "orbit": 24, "order": [3, 15, 21, 32, 34, 41, 42, 44, 47, 50, 63, 80], "ordinari": [5, 7, 8], "org": [17, 19, 26, 27, 74], "organ": [8, 11, 16, 18, 31, 32, 45, 55, 56, 59, 64, 71, 73, 77], "organiz": [72, 80], "orient": [3, 7, 11, 16, 25, 27, 28, 40], "origin": [6, 14, 35, 44, 46, 47, 51, 61, 67, 68, 72, 75, 77], "orthogon": 10, "other": [3, 5, 7, 10, 15, 16, 17, 18, 19, 21, 22, 23, 24, 26, 32, 34, 46, 48, 49, 54, 55, 56, 57, 58, 59, 60, 63, 69, 72, 73, 74], "otherwis": 61, "our": [1, 3, 17, 24, 25, 28, 29, 30, 38, 45, 47, 49, 50, 51, 54, 55, 56, 64, 65, 72, 73, 74, 75, 76, 77, 78, 79, 80], "ourselv": 47, "out": [9, 22, 26, 31, 32, 33, 34, 35, 40, 42, 44, 45, 46, 47, 50, 51, 52, 55, 58, 60, 68, 69, 70, 73, 75, 79], "outcom": [38, 56, 78], "outdoor": 73, "outer": [45, 51], "outlin": [43, 80], "outlook": 43, "output": [32, 35, 36, 38, 39, 40, 42, 43, 45, 49, 51, 54, 59, 63, 69, 80], "outsid": [31, 47, 49, 77], "over": [16, 32, 45, 56, 63, 72, 74, 80], "overal": [8, 26, 53, 62, 72, 79, 80], "overcam": 15, "overcom": [5, 11, 33, 45], "overestim": 14, "overfit": [55, 64], "overflow": 50, "overhead": 21, "overlai": 21, "overlap": 45, "overridden": 19, "overview": [27, 56, 80], "ow": 45, "own": [17, 18, 19, 24, 27, 49, 65, 78], "p": [19, 22, 48], "pac": 25, "pace": 76, "pack": 76, "packag": [5, 54, 59, 68, 70, 78, 79, 80], "page": [3, 11, 17, 19, 20, 21, 23, 24, 25, 26, 28, 29, 30, 54], "page_titl": 21, "page_url": [20, 21], "pages_in_nav": [20, 21], "pageview": 21, "paid": 72, "pain": 67, "pair": [10, 51, 53], "palermo": 8, "palombo": 30, "panel": [7, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22], "paper": [3, 17, 32, 33, 35, 36, 44, 45, 46, 47, 50, 51, 61, 63, 64, 71, 73, 75, 77], "paradigm": [40, 45, 55], "paragon": 27, "parallel": [5, 10, 24, 30, 47, 54, 61, 62], "param": [50, 68], "paramet": [3, 8, 12, 13, 14, 16, 17, 21, 37, 40, 41, 42, 43, 44, 45, 46, 47, 50, 51, 56, 57, 59, 63, 64, 68, 69, 70, 71, 73, 75, 80], "parent": 32, "parentnod": 21, "pari": [12, 13, 14], "park": [28, 29, 30, 54], "pars": [19, 21, 22, 62], "parser": [19, 22, 24], "part": [5, 6, 7, 8, 11, 16, 18, 20, 26, 32, 42, 50, 55, 58, 63, 67, 71, 72, 79, 80], "parti": 67, "partial": [21, 63], "particip": [3, 16, 17, 24, 25, 28, 29, 30, 31, 54, 55, 58, 72], "particl": [24, 27], "particular": [4, 5, 6, 7, 8, 13, 14, 19, 60, 71], "particularli": [5, 11, 14, 15, 16, 42, 72, 74, 78, 80], "partli": 18, "pass": [20, 21, 36, 40, 42, 44, 49, 52, 53, 65, 68, 70, 80], "passion": [31, 79], "past": [19, 61, 66, 74, 75], "pastur": 27, "patch": [18, 64], "path": [4, 21, 22, 53], "patient": 55, "pattern": [18, 58, 59, 72], "pave": 80, "pca": [17, 27], "peak": [3, 27, 70], "pediatr": 30, "pend": 80, "peopl": [17, 19, 32], "pep": [62, 68], "pep8": [4, 44, 46, 53, 56], "per": 40, "perceiv": 71, "perceptu": 36, "perfect": [43, 55], "perfectli": [44, 50], "perform": [3, 7, 8, 10, 12, 14, 16, 17, 21, 24, 25, 27, 30, 33, 35, 39, 40, 43, 45, 51, 54, 58, 60, 62, 63, 73, 80], "perfus": [17, 25, 26, 27, 28, 29, 30, 54], "period": [5, 6, 8, 12, 15, 16, 19, 20, 22, 23, 32, 33, 58, 72, 77, 79, 80], "permiss": [19, 21], "permit": [29, 30, 34, 37, 40, 54], "perpendicular": [5, 11, 32, 47], "perpendicular_direct": 10, "persist": 75, "person": [6, 16, 39, 55, 72, 73, 74, 76, 78, 80], "personnel": 48, "perspect": [49, 50], "peterson": 17, "pft": 27, "phase": [16, 55, 56, 58, 60, 62, 68, 70, 72, 74, 79, 80], "phd": [4, 24, 55, 61, 77], "phenomenolog": 30, "phenomenon": 45, "philosophi": 27, "phone": 32, "photo": [6, 8, 77], "physic": [17, 24, 25, 28, 29, 30, 54, 61], "pi": 10, "pick": [32, 48, 75, 76], "pictur": 77, "piec": 19, "pip": 80, "pipelin": [3, 17, 35, 51, 54, 58, 62, 65, 80], "pitfal": [7, 11, 30, 54], "pixel": [36, 43, 45, 47, 51], "pixelcnn": [35, 36], "place": [19, 20, 48, 64, 67, 68, 76, 77], "plai": [17, 24, 43, 45, 74, 77], "plain": 26, "plaintext": 27, "plan": [8, 11, 12, 16, 18, 23, 47, 57, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 80], "planar": 30, "plane": [7, 10], "platform": [24, 72, 80], "plausibl": 73, "pleas": [3, 4, 17, 24, 25, 26, 28, 29, 30, 54, 78], "plot": [15, 16, 40, 51, 52, 73, 75], "plu": [17, 19, 20, 21, 30, 32], "poc": 66, "point": [6, 8, 11, 16, 23, 26, 35, 49, 50, 63, 64, 67, 74], "polar": 7, "polish": [32, 59], "polydata": 24, "poor": 11, "pop": 40, "popul": [5, 7, 19], "popular": [3, 17, 29, 30], "port": 17, "portion": [16, 65], "posit": [19, 55, 56, 68, 80], "possibl": [11, 17, 20, 26, 32, 52, 59, 68, 75, 77, 78], "possibli": [34, 54], "post": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 23, 26, 27, 31, 36, 43, 73, 75, 77], "post_dat": 21, "posterior": [33, 35, 36, 51], "postpon": [8, 63], "potenti": [24, 25, 26, 28, 29, 30, 33, 54, 55, 62, 72, 78, 79, 80], "power": [11, 56, 74, 77, 80], "pr": [27, 32, 53, 56, 58, 60, 62, 69, 74, 77, 79, 80], "practic": [13, 18, 54, 74, 76, 80], "pre": [13, 16, 36, 40, 61, 63], "precis": [7, 24, 50], "predetermin": 36, "predict": [16, 39, 73, 75], "predomin": 45, "prefer": [17, 28, 30, 38, 79], "preliminari": [5, 69], "prepar": [5, 18, 31, 72, 74, 80], "preprocess": [17, 33, 43, 51, 54], "preprocessor": 21, "presenc": [26, 55, 80], "present": [11, 13, 14, 15, 16, 26, 35, 44, 49, 53, 79, 80], "preserv": 72, "pretti": [51, 60], "prevent": [65, 69], "previou": [6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 26, 32, 33, 36, 40, 43, 45, 51, 60, 61, 62, 64, 66, 77], "previous": [5, 7, 11, 13, 21, 31, 41, 42, 47, 49, 50, 53, 72, 80], "primari": [54, 65, 80], "primarili": 24, "primit": 26, "princip": 11, "print": [19, 21, 48], "prior": [35, 36, 67, 75, 77], "priori": 38, "priorit": 71, "prioriti": [22, 51, 63, 71, 78, 79], "probabilist": [24, 27, 29, 30, 36, 54], "probabl": [11, 16, 18, 44, 77], "problem": [4, 7, 15, 16, 21, 32, 44, 46, 49, 50, 52, 55, 59, 61, 62, 63, 65, 68, 69, 70, 73, 75, 77], "procedur": [5, 8, 10, 11, 12, 14, 15, 16, 30], "proceed": 30, "process": [7, 8, 9, 11, 12, 13, 14, 16, 17, 18, 20, 21, 24, 25, 26, 27, 29, 30, 31, 36, 40, 59, 60, 61, 62, 65, 66, 71, 72, 73, 74, 76, 77, 78, 79, 80], "processed_str": 19, "prod": 40, "produc": [5, 7, 15, 26, 32, 33, 36, 38, 43], "product": [6, 8, 10, 21, 58, 59, 60, 61, 66, 72, 74, 76, 78], "professor": 55, "profil": [11, 16], "program": [3, 8, 16, 17, 24, 25, 26, 28, 29, 30, 32, 54, 55, 56, 72, 76, 78], "progress": [43, 61, 63, 64], "project": [3, 4, 5, 7, 11, 12, 13, 21, 23, 31, 32, 48, 52, 55, 58, 62, 63, 64, 66, 68, 70, 72, 73, 74, 75, 76, 77], "promis": 71, "promot": 6, "prompt": [31, 40], "proof": 62, "propag": 27, "proper": [20, 21, 60, 72, 79], "properli": [5, 21, 35, 47, 49, 50, 61, 63, 72], "properti": [3, 19, 21, 30, 63, 73], "proport": 16, "propos": [4, 5, 6, 7, 11, 12, 15, 16, 17, 19, 24, 25, 26, 28, 29, 30, 32, 45, 54, 72, 77], "prospect": 78, "prove": [45, 69], "proven": 45, "provid": [8, 16, 21, 24, 25, 26, 27, 29, 30, 39, 42, 49, 50, 53, 54, 55, 56, 58, 62, 63, 64, 67, 68, 70, 72, 73, 74, 75, 78, 80], "pseudo": 63, "psf": [24, 32], "public": [3, 17, 20, 21, 26, 51, 69], "publicli": [3, 17], "publish": [27, 54, 77], "pull": [6, 8, 11, 13, 16, 18, 19, 20, 21, 22, 23, 26, 38, 54, 56, 62, 65, 80], "pure": [32, 51], "purpl": 51, "purpos": [19, 27, 30, 32, 61, 74], "pursu": 31, "push": [6, 19, 21, 31, 53, 68, 79, 80], "put": [20, 21, 31, 32, 39, 42, 49, 58, 60, 62, 67, 70, 73, 78], "py": [4, 5, 20, 21, 23, 34, 37, 38, 46, 47, 49, 50, 70, 80], "pyafq": 74, "pyi": [70, 80], "pyinstal": 24, "python": [3, 4, 5, 17, 18, 19, 21, 24, 25, 26, 27, 28, 31, 32, 54, 55, 56, 80], "pytorch": [30, 33, 45, 54, 55, 59, 61, 63], "q": [21, 30, 34], "q1": 34, "q2": 34, "qa": [3, 17, 24], "qamar": [28, 29], "qt": [17, 24, 25, 28], "qti": [32, 41, 42, 44, 46, 47, 49, 50, 52, 53], "qualit": [36, 43, 45, 51], "qualiti": [3, 8, 12, 13, 16, 17, 24, 35, 36, 62, 71, 72, 73, 76], "quantif": 5, "quantifi": 5, "quantit": [45, 51], "quantiz": 45, "quasi": 12, "question": [24, 25, 27, 28, 29, 30, 35, 36, 54], "quick": [72, 80], "quickbundl": 24, "quickbundlesx": 24, "quickli": [6, 33, 40, 51, 75], "quit": [46, 70, 72, 74], "r": [6, 19, 21, 30, 45, 75], "racket": 24, "radial": [7, 8, 12, 13, 14, 16, 47, 49, 50], "radiat": 55, "rafael": [4, 17, 30], "rais": [21, 48, 62, 65, 70, 80], "ran": [40, 43, 45, 48, 50, 78], "random": [36, 40, 45, 67], "rang": [15, 21, 51, 63, 69, 75], "ranveer": 24, "rate": [40, 45, 61], "rather": [35, 44, 45, 46, 72, 75], "ravel": 15, "raw": 8, "rd": [7, 8, 12, 13], "re": [3, 19, 27, 39, 42, 47, 50, 52, 53, 72, 74, 79, 80], "reach": [11, 15, 35, 58, 79], "read": [3, 6, 17, 24, 25, 27, 28, 29, 30, 31, 32, 33, 40, 44, 46, 48, 54, 56, 58, 60, 61, 62, 64, 65, 68, 70, 72, 73, 74, 75, 76, 78], "readabl": [44, 46, 54, 56, 60, 80], "reader": 72, "readi": [18, 40, 54, 58, 78], "readili": 3, "reagan": [24, 30], "real": [5, 8, 12, 13, 14, 16, 19, 21, 47, 49, 50, 52, 77], "realist": [3, 17, 38], "realiz": [6, 30, 42, 44, 46, 47, 49, 50, 54, 70], "realli": [21, 24, 32, 43, 52, 55, 58, 61, 63, 70, 75, 77, 79], "rearrang": 42, "reason": [24, 31, 32, 39, 44, 51, 52, 63, 70, 71, 74, 75, 77, 80], "rebas": 32, "receiv": [3, 8, 11, 17, 24, 25, 28, 29, 30, 54, 56, 58, 63, 68, 70, 79], "recent": [6, 7, 8, 17, 19, 26, 30, 48], "recogn": [4, 68], "recommend": [3, 76, 80], "reconst": [70, 80], "reconstruct": [5, 8, 9, 11, 12, 13, 14, 17, 21, 25, 27, 28, 30, 35, 36, 39, 43, 45, 51, 59, 62, 63, 67, 71, 73, 77], "record": 3, "recov": 66, "rectangl": 77, "recurs": 22, "red": [11, 15, 16, 36, 40, 51], "redirect": 72, "reduc": [8, 11, 21, 24, 36, 40, 55, 56, 62, 63, 67, 80], "reduce_mean": 40, "reduct": [40, 80], "redund": 4, "ref": [20, 21], "refactor": [54, 57, 80], "refer": [3, 10, 17, 24, 25, 26, 28, 29, 30, 37, 45, 47, 52, 53, 54, 67, 73, 74, 80], "refin": [18, 62, 74, 80], "reflect": [21, 27, 54, 56, 66, 74, 76, 80], "refresh": 73, "regain": 66, "regard": 31, "regardless": [47, 75], "regim": 15, "region": [13, 15, 16, 28, 73], "regist": [19, 26, 54], "registr": [3, 21, 24, 27, 28, 33], "registri": [79, 80], "regress": [3, 17, 35, 64, 67], "regular": [19, 64, 67, 75, 77], "regularli": [30, 54], "reinforc": 79, "rekindl": 17, "rel": [5, 6, 11, 15, 19, 22, 30], "rel_url": 22, "relat": [5, 12, 14, 21, 24, 25, 26, 27, 28, 29, 30, 32, 52, 53, 54, 68, 72, 74, 76, 77, 78, 79, 80], "relationship": [32, 37, 38], "releas": [18, 27, 80], "relev": [7, 8, 11, 15, 16, 26, 31, 34, 37, 56, 57, 76, 80], "reli": 45, "reliabl": [56, 60, 62, 73], "remain": [52, 53, 54, 62, 68, 70, 72, 78], "remind": 11, "remot": 40, "remov": [4, 11, 14, 21, 27, 29, 36, 47, 50, 53, 62], "render": [21, 23, 26, 72], "reorgan": 80, "reparametr": 36, "reparametrizationtricksampl": [67, 69], "repetit": 80, "replac": [11, 14, 19, 21, 22, 35, 48], "replic": 63, "repo": [19, 20, 21, 55, 59], "repo_info": [21, 22], "report": [9, 15, 24, 27, 51, 52, 53, 59, 78, 79], "repositori": [6, 8, 11, 17, 18, 19, 20, 21, 23, 26, 27, 45, 61, 63, 70, 72], "repository_nam": 23, "repres": [5, 7, 22, 38, 46, 47, 62, 75, 80], "represent": [3, 43, 47, 67, 71, 73, 77], "reprocess": [11, 12], "reproduc": [12, 55, 59, 80], "reproducibli": [3, 17], "request": [6, 8, 11, 13, 16, 18, 19, 20, 21, 22, 23, 26, 29, 30, 40, 48, 54, 55, 56, 62, 65, 80], "requir": [3, 7, 8, 10, 11, 13, 14, 16, 17, 19, 21, 24, 25, 27, 28, 29, 30, 33, 35, 36, 37, 38, 40, 42, 44, 46, 47, 49, 53, 54, 58, 69, 72, 74], "reschedul": 16, "research": [3, 5, 6, 16, 24, 25, 26, 28, 29, 30, 31, 32, 35, 36, 40, 44, 48, 52, 54, 55, 56, 58, 63, 66, 75, 77, 80], "resembl": [38, 40, 49, 51], "reserv": 73, "reset": 30, "reshap": [26, 63], "reshuffl": 45, "residu": [43, 45], "residualblock": 39, "resili": 64, "resist": 80, "resiz": [45, 51, 63], "reslic": 43, "resolut": [24, 80], "resolv": [4, 5, 6, 10, 15, 16, 46, 48, 60, 65, 70, 78, 79], "reson": [6, 8, 21, 24, 25, 27], "resort": 40, "resourc": [17, 45, 48, 54, 75, 80], "respect": [39, 43, 45, 51, 61, 63], "respons": [17, 19, 20, 21, 22, 68, 80], "response_json": [20, 21, 22], "rest": [32, 39, 40, 46], "restrict": [5, 17, 34, 36], "restructur": 80, "restructuredtext": [26, 27, 72], "result": [6, 12, 16, 22, 27, 32, 35, 39, 40, 45, 51, 52, 54, 61, 66, 69, 71, 73, 77, 80], "resum": [34, 37, 76], "retriev": [21, 53, 80], "return": [19, 20, 21, 22, 44, 66, 67, 70], "return_mask": 14, "reveal": [30, 48], "revers": 36, "review": [8, 15, 26, 32, 53, 56, 60, 66, 69, 70, 72, 76, 78, 79, 80], "revis": [8, 11, 16, 80], "revisit": 15, "rewrit": 26, "rf": 80, "rhythm": 76, "rich": 35, "right": [5, 8, 17, 31, 32, 35, 56, 59, 67, 75, 79], "rigor": 78, "ring": 27, "risk": 80, "rk": [8, 11, 12, 13, 14], "rm": 80, "roadmap": 26, "robin": [65, 79], "robust": [5, 7, 8, 17, 25, 46, 47, 54, 60, 62, 78, 79, 80], "roi": [28, 65, 79], "rokem": [3, 6, 17, 24, 26, 27], "role": 74, "romain": [12, 13, 14], "room": [27, 32, 56, 63], "roomi": 32, "root2": [44, 46, 47], "rotat": [8, 10], "row": [45, 51], "rp": 48, "rst": [37, 72], "ruff": 62, "rule": 51, "run": [4, 5, 11, 24, 39, 46, 47, 48, 49, 50, 53, 55, 57, 59, 61, 63, 71, 74, 75, 80], "runspe": 4, "rush": 32, "s0": 70, "s_conta": 70, "safe": 47, "sagar": 32, "sagitt": [12, 30], "sai": [32, 47, 63, 67, 75, 77, 80], "said": 75, "sake": 40, "same": [8, 11, 20, 24, 25, 26, 28, 29, 30, 31, 32, 35, 40, 41, 45, 48, 50, 51, 54, 59, 63, 69, 75], "sampl": [7, 11, 12, 16, 35, 36, 40, 45, 51, 61, 63, 64, 67, 69, 73, 75, 77], "satisfi": [72, 74], "save": [7, 8, 19, 20, 21, 38, 40], "saw": 55, "sbatch": 48, "scalabl": [18, 36], "scalar": [63, 64], "scale": [18, 21, 51, 80], "scan": 5, "scanner": 7, "scarciti": 48, "scenario": [34, 60, 80], "scene": 24, "schedul": [7, 36, 76], "school": 31, "scienc": [24, 25, 26, 28, 29, 30, 32, 54, 55, 75], "scientif": [3, 16, 17, 24, 25, 26, 28, 29, 30, 54, 73], "scientist": [24, 25, 26, 28, 29, 30, 54], "scifi": [17, 24], "scikit": [24, 68, 80], "scipi": [12, 17, 43, 51, 60, 80], "scopatz": [17, 24, 25, 28, 29, 30, 54], "scope": 56, "score": [21, 36, 73], "scrape": 22, "scratch": [18, 19, 45], "screenshot": 20, "script": [4, 5, 6, 11, 12, 16, 19, 20, 21, 24, 57, 62, 79, 80], "sd": 39, "seamless": 60, "search": [20, 31, 71, 75], "searchabl": 80, "season": [27, 72, 80], "sec": 12, "second": [6, 7, 8, 10, 15, 16, 17, 32, 34, 43, 45, 51, 60, 69], "secondli": 31, "section": [7, 20, 21, 22, 26, 27, 32, 34, 37], "section_typ": [20, 21], "secur": [18, 19, 21], "see": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 21, 23, 24, 25, 26, 28, 29, 30, 36, 38, 40, 43, 44, 45, 47, 48, 54, 63, 64, 66, 71, 72, 73, 74, 75, 77, 79, 80], "seek": [19, 53, 58, 67], "seem": [7, 9, 11, 12, 13, 14, 15, 16, 31, 43, 50, 51, 59, 69, 73], "seen": [33, 35, 43], "segment": [3, 28, 54, 80], "select": [16, 18, 21, 28, 29, 30, 32, 54, 56, 62, 64, 79, 80], "self": [19, 21, 50, 70, 80], "send": [21, 32], "senior": 31, "sensit": [5, 7], "seo": 21, "separ": [11, 19, 20, 22, 35, 36, 39, 52, 54, 59, 68, 79], "sequenc": 30, "sequenti": [48, 63], "serg": [24, 26, 27, 30, 54, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "seri": [24, 26, 80], "serious": 32, "serv": 26, "server": [18, 20, 25, 40, 72], "session": [55, 70], "set": [3, 7, 14, 17, 18, 19, 20, 21, 22, 23, 25, 27, 28, 32, 36, 40, 48, 56, 61, 63, 67, 69, 72, 74, 78, 80], "setback": 66, "settl": 76, "setup": [21, 45, 80], "seventh": 70, "sever": [5, 18, 19, 22, 28, 30, 32, 37, 38, 42, 54, 56, 72, 75, 79, 80], "sex": 33, "shade": 24, "shader": [24, 30], "shape": [32, 40, 42, 43, 44, 51, 59, 70, 72, 78], "share": [8, 16, 21, 24, 25, 26, 28, 29, 30, 41, 54, 56, 62, 66, 72, 74, 76, 78, 79], "sheath": 5, "shell": [30, 79], "shemesh": 30, "shilpi": 32, "shirt": 8, "short": [11, 73], "shorter": [73, 75], "shortli": [71, 80], "shot": [32, 62], "should": [3, 8, 17, 19, 21, 24, 25, 26, 28, 29, 30, 32, 42, 51, 54, 55, 59, 63, 67, 69, 70, 75, 77, 80], "show": [3, 8, 9, 11, 12, 14, 15, 16, 17, 22, 23, 26, 27, 30, 32, 35, 36, 40, 46, 51, 59, 73], "show_in_nav": [20, 21], "showcas": [18, 62, 79], "shown": [3, 5, 7, 10, 11, 12, 14, 15, 16, 35, 36, 43, 45, 46, 51, 61, 77], "shreya": [25, 28, 29, 30], "shuffl": 45, "side": [8, 71, 73], "sigma": 14, "sign": 46, "signal": [5, 7, 16, 17, 25, 26, 27, 28, 29, 30, 32, 37, 38, 41, 46, 47, 49, 54, 70], "signal_dki": 7, "signatur": [70, 80], "signific": [15, 56, 60, 62, 65, 72, 74, 76, 78, 79, 80], "significantli": [14, 41, 53, 62, 80], "sim": [5, 7, 80], "simd": [30, 54], "similar": [3, 12, 13, 16, 22, 24, 29, 30, 32, 35, 41, 44, 47, 50, 51, 54, 63, 75], "similarli": [36, 45, 46], "simpl": [5, 7, 14, 19, 21, 29, 30, 36, 62, 71], "simpler": [8, 11, 72, 75], "simplest": [5, 32], "simpli": [23, 44], "simplif": 80, "simplifi": [11, 24, 30, 54, 74, 80], "simt": [30, 54], "simul": [4, 5, 6, 8, 11, 15, 32, 34, 50, 52, 53, 70, 80], "simultan": [17, 74], "sinc": [6, 7, 11, 14, 16, 19, 30, 32, 39, 50], "singl": [20, 27, 30, 36, 37, 52, 67, 75], "single_voxel_fit": 70, "singular": [10, 16], "site": [20, 21, 72, 80], "situat": [15, 47, 50], "sixth": 68, "size": [39, 40, 45, 51, 63], "skare": 30, "skill": [3, 17, 24, 25, 28, 29, 30, 32, 54, 55, 74, 79], "skull": [33, 51], "slate": 40, "sleep": 64, "slice": [43, 45, 51], "slicer": 30, "slide": 17, "slight": [44, 51], "slightli": [29, 30, 61], "slow": [40, 65, 75], "slower": 76, "slurm": 40, "small": [6, 11, 14, 15, 18, 24, 25, 28, 29, 30, 47, 54, 55, 58, 59, 69, 72], "small_64d": 7, "smaller": [5, 8, 11, 14, 15, 74], "smart": 73, "smooth": [45, 62], "smoother": 80, "smoothli": 77, "sn": 32, "sne": [73, 75], "snippet": [21, 61], "snr": [11, 70], "so": [3, 4, 5, 6, 8, 11, 16, 17, 23, 26, 29, 31, 32, 35, 36, 37, 38, 40, 42, 43, 44, 46, 47, 48, 50, 53, 55, 59, 61, 62, 63, 64, 67, 71, 73, 74, 75, 77], "social": [17, 18, 19, 20, 21], "societi": [6, 8, 30], "softwar": [3, 5, 6, 17, 18, 21, 24, 25, 26, 28, 29, 30, 32, 54, 55, 79, 80], "solid": [27, 60, 74, 80], "solut": [5, 7, 8, 10, 15, 16, 50, 69, 70, 75, 78, 79], "solv": [6, 7, 15, 16, 21, 32, 55, 59, 63, 65, 67, 69, 75], "some": [4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 36, 37, 40, 41, 42, 44, 45, 46, 48, 50, 52, 53, 54, 59, 60, 61, 62, 63, 64, 68, 70, 73, 74, 75, 76, 78, 79], "somealgorithm": 30, "somehow": 22, "someth": [17, 18, 31, 46, 48, 73], "sometim": 76, "somewher": 44, "soon": [6, 16, 17, 20, 21, 31, 52, 68, 70, 78, 80], "sort": [43, 63], "sound": [3, 53], "soup": 22, "sourc": [3, 5, 6, 16, 17, 18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 45, 46, 47, 49, 50, 52, 53, 54, 55, 56, 65, 72, 79, 80], "space": [3, 17, 33, 35, 36, 51, 61, 63, 64, 67, 69, 71, 73, 75, 77], "span": 75, "spatial": [5, 11, 16, 25, 26, 27, 28, 29, 30, 45, 54], "special": [25, 26, 27, 28, 29, 30, 32, 54, 72], "specif": [5, 12, 13, 14, 15, 16, 17, 19, 30, 32, 45, 56, 63, 65, 68, 70, 71, 72, 73, 74, 75, 76, 77, 80], "specifi": [21, 55, 80], "speed": [12, 17, 21, 61, 66, 74], "spend": 32, "spent": [32, 34, 40, 50, 56, 63, 76], "sphere": 11, "spheric": 27, "sphinx": [17, 18, 26, 27, 37, 54], "spin": [26, 30, 40], "spinal": 55, "splenium": 16, "split": [8, 22, 26], "split_cti_param": 47, "spread": 18, "spyder": 46, "sqrt": 53, "squar": [5, 7, 8, 53, 71, 75], "squash": 32, "squeez": 44, "src": [19, 21, 22], "sreekar": [30, 54], "ssd": [29, 30], "st": 30, "stabil": [36, 80], "stabl": [11, 36, 51], "stablediffus": 39, "stack": 32, "stage": [74, 80], "stai": [1, 30, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 80], "stand": 30, "standard": [4, 5, 7, 8, 9, 10, 11, 12, 15, 16, 18, 26, 28, 41, 42, 44, 46, 53, 60, 69, 72, 80], "start": [4, 6, 11, 17, 18, 19, 20, 24, 27, 31, 32, 33, 37, 40, 46, 48, 49, 50, 55, 59, 63, 67, 70, 71, 74, 77, 79, 80], "startswith": 22, "startup": 80, "stat": [56, 80], "state": [6, 8, 24, 25, 26, 28, 29, 30, 51, 54], "statement": [48, 74, 76], "static": [19, 21, 26], "statist": [3, 7, 16, 21, 22, 25, 26, 27, 28, 29, 30, 45, 54], "statu": [31, 55], "status_cod": [21, 22], "steadi": [74, 75], "steep": 74, "stem": 45, "step": [4, 5, 10, 11, 13, 16, 17, 21, 27, 28, 30, 32, 33, 36, 40, 43, 45, 51, 54, 56, 61, 62, 64, 73, 74, 75], "stick": 24, "still": [3, 5, 11, 12, 14, 15, 20, 22, 44, 47, 51, 54, 57, 59, 62, 63, 70, 72, 76, 77, 80], "stipend": 3, "stop": [6, 73], "store": [19, 25, 59, 71], "str": [22, 70], "straightforward": [60, 71, 75], "strang": 59, "strategi": [7, 11, 14, 17, 33, 40, 61, 66, 71, 73], "streamlin": [3, 24, 27, 28, 29, 30, 54, 61, 63, 64, 71, 73, 74, 75, 77, 80], "strengthen": 32, "stretch": 51, "stride": [39, 56], "string": [21, 22], "strip": 51, "strip_tag": [21, 22], "stroke": 17, "strong": [25, 29, 30, 56], "structur": [14, 16, 17, 24, 25, 26, 27, 28, 29, 30, 43, 45, 48, 51, 54, 56, 72, 80], "stub": 80, "student": [3, 17, 24, 25, 26, 28, 29, 30, 31, 54, 55, 56], "studi": [5, 8, 30, 54, 56], "stuff": [32, 70], "stumbl": 32, "stun": 24, "style": [20, 54, 55, 56, 57, 72], "sub": [7, 8, 31, 45, 62, 66, 80], "subfunct": 11, "subject": 28, "submiss": 32, "submit": [5, 11, 16, 23, 31, 32, 52, 56, 62, 65, 68, 70, 79, 80], "submodul": 80, "subsect": 11, "subset": 80, "succe": 61, "succeed": 77, "success": [32, 56, 58, 63], "successfulli": [15, 31, 46, 49, 62, 78], "suffer": 26, "suffic": 53, "suffici": 11, "suggest": [4, 5, 6, 14, 18, 42, 48, 49, 63, 69, 72, 73, 80], "suit": [43, 56, 80], "sum": [16, 40, 45], "summar": [6, 7, 8, 16, 40, 79], "summari": [10, 11, 26, 77], "summer": [4, 5, 6, 15, 26, 31, 55, 56, 58, 60, 66, 72], "sung": [28, 29, 30, 54, 61], "super": [19, 21, 32], "superior": [45, 51], "supervis": 16, "supervisor": 55, "suppli": [12, 13, 14, 56], "support": [24, 28, 29, 54, 56, 58, 62, 66, 68, 70, 72, 74, 76, 78, 79, 80], "suppos": [32, 53], "sure": [6, 30, 41, 42, 44, 46, 47, 49, 50, 52, 53, 54, 67, 72, 75], "surfac": 24, "surgeri": 55, "surprisingli": 32, "survei": 33, "suspect": 69, "swish": 39, "switch": 30, "symlink": 26, "symmetr": [3, 24, 27, 47], "symmetri": [5, 11], "syn": 3, "sync": 21, "syntax": 40, "synthet": [31, 32, 34, 55], "system": [15, 18, 19, 24, 27, 32, 53, 55, 72, 80], "systemat": [24, 63, 79, 80], "t": [6, 8, 32, 34, 35, 37, 38, 39, 40, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 60, 61, 66, 68, 70, 71, 72, 73, 75, 76, 78, 79], "t1": [3, 14, 33, 40, 51], "tabesh": [8, 11, 15], "tabl": [32, 37], "tackl": [32, 72, 74], "tag": [19, 21, 22, 23, 72, 80], "take": [7, 11, 12, 17, 21, 24, 25, 28, 29, 30, 31, 32, 34, 40, 42, 44, 46, 47, 48, 49, 50, 54, 57, 61, 63, 64, 67, 70, 71, 72, 73, 74, 78], "taken": [6, 7, 8, 67, 76], "talk": [44, 46, 55, 68], "tangibl": [66, 77], "tardi": 32, "target": [19, 80], "tariq": 27, "task": [3, 17, 22, 26, 32, 34, 36, 44, 46, 47, 49, 54, 55, 58, 60, 61, 62, 66, 70, 72, 74, 78, 79, 80], "taught": 79, "teach": 5, "team": [6, 26, 58, 66, 79, 80], "teammat": 79, "tech": 32, "technic": [46, 71, 74, 79], "techniqu": [4, 5, 11, 14, 16, 30, 36, 54, 65, 69, 80], "technologi": [24, 30, 32, 54, 55], "tell": [5, 68, 73], "tellaetx": [55, 58, 79], "templat": [19, 20, 21, 23, 33], "temporarili": 19, "tensor": [5, 7, 8, 11, 15, 16, 24, 27, 28, 29, 34, 38, 41, 42, 44, 46, 49, 50, 52, 53, 54, 59, 63], "tensor_slic": 48, "tensorboard": 61, "tensorflow": [25, 30, 33, 36, 40, 45, 54, 55, 57, 59, 63, 64, 67, 75, 77], "term": [7, 10, 11, 16, 30, 34, 36, 51, 60, 76], "termin": [27, 32], "test": [4, 5, 6, 7, 8, 11, 16, 17, 18, 19, 20, 24, 28, 29, 30, 32, 34, 37, 40, 41, 43, 45, 46, 51, 53, 54, 56, 58, 65, 66, 70, 72, 74, 75, 78, 79, 80], "test_cti": 47, "test_cti_fit": [47, 49, 50, 52], "test_fit": 47, "test_fwdti": 70, "test_fwdti_singlevoxel": 70, "test_split_cti_param": [47, 50], "test_voxel": [4, 5], "text": [22, 24, 26], "textfield": 21, "textual": [26, 27], "textur": [14, 30], "tf": [40, 59, 61, 63], "tfp": [35, 36], "than": [7, 11, 14, 15, 17, 21, 22, 26, 29, 30, 31, 33, 35, 37, 40, 44, 45, 46, 48, 54, 57, 61, 63, 71, 73, 74, 76], "thank": [5, 6, 26, 27, 56, 58, 60, 62, 63, 65, 66, 68, 70, 72, 74, 75, 76, 77, 78, 79], "thankfulli": [20, 64, 69], "thei": [4, 8, 19, 21, 22, 27, 30, 32, 36, 42, 45, 47, 50, 51, 53, 58, 59, 62, 63, 64, 69, 71, 72, 73, 75, 78, 79, 80], "them": [11, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 32, 33, 35, 42, 43, 45, 47, 49, 53, 54, 56, 57, 61, 63, 67, 70, 72, 75, 78], "theme": 43, "theoret": [69, 71, 75], "theori": [34, 37], "therebi": [35, 53, 80], "therefor": [5, 8, 10, 11, 14, 34, 35, 36, 38, 42, 46, 50], "thermodynam": 36, "thesi": 55, "thi": [1, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "thing": [3, 17, 20, 24, 25, 28, 29, 30, 31, 32, 35, 37, 44, 49, 51, 53, 54, 57, 63, 73], "think": [17, 20, 52, 57, 61, 64, 67, 69, 71], "third": [15, 62, 67], "thorough": [53, 72, 75, 80], "thoroughli": [28, 31, 53, 60], "those": [15, 17, 21, 24, 26, 29, 30, 34, 38, 42, 49, 54, 77], "though": [32, 47, 48, 52, 59], "thought": [18, 47, 64, 67, 69, 75], "thread": [30, 54], "three": [8, 12, 15, 24, 39, 47, 72, 80], "threw": 32, "thrill": [32, 56, 62, 78], "through": [3, 17, 18, 19, 20, 23, 27, 31, 32, 34, 35, 36, 41, 43, 44, 45, 47, 48, 51, 56, 58, 62, 63, 68, 70, 72, 74, 75, 76, 78, 79, 80], "throughout": [18, 19, 79], "throw": 76, "thu": [5, 14, 16, 61, 63, 67, 68, 71], "thumb": 21, "thumbnail": [21, 22], "thursdai": 73, "tick": 32, "tie": 77, "time": [8, 11, 16, 18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 37, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 52, 54, 56, 59, 60, 61, 62, 63, 66, 68, 71, 72, 74, 75, 76, 77, 80], "timelin": [19, 26], "timestep": [39, 40], "timezon": 21, "tini": [18, 24], "tinker": 71, "tip": [5, 6, 80], "tissu": [3, 5, 7, 17, 30, 37, 49, 50], "titl": [18, 21, 22, 31], "todai": [73, 78], "togeth": [24, 25, 26, 27, 28, 29, 30, 32, 39, 42, 54, 57, 67, 73, 75], "token": 19, "told": [32, 55], "tomorrow": [5, 78], "ton": [32, 40, 68, 70], "too": [32, 40, 57, 67, 69], "took": [8, 32, 35, 39, 42, 49, 55], "tool": [3, 17, 18, 20, 26, 54, 56, 74, 80], "toolkit": 17, "top": [6, 21, 35, 50, 77], "topdown": 51, "topic": [17, 24, 25, 26, 28, 29, 30, 32, 54, 77, 80], "topup": 30, "torch": 63, "total": [7, 50, 53, 72], "touch": 80, "toward": [21, 42, 50, 70, 80], "traceabl": 71, "track": [3, 5, 21, 24, 27, 32, 54, 59, 67, 74, 76, 80], "tracker": 26, "tracking_cod": 21, "tracking_id": 21, "tract": [25, 59], "tractogram": [25, 28, 29, 55, 63, 77], "tractographi": [5, 11, 12, 17, 24, 29, 30, 54, 55], "tractoinferno": [55, 61, 63], "tractolearn": [55, 61, 63], "tradit": [33, 35], "traffic": 21, "train": [25, 35, 36, 40, 45, 48, 51, 55, 59, 63, 67, 69, 71, 73, 75, 77], "train_step": 40, "trainabl": [36, 45], "trajectori": 5, "transfer": [59, 61, 72], "transform": [26, 43, 57], "transform_img": 51, "transit": [54, 56, 80], "translat": 55, "transpos": [6, 63], "tratometri": 28, "travel": 17, "treat": [65, 69], "tri": [14, 18, 32, 40, 44, 49, 50, 62, 67, 70, 73, 75, 77], "triag": [54, 80], "trial": [62, 74], "trick": [30, 54, 63, 73, 77], "tricki": [61, 78], "trigger": [18, 20, 80], "trivial": 6, "trk": 57, "troubl": [58, 68, 72], "troubleshoot": [78, 80], "troublesom": 17, "true": [14, 19, 20, 21, 22, 73, 75, 78], "truli": [35, 79], "trust": 18, "truth": [7, 8, 15, 44, 46, 47, 50, 70], "try": [4, 9, 17, 18, 19, 20, 21, 26, 32, 44, 49, 50, 51, 52, 53, 58, 59, 61, 62, 63, 68, 70, 71, 73, 75, 76, 77], "tumor": 30, "tune": [4, 16, 30, 40, 43, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 73, 74, 75], "tupl": 59, "turn": [32, 33], "tutori": [6, 17, 21, 24, 25, 26, 27, 33, 40, 45, 47, 49, 52, 53, 54, 74], "tweak": 40, "twitter": [20, 21], "two": [5, 7, 8, 10, 11, 15, 16, 26, 31, 35, 36, 39, 41, 43, 45, 51, 59, 62, 63, 67, 69, 70, 73, 75, 77, 80], "type": [6, 19, 20, 21, 25, 28, 29, 73, 77], "type_stub": 68, "typeerror": 70, "typic": 30, "typo": [44, 46], "u": [3, 4, 7, 11, 17, 20, 21, 26, 36, 39, 51, 56, 62, 63, 73], "ubuntu": [32, 46], "ui": [17, 24], "uij": 11, "uk": 4, "ul": 22, "ultim": [3, 17, 80], "umbrella": [24, 25, 28, 29], "unavail": 63, "uncertainti": 35, "uncondit": [39, 40], "under": [17, 18, 20, 21, 24, 25, 28, 29, 32, 40, 41, 57, 67, 80], "underestim": 15, "undergrad": [31, 32], "underli": [3, 75], "understand": [25, 27, 28, 32, 33, 34, 38, 47, 51, 56, 66, 71, 73, 74, 75, 76, 80], "understood": 33, "undertaken": 80, "undertook": 72, "undilut": 32, "unexpect": [6, 15, 40, 76], "unfortun": [16, 63, 76], "unibertsitatea": 55, "unifi": [26, 29, 30, 54, 80], "uniqu": [17, 21, 24, 30, 34, 72], "unit": [10, 16, 45, 53, 69, 75], "univers": [4, 8, 48], "unlik": 61, "unnecessari": [4, 8, 11, 53, 70, 80], "unoptim": 30, "unpars": 62, "unreduc": 40, "unring": 27, "unrol": [30, 54], "unsatisfactori": 45, "unseen": 36, "unsupervis": [24, 25, 71], "until": [16, 32, 58, 61, 62, 63, 64, 67, 69, 70, 71, 73, 75, 77, 80], "up": [18, 19, 20, 29, 56, 58, 60, 72, 74, 76, 78, 79, 80], "upcom": [1, 20, 66, 74], "updat": [1, 5, 6, 8, 16, 17, 18, 20, 21, 24, 27, 35, 45, 53, 55, 56, 57, 58, 62, 65, 66, 68, 70, 72, 74, 76, 79, 80], "update_document": [20, 21], "upgrad": 54, "upload": [18, 20, 21, 72], "upon": [17, 32, 48, 49, 50, 58, 60, 72, 80], "upper": [7, 12, 13, 15, 16], "upsampl": [39, 45, 63], "upsampling1d": 63, "upsampling2d": 39, "upstream": 6, "urdaibai": 73, "url": [19, 20, 21, 22, 72], "url_dir": [21, 22], "us": [3, 4, 5, 6, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 34, 35, 36, 38, 39, 40, 41, 43, 45, 46, 48, 50, 53, 55, 56, 57, 59, 61, 62, 63, 64, 66, 67, 68, 69, 70, 73, 74, 80], "usabl": [60, 72, 76, 80], "usag": [6, 7, 11, 12, 16, 26, 57, 60, 61], "use_facebook": 21, "use_googleplu": 21, "use_og": 21, "use_title_tag": 21, "use_twitt": 21, "user": [3, 17, 19, 21, 24, 25, 28, 29, 30, 40, 53, 54, 60, 72, 79, 80], "usernam": 23, "usual": [32, 59, 67, 73, 74], "util": [18, 28, 35, 38, 46, 74, 80], "ux": 17, "v": [5, 10, 19, 32, 40, 63, 73], "v100": 40, "vae": [33, 39, 40, 51, 67], "vain": 40, "valabregu": [12, 13, 14], "valid": [7, 8, 11, 16, 60, 73], "valu": [3, 4, 7, 8, 9, 11, 14, 15, 16, 17, 19, 21, 30, 37, 40, 44, 46, 47, 50, 53, 55, 67, 69, 75], "valuabl": [18, 26, 72, 80], "valueerror": 32, "vanilla": [64, 67, 71, 73], "var": 80, "vari": [35, 73], "variabl": [4, 8, 38, 49, 50, 59, 71, 73, 75, 77, 80], "varianc": [51, 69], "variat": [35, 45, 64, 69, 73, 75], "variou": [30, 45, 54, 56, 60, 66, 70, 72, 79, 80], "vast": 30, "ve": [32, 35, 46, 47, 48, 51, 65, 66, 72, 74, 76, 78, 79, 80], "vector": [7, 11, 30, 32, 34, 35, 36, 42, 54, 75], "vectorquant": 45, "ventral": 51, "ventur": 31, "veri": [6, 9, 11, 12, 13, 17, 19, 21, 27, 31, 32, 40, 44, 58, 63, 64, 70, 71, 73, 75, 77], "verifi": [35, 53, 72], "versatil": 74, "version": [4, 6, 7, 8, 11, 14, 15, 16, 17, 18, 20, 21, 22, 26, 27, 29, 30, 32, 48, 60, 63, 71, 78, 79], "version_nam": [20, 21], "vertex": [24, 26], "vex": 46, "via": [25, 26, 29, 30, 54], "video": [19, 21, 24, 32, 35, 37, 74], "view": [12, 19, 21, 27, 30, 79], "vij": 11, "villalon": 17, "villal\u00f3n": 30, "vimeo": 17, "virtual": [5, 40], "visibl": [27, 30, 72, 80], "vision": [30, 31, 55], "visit": [20, 21], "visitor": 80, "visual": [3, 15, 16, 17, 18, 20, 21, 22, 24, 25, 26, 27, 30, 35, 40, 45, 51, 54, 63, 73, 75, 77, 78, 80], "vital": 47, "vivo": 4, "viz": [3, 17, 24, 80], "voigt": [46, 50], "voila": 31, "volum": [3, 7, 27, 43, 47, 51, 70, 74], "volumetr": [43, 51], "voxel": [3, 5, 7, 8, 11, 12, 13, 14, 16, 47, 50, 51, 52, 53, 70], "vq": [33, 39, 40], "vqave": 51, "vqvae": 51, "vstack": 32, "vtk": [3, 17, 24, 25, 28, 29, 30, 78], "wa": [4, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 18, 19, 22, 23, 24, 31, 32, 34, 37, 38, 40, 41, 43, 44, 45, 46, 48, 49, 50, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 79, 80], "wachiou": [65, 79], "wai": [3, 6, 8, 11, 12, 17, 18, 20, 22, 24, 26, 30, 31, 37, 42, 52, 56, 57, 63, 64, 67, 71, 73, 75, 76, 77, 80], "wait": [11, 21], "walk": [72, 74, 76], "want": [4, 6, 17, 19, 22, 23, 25, 26, 30, 31, 32, 37, 54, 55, 64, 66, 69, 71, 73, 77, 80], "warn": [65, 80], "warning_for_keyword": [70, 80], "warp": 3, "wasn": [32, 44, 46, 66, 72, 76], "wast": 8, "watch": [17, 19], "water": [5, 16, 25, 70], "we": [3, 5, 7, 8, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 32, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 50, 51, 52, 53, 54, 55, 56, 59, 61, 63, 67, 69, 72, 73, 75, 77, 79, 80], "wear": 8, "weather": 64, "web": [17, 18], "websit": [5, 8, 17, 18, 20, 21, 23, 26, 27, 33, 54, 72], "websitesect": [19, 20, 21], "week": [4, 5, 7, 8, 11, 12, 16, 19, 21, 22, 23, 56, 80], "weekli": [18, 19, 35, 75], "weigh": 8, "weight": [3, 5, 7, 8, 11, 13, 14, 16, 27, 35, 37, 40, 51, 57, 59, 61, 69, 71], "welcom": 26, "well": [5, 7, 16, 17, 21, 26, 27, 29, 30, 32, 33, 35, 40, 42, 43, 45, 46, 48, 50, 51, 53, 54, 58, 60, 63, 65, 66, 72, 74, 75, 78], "went": [22, 32, 42, 63, 73], "were": [6, 7, 8, 11, 13, 14, 15, 16, 21, 24, 27, 32, 36, 38, 40, 44, 46, 47, 48, 49, 50, 51, 53, 59, 62, 63, 69, 70, 72, 73, 74, 75, 76, 79, 80], "weren": [44, 47, 79], "what": [5, 6, 11, 17, 31, 66, 74, 76, 80], "whatev": 66, "when": [4, 6, 7, 9, 10, 11, 14, 15, 17, 18, 21, 24, 32, 35, 40, 47, 49, 50, 53, 54, 55, 58, 62, 63, 67, 68, 70, 72, 73, 74, 75, 80], "whenev": [18, 20, 21], "where": [4, 6, 10, 11, 13, 15, 16, 18, 19, 21, 39, 44, 45, 47, 51, 62, 63, 64, 67, 68, 70, 71, 76, 80], "wherea": [37, 39, 40, 43, 45, 51, 63], "whether": [55, 73], "which": [3, 4, 5, 7, 8, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 40, 41, 42, 43, 44, 46, 47, 50, 53, 54, 55, 58, 59, 61, 62, 63, 64, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 79, 80], "while": [3, 7, 10, 14, 15, 17, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35, 36, 38, 40, 42, 44, 46, 49, 50, 52, 53, 54, 55, 61, 62, 64, 66, 70, 71, 72, 74, 77, 78, 79, 80], "whirlwind": 62, "white": [3, 5, 7, 8, 11, 12, 16, 17, 25, 28, 29, 30, 45], "who": [53, 54, 55, 56, 78, 79], "whole": [18, 32, 36, 58, 59, 75], "wholeheartedli": 18, "whoop": 32, "whose": 78, "why": [6, 55, 57, 68], "wide": 9, "wider": [16, 72], "widespread": 75, "widget": [17, 24], "width": [19, 39], "willing": 6, "window": [21, 40], "wip": 55, "within": [12, 16, 21, 47, 52, 63, 74, 78], "without": [4, 17, 20, 24, 27, 36, 40, 48, 51, 63, 64, 65, 66, 77, 80], "wl": [7, 70], "wls_fit_tensor": 68, "wm": 30, "woke": 32, "won": [50, 77], "wonder": 31, "word": [3, 32, 53, 73], "work": [3, 4, 5, 6, 7, 8, 11, 12, 15, 16, 18, 19, 21, 23, 24, 25, 26, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 79], "workaround": 63, "workflow": [24, 30, 54, 56, 74, 76, 80], "world": [27, 32], "worldwid": [12, 13, 16, 18, 30], "worm": 75, "worri": [61, 73], "would": [3, 17, 19, 24, 25, 26, 28, 29, 30, 31, 32, 36, 41, 42, 45, 46, 51, 54, 60, 62, 63, 64, 66, 67, 73, 75, 77, 78], "wouldn": 42, "wrap": [51, 67, 79], "wrapper": [19, 70], "wreck": 32, "write": [16, 19, 25, 26, 27, 28, 41, 42, 47, 49, 53, 55, 56, 58, 64, 77], "written": [4, 17, 19, 24, 47, 60], "wrong": [44, 80], "wrote": [19, 27, 47, 49, 57], "www": [19, 21], "x": [7, 10, 11], "x11": 40, "y": [10, 32, 80], "yai": 22, "ye": [32, 51, 75], "yeah": 67, "year": [3, 16, 17, 24, 25, 26, 28, 29, 30, 31, 32, 54, 55, 72, 80], "yeatmanlab": 74, "yellow": [16, 75], "yesterdai": 59, "yet": [32, 42, 45, 48, 51, 57, 68, 72, 78, 80], "yield": [45, 61], "you": [1, 3, 4, 5, 6, 8, 11, 13, 16, 17, 18, 20, 21, 23, 24, 25, 26, 28, 29, 30, 32, 36, 42, 54, 56, 58, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80], "your": [1, 6, 18, 23, 24, 25, 26, 28, 29, 30, 32, 54, 66, 79], "your_branch": 6, "youtub": [19, 37, 74], "youtube_embed_url": 19, "z": [7, 10, 73, 75], "z0": 19, "za": 19, "zeppelin": 24, "zero": [7, 11, 15, 44, 46, 47], "zone": 31, "zucchelli": 24, "\u03b1": 11}, "titles": ["Blog", "Calendar", "<no title>", "Google Summer of Code 2015 Announcement", "First post after acceptance! =)", "Time to start mapping brain connections and looking to brain properties in vivo", "First report (1st week of coding, challenges and ISMRM conference)", "Progress Report (DKI simulations merged and DKI real data fitted)", "Mid-Term Summary", "Artifacts in Dipy\u2019s sample data Sherbrooke\u2019s 3 shells", "Perpendicular directions samples relative to a given vector", "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation", "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation", "Further improvements on the diffusion standard statistics", "Attempt to further improve the diffusion standard statistics", "Start wrapping up - Test singularities of kurtosis statistics", "Final Project Report", "How to become a part of DIPY\u2019s Google Summer of Code 2016", "Google Summer of Code with Dipy", "Google Summer of Code Progress June 10", "Google Summer of Code Progress June 24", "Google Summer of Code Progress July 22", "Google Summer of Code Progress August 7", "Google Summer of Code Progress August 19", "Google Summer of Code 2018", "Google Summer of Code 2020", "Google Season of Docs 2020", "GSoD: High-level restructuring and end-user focus", "Google Summer of Code 2021", "Google Summer of Code 2022", "Google Summer of Code 2023", "Journey of GSOC application & acceptance : Week 0", "Community Bonding and Week 1 Insights", "Community bonding and Project kickstart : Week 1", "Signal Creation & Paper Research: Week2 Discoveries", "Deep Dive into VQ-VAE : Week 2", "VQ-VAE results and study on Diffusion models : Week 3", "CTI Simulation and QTI tutorial : Week 3", "Re-Engineering Simulation Codes with the QTI Model and Design Matrix", "Diffusion research continues: Week 4", "Carbonate Account Setup, Experiment, Debug and Repeat: Week 5", "Design Matrix Implementation and Coding with PEP8: Week 5", "Creating signal_predict Method: Testing Signal Generation", "Diffusion Model results on pre-trained VQVAE latents of NFBS MRI Dataset: Week 6 & Week 7", "Modifying Test Signal Generation", "VQVAE MONAI models & checkerboard artifacts: Week 8 & Week 9", "Generating Fit Functions : Week 8 & 9", "Adding Tests : Week 10", "Carbonate issues, GPU availability, Tensorflow errors: Week 10 & Week 11", "Making the Tests Work : Week 11", "Week12: Making Test Functions Work", "Finalized experiments using both datasets: Week 12 & Week13", "Writing Tests & Making Documentation: Week 13", "Doing Final Touch-Ups: Week 14", "Google Summer of Code 2024", "Community Bonding Period Summary and first impressions", "My Journey Begins: Community Bonding Period with DIPY", "First Week into GSoC 2024: Building the AutoEncoder, writing the training loop", "My Journey Continues: Week 1 Progress with DIPY", "Second Week into GSoC 2024: Refactoring the AutoEncoder, preliminary results", "My Journey Continues: Week 2 Progress with DIPY", "Third Week into GSoC 2024: Replicating training parameters, approaching replication", "My Journey Continues: Week 3 Progress with DIPY", "Week 4 into GSoC 2024: Weight transfer experiments, hardships, and results!", "Week 5 into GSoC 2024: Vacation, starting with the conditional AutoEncoder", "My Journey Continues: Week 4 Progress with DIPY", "My Journey Continues: Week 5 Progress with DIPY", "Week 6 into GSoC 2024: Stuck with the Variational AutoEncoder, problems with Keras", "My Journey Continues: Week 6 Progress with DIPY", "Week 7 into GSoC 2024: Starting to see the light at the end of the VAE", "My Journey Continues: Week 7 Progress with DIPY", "Week 8 into GSoC 2024: Further advances with the VAE model", "My Journey Continues: Week 8 Progress with DIPY", "Week 9 into GSoC 2024: The Conditional VAE implementation", "My Journey Continues: Week 9 Progress with DIPY", "Week 10 into GSoC 2024: Validating the conditional VAE results", "My Journey Continues: Week 10 Progress with DIPY", "Week 11 into GSoC 2024: The Adversarial AutoEncoder", "My Journey Continues: Week 11 Progress with DIPY", "My Journey Continues: Week 12 Progress with DIPY", "Google Summer of Code Final Work Product"], "titleterms": {"": [7, 9, 10, 17, 20, 21, 23, 24, 25, 28, 29, 30, 54, 56], "0": 31, "1": [6, 7, 11, 26, 30, 32, 33, 54, 56, 58, 72, 80], "10": [19, 47, 48, 75, 76], "11": [48, 49, 72, 77, 78], "12": [51, 79], "13": 52, "14": 53, "19": 23, "1st": 6, "2": [6, 7, 11, 26, 30, 35, 54, 60, 72, 80], "20": 26, "2015": [3, 12], "2016": 17, "2018": 24, "2020": [25, 26], "2021": 28, "2022": 29, "2023": 30, "2024": [54, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "21": 72, "22": 21, "24": 20, "2d": 80, "3": [7, 9, 30, 36, 37, 54, 62, 72, 80], "4": [30, 39, 54, 63, 65], "5": [30, 40, 41, 54, 64, 66], "50": 72, "53": 72, "6": [30, 43, 54, 67, 68], "7": [22, 30, 43, 69, 70], "8": [45, 46, 71, 72], "9": [45, 46, 73, 74], "A": [29, 66], "And": 23, "The": [32, 56, 73, 77], "about": [26, 32, 55], "abstract": 80, "acceler": 30, "accept": [4, 31], "accomplish": 8, "account": 40, "across": 62, "ad": [47, 72, 80], "add": [29, 30, 54], "addit": 80, "address": 79, "advanc": [11, 12, 71], "adversari": 77, "advic": [24, 25, 28, 29, 30, 54], "after": [4, 6], "ai": 54, "algorithm": [10, 29, 30, 54], "along": 30, "an": 30, "analysi": 30, "analyt": [11, 21], "announc": 3, "anywher": [32, 34, 35, 37, 38, 40, 42, 44, 45, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "ap": 30, "app": 23, "applic": [31, 74, 76, 78], "approach": 61, "approxim": 11, "ar": [26, 56], "argument": [56, 76, 79, 80], "artifact": [9, 45], "atla": 28, "attempt": 14, "august": [22, 23], "autoencod": [57, 59, 64, 67, 77], "avail": 48, "b": 80, "backend": 19, "base": [11, 12, 16, 25, 28], "becom": [17, 24, 25, 28, 29, 30, 54], "befor": 4, "begin": 56, "benefit": 80, "between": 11, "biolog": [7, 16], "blog": [0, 65, 72, 80], "blogpost": 27, "bond": [18, 32, 33, 55, 56], "both": 51, "brain": 5, "bug": 60, "build": [56, 57], "bundl": 28, "busi": 76, "c": 80, "cach": 21, "calendar": 1, "carbon": [40, 48], "challeng": [6, 27, 60, 62, 65, 66, 68, 70, 72, 74], "checkerboard": 45, "class": 80, "cli": 27, "code": [3, 4, 6, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 29, 30, 38, 41, 54, 80], "codebas": 54, "come": [32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 48, 49, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "command": 27, "commun": [18, 32, 33, 55, 56, 58], "comparison": 11, "complet": [12, 80], "comprehens": 60, "conclus": [79, 80], "condit": [64, 73, 75], "confer": 6, "connect": 5, "consist": 27, "contact": 26, "content": 20, "continu": [39, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79], "contribut": 65, "correct": 30, "correl": 30, "creat": [26, 30, 42, 78], "creation": [28, 34, 79], "cti": 37, "cuda": 54, "current": [27, 80], "d": 80, "dai": 32, "data": [7, 9, 30], "dataset": [43, 51], "debug": 40, "decor": [56, 58, 60, 62, 65, 68, 70], "deep": 35, "defin": 7, "demonstr": 62, "deploy": 79, "descript": 27, "design": [38, 41], "detail": [19, 20, 26, 80], "develop": [7, 19, 26, 27], "dicom": 25, "did": [18, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "difficulti": [60, 62, 65, 68, 70, 72, 74], "diffus": [6, 11, 12, 13, 14, 36, 39, 43, 54], "dipi": [7, 9, 17, 18, 24, 25, 26, 27, 28, 29, 30, 54, 55, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "dipy_horizon": 54, "direct": [10, 11, 12, 16], "discoveri": 34, "dispers": 30, "distort": 30, "dive": 35, "django": 23, "dki": [7, 11, 12, 16], "do": [47, 50, 53], "doc": 26, "docker": [74, 78, 80], "dockerfil": 79, "docstr": 26, "doctest": 26, "document": [21, 26, 27, 52, 60], "done": 27, "dti": 28, "end": [26, 27, 69], "engag": 58, "engin": [21, 38], "enhanc": [56, 72], "error": 48, "estim": [11, 12, 16], "expand": 58, "experi": [40, 51, 63], "extend": [25, 28, 29], "extra": 8, "far": [19, 20, 21, 22, 56, 58], "fiber": [11, 12, 16, 30], "file": 25, "final": [16, 51, 53, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79, 80], "first": [4, 6, 8, 55, 57], "fit": [7, 46], "fix": [27, 60, 65, 68, 70, 76, 78, 79], "focu": [26, 27], "foundat": 56, "framework": 11, "frontend": 20, "function": [7, 10, 11, 15, 46, 50, 60], "furi": 26, "further": [13, 14, 71], "futur": [11, 80], "gain": 16, "galleri": 22, "gener": [30, 42, 44, 46], "get": [1, 32, 34, 35, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "github": 23, "given": 10, "googl": [3, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 54, 80], "gpu": [29, 48], "gratitud": 79, "gsoc": [16, 19, 31, 32, 57, 59, 61, 63, 64, 67, 69, 71, 72, 73, 75, 77, 80], "gsod": [26, 27], "guid": 26, "hardship": 63, "hei": 23, "high": [26, 27], "homepag": 27, "horizon": [25, 28, 29, 30], "hous": 76, "how": [17, 18, 24, 25, 28, 29, 30, 54, 55], "i": [12, 18, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "idea": [26, 30, 54], "imag": [11, 12, 30, 72, 78, 80], "implement": [11, 12, 29, 30, 41, 58, 62, 65, 66, 73, 80], "import": 7, "impress": 55, "improv": [11, 13, 14, 27, 80], "inform": [29, 30, 54], "insight": 32, "integr": [21, 58, 62, 80], "interfac": 27, "intro": 32, "introduct": [24, 25, 28, 29, 30, 54], "involv": 55, "ismrm": 6, "issu": [48, 54, 72], "i\u00f1igo": 55, "journei": [19, 31, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "juli": 21, "june": [19, 20], "kera": 67, "keyword": [56, 76, 79, 80], "kickstart": 33, "kurtosi": [11, 12, 15], "last": 12, "latent": 43, "lazi": [58, 60, 62, 66, 68, 70, 80], "learn": [25, 27, 74], "level": [26, 27], "light": 69, "line": 27, "load": [58, 60, 62, 66, 68, 70, 80], "look": 5, "loop": 57, "machin": 25, "magnet": 30, "main": 7, "make": [18, 49, 50, 52], "manag": 20, "map": 5, "master": 7, "mathemat": 11, "matrix": [38, 41], "mean": 11, "measur": 16, "medium": 27, "mentor": 27, "merg": 7, "method": [16, 42], "mid": 8, "migrat": [72, 80], "minor": 27, "miss": [26, 79], "ml": 54, "model": [36, 38, 43, 45, 71], "modern": 54, "modifi": 44, "modul": [7, 16, 62], "monai": 45, "more": 19, "move": 76, "mri": [7, 25, 28, 30, 43, 54], "mutual": [29, 30, 54], "my": [56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79], "myself": 32, "new": 19, "next": [6, 7, 8, 20, 21, 22, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80], "nfb": 43, "non": [29, 30, 54], "note": 4, "now": 12, "object": 80, "odf": 11, "onli": [56, 80], "open": 32, "optim": [21, 30, 54], "order": 6, "org": 72, "organ": [27, 72, 80], "orient": 30, "our": 26, "output": 27, "overview": 18, "pa": 30, "page": [22, 72, 80], "paper": 34, "parallel": 29, "paramet": [7, 61], "part": [17, 24, 25, 28, 29, 30, 54], "peer": 65, "pep8": 41, "perform": [11, 15], "period": [4, 18, 55, 56], "perpendicular": 10, "person": 4, "phd": [74, 76, 78], "piesno": 14, "pipelin": 28, "popul": 28, "post": [4, 19, 28, 72, 80], "pr": [65, 68, 70, 76, 78], "pre": 43, "preliminari": 59, "prepar": [66, 79], "problem": [6, 67], "problemat": 15, "process": [28, 54], "product": 80, "progress": [7, 8, 11, 12, 19, 20, 21, 22, 23, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "project": [8, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30, 33, 54, 56, 79, 80], "properti": 5, "propos": [8, 80], "public": 19, "python": [7, 11, 29, 30], "qti": [37, 38], "radial": 11, "re": 38, "real": 7, "rebas": 6, "reconstruct": [6, 7, 16], "refactor": 59, "refin": [58, 60], "reflect": 79, "registr": [25, 29, 30, 54, 80], "rel": 10, "repeat": 40, "replic": 61, "report": [6, 7, 11, 12, 16], "repositori": 7, "research": [34, 39, 60], "reson": 30, "restructur": [26, 27], "result": [11, 36, 43, 59, 63, 75], "review": 65, "right": 6, "rigid": [29, 30, 54], "role": 56, "sampl": [9, 10], "search": 21, "season": 26, "second": 59, "section": 19, "see": 69, "separ": 23, "setup": 40, "shell": 9, "sherbrook": 9, "short": 27, "sidebar": [72, 80], "signal": [34, 42, 44], "signal_predict": 42, "simul": [7, 16, 37, 38], "singular": 15, "skill": 16, "small": 27, "so": [18, 19, 20, 21, 22, 56, 58], "solut": 11, "solv": 54, "some": 19, "sourc": 32, "span": 80, "specif": 28, "speed": 11, "standard": [13, 14], "start": [5, 15, 64, 69], "stat": 23, "state": 27, "statist": [11, 12, 13, 14, 15], "statu": 80, "step": [6, 7, 8, 12, 66, 79, 80], "stuck": [32, 34, 35, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "student": 4, "studi": 36, "submit": 78, "summari": [8, 16, 55], "summer": [3, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 29, 30, 54, 80], "support": 25, "suscept": 30, "synthet": 30, "system": 20, "task": 56, "technic": [26, 27], "templat": 28, "tensor": [6, 30], "tensorflow": 48, "term": 8, "test": [15, 42, 44, 47, 49, 50, 52, 60, 62], "thi": [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "thing": [46, 47, 50], "third": 61, "thought": [19, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "time": 5, "timelin": 80, "titl": 80, "topup": 29, "touch": 53, "tract": [28, 30], "tractographi": 28, "train": [43, 57, 61], "transfer": 63, "treat": 28, "tutori": [22, 37, 76, 78, 79, 80], "unexpect": 66, "up": [15, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 48, 49, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "updat": [26, 60, 78], "us": [7, 30, 51, 54], "usag": 80, "user": [26, 27], "vacat": 64, "vae": [35, 36, 69, 71, 73, 75], "valid": 75, "variat": 67, "vector": 10, "viewer": 30, "visual": [23, 28, 29], "vivo": 5, "vq": [35, 36], "vqvae": [43, 45], "wa": 27, "websit": [19, 80], "week": [6, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79], "week12": 50, "week13": 51, "week2": 34, "weekli": 80, "weight": 63, "what": [20, 21, 22, 26, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "wiki": [72, 80], "work": [27, 49, 50, 80], "workflow": [25, 27, 28, 29], "wrap": 15, "write": [52, 57], "writer": [26, 27]}}) \ No newline at end of file +Search.setIndex({"alltitles": {"1) DKI simulations on Dipy\u2019s master repository": [[7, "dki-simulations-on-dipy-s-master-repository"]], "1. Adding sidebar to blog page (dipy/dipy.org#53)": [[72, "adding-sidebar-to-blog-page-https-github-com-dipy-dipy-org-pull-53"]], "1. Addition of Tutorials": [[80, "addition-of-tutorials"]], "1. Blog Post migration (dipy/dipy.org#11)": [[72, "blog-post-migration-https-github-com-dipy-dipy-org-issues-11"]], "1. Keyword-Only Arguments": [[80, "keyword-only-arguments"], [80, "id1"]], "1.1) Import python modules and defining MRI parameters": [[7, "import-python-modules-and-defining-mri-parameters"]], "1.2) Defining biological parameters": [[7, "defining-biological-parameters"]], "1.3) Using DKI simulation main function": [[7, "using-dki-simulation-main-function"]], "2) Progresses on the development of the DKI reconstruction module": [[7, "progresses-on-the-development-of-the-dki-reconstruction-module"]], "2. Image Organization (dipy/dipy.org#50)": [[72, "image-organization-https-github-com-dipy-dipy-org-issues-50"]], "2. Lazy Loading": [[80, "lazy-loading"]], "2. Website Improvements": [[80, "website-improvements"]], "3) Next Steps": [[7, "next-steps"]], "3. Docker Integration": [[80, "docker-integration"]], "3. GSoC wiki posts migration (dipy/dipy.org#21)": [[72, "gsoc-wiki-posts-migration-https-github-com-dipy-dipy-org-issues-21"]], "Future Works": [[80, "future-work-title"]], "GSoC Weekly": [[80, "weekly-title"]], "Google Summer of Code Final Work Product": [[80, null]], "Objectives Completed": [[80, "objectives-completed-title"]], "Objectives in Progress": [[80, "objectives-progress-title"]], "Project Abstract": [[80, "project-abstract-title"]], "Proposed Objectives": [[80, "proposed-objectives-title"]], "Timeline": [[80, "timeline-title"]], "A Week of Unexpected Challenges": [[66, "a-week-of-unexpected-challenges"]], "A pythonic implementation of topup": [[29, "a-pythonic-implementation-of-topup"]], "About I\u00f1igo": [[55, "about-inigo"]], "About Myself": [[32, "about-myself"]], "About our Documentation": [[26, "about-our-documentation"]], "Accomplishing the first steps of the project proposal": [[8, "accomplishing-the-first-steps-of-the-project-proposal"]], "Add mutual information for non-rigid registration": [[29, "add-mutual-information-for-non-rigid-registration"]], "Adding Tests : Week 10": [[47, null]], "Addressing Missed Keyword Arguments": [[79, "addressing-missed-keyword-arguments"]], "Advances on the DKI based fiber direction estimates": [[12, "advances-on-the-dki-based-fiber-direction-estimates"]], "Advances on the implementation of DKI statistics": [[11, "advances-on-the-implementation-of-dki-statistics"]], "Advice": [[24, "advice"], [25, "advice"], [28, "advice"], [29, "advice"], [30, "advice"], [54, "advice"]], "After rebasing Problem #1": [[6, "after-rebasing-problem-1"]], "After rebasing Problem #2 - the right order to reconstruct the diffusion tensor": [[6, "after-rebasing-problem-2-the-right-order-to-reconstruct-the-diffusion-tensor"]], "And hey it\u2019s a separate django app!": [[23, "and-hey-it-s-a-separate-django-app"]], "Artifacts in Dipy\u2019s sample data Sherbrooke\u2019s 3 shells": [[9, null]], "Attempt to further improve the diffusion standard statistics": [[14, null]], "Before the Student Coding Period": [[4, "before-the-student-coding-period"]], "Benefits of Lazy Loading": [[80, "benefits-of-lazy-loading"]], "Blog": [[0, null]], "Blog Review": [[65, "blog-review"]], "Busy Week: PhD Applications and Moving Houses": [[76, "busy-week-phd-applications-and-moving-houses"]], "CTI Simulation and QTI tutorial : Week 3": [[37, null]], "Cache": [[21, "cache"]], "Calendar": [[1, null]], "Carbonate Account Setup, Experiment, Debug and Repeat: Week 5": [[40, null]], "Carbonate issues, GPU availability, Tensorflow errors: Week 10 & Week 11": [[48, null]], "Command-Line Interfaces:": [[27, "command-line-interfaces"]], "Community Bonding Period": [[18, "community-bonding-period"]], "Community Bonding Period Summary and first impressions": [[55, null]], "Community Bonding Period: Building the Foundation": [[56, "community-bonding-period-building-the-foundation"]], "Community Bonding and Week 1 Insights": [[32, null]], "Community Engagement": [[58, "community-engagement"]], "Community bonding and Project kickstart : Week 1": [[33, null]], "Comparison between mean kurtosis analytical and approximated solutions": [[11, "comparison-between-mean-kurtosis-analytical-and-approximated-solutions"]], "Comparison between radial kurtosis analytical and approximated solutions": [[11, "comparison-between-radial-kurtosis-analytical-and-approximated-solutions"]], "Comprehensive Testing and Bug Fixing": [[60, "comprehensive-testing-and-bug-fixing"]], "Conclusion": [[80, "conclusion"]], "Contact": [[26, "contact"]], "Creating a Docker Image for DIPY": [[78, "creating-a-docker-image-for-dipy"]], "Creating signal_predict Method: Testing Signal Generation": [[42, null]], "Current State of the Project:": [[27, "current-state-of-the-project"]], "Current Status": [[80, "current-status"], [80, "id3"]], "DIPY + FURY project ideas for GSoD\u201920": [[26, "dipy-fury-project-ideas-for-gsod-20"]], "DIPY Homepage:": [[27, "dipy-homepage"]], "DIPY support for DICOM files": [[25, "dipy-support-for-dicom-files"]], "DIPY-Tract-or-Treat: DIPY DTI Post-Processing Pipeline": [[28, "dipy-tract-or-treat-dipy-dti-post-processing-pipeline"]], "DKI based biological measures": [[16, "dki-based-biological-measures"]], "DKI based fiber direction estimates": [[11, "dki-based-fiber-direction-estimates"]], "DKI based fiber direction estimation methods": [[16, "dki-based-fiber-direction-estimation-methods"]], "DKI based simulations": [[16, "dki-based-simulations"]], "DKI reconstruction modules": [[16, "dki-reconstruction-modules"]], "Decorator Function Refinement": [[60, "decorator-function-refinement"]], "Decorator Implementation PR Fix": [[65, "decorator-implementation-pr-fix"]], "Decorator Implementation across Modules": [[62, "decorator-implementation-across-modules"]], "Decorator PR Fixes": [[68, "decorator-pr-fixes"], [70, "decorator-pr-fixes"]], "Deep Dive into VQ-VAE : Week 2": [[35, null]], "Design Matrix Implementation and Coding with PEP8: Week 5": [[41, null]], "Details of Backend Developed So Far": [[19, "details-of-backend-developed-so-far"]], "Details of content management system": [[20, "details-of-content-management-system"]], "Details of the frontend": [[20, "details-of-the-frontend"]], "Did I get stuck": [[47, "did-i-get-stuck"]], "Did I get stuck anywhere": [[32, "did-i-get-stuck-anywhere"], [34, "did-i-get-stuck-anywhere"], [35, "did-i-get-stuck-anywhere"], [37, "did-i-get-stuck-anywhere"], [38, "did-i-get-stuck-anywhere"], [40, "did-i-get-stuck-anywhere"], [42, "did-i-get-stuck-anywhere"], [44, "did-i-get-stuck-anywhere"], [45, "did-i-get-stuck-anywhere"], [48, "did-i-get-stuck-anywhere"], [49, "did-i-get-stuck-anywhere"], [51, "did-i-get-stuck-anywhere"], [55, "did-i-get-stuck-anywhere"], [57, "did-i-get-stuck-anywhere"], [59, "did-i-get-stuck-anywhere"], [61, "did-i-get-stuck-anywhere"], [63, "did-i-get-stuck-anywhere"], [64, "did-i-get-stuck-anywhere"], [67, "did-i-get-stuck-anywhere"], [69, "did-i-get-stuck-anywhere"], [71, "did-i-get-stuck-anywhere"], [73, "did-i-get-stuck-anywhere"], [75, "did-i-get-stuck-anywhere"], [77, "did-i-get-stuck-anywhere"]], "Did i get stuck this week": [[46, "did-i-get-stuck-this-week"]], "Difficulties & Challenges": [[60, "difficulties-challenges"], [62, "difficulties-challenges"], [65, "difficulties-challenges"], [68, "difficulties-challenges"], [70, "difficulties-challenges"], [72, "difficulties-challenges"], [74, "difficulties-challenges"]], "Diffusion Model results on pre-trained VQVAE latents of NFBS MRI Dataset: Week 6 & Week 7": [[43, null]], "Diffusion research continues: Week 4": [[39, null]], "Dockerfile Creation and Deployment": [[79, "dockerfile-creation-and-deployment"]], "Documentation Integration": [[21, "documentation-integration"]], "Documentation Updates": [[60, "documentation-updates"]], "Documentation that was developed:": [[27, "documentation-that-was-developed"]], "Doing Final Touch-Ups: Week 14": [[53, null]], "Enhancement": [[72, "enhancement"]], "Expanding the Decorator Implementation": [[58, "expanding-the-decorator-implementation"]], "Extend DIPY Horizon workflow": [[25, "extend-dipy-horizon-workflow"]], "Extend DIPY Horizon workflow for Visualization": [[28, "extend-dipy-horizon-workflow-for-visualization"], [29, "extend-dipy-horizon-workflow-for-visualization"]], "Extra steps accomplished": [[8, "extra-steps-accomplished"]], "Final Project Report": [[16, null]], "Final Thoughts": [[56, "final-thoughts"], [58, "final-thoughts"], [60, "final-thoughts"], [62, "final-thoughts"], [66, "final-thoughts"], [68, "final-thoughts"], [70, "final-thoughts"], [72, "final-thoughts"], [74, "final-thoughts"], [76, "final-thoughts"], [78, "final-thoughts"], [79, "final-thoughts"]], "Finalized experiments using both datasets: Week 12 & Week13": [[51, null]], "First Week into GSoC 2024: Building the AutoEncoder, writing the training loop": [[57, null]], "First post after acceptance! =)": [[4, null]], "First report (1st week of coding, challenges and ISMRM conference)": [[6, null]], "Fixing Tutorials for the Keyword Argument PR": [[76, "fixing-tutorials-for-the-keyword-argument-pr"]], "Function\u2019s Algorithm": [[10, "function-s-algorithm"]], "Further improvements on the diffusion standard statistics": [[13, null]], "Future directions of the DKI statistic implementation": [[11, "future-directions-of-the-dki-statistic-implementation"]], "Future directions of the DKI-ODF implementation": [[11, "future-directions-of-the-dki-odf-implementation"]], "GPU parallelization of DIPY algorithms": [[29, "gpu-parallelization-of-dipy-algorithms"]], "GSoD: High-level restructuring and end-user focus": [[27, null]], "Gallery Page": [[22, "gallery-page"]], "Generating Fit Functions : Week 8 & 9": [[46, null]], "Get Calendar": [[1, "get-calendar"]], "GitHub stats visualization": [[23, "github-stats-visualization"]], "Google Analytics": [[21, "google-analytics"]], "Google Season of Docs 2020": [[26, null]], "Google Summer of Code 2015 Announcement": [[3, null]], "Google Summer of Code 2018": [[24, null]], "Google Summer of Code 2020": [[25, null]], "Google Summer of Code 2021": [[28, null]], "Google Summer of Code 2022": [[29, null]], "Google Summer of Code 2023": [[30, null]], "Google Summer of Code 2024": [[54, null]], "Google Summer of Code Progress August 19": [[23, null]], "Google Summer of Code Progress August 7": [[22, null]], "Google Summer of Code Progress July 22": [[21, null]], "Google Summer of Code Progress June 10": [[19, null]], "Google Summer of Code Progress June 24": [[20, null]], "Google Summer of Code with Dipy": [[18, null]], "How did I get involved with DIPY": [[55, "how-did-i-get-involved-with-dipy"]], "How to become a part of DIPY\u2019s Google Summer of Code 2016": [[17, null]], "How to become a part of DIPY\u2019s Google Summer of Code 2018": [[24, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2018"]], "How to become a part of DIPY\u2019s Google Summer of Code 2020": [[25, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2020"]], "How to become a part of DIPY\u2019s Google Summer of Code 2021": [[28, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2021"]], "How to become a part of DIPY\u2019s Google Summer of Code 2022": [[29, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2022"]], "How to become a part of DIPY\u2019s Google Summer of Code 2023": [[30, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2023"]], "How to become a part of DIPY\u2019s Google Summer of Code 2024": [[54, "how-to-become-a-part-of-dipy-s-google-summer-of-code-2024"]], "ISMRM Conference": [[6, "ismrm-conference"]], "Implementation Details": [[80, "implementation-details"]], "Implementation in python 1": [[11, "implementation-in-python-1"]], "Implementation in python 2": [[11, "implementation-in-python-2"]], "Implementation of DKI statistics is now complete!!!": [[12, "implementation-of-dki-statistics-is-now-complete"]], "Improve Consistency:": [[27, "improve-consistency"]], "Improving the speed performance of functions": [[11, "improving-the-speed-performance-of-functions"]], "Intro to Open-Source and GSoC": [[32, "intro-to-open-source-and-gsoc"]], "Introduction to DIPY": [[24, "introduction-to-dipy"], [25, "introduction-to-dipy"], [28, "introduction-to-dipy"], [29, "introduction-to-dipy"], [30, "introduction-to-dipy"], [54, "introduction-to-dipy"]], "Issues in dipy.org": [[72, "issues-in-dipy-org"]], "Journey of GSOC application & acceptance : Week 0": [[31, null]], "Last steps for the Google Summer of Code 2015": [[12, "last-steps-for-the-google-summer-of-code-2015"]], "Lazy Loading Demonstration": [[62, "lazy-loading-demonstration"]], "Lazy Loading Integration": [[58, "lazy-loading-integration"]], "Lazy Loading PR": [[68, "lazy-loading-pr"], [70, "lazy-loading-pr"]], "Lazy Loading Research": [[60, "lazy-loading-research"]], "Learning Docker": [[74, "learning-docker"]], "Learnings and Challenges:": [[27, "learnings-and-challenges"]], "Machine learning-based MRI registration": [[25, "machine-learning-based-mri-registration"]], "Making the Tests Work : Week 11": [[49, null]], "Mathematical framework": [[11, "mathematical-framework"]], "Medium Blogposts:": [[27, "medium-blogposts"]], "Mentors:": [[27, "mentors"]], "Mid-Term Summary": [[8, null]], "Modifying Test Signal Generation": [[44, null]], "My Journey Begins: Community Bonding Period with DIPY": [[56, null]], "My Journey Continues: Week 1 Progress with DIPY": [[58, null]], "My Journey Continues: Week 10 Progress with DIPY": [[76, null]], "My Journey Continues: Week 11 Progress with DIPY": [[78, null]], "My Journey Continues: Week 12 Progress with DIPY": [[79, null]], "My Journey Continues: Week 2 Progress with DIPY": [[60, null]], "My Journey Continues: Week 3 Progress with DIPY": [[62, null]], "My Journey Continues: Week 4 Progress with DIPY": [[65, null]], "My Journey Continues: Week 5 Progress with DIPY": [[66, null]], "My Journey Continues: Week 6 Progress with DIPY": [[68, null]], "My Journey Continues: Week 7 Progress with DIPY": [[70, null]], "My Journey Continues: Week 8 Progress with DIPY": [[72, null]], "My Journey Continues: Week 9 Progress with DIPY": [[74, null]], "News Posts": [[19, "news-posts"]], "Next Steps": [[66, "next-steps"], [79, "next-steps"], [80, "next-steps"], [80, "id2"], [80, "id4"]], "Next Week": [[60, "next-week"], [62, "next-week"], [65, "next-week"], [68, "next-week"], [70, "next-week"], [72, "next-week"], [74, "next-week"], [76, "next-week"], [78, "next-week"]], "Next steps": [[6, "next-steps"], [8, "next-steps"]], "Objectives": [[80, "objectives"]], "Organization: DIPY": [[27, "organization-dipy"]], "Outputs of CLI workflows:": [[27, "outputs-of-cli-workflows"]], "PIESNO": [[14, "piesno"]], "Peer Review Contributions": [[65, "peer-review-contributions"]], "Perpendicular directions samples relative to a given vector": [[10, null]], "Personal Note": [[4, "personal-note"]], "PhD Application Submitted": [[78, "phd-application-submitted"]], "PhD Applications": [[74, "phd-applications"]], "Population-based MRI Template Creation": [[28, "population-based-mri-template-creation"]], "Population-specific Tractography Bundle Atlas Creation": [[28, "population-specific-tractography-bundle-atlas-creation"]], "Preparing for Lazy Loading Implementation": [[66, "preparing-for-lazy-loading-implementation"]], "Preparing for Project Conclusion": [[79, "preparing-for-project-conclusion"]], "Problematic performance near to function singularities": [[15, "problematic-performance-near-to-function-singularities"]], "Progress Report (DKI simulations merged and DKI real data fitted)": [[7, null]], "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation": [[11, null], [12, null]], "Progress So Far": [[56, "progress-so-far"], [58, "progress-so-far"]], "Progress so far": [[20, "progress-so-far"], [21, "progress-so-far"], [22, "progress-so-far"]], "Progress summary": [[8, "progress-summary"]], "Project 1. Add mutual information for non-rigid registration": [[30, "project-1-add-mutual-information-for-non-rigid-registration"], [54, "project-1-add-mutual-information-for-non-rigid-registration"]], "Project 2. CUDA non-rigid registration": [[54, "project-2-cuda-non-rigid-registration"]], "Project 2. Generalized along tract analysis of fiber orientation dispersion": [[30, "project-2-generalized-along-tract-analysis-of-fiber-orientation-dispersion"]], "Project 3. Correlation Tensor Magnetic Resonance Imaging": [[30, "project-3-correlation-tensor-magnetic-resonance-imaging"]], "Project 3. DIPY algorithms Optimizations": [[54, "project-3-dipy-algorithms-optimizations"]], "Project 4. Creating Synthetic MRI data": [[30, "project-4-creating-synthetic-mri-data"]], "Project 4. Solving Issues in DIPY_HORIZON": [[54, "project-4-solving-issues-in-dipy-horizon"]], "Project 5. An optimal pythonic implementation of Susceptibility Distortion Correction using AP PA data": [[30, "project-5-an-optimal-pythonic-implementation-of-susceptibility-distortion-correction-using-ap-pa-data"]], "Project 5. Project ideas using AI/ML in Diffusion MRI processing": [[54, "project-5-project-ideas-using-ai-ml-in-diffusion-mri-processing"]], "Project 6. DIPY algorithms Optimizations": [[30, "project-6-dipy-algorithms-optimizations"]], "Project 6. Modernize DIPY Codebase": [[54, "project-6-modernize-dipy-codebase"]], "Project 7. Accelerated MRI viewer \u2013 Horizon": [[30, "project-7-accelerated-mri-viewer-horizon"]], "Project Ideas": [[54, "project-ideas"]], "Project Ideas (7)": [[30, "project-ideas-7"]], "Project Overview": [[18, "project-overview"]], "Project idea 1: High-level restructuring and end-user focus": [[26, "project-idea-1-high-level-restructuring-and-end-user-focus"]], "Project idea 2: [FURY] Create User and Developer Guides. Update missing docstrings/doctests": [[26, "project-idea-2-fury-create-user-and-developer-guides-update-missing-docstrings-doctests"]], "Project summary": [[16, "project-summary"]], "Project-Task 1: Enhancing Keyword-Only Arguments with Decorators": [[56, "project-task-1-enhancing-keyword-only-arguments-with-decorators"]], "Projects": [[17, "projects"], [24, "projects"], [25, "projects"], [26, "projects"], [28, "projects"], [29, "projects"]], "Projects in Details:": [[26, "projects-in-details"]], "Publications": [[19, "publications"]], "Re-Engineering Simulation Codes with the QTI Model and Design Matrix": [[38, null]], "Rebasing": [[6, "rebasing"]], "Refining Decorator Implementation": [[58, "refining-decorator-implementation"]], "Reflections and Gratitude": [[79, "reflections-and-gratitude"]], "Results": [[11, "results"]], "Search Engine Optimizations": [[21, "search-engine-optimizations"]], "Second Week into GSoC 2024: Refactoring the AutoEncoder, preliminary results": [[59, null]], "Short Description of the Work Done:": [[27, "short-description-of-the-work-done"]], "Signal Creation & Paper Research: Week2 Discoveries": [[34, null]], "Skills gained on GSoC": [[16, "skills-gained-on-gsoc"]], "Small Improvements/ Minor Fixes:": [[27, "small-improvements-minor-fixes"]], "So how did I make it?": [[18, "so-how-did-i-make-it"]], "Some more thoughts on the GSOC journey so far": [[19, "some-more-thoughts-on-the-gsoc-journey-so-far"]], "Start wrapping up - Test singularities of kurtosis statistics": [[15, null]], "Technical Writer:": [[27, "technical-writer"]], "Technical Writers": [[26, "technical-writers"]], "Testing and Continuous Integration": [[62, "testing-and-continuous-integration"]], "The Day": [[32, "the-day"]], "The Role of Decorators": [[56, "the-role-of-decorators"]], "Things coming up next week": [[46, "things-coming-up-next-week"]], "Things to do next week": [[47, "things-to-do-next-week"], [50, "things-to-do-next-week"]], "Third Week into GSoC 2024: Replicating training parameters, approaching replication": [[61, null]], "Time to start mapping brain connections and looking to brain properties in vivo": [[5, null]], "Tutorial Fixes PR Update": [[78, "tutorial-fixes-pr-update"]], "Tutorial Fixes Progress": [[79, "tutorial-fixes-progress"]], "Tutorials Page": [[22, "tutorials-page"]], "VQ-VAE results and study on Diffusion models : Week 3": [[36, null]], "VQVAE MONAI models & checkerboard artifacts: Week 8 & Week 9": [[45, null]], "Website Sections": [[19, "website-sections"]], "Week 10 into GSoC 2024: Validating the conditional VAE results": [[75, null]], "Week 11 into GSoC 2024: The Adversarial AutoEncoder": [[77, null]], "Week 4 into GSoC 2024: Weight transfer experiments, hardships, and results!": [[63, null]], "Week 5 into GSoC 2024: Vacation, starting with the conditional AutoEncoder": [[64, null]], "Week 6 into GSoC 2024: Stuck with the Variational AutoEncoder, problems with Keras": [[67, null]], "Week 7 into GSoC 2024: Starting to see the light at the end of the VAE": [[69, null]], "Week 8 into GSoC 2024: Further advances with the VAE model": [[71, null]], "Week 9 into GSoC 2024: The Conditional VAE implementation": [[73, null]], "Week12: Making Test Functions Work": [[50, null]], "Weekly Journey": [[80, "id8"]], "What I did this Week": [[41, "what-i-did-this-week"]], "What I did this week": [[32, "what-i-did-this-week"], [33, "what-i-did-this-week"], [34, "what-i-did-this-week"], [35, "what-i-did-this-week"], [36, "what-i-did-this-week"], [38, "what-i-did-this-week"], [39, "what-i-did-this-week"], [40, "what-i-did-this-week"], [42, "what-i-did-this-week"], [43, "what-i-did-this-week"], [44, "what-i-did-this-week"], [45, "what-i-did-this-week"], [46, "what-i-did-this-week"], [47, "what-i-did-this-week"], [48, "what-i-did-this-week"], [49, "what-i-did-this-week"], [50, "what-i-did-this-week"], [51, "what-i-did-this-week"], [52, "what-i-did-this-week"], [53, "what-i-did-this-week"], [57, "what-i-did-this-week"], [59, "what-i-did-this-week"], [61, "what-i-did-this-week"], [63, "what-i-did-this-week"], [64, "what-i-did-this-week"], [67, "what-i-did-this-week"], [69, "what-i-did-this-week"], [71, "what-i-did-this-week"], [73, "what-i-did-this-week"], [75, "what-i-did-this-week"], [77, "what-i-did-this-week"]], "What I did this week and in the Community Bonding Period": [[55, "what-i-did-this-week-and-in-the-community-bonding-period"]], "What I did this week:": [[37, "what-i-did-this-week"]], "What Is coming up next week": [[34, "what-is-coming-up-next-week"], [35, "what-is-coming-up-next-week"], [39, "what-is-coming-up-next-week"], [40, "what-is-coming-up-next-week"], [42, "what-is-coming-up-next-week"], [43, "what-is-coming-up-next-week"], [48, "what-is-coming-up-next-week"]], "What Is coming up next week:": [[37, "what-is-coming-up-next-week"]], "What are DIPY and FURY?": [[26, "what-are-dipy-and-fury"]], "What are Keyword-Only Arguments?": [[56, "what-are-keyword-only-arguments"]], "What is coming up Next Week": [[53, "what-is-coming-up-next-week"]], "What is coming up next Week": [[32, "what-is-coming-up-next-week"], [38, "what-is-coming-up-next-week"], [41, "what-is-coming-up-next-week"], [52, "what-is-coming-up-next-week"]], "What is coming up next week": [[36, "what-is-coming-up-next-week"], [44, "what-is-coming-up-next-week"], [45, "what-is-coming-up-next-week"], [49, "what-is-coming-up-next-week"], [51, "what-is-coming-up-next-week"], [55, "what-is-coming-up-next-week"], [57, "what-is-coming-up-next-week"], [59, "what-is-coming-up-next-week"], [61, "what-is-coming-up-next-week"], [63, "what-is-coming-up-next-week"], [64, "what-is-coming-up-next-week"], [67, "what-is-coming-up-next-week"], [69, "what-is-coming-up-next-week"], [71, "what-is-coming-up-next-week"], [73, "what-is-coming-up-next-week"], [75, "what-is-coming-up-next-week"], [77, "what-is-coming-up-next-week"]], "What next?": [[22, "what-next"]], "What\u2019s Next?": [[56, "whats-next"]], "What\u2019s next": [[20, "what-s-next"], [21, "what-s-next"]], "Writing Tests & Making Documentation: Week 13": [[52, null]], "a. 2D Registration": [[80, "a-2d-registration"]], "a. Blog Post Migration": [[80, "a-blog-post-migration"]], "b. Docker Usage": [[80, "b-docker-usage"]], "b. Image Organization Improvement": [[80, "b-image-organization-improvement"]], "c. DIPY Wiki Migration": [[80, "c-dipy-wiki-migration"]], "d. Adding Sidebars to Blog Page": [[80, "d-adding-sidebars-to-blog-page"]]}, "docnames": ["blog", "calendar", "index", "posts/2015/2015_01_15_eleftherios_gsoc_announcement", "posts/2015/2015_05_17_Rafael", "posts/2015/2015_05_24_Rafael", "posts/2015/2015_06_05_Rafael", "posts/2015/2015_06_19_Rafael", "posts/2015/2015_07_02_Rafael", "posts/2015/2015_07_08_Rafael", "posts/2015/2015_07_09_Rafael", "posts/2015/2015_07_24_Rafael", "posts/2015/2015_08_07_Rafael", "posts/2015/2015_08_13_Rafael", "posts/2015/2015_08_14_Rafael", "posts/2015/2015_08_16_Rafael", "posts/2015/2015_08_24_Rafael", "posts/2016/2016_02_01_eleftherios_gsoc_announcement", "posts/2016/2016_05_16_Bishakh", "posts/2016/2016_06_10_Bishakh", "posts/2016/2016_06_24_Bishakh", "posts/2016/2016_07_22_Bishakh", "posts/2016/2016_08_07_Bishakh", "posts/2016/2016_08_19_Bishakh", "posts/2018/2018_01_24_eleftherios_gsoc_announcement", "posts/2020/2020_02_05_serge_gsoc_announcement", "posts/2020/2020_05_04_serge_gsod_announcement", "posts/2020/2020_12_05_Areesha", "posts/2021/2021_01_15_serge_gsoc_announcement", "posts/2022/2022_04_05_serge_gsoc_announcement", "posts/2023/2023_02_02_serge_gsoc_announcement", "posts/2023/2023_05_19_vara_week0", "posts/2023/2023_05_29_Shilpi_Week_0_1", "posts/2023/2023_05_29_vara_week1", "posts/2023/2023_06_05_Shilpi_week2", "posts/2023/2023_06_05_vara_week2", "posts/2023/2023_06_12_vara_week3", "posts/2023/2023_06_13_Shipi_week3", "posts/2023/2023_06_19_Shilpi_week4", "posts/2023/2023_06_19_vara_week4", "posts/2023/2023_06_26_vara_week5", "posts/2023/2023_07_06_shilpi_week5", "posts/2023/2023_07_06_shilpi_week6", "posts/2023/2023_07_10_vara_week6_and_week7", "posts/2023/2023_07_12_Shilpi_week7", "posts/2023/2023_07_24_vara_week_8_9", "posts/2023/2023_07_27_Shilpi_week_8_9", "posts/2023/2023_07_31_Shilpi_week10", "posts/2023/2023_08_07_vara_week_10_11", "posts/2023/2023_08_08_Shilpi_week11", "posts/2023/2023_08_15_Shilpi_week12", "posts/2023/2023_08_21_vara_week_12_13", "posts/2023/2023_08_22_Shilpi_Week13", "posts/2023/2023_08_28_Shilpi_Week14", "posts/2024/2024_01_10_serge_gsoc_announcement", "posts/2024/2024_05_27_Inigo_week_0", "posts/2024/2024_05_27_kaustav_week0", "posts/2024/2024_05_31_Inigo_week_1", "posts/2024/2024_06_03_kaustav_week_1", "posts/2024/2024_06_07_Inigo_week_2", "posts/2024/2024_06_12_kaustav_week_2", "posts/2024/2024_06_14_Inigo_week_3", "posts/2024/2024_06_19_kaustav_week_3", "posts/2024/2024_06_21_Inigo_week_4", "posts/2024/2024_06_28_Inigo_week_5", "posts/2024/2024_06_30_kaustav_week_4", "posts/2024/2024_07_01_kaustav_week_5", "posts/2024/2024_07_06_Inigo_week_6", "posts/2024/2024_07_07_kaustav_week_6", "posts/2024/2024_07_12_Inigo_week_7", "posts/2024/2024_07_15_kaustav_week_7", "posts/2024/2024_07_19_Inigo_week_8", "posts/2024/2024_07_22_kaustav_week_8", "posts/2024/2024_07_26_Inigo_week_9", "posts/2024/2024_07_29_kaustav_week_9", "posts/2024/2024_08_02_Inigo_week_10", "posts/2024/2024_08_05_kaustav_week_10", "posts/2024/2024_08_09_Inigo_week_11", "posts/2024/2024_08_12_kaustav_week_11", "posts/2024/2024_08_19_kaustav_week_12", "posts/2024/2024_08_21_kaustav_final_report"], "envversion": {"sphinx": 62, "sphinx.domains.c": 3, "sphinx.domains.changeset": 1, "sphinx.domains.citation": 1, "sphinx.domains.cpp": 9, "sphinx.domains.index": 1, "sphinx.domains.javascript": 3, "sphinx.domains.math": 2, "sphinx.domains.python": 4, "sphinx.domains.rst": 2, "sphinx.domains.std": 2, "sphinx.ext.intersphinx": 1}, "filenames": ["blog.rst", "calendar.rst", "index.rst", "posts/2015/2015_01_15_eleftherios_gsoc_announcement.rst", "posts/2015/2015_05_17_Rafael.rst", "posts/2015/2015_05_24_Rafael.rst", "posts/2015/2015_06_05_Rafael.rst", "posts/2015/2015_06_19_Rafael.rst", "posts/2015/2015_07_02_Rafael.rst", "posts/2015/2015_07_08_Rafael.rst", "posts/2015/2015_07_09_Rafael.rst", "posts/2015/2015_07_24_Rafael.rst", "posts/2015/2015_08_07_Rafael.rst", "posts/2015/2015_08_13_Rafael.rst", "posts/2015/2015_08_14_Rafael.rst", "posts/2015/2015_08_16_Rafael.rst", "posts/2015/2015_08_24_Rafael.rst", "posts/2016/2016_02_01_eleftherios_gsoc_announcement.rst", "posts/2016/2016_05_16_Bishakh.rst", "posts/2016/2016_06_10_Bishakh.rst", "posts/2016/2016_06_24_Bishakh.rst", "posts/2016/2016_07_22_Bishakh.rst", "posts/2016/2016_08_07_Bishakh.rst", "posts/2016/2016_08_19_Bishakh.rst", "posts/2018/2018_01_24_eleftherios_gsoc_announcement.rst", "posts/2020/2020_02_05_serge_gsoc_announcement.rst", "posts/2020/2020_05_04_serge_gsod_announcement.rst", "posts/2020/2020_12_05_Areesha.rst", "posts/2021/2021_01_15_serge_gsoc_announcement.rst", "posts/2022/2022_04_05_serge_gsoc_announcement.rst", "posts/2023/2023_02_02_serge_gsoc_announcement.rst", "posts/2023/2023_05_19_vara_week0.rst", "posts/2023/2023_05_29_Shilpi_Week_0_1.rst", "posts/2023/2023_05_29_vara_week1.rst", "posts/2023/2023_06_05_Shilpi_week2.rst", "posts/2023/2023_06_05_vara_week2.rst", "posts/2023/2023_06_12_vara_week3.rst", "posts/2023/2023_06_13_Shipi_week3.rst", "posts/2023/2023_06_19_Shilpi_week4.rst", "posts/2023/2023_06_19_vara_week4.rst", "posts/2023/2023_06_26_vara_week5.rst", "posts/2023/2023_07_06_shilpi_week5.rst", "posts/2023/2023_07_06_shilpi_week6.rst", "posts/2023/2023_07_10_vara_week6_and_week7.rst", "posts/2023/2023_07_12_Shilpi_week7.rst", "posts/2023/2023_07_24_vara_week_8_9.rst", "posts/2023/2023_07_27_Shilpi_week_8_9.rst", "posts/2023/2023_07_31_Shilpi_week10.rst", "posts/2023/2023_08_07_vara_week_10_11.rst", "posts/2023/2023_08_08_Shilpi_week11.rst", "posts/2023/2023_08_15_Shilpi_week12.rst", "posts/2023/2023_08_21_vara_week_12_13.rst", "posts/2023/2023_08_22_Shilpi_Week13.rst", "posts/2023/2023_08_28_Shilpi_Week14.rst", "posts/2024/2024_01_10_serge_gsoc_announcement.rst", "posts/2024/2024_05_27_Inigo_week_0.rst", "posts/2024/2024_05_27_kaustav_week0.rst", "posts/2024/2024_05_31_Inigo_week_1.rst", "posts/2024/2024_06_03_kaustav_week_1.rst", "posts/2024/2024_06_07_Inigo_week_2.rst", "posts/2024/2024_06_12_kaustav_week_2.rst", "posts/2024/2024_06_14_Inigo_week_3.rst", "posts/2024/2024_06_19_kaustav_week_3.rst", "posts/2024/2024_06_21_Inigo_week_4.rst", "posts/2024/2024_06_28_Inigo_week_5.rst", "posts/2024/2024_06_30_kaustav_week_4.rst", "posts/2024/2024_07_01_kaustav_week_5.rst", "posts/2024/2024_07_06_Inigo_week_6.rst", "posts/2024/2024_07_07_kaustav_week_6.rst", "posts/2024/2024_07_12_Inigo_week_7.rst", "posts/2024/2024_07_15_kaustav_week_7.rst", "posts/2024/2024_07_19_Inigo_week_8.rst", "posts/2024/2024_07_22_kaustav_week_8.rst", "posts/2024/2024_07_26_Inigo_week_9.rst", "posts/2024/2024_07_29_kaustav_week_9.rst", "posts/2024/2024_08_02_Inigo_week_10.rst", "posts/2024/2024_08_05_kaustav_week_10.rst", "posts/2024/2024_08_09_Inigo_week_11.rst", "posts/2024/2024_08_12_kaustav_week_11.rst", "posts/2024/2024_08_19_kaustav_week_12.rst", "posts/2024/2024_08_21_kaustav_final_report.rst"], "indexentries": {}, "objects": {}, "objnames": {}, "objtypes": {}, "terms": {"": [3, 5, 6, 8, 11, 12, 15, 16, 19, 22, 26, 27, 31, 32, 34, 35, 37, 39, 40, 41, 43, 45, 46, 47, 48, 49, 50, 51, 53, 55, 60, 62, 67, 72, 74, 77, 78, 79, 80], "0": [10, 14, 15, 16, 19, 21, 22, 27, 45, 46, 51, 56, 69, 70, 80], "0003": 70, "0013": [45, 51], "0015": 51, "0017": 70, "003": 70, "0031": 45, "0037": 45, "0067": 45, "01": 80, "02812095": 70, "03": 80, "05": 80, "06": 80, "07": 80, "08": 80, "0x13e1ce110": 70, "1": [5, 8, 9, 10, 12, 13, 14, 15, 16, 19, 21, 22, 27, 29, 40, 43, 45, 48, 51, 53, 60, 61, 62, 65, 68, 69, 70, 71, 73, 74], "10": [16, 26, 30, 43, 45, 80], "100": [36, 40, 43, 53, 70, 80], "1000": 14, "1002": 30, "1016": 30, "103533906": 17, "1059": 50, "108": 40, "1082": 20, "108989": 30, "10th": 18, "11": [16, 32, 80], "112": 40, "116605": 30, "12": [12, 16, 32, 80], "120": [69, 71], "125": 51, "128": [43, 51], "13": [16, 21, 70], "14": [11, 12], "140": 21, "15": [23, 62, 80], "150": 59, "156": 14, "16": 63, "161": 70, "17472072": 70, "1749802": 70, "175": [14, 30, 54], "18": 70, "18018944": 70, "1825": 32, "19": [7, 16, 80], "191": 70, "1d": [63, 64], "1e": 63, "1e10": 69, "1e3": 15, "1st": 56, "2": [5, 8, 10, 12, 13, 14, 15, 16, 19, 22, 34, 39, 40, 43, 45, 46, 47, 48, 55, 58, 61, 62, 64, 65, 68, 73, 75], "20": [19, 30, 70, 72], "200": [14, 21, 36, 40, 43], "2000": 14, "2003": 30, "2011": [15, 16], "2014": 11, "2015": [8, 72, 80], "2016": [18, 23, 24], "2019": 30, "2020": [27, 30], "2021": [30, 32, 55], "2023": 31, "2024": [32, 56, 80], "20758655": 70, "21": 80, "210": 70, "21098605": 70, "211": 30, "22": [18, 70, 80], "2211": 27, "2212": 27, "2218": 27, "2220": 27, "2244": 27, "2246": 27, "2248": 27, "2261": 27, "2273": 27, "2275": 27, "2277": 27, "2282": 27, "2283": 27, "2284": 27, "2286": 27, "2287": 27, "2292": 27, "2294": 27, "2295": 27, "2296": 27, "23": 18, "23rd": 6, "24hr": 45, "256": 51, "26": 80, "2665": 70, "268": 14, "27": [70, 80], "2749": 32, "2816": 38, "28938": 30, "28th": 27, "29": [70, 80], "2d": [24, 25, 43, 47, 63, 73], "2e": [40, 43], "2nd": [17, 32], "3": [8, 10, 11, 12, 14, 15, 16, 21, 22, 27, 32, 43, 44, 45, 46, 60, 61, 63, 68, 70, 73], "30": [12, 21, 75, 80], "300": [40, 43, 51, 75], "30am": 32, "32": [12, 51, 63], "3239": [56, 60, 68, 80], "3249": 80, "3251": 80, "3252": 80, "3253": 80, "3254": [68, 70, 80], "3255": 80, "3256": 80, "3257": [68, 70, 80], "3258": 80, "3259": 80, "3260": 80, "3261": 80, "3262": 80, "3263": 80, "3288": [68, 70], "33": 70, "3306": [76, 79], "3322": [79, 80], "3324": 79, "35": 70, "350": [30, 54], "359": 51, "360": 19, "37": 70, "390": 14, "3d": [3, 5, 17, 24, 25, 26, 27, 28, 29, 30, 39, 40, 43, 45, 47, 51, 54, 64], "3r": 45, "3rd": [24, 32], "4": [10, 14, 15, 16, 27, 40, 43, 46, 61, 68, 80], "40": [17, 70, 78], "400": [14, 45], "404": [21, 22], "42": 12, "43": 70, "44444": 70, "45pm": 32, "46": 45, "49": 32, "49286891": 70, "4d": [8, 25, 26, 27, 28, 29, 30, 54], "4th": [25, 32], "5": [10, 14, 15, 24, 34, 45, 51, 53, 70, 80], "50": [40, 69, 80], "500": 51, "50442139": 70, "510": 14, "53": 80, "561": 68, "582": 4, "5e": 15, "5m": 45, "5th": 28, "6": [10, 11, 12, 14, 44, 46, 50, 63, 80], "60": [21, 78], "600k": 43, "62819702": 70, "64": [51, 73], "640": 19, "7": [11, 12, 54, 73, 75, 80], "70": 7, "72778443": 70, "7284468": 70, "75": 61, "75861633": 70, "7th": [29, 30, 54], "8": [11, 62, 80], "81": 32, "810": 14, "85": 15, "870": 30, "88": 27, "888": [30, 65], "896": 65, "897": 65, "9": [15, 16, 19, 20, 48, 80], "90": [15, 27, 54, 70], "99614616": 70, "A": [5, 11, 17, 20, 26, 30, 35, 36, 47, 54, 65, 68, 70, 72, 80], "And": [18, 20, 21, 22, 25, 32, 35, 38, 41, 46, 48, 50], "As": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 22, 23, 26, 31, 32, 33, 36, 39, 41, 43, 45, 51, 52, 55, 56, 62, 63, 66, 69, 73, 74, 75, 76, 77, 78, 79, 80], "At": [4, 5, 8, 11, 26, 27, 39, 46, 53], "Be": [24, 25, 28, 29, 30, 54], "But": [18, 19, 21, 31, 32, 37, 42, 44, 46, 48, 68, 73], "By": [5, 7, 8, 35, 38, 45, 56, 62, 77, 79, 80], "For": [3, 5, 6, 7, 8, 10, 11, 12, 15, 16, 17, 18, 19, 20, 21, 24, 25, 28, 29, 30, 33, 40, 41, 45, 51, 54, 63, 72, 73, 74, 75, 77, 80], "IT": 48, "If": [3, 6, 16, 26, 29, 30, 34, 36, 37, 40, 47, 52, 54, 67, 73, 78], "In": [3, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 21, 24, 26, 29, 30, 31, 32, 35, 36, 37, 45, 47, 54, 55, 56, 58, 60, 61, 63, 65, 72, 73, 74, 75, 77, 78, 79, 80], "It": [5, 6, 17, 19, 20, 21, 25, 26, 28, 29, 30, 32, 33, 35, 37, 40, 45, 49, 54, 55, 60, 61, 63, 72, 74, 75, 77, 79, 80], "No": [4, 24, 37, 38, 47, 65], "Not": [30, 46, 54], "Of": 63, "On": [5, 26, 40, 53, 63, 69, 73, 74, 76, 78, 80], "One": [17, 19, 20, 21, 34, 43, 44, 47, 52, 70, 72, 74, 80], "That": [32, 55], "The": [3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 33, 34, 36, 37, 38, 39, 42, 43, 44, 45, 47, 50, 51, 53, 54, 55, 58, 59, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 74, 75, 76, 78, 79, 80], "Their": [72, 74, 76, 79], "Then": [18, 20, 21, 22, 46, 57], "There": [18, 19, 20, 21, 26, 72], "These": [5, 8, 10, 12, 13, 14, 16, 21, 30, 31, 32, 36, 40, 45, 47, 49, 51, 55, 60, 69, 72, 78, 79, 80], "To": [3, 5, 6, 7, 8, 10, 13, 15, 18, 19, 20, 21, 27, 30, 32, 47, 49, 54, 56, 60, 63, 67, 72, 73, 75, 77, 80], "Will": [20, 21], "With": [12, 16, 31, 56, 59, 60, 62, 68, 76], "_": [70, 77, 80], "__": 38, "__all__": 80, "__file__": 80, "__getattr__": 80, "__init__": 80, "__lazy_dir__": 80, "__name__": 80, "__str__": 21, "_perpendicular_directions_temp_": 53, "_static": [72, 80], "a100": 36, "aae": 77, "ab": 15, "abil": [63, 80], "abl": [5, 12, 15, 16, 24, 32, 40, 41, 46, 47, 49, 50, 51, 52, 55, 57, 62, 63, 64, 66, 67, 68, 70, 71, 73, 74, 75, 76, 79], "about": [3, 4, 5, 17, 18, 19, 21, 22, 23, 24, 25, 27, 28, 29, 30, 31, 33, 34, 35, 46, 54, 56, 58, 60, 61, 64, 66, 67, 68, 69, 70, 72, 73, 74, 75, 77, 78, 80], "abov": [11, 12, 14, 15, 36, 45], "absolut": [22, 32, 77], "academ": [31, 74], "acceler": [24, 25, 26, 28, 29, 54, 61], "accept": [63, 65, 78], "access": [16, 19, 30, 36, 45, 48, 52, 69, 72, 79, 80], "accommod": [48, 50, 54], "accomplish": [6, 7, 16, 47, 56, 74, 76], "accord": [6, 8, 11, 15, 16, 19, 41, 50, 56, 71, 73], "accordingli": [47, 48, 76], "account": [5, 6, 7, 36, 47, 48], "accumul": 40, "accur": [3, 5, 8, 14, 38, 54, 72, 76], "accuraci": 54, "achiev": [7, 8, 16, 18, 20, 23, 35, 36, 38, 40, 43, 45, 51, 53, 56, 62, 63, 73, 79, 80], "acquaint": [3, 17, 56], "acquir": [7, 12, 13, 30], "acquisit": [7, 30], "across": [24, 25, 26, 27, 28, 29, 30, 31, 35, 45, 51, 54, 57, 58, 60, 80], "action": [54, 72, 80], "activ": [21, 39, 53, 73], "actor": 17, "actual": [22, 32, 44, 46, 50, 53, 58, 61, 62, 66, 75, 80], "acut": 55, "ad": [5, 7, 8, 11, 12, 13, 16, 20, 21, 24, 25, 26, 27, 28, 29, 30, 37, 39, 49, 52, 53, 54, 63, 67, 69, 70, 71, 76, 79], "adam": [40, 43], "adapt": [16, 30, 61, 63, 64, 67, 72, 80], "add": [1, 4, 6, 11, 13, 17, 20, 21, 23, 24, 25, 28, 50, 70, 71, 80], "addit": [7, 8, 11, 17, 20, 23, 25, 27, 29, 30, 45, 54, 58, 60, 65, 72, 74, 75, 78], "addition": [3, 17, 24, 25, 26, 27, 28, 29, 30, 39, 45, 48, 51, 53, 54, 62, 72, 76, 80], "address": [6, 26, 33, 45, 57, 62, 63, 65, 72, 80], "adequ": 14, "adjac": 10, "adjust": [14, 15, 61, 65, 69, 72, 79, 80], "admin": [18, 19, 20, 21, 22], "admir": 78, "adopt": [26, 45, 54, 80], "adult": 30, "adv": 77, "advanc": [8, 16, 17, 25, 30, 37, 60, 69, 73], "advantag": [3, 24, 80], "adversari": [73, 75], "advic": 80, "advis": [38, 58, 67], "ae": [55, 61, 63, 67], "affect": [17, 55, 71, 79], "affin": [27, 29, 30, 54], "affine_transform": [43, 51], "after": [5, 8, 10, 11, 14, 15, 16, 17, 18, 19, 20, 21, 32, 41, 44, 45, 46, 47, 49, 50, 55, 59, 61, 62, 63, 68, 69, 72, 73, 75, 80], "afzali": 24, "ag": [17, 33, 55, 57, 64, 73, 77], "again": [14, 42, 44, 46, 48, 75, 76], "against": [64, 73, 75], "ageml": 55, "agenda": 33, "aggarw": [24, 30], "agre": [8, 55, 61], "ahead": [31, 45, 56, 58, 68, 72, 74, 76, 78], "ai": [10, 31], "aim": [12, 18, 27, 53, 54, 74, 76, 78, 80], "airport": 64, "ak": [8, 12, 13, 14], "al": [15, 16, 17], "ala": [40, 70], "alexandr": 17, "algorithm": [3, 5, 8, 11, 12, 14, 17, 21, 24, 71, 73, 80], "align": [5, 7, 10, 11, 15, 16, 25, 33, 62, 71, 73, 80], "all": [3, 4, 5, 6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 34, 35, 36, 37, 40, 42, 43, 44, 45, 46, 47, 48, 50, 51, 52, 53, 54, 55, 56, 57, 59, 60, 62, 63, 65, 67, 69, 70, 72, 74, 75, 76, 77, 78, 79, 80], "all_doc_displai": [20, 21], "all_doc_link": 21, "all_li": 22, "all_link": 22, "all_major_sect": 22, "all_minor_sect": 22, "all_versions_in_github": 21, "allclos": 50, "allow": [3, 4, 7, 8, 16, 17, 19, 20, 21, 24, 25, 28, 29, 30, 40, 54, 56, 57, 60, 65, 68, 71, 72, 73, 77, 80], "allowed_attr": [19, 21], "allowed_html_tag": [19, 21], "allowfullscreen": 19, "almost": [4, 12, 19, 20, 47, 53], "alon": [36, 45, 51], "along": [11, 19, 31, 35, 45, 64, 73, 79, 80], "alongsid": [43, 60], "alreadi": [3, 7, 8, 11, 12, 17, 19, 24, 25, 28, 29, 30, 32, 37, 38, 41, 42, 47, 49, 50, 51, 54, 63, 67, 70, 71, 76], "also": [1, 3, 4, 5, 6, 7, 8, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 29, 30, 32, 33, 34, 35, 36, 37, 38, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 61, 62, 63, 64, 65, 67, 68, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "altern": [5, 8, 45], "although": [15, 18, 20, 22, 26, 40, 41, 43, 45, 51, 78], "alwai": [5, 19, 32, 36, 46, 54, 74, 76, 78], "alzheim": 55, "am": [4, 6, 7, 8, 9, 10, 15, 16, 18, 19, 21, 31, 32, 55, 56, 57, 58, 61, 62, 63, 65, 67, 68, 69, 70, 72, 73, 75, 77, 79, 80], "amaz": [6, 13, 16, 18, 59, 63, 79], "among": [17, 28, 80], "amount": [14, 30, 76], "amplitud": 11, "an": [3, 4, 5, 6, 7, 8, 9, 11, 12, 15, 16, 17, 18, 19, 21, 22, 24, 25, 26, 27, 28, 29, 31, 32, 33, 35, 36, 39, 40, 41, 45, 46, 48, 50, 54, 55, 56, 57, 58, 63, 64, 65, 66, 67, 68, 70, 71, 72, 73, 74, 76, 77, 79, 80], "analys": [11, 16], "analysi": [3, 11, 12, 15, 17, 21, 24, 25, 26, 27, 28, 29, 33, 36, 54, 56, 80], "analyt": [8, 10, 15, 16, 18, 28], "analyz": [15, 44, 47, 51, 70], "anatom": [25, 28, 51], "anatomi": [3, 25, 26, 27, 28, 29, 30, 54], "andersson": 30, "angl": [10, 15, 27, 35, 46, 70], "angular": 7, "ani": [10, 17, 19, 20, 23, 26, 27, 30, 32, 36, 37, 40, 43, 51, 54, 56, 58, 59, 60, 62, 64, 65, 66, 71, 72, 73, 77, 80], "anim": [3, 26, 77], "anisotrop": [46, 47, 52], "anisotropi": [7, 8, 12, 13, 25, 28, 73], "anneal": 69, "announc": [21, 62, 72, 80], "annual": 6, "anoth": [18, 19, 21, 22, 32, 44, 51, 57, 58, 60, 72, 73, 74, 76, 78, 80], "answer": 36, "anterior": 51, "anthoni": [17, 24, 25, 28, 29, 30, 54], "anticip": 76, "anyhow": 43, "anymor": 50, "anyth": [18, 31, 72], "anywai": 77, "anywher": [19, 20, 47], "apart": 35, "api": [3, 19, 20, 21, 23, 30, 40, 80], "app": 21, "appar": [27, 49, 50, 80], "appear": [30, 50, 54], "append": [21, 22], "appli": [4, 7, 17, 24, 25, 28, 29, 30, 31, 54, 62, 63, 68, 70, 71, 74, 76, 78, 80], "applic": [3, 5, 17, 18, 24, 26, 30, 62, 68, 73, 75, 80], "appreci": 76, "approach": [7, 8, 11, 14, 26, 30, 34, 40, 41, 44, 65, 66, 67, 73, 80], "appropri": [34, 37, 41], "approv": 80, "approxim": [43, 61], "april": 18, "apt": 80, "ar": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 27, 32, 35, 36, 37, 39, 40, 41, 43, 44, 45, 46, 47, 50, 51, 53, 54, 55, 57, 58, 59, 62, 63, 64, 65, 67, 68, 70, 71, 72, 73, 74, 75, 76, 77, 78, 80], "arbitrari": 19, "architectur": [40, 43, 45, 48, 55, 63, 71, 75, 77], "archiv": [72, 80], "area": [30, 41, 56, 60, 76, 80], "areesha": 27, "areeshatariq02": 27, "arg": [19, 21, 70], "argu": 75, "argument": [21, 24, 49, 54, 68, 70, 74, 78], "ariel": [3, 6, 17, 24, 26, 27], "around": [11, 14, 31, 32, 43, 45, 63, 71], "arrai": [32, 57, 63, 70], "arrang": [5, 42], "arriv": 64, "art": [6, 8, 24, 25, 26, 28, 29, 30, 51, 54], "artefact": [11, 27], "artifact": [11, 13, 14, 16, 17, 43], "artifici": 7, "asap": 70, "ashburn": 30, "asid": [55, 63], "ask": [24, 25, 28, 29, 30, 36, 44, 48, 54, 70], "aspect": [35, 80], "assert": [50, 53], "asset": 80, "assign": [32, 48, 70], "assist": 60, "associ": 72, "assum": [7, 35, 63, 70], "assumpt": 30, "assur": [3, 17, 24], "async": 21, "attach": 80, "attach_stub": 80, "attempt": 52, "attend": 6, "attent": [27, 39, 72], "attentionblock": 39, "attract": [27, 55], "attribut": [21, 51, 72, 75, 77], "audio": 35, "auth": [18, 19], "authent": 19, "author": [35, 44, 45, 46, 64, 72, 73, 75], "auto": [21, 30, 35, 54], "auto_now_add": 21, "auto_tutori": 26, "autoencod": [55, 61, 63, 69, 73, 75], "autom": [20, 24, 54, 79, 80], "automat": [4, 5, 6, 8, 11, 14, 15, 16, 17, 18, 19, 20, 21, 22, 26, 46], "autoregress": [35, 36], "avail": [3, 12, 17, 24, 27, 28, 29, 30, 31, 54, 63], "averag": [11, 45], "avoid": [8, 11, 69], "awai": 45, "await": 68, "awesom": [4, 23, 32], "axcalib": 24, "axi": [7, 10, 11, 73], "axial": [7, 8, 11, 12, 13, 14, 47, 49, 50], "axon": [5, 16], "b": [3, 7, 14, 16, 17, 30, 45, 46, 47, 51], "b0s_mask": 70, "b1": 47, "b10": 51, "b12": 51, "b2": 47, "b5": 51, "back": [20, 21, 32, 58, 76, 77], "backend": [18, 21], "background": [8, 11, 14, 51], "background_mask": 14, "baggag": 64, "balanc": 74, "ball": 24, "bangalor": 32, "bar": 20, "barrier": 80, "base": [3, 5, 7, 8, 15, 17, 21, 24, 27, 29, 30, 33, 34, 36, 39, 40, 48, 51, 54, 58, 71, 72, 73, 77, 79, 80], "base_url": [20, 21, 22], "basi": [5, 7, 10], "basic": [3, 6, 7, 17, 20, 24, 25, 26, 27, 28, 29, 30, 32, 33, 39, 47, 49, 50, 54, 57, 64, 70, 71, 74, 75], "basqu": [55, 73], "batch": [40, 45, 51, 69], "batch_siz": [43, 45, 51], "batchnorm": 48, "battl": 32, "beauti": [3, 22], "beautifulsoup": 22, "becam": [63, 80], "becaus": [17, 18, 19, 34, 38, 42, 44, 46, 50, 51, 52, 57, 59, 61, 63, 64, 67, 69, 70, 71, 73, 75, 77], "becom": [31, 57], "been": [4, 7, 11, 17, 19, 21, 26, 27, 30, 32, 35, 36, 45, 46, 47, 48, 51, 54, 55, 56, 58, 60, 62, 64, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "befor": [7, 12, 13, 14, 16, 17, 18, 24, 25, 27, 28, 29, 30, 32, 33, 35, 40, 44, 45, 46, 53, 54], "began": 31, "begin": [32, 58, 66, 74, 80], "beginn": [24, 25, 28, 29, 30, 54, 74], "begun": [3, 19, 32, 58], "behav": [63, 67], "behavior": [56, 59, 63, 75, 80], "behind": [27, 34, 37, 67, 73, 76], "being": [11, 13, 14, 16, 27, 43, 44, 46, 49, 50, 51, 55, 63, 67, 68, 73, 80], "belong": [19, 73, 75, 77], "below": [5, 6, 7, 8, 9, 10, 11, 12, 14, 15, 16, 24, 36, 43, 45, 51, 63, 69, 70, 75, 77], "benchmark": [3, 17, 30, 54], "benefici": 54, "benefit": [3, 30, 62, 66, 72], "best": [18, 20, 22, 30, 32, 40, 43, 45, 51, 54, 75, 78, 80], "beta": 71, "better": [4, 5, 7, 15, 20, 21, 26, 29, 30, 42, 43, 45, 61, 72, 73, 75, 80], "between": [6, 7, 8, 10, 14, 15, 37, 38, 39, 43, 45, 63, 67, 73, 75, 77], "bia": 7, "bibtex": 19, "bibtexpars": 19, "big": [36, 40, 67, 69, 72], "bigger": [55, 71], "biggest": 70, "bihan": 17, "bind": 70, "biobizkaia": 55, "biolog": 5, "biomed": [30, 55], "biophys": [7, 8, 12, 16, 17, 30], "biospher": 73, "bit": [17, 18, 20, 32, 35, 37, 40, 42, 55, 59, 61, 63, 66, 67, 69, 71, 73, 74, 77, 78], "black": 43, "bleach": [19, 21], "blend": 74, "blob": 45, "block": [39, 43, 63, 72, 75, 80], "blog": [27, 32, 33, 35, 36, 40, 43, 48, 73, 75], "blogpost": 18, "blogspot": [72, 80], "bloomington": 48, "blue": [11, 15, 51], "blurri": [43, 51], "blurrier": [33, 43], "bn": 45, "bob": 17, "bodi": [19, 21, 22], "body_html": [19, 21], "body_markdown": [19, 21], "bond": [5, 6, 8, 58, 80], "bonu": 24, "book": [3, 17, 19, 24, 25, 28, 29, 30, 54], "boolean": [8, 70], "boost": [26, 54, 80], "bootstrap": 17, "both": [5, 7, 12, 14, 24, 26, 30, 40, 43, 45, 47, 60, 61, 62, 63, 72, 73, 74, 75, 76, 78, 80], "bottleneck": 54, "bouraima": 79, "boura\u00efma": 65, "brain": [3, 4, 7, 8, 11, 12, 13, 14, 16, 17, 24, 30, 33, 43, 45, 51, 55], "bramsh": [25, 28, 29], "branch": [6, 18, 20, 21, 32, 62], "brat": 45, "break": [74, 77, 80], "breakthrough": 36, "breez": 32, "brett": 3, "brief": 56, "briefli": 55, "bring": [24, 25, 26, 28, 29, 30, 32, 44, 54, 57, 62], "broad": 21, "broadcast": 32, "broader": 56, "broken": [50, 61], "brows": [72, 80], "browser": 40, "brunch": 5, "brush": 35, "bs_doc": 22, "bsc": 55, "bten": 32, "btensor": [32, 37], "bug": [16, 21, 54, 58, 66, 80], "bugfix": [24, 25, 28, 29, 30, 54], "build": [18, 20, 21, 24, 27, 32, 58, 60, 66, 74, 78, 79, 80], "built": [18, 21, 22, 24, 26, 72], "bunch": [32, 36, 38], "bundl": [25, 29, 61, 73, 75, 77], "bundle_1_fib": 73, "bundle_2_fib": 73, "busi": 61, "busier": 74, "button": [17, 21], "bval": [32, 49], "bvec": [32, 49], "bypass": 35, "c": [29, 30, 44, 54], "ca": 73, "cach": [20, 80], "cache_pag": 21, "calcul": [44, 45, 47, 50, 53], "calgari": 51, "call": [7, 14, 17, 18, 19, 21, 24, 31, 32, 45, 47, 49, 57, 59, 63, 67, 70, 73, 79, 80], "callabl": 70, "callosum": [5, 12, 16], "calm": 32, "cambridg": 4, "came": [31, 44, 74, 78], "campina": 51, "can": [1, 3, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 32, 36, 37, 38, 40, 43, 44, 45, 47, 50, 53, 54, 56, 58, 59, 61, 62, 63, 64, 67, 68, 69, 70, 71, 73, 74, 75, 77, 78, 79, 80], "canada": 30, "candid": [24, 25, 28, 29, 30, 54], "cannot": [4, 5], "capabl": [24, 27, 33, 35, 43, 51, 54, 60, 62, 63], "capac": 28, "captur": [32, 35, 37, 43, 45, 51, 63, 69, 73, 75], "card": 21, "care": [11, 19, 40, 50, 57, 61, 70, 74, 79], "career": 31, "carefulli": [65, 72, 79], "carlson": 8, "carous": 20, "carousel": 21, "carri": [7, 33, 43, 45, 51, 55], "case": [3, 5, 11, 15, 17, 37, 44, 46, 47, 50, 52, 53, 54, 60, 63, 64, 73, 75, 77], "cat": [73, 77], "categor": [35, 36, 73, 75, 77], "categori": [30, 54, 72, 77, 80], "caus": [6, 11, 14, 45, 59, 67, 72, 78], "cc": 51, "cc359": 51, "ccti": [44, 46, 47], "cd": 80, "cellular": 7, "cenir": [12, 13, 14], "center": 61, "central": [72, 80], "certain": 49, "cgan": 73, "chalk": 33, "challeng": [18, 24, 26, 41, 58, 63, 75, 76, 77, 78, 79], "chanc": 56, "chandio": [25, 28, 29, 30], "chang": [4, 6, 19, 20, 21, 22, 23, 26, 30, 38, 39, 41, 42, 45, 46, 47, 48, 49, 50, 53, 56, 58, 60, 65, 69, 72, 74, 76, 78, 80], "channel": [24, 25, 26, 28, 29, 30, 40, 45, 51, 54, 56, 63], "chaotic": [72, 80], "chapter": 19, "character": [5, 34], "characterist": [67, 69, 75], "charfield": 21, "charm": [17, 24], "chart": 23, "chat": [26, 56], "check": [15, 16, 19, 20, 21, 24, 30, 32, 35, 44, 48, 51, 54, 55, 63, 65, 68, 72, 73, 75, 77, 79], "checkerboard": 43, "checkout": [1, 6], "checkpoint": 45, "chigurupati": [30, 54], "choic": 77, "chose": 73, "chosen": 77, "christoph": 17, "ci": [58, 62, 65, 70, 80], "cifar": 35, "cifar10": 39, "circumfer": 10, "cite": 19, "cl": 50, "clarif": [70, 75], "clariti": [54, 80], "class": [7, 8, 19, 21, 26, 38, 41, 46, 47, 49, 56, 57, 67, 70, 77], "class_": 22, "classic": 17, "classif": 80, "classifi": 3, "claus": 70, "clean": [19, 20, 21, 29, 53, 56, 59, 77, 80], "cleanup": 18, "clear": [21, 60, 72, 75, 79, 80], "clearer": 80, "clearli": 45, "cleaver": 11, "cli": [26, 30], "click": [20, 32], "clinic": [5, 30, 55], "clip": 69, "close": [17, 26, 38, 51, 63, 68, 73, 77], "closer": [44, 62], "closest": [27, 36, 37], "cloud": 17, "cls_fit_cti": 47, "club": 18, "cluster": [21, 24, 48, 55, 61, 73, 75, 77], "cm": 20, "cnn": 25, "co": 25, "code": [5, 7, 8, 11, 13, 15, 16, 26, 27, 32, 34, 35, 36, 39, 40, 42, 43, 44, 46, 48, 51, 53, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 77], "codebas": [24, 25, 26, 28, 29, 30, 32, 39, 40, 43, 53, 56, 58, 60, 62, 74, 76, 79, 80], "codehilit": [19, 21], "codespel": 58, "collabor": [6, 16, 52, 58, 79, 80], "collaps": [33, 35, 36], "collat": [35, 39], "colleagu": [8, 11, 69], "collect": [47, 72], "colleg": [18, 31, 32], "color": [35, 73], "colormap": 16, "column": 45, "com": [17, 19, 20, 21, 27, 38], "combin": [5, 17, 24, 28, 32, 36, 46, 51], "come": [19, 20, 30, 58, 74, 78, 79], "comfort": [27, 30, 31, 54], "command": [5, 11, 14, 18, 20, 24, 25, 26, 28, 29, 40, 80], "comment": [16, 26, 53, 62], "commit": [18, 20, 32, 54, 74], "common": [17, 29, 30, 43, 63, 73, 80], "common_fit_method": 50, "commun": [5, 6, 8, 16, 24, 25, 26, 27, 62, 68, 70, 72, 74, 76, 78, 79, 80], "compar": [12, 13, 14, 15, 29, 30, 41, 45, 50, 51, 54, 61, 63, 73, 75], "comparison": [7, 15, 30, 51], "compart": [7, 24, 34], "compartment": 7, "compat": [7, 12, 30, 79, 80], "compel": [3, 17], "competit": [31, 32], "compil": [6, 19, 30, 40, 54, 57], "complet": [3, 4, 7, 8, 11, 19, 21, 26, 27, 32, 37, 39, 41, 44, 45, 53, 62, 68, 70, 75, 78], "complex": [8, 36, 37, 43, 45, 49, 50, 51, 54, 71, 72, 76], "compli": [41, 62], "compon": [7, 17, 24, 30, 34, 38, 43, 45, 47, 54, 71, 78, 80], "comprehens": [17, 24, 25, 28, 29, 30, 54, 58, 66, 80], "compress": [36, 67], "compris": 34, "compromis": 71, "comput": [4, 5, 6, 7, 8, 10, 11, 12, 14, 15, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 49, 54, 55, 67, 69, 75, 77], "computation": [8, 11], "concaten": [32, 39, 63, 77], "concept": [26, 27, 32, 45, 62, 69, 74, 80], "concern": [60, 62, 63, 80], "conclud": 54, "conclus": [35, 44], "concret": [8, 12, 16], "cond1": 15, "condit": [30, 36, 39, 63, 67, 71, 77, 80], "conduct": [33, 35, 40, 53, 66, 72, 80], "confer": [8, 19], "confid": [30, 31, 54, 74], "configur": [48, 74, 76, 78, 79, 80], "confirm": [32, 72], "conflict": [6, 78], "congrat": 4, "congratul": 32, "connect": [4, 12, 17, 25, 40, 55, 56, 63, 64, 69], "connectom": [3, 12, 13, 16, 17], "consequ": [13, 45, 50], "consid": [7, 8, 13, 15, 17, 24, 25, 26, 28, 29, 30, 47, 54], "consider": [42, 44, 46, 47, 49, 50], "consist": [8, 26, 39, 51, 57, 63, 69, 72, 80], "consolid": [72, 80], "constant": [14, 20, 27, 75], "constantli": 67, "constitut": 39, "constrain": [27, 69, 71], "construct": [10, 37, 49], "consum": [41, 72, 76], "contact": [17, 29, 30, 44, 46, 54], "contain": [8, 16, 19, 21, 22, 24, 25, 26, 27, 28, 29, 30, 33, 54, 61, 74, 79, 80], "container": [74, 79], "contamin": 70, "content": [18, 19, 21, 22, 26, 72, 80], "context": [20, 21, 31, 37, 55, 72, 74], "context_processor": 20, "continu": [6, 16, 17, 18, 24, 25, 27, 28, 29, 30, 36, 40, 51, 54, 55, 56, 64, 67, 71, 73, 75, 77, 80], "contrast": [30, 45], "contribut": [3, 11, 16, 17, 18, 23, 24, 25, 26, 27, 28, 29, 30, 32, 45, 54, 55, 56, 57, 72, 78, 79, 80], "contributor": [5, 21, 54, 55, 58, 60, 72, 79, 80], "control": [32, 64, 75], "conv": 40, "conv1d": 61, "conv2d": 39, "conveni": [59, 75], "convent": [30, 51, 63], "converg": [45, 51, 59], "convers": [25, 26, 37, 44, 46, 49], "convert": [7, 11, 19, 25, 50, 72], "convert_positional_to_keyword": 70, "convinc": [43, 51], "convolut": [35, 36, 39, 43, 45, 59, 63, 64, 69], "cook": 75, "cool": 20, "coordin": [7, 10, 25, 28, 29, 70], "copi": 23, "core": [10, 21, 26, 80], "coron": 30, "corpu": [5, 12, 16], "correct": [3, 6, 13, 15, 16, 17, 21, 38, 42, 44, 46, 47, 60, 67, 68, 70, 75], "correctli": [36, 42, 44, 47, 55, 62, 70, 72, 74, 75, 76, 78], "correl": [3, 73], "correspond": [7, 11, 19, 51, 54, 72], "corrupt": [9, 11], "cote": 30, "could": [4, 11, 18, 31, 32, 34, 37, 44, 46, 47, 48, 49, 50, 51, 55, 62, 64, 66, 67, 69, 71, 75], "couldn": [32, 39, 48, 50], "countri": [24, 25, 26, 28, 29, 30, 54, 55, 73], "coupl": [3, 7, 8, 12, 16, 23, 31, 32, 35, 39, 43, 57], "courag": 31, "cours": [17, 21, 32, 63, 74], "coursera": 32, "covari": [41, 42, 44, 46, 47, 50, 52], "cover": [5, 16, 80], "coverag": [5, 53], "cpu": [30, 48, 54], "craft": 78, "crazi": 63, "creat": [3, 4, 6, 11, 12, 16, 17, 20, 21, 23, 24, 25, 27, 28, 31, 32, 34, 37, 41, 44, 46, 49, 50, 52, 53, 55, 72, 74, 76, 79, 80], "createel": 21, "creation": [74, 80], "creativ": 3, "criteria": 15, "critic": [32, 56, 80], "cross": [3, 5, 7, 10, 11, 15, 16, 24, 26, 51, 80], "crucial": [38, 56, 58, 62, 72, 76, 78, 79, 80], "csa": 27, "csd": 27, "css": 23, "ct": 55, "cti": [32, 34, 38, 41, 42, 46, 47, 49, 50, 53], "cti_design_matrix": 44, "cti_param": 50, "cti_pr": 41, "cti_pred_sign": 47, "cti_return": 50, "cti_test": [37, 38], "cuda": [29, 30], "cudipi": [29, 30, 54], "cultur": 56, "cumul": 34, "curiou": [32, 67], "current": [3, 4, 5, 6, 7, 9, 11, 16, 17, 20, 21, 24, 26, 29, 30, 31, 32, 39, 40, 43, 44, 51, 52, 53, 54, 56, 62, 72, 75], "curv": [32, 43, 45, 51, 74], "curvatur": 45, "custom": [18, 19, 20, 21, 40, 59, 61, 63, 74], "cut": [29, 32], "cvae": [73, 75], "cvt": 53, "cwl": 50, "cyber": 55, "cylind": 24, "cython": [11, 16, 17, 24, 25, 29, 30, 54, 70], "c\u00f4t\u00e9": 17, "d": [20, 21, 26, 30, 32, 42, 44, 50, 77], "d3": 75, "d3j": 18, "d4": 75, "d_a": 77, "d_flat": 44, "d_r": 77, "dai": [6, 19, 36, 39, 64, 70, 74, 78, 79], "dashboard": [20, 32, 52], "data": [3, 8, 11, 12, 13, 14, 16, 17, 18, 21, 23, 24, 25, 26, 27, 28, 29, 33, 35, 36, 37, 45, 47, 49, 50, 51, 52, 53, 54, 55, 57, 64, 67, 69, 70, 71, 73, 75, 77, 80], "databas": [20, 21], "datagener": 48, "dataload": 48, "dataset": [3, 5, 7, 8, 9, 11, 12, 13, 14, 16, 17, 24, 27, 30, 31, 33, 35, 40, 45, 55, 57, 61, 63, 71, 73, 75, 80], "dataset_us": 51, "date": [19, 20, 21, 76, 79, 80], "datetim": [19, 21], "datetimefield": 21, "david": 24, "dayananda": 32, "dde": 34, "ddim": 39, "ddpm": [36, 39, 51], "deal": [45, 72], "debug": [4, 5, 6, 16, 48, 51, 69], "decai": [46, 61], "decemb": 27, "decent": [19, 71, 73], "decid": [8, 11, 13, 14, 16, 31, 40, 42, 43, 44, 45, 46, 47, 50, 62, 63, 64, 73, 75], "decis": [17, 47, 67], "decod": [35, 36, 45, 57, 59, 63, 67, 75, 77], "decompos": 50, "decompose_tensor": 44, "decomposit": [6, 50], "deconvolut": [27, 45], "decor": [21, 50, 80], "decreas": [39, 61, 69, 80], "dedic": [8, 16, 22, 26, 48, 60, 65, 72, 80], "deep": [25, 31, 33, 45, 59, 75, 76], "deeper": [38, 53, 56, 74], "deeplearn": 48, "def": [19, 20, 21, 22, 70, 80], "default": [4, 14, 21, 24, 27, 40], "default_descript": 21, "default_keyword": 21, "default_logo_url": 21, "default_titl": 21, "defin": [10, 11, 35, 48, 55, 75], "definit": [4, 16, 31, 48, 51], "deform": 25, "degre": [7, 15, 32, 54], "deka": 80, "delai": [58, 62, 64, 80], "delet": 21, "delic": 74, "deliv": [35, 36, 45, 51, 64], "demand": [7, 8, 11, 73, 74, 80], "demo": [26, 80], "demonstr": [3, 17], "denois": [13, 14, 17, 21, 24, 27, 36, 39, 40, 54, 80], "dens": [24, 59, 61], "densiti": 5, "depend": [7, 11, 14, 16, 17, 45, 55, 56, 73, 74, 76, 78, 79, 80], "depict": 45, "deploi": 26, "deploy": [18, 20, 80], "depth": [38, 61, 63], "deriv": [5, 16, 49, 50, 73, 75], "describ": [5, 8, 11, 12, 15, 16, 17, 26, 40, 61, 69], "descript": [3, 11, 17, 21, 22, 24, 25, 26, 28, 29, 30, 42, 54], "design": [18, 19, 21, 27, 28, 37, 40, 42, 46, 58, 59, 80], "design_matrix": 70, "desir": [38, 39, 43, 45, 52, 63, 64, 73, 75], "despit": [12, 13, 14, 26, 48, 51, 63, 69, 76, 78], "destin": 64, "detail": [3, 4, 5, 6, 7, 8, 11, 12, 13, 15, 16, 17, 24, 25, 28, 29, 30, 35, 36, 37, 40, 50, 51, 54, 71, 72], "detect": [3, 11, 14, 15, 16, 17, 79], "determin": [18, 19, 49], "determinist": [24, 27, 36], "dev": [55, 80], "devel": 26, "develop": [3, 6, 8, 14, 15, 16, 17, 18, 20, 21, 23, 24, 25, 28, 29, 30, 31, 54, 55, 56, 63, 66, 72, 74, 76, 79, 80], "deviat": [7, 11, 14, 69], "devic": 21, "devis": 61, "di": 10, "diag": 6, "diagram": 75, "dictionari": 21, "didn": [32, 34, 37, 38, 42, 44, 45, 46, 47, 49, 51, 52, 60, 66, 70, 72], "diffeomorph": [25, 27], "differ": [5, 6, 7, 11, 14, 15, 17, 18, 19, 20, 24, 25, 28, 29, 30, 32, 34, 35, 38, 41, 43, 45, 46, 47, 49, 50, 51, 53, 54, 59, 63, 65, 66, 67, 72, 73, 78, 80], "differenti": 46, "difficult": [36, 72], "difficulti": [3, 17, 24, 25, 28, 29, 30, 54], "diffus": [3, 5, 7, 8, 9, 15, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 35, 37, 40, 42, 44, 45, 46, 49, 50, 51, 52, 53, 55], "dig": 35, "digit": [25, 40], "dimens": [39, 45, 51, 63, 71, 73, 77], "dimension": [61, 75], "dimensionless": 11, "dipc": [55, 61], "dipi": [1, 3, 4, 5, 6, 8, 10, 11, 12, 14, 16, 19, 20, 21, 22, 23, 31, 32, 38, 43, 45, 47, 51, 57, 59, 61], "dipy_data": 27, "dipy_horizon": [25, 28, 29], "dipy_web": [19, 20, 21, 27], "dir": [20, 21, 80], "direct": [3, 5, 7, 8, 15, 17, 19, 32, 50, 80], "directli": [10, 11, 13, 17, 24, 25, 28, 29, 30, 32, 50, 54, 67], "directori": [40, 72], "dirti": 32, "discontinu": 15, "discord": 26, "discov": [59, 72], "discret": [33, 35, 47], "discrimin": [73, 77], "discuss": [4, 6, 8, 11, 18, 26, 30, 35, 36, 39, 54, 56, 58, 69, 73, 75], "diseas": [17, 55], "disentangl": 71, "dispers": 11, "displai": [19, 20, 21, 22, 45, 72], "disrupt": 66, "distanc": [36, 77], "distinct": 73, "distinguish": 77, "distract": 32, "distribut": [3, 11, 16, 25, 28, 33, 35, 36, 40, 44, 45, 67, 69, 77], "distributionlambda": 36, "distributionstrategi": 48, "distrubutionallambda": 35, "div": [19, 22], "dive": [32, 56, 66, 74], "diverg": 67, "divid": [40, 42, 46], "divis": 46, "django": [17, 18, 19, 20, 21, 26], "dki": [3, 5, 6, 8, 13, 14, 17, 25, 27, 37, 41, 46, 47], "dki_test": 44, "dm": [40, 43], "dm3d": 51, "dmri": [3, 21, 24, 25, 27, 28, 29, 30], "do": [3, 6, 17, 19, 21, 26, 32, 36, 38, 44, 45, 46, 52, 57, 62, 63, 67, 70, 73, 74, 75, 77, 78], "doc": [17, 20, 21, 22, 27, 32, 72, 80], "doc_exampl": 22, "docker": [55, 72, 76, 79], "dockerfil": [55, 74, 80], "docstr": [54, 62, 80], "doctor": 26, "document": [8, 17, 18, 20, 22, 24, 25, 28, 29, 30, 34, 37, 40, 49, 51, 53, 54, 56, 58, 61, 68, 70, 72, 74, 76, 80], "documentation_pag": 21, "documentation_repo_nam": [20, 21, 22], "documentation_repo_own": [20, 21, 22], "documentationlink": [20, 21, 22], "doe": [11, 24, 25, 28, 29, 30, 35, 40, 43, 54, 59, 67, 73, 74, 75], "doesn": [35, 37, 66], "dog": 73, "doi": 30, "domain": 77, "don": [42, 43, 44, 45, 61, 71], "done": [3, 4, 5, 6, 7, 8, 10, 11, 12, 14, 15, 16, 19, 21, 22, 30, 32, 35, 41, 42, 44, 46, 48, 51, 52, 54, 67, 69, 76, 78, 79], "donostia": 61, "dorsal": 51, "dot": [6, 24], "doubl": [30, 48], "doubt": 70, "dougherti": 17, "down": [31, 32, 50, 70, 74, 77], "downgrad": 48, "download": 53, "downsampl": [36, 39, 43, 45], "dr": [6, 78], "draft": [50, 74, 76, 77], "dramat": [12, 16], "drastic": [40, 73], "draw": [23, 35, 80], "dream": 78, "dreamt": 18, "drive": [3, 62, 68, 70, 72], "driven": 26, "dromba": 55, "drop": [32, 67], "dropdown": 21, "dry": 20, "dt": 7, "dtd": [46, 47, 52, 53], "dti": [3, 5, 7, 11, 12, 13, 17, 25, 27, 37, 70, 73], "due": [8, 11, 27, 32, 36, 39, 50, 53, 54, 62, 73, 75, 78], "duplic": 8, "dure": [4, 5, 6, 8, 11, 15, 16, 24, 25, 27, 28, 29, 30, 31, 32, 36, 54, 55, 56, 58, 69, 75, 76, 79, 80], "dw": 7, "dwi": 3, "dxx": 44, "dyi": 44, "dynam": [17, 20, 22, 26, 80], "dzz": 44, "e": [3, 7, 8, 10, 11, 15, 17, 25, 30, 32, 36, 40, 43, 51, 54, 67, 70, 77], "each": [3, 5, 7, 8, 10, 15, 16, 19, 22, 39, 40, 45, 46, 47, 51, 63, 65, 69, 72, 73, 75, 80], "eager": [56, 72, 74], "eagerli": 78, "earli": [18, 26, 33, 52, 73], "earlier": [36, 48, 66, 74, 76, 78], "earliest": 66, "eas": [56, 57, 80], "easi": [11, 21, 24, 25, 26, 27, 32, 44, 59, 61, 67, 73, 79, 80], "easier": [27, 49, 69, 72, 73, 75, 78, 80], "easiest": 63, "easili": [11, 21, 23, 29, 30, 54, 72, 74, 80], "echo": 30, "ecosystem": 54, "eddi": 17, "edit": [19, 20, 21, 22, 27, 46, 55], "editor": [19, 20], "educ": [26, 80], "effect": [3, 17, 24, 25, 28, 29, 30, 35, 36, 40, 43, 45, 54, 60, 63, 71, 74, 75, 80], "efficaci": 36, "effici": [17, 45, 54, 56, 57, 58, 59, 62, 80], "effort": [24, 37, 40, 41, 54, 60, 63, 72, 78, 80], "eigen": [42, 50], "eigenvalu": [6, 15, 42, 44, 53], "eigenvalue1": 6, "eigenvalue2": 6, "eigenvalue3": 6, "eigenvector": [6, 44, 50], "eigenvector1": 6, "eigenvector2": 6, "eigenvector3": 6, "eighth": 72, "either": [37, 48], "eleftherio": [3, 8, 17, 24, 25, 26, 27, 78], "element": [5, 7, 11, 40, 42, 44, 45, 46, 47, 50, 52, 53, 63, 72, 80], "elev": 54, "elimin": [52, 65, 70], "ellipsoid": 5, "ellipt": 8, "elorriaga": [55, 79], "els": [19, 22, 46, 70], "em": [29, 30], "email": [18, 19, 32], "emb": 19, "embed": [19, 35, 45, 72], "emploi": 80, "enabl": [3, 21, 24, 25, 28, 29, 80], "encapsul": 67, "encod": [30, 34, 35, 36, 37, 43, 45, 51, 57, 59, 63, 67, 69, 73, 77], "encount": [49, 72, 79, 80], "encourag": [55, 71, 74, 76, 80], "end": [5, 12, 15, 16, 22, 23, 32, 33, 35, 40, 46, 48, 50, 58, 79], "energi": [32, 76], "enforc": [56, 69], "engag": [26, 27, 72, 80], "engin": [20, 24, 32, 55], "enhanc": [17, 18, 24, 25, 26, 28, 29, 30, 54, 58, 60, 62, 65, 68, 70, 80], "enjoi": 31, "enlighten": 63, "enough": [55, 63, 73, 77], "enrich": [56, 65], "ensur": [16, 46, 47, 49, 53, 54, 56, 58, 60, 62, 65, 66, 72, 74, 76, 77, 78, 79, 80], "enter": [19, 22], "entir": [33, 37, 53, 72], "entri": 80, "environ": [17, 18, 40, 55, 56, 74, 78, 79, 80], "ep": 15, "epoch": [40, 43, 59, 69, 71, 73], "epsilon": [15, 69], "eq": 10, "equal": [11, 15, 51, 60, 74], "equat": [10, 54, 71], "equival": [36, 45], "er": 15, "eric": 17, "erron": 51, "error": [4, 6, 40, 50, 51, 53, 56, 62, 63, 65, 68, 70, 71, 74, 75, 77, 80], "especi": [19, 24, 74, 76, 80], "essenti": [6, 37, 74, 80], "establish": [7, 8], "estim": [3, 5, 7, 8, 10, 13, 14, 15, 17, 30, 35, 36, 37], "et": [15, 16, 17], "etc": [3, 20, 21, 24, 25, 28, 29, 30, 32, 35, 40, 49, 53, 54, 73], "eudx": 27, "eval": [42, 44, 50, 53], "evalu": [6, 7, 10, 11, 16, 21, 40], "evec": [42, 44], "even": [11, 21, 32, 47, 51, 52, 63, 64, 70, 73, 76], "evenli": 11, "event": [1, 20], "eventu": [40, 48], "everi": [18, 19, 20, 21, 26, 36, 45, 49, 51, 53, 75], "everyon": [4, 55, 56, 58, 60, 62, 64, 65, 66, 68, 70, 72, 74, 76, 78, 79], "everyth": [20, 24, 47, 52, 53], "evid": 30, "exact": [11, 69], "exactli": [11, 32, 38, 42, 46, 47, 49], "examin": [50, 53], "exampl": [3, 5, 6, 7, 8, 11, 12, 14, 15, 16, 17, 22, 24, 26, 29, 30, 40, 47, 54, 56, 60, 67, 73, 74, 76, 80], "example_bs_doc": 22, "example_dict": 22, "example_json": 22, "example_respons": 22, "example_titl": 22, "example_url": 22, "examples_built": 22, "examples_div": 22, "examples_index": [17, 22], "examples_list": 22, "excel": 17, "except": [20, 21, 45, 63], "excess": 67, "exchang": 19, "excit": [4, 8, 17, 32, 55, 56, 58, 60, 63, 66, 74, 78, 79], "exclud": [11, 20, 40, 45], "execut": [3, 17, 24, 79, 80], "exhaust": 76, "exist": [3, 24, 28, 29, 30, 32, 33, 37, 45, 51, 54, 56, 62, 66, 72, 80], "exit": 4, "exp": 19, "expand": [3, 11, 22], "expans": [11, 34, 58], "expect": [5, 6, 7, 8, 13, 14, 17, 24, 25, 28, 29, 30, 32, 38, 42, 44, 46, 47, 49, 50, 54, 56, 59, 63, 66, 67, 80], "experi": [16, 17, 26, 27, 28, 30, 32, 33, 35, 36, 39, 43, 45, 47, 48, 54, 55, 56, 59, 61, 65, 71, 72, 74, 75, 77, 79, 80], "experienc": 80, "expert": [5, 6, 11, 53], "expertis": [3, 17, 24, 25, 26, 28, 29, 30, 54, 69], "explain": 26, "explan": [26, 45, 60, 67, 80], "explicit": 80, "explicitli": 80, "explod": [67, 69], "exploit": 27, "explor": [4, 16, 17, 31, 32, 33, 36, 63, 67, 69, 72, 74, 80], "exploratori": 33, "expon": 67, "exponenti": [67, 69], "expos": [26, 27], "express": [11, 34], "extend": [17, 21, 24, 30, 43], "extens": [7, 17, 19, 21, 26, 41, 49, 80], "extent": 8, "extern": [17, 70, 72], "extra": [7, 16, 17, 30, 36, 50, 53, 54, 68], "extract": [11, 12, 17, 19, 22, 26, 28, 33, 36], "extrem": [15, 24], "ey": 51, "f": [6, 43], "fa": [7, 8, 12, 13, 25, 28], "face": [4, 60, 62, 65, 66, 70, 75, 79], "facebook": [20, 21], "facil": [25, 28, 29], "facilit": [8, 26, 35, 79, 80], "fact": [5, 11, 18, 34, 36, 50, 52], "factor": [40, 43, 44, 46, 47, 49, 50, 53], "fadnavi": [25, 28, 29, 30], "fail": [6, 53], "failur": [4, 78], "fairli": 73, "fallback": 21, "fals": [19, 21, 22], "familiar": [16, 17, 18, 24, 25, 28, 29, 30, 33, 54, 55, 57, 77], "fanci": 32, "far": [4, 5, 8, 11, 45], "fashion": 57, "fast": [24, 30, 32, 75], "faster": [8, 11, 36, 45, 51, 54, 80], "fc1": 63, "feasibl": [11, 63], "featur": [8, 11, 17, 18, 26, 29, 32, 47, 54, 55, 56, 63, 68, 70, 71, 73, 80], "feed": [20, 21, 57, 63], "feedback": [6, 8, 19, 53, 54, 58, 69, 72, 74, 80], "feel": [18, 30, 32, 54], "fell": 66, "fellow": [66, 79], "fellowship": [17, 24, 25, 28, 29, 30, 54], "felt": [32, 46, 49], "fetch": [19, 21, 22, 27], "fetcher": 53, "few": [17, 26, 27, 31, 32, 43, 44, 70, 74], "fewer": 19, "fiber": [5, 7, 8, 15, 27, 73, 75, 77], "fibercup": [55, 57, 59, 63, 71, 73, 75], "fibrosi": 17, "fid": 40, "field": [6, 24, 25, 26, 28, 29, 30, 31, 54, 55, 78], "fiereman": [16, 17], "fifth": 66, "fig": [9, 10], "fight": 77, "figur": [5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 24, 32, 42, 44, 46, 47, 50, 52, 63, 68, 69, 75, 77], "file": [6, 28, 29, 34, 37, 38, 46, 47, 48, 49, 53, 61, 62, 63, 70, 72, 80], "filedialogu": 17, "fill": [66, 79], "filter": [19, 20, 21, 22, 24, 27, 28, 31, 45, 61, 75], "final": [6, 7, 8, 10, 11, 12, 14, 17, 18, 23, 36, 39, 40, 52, 59, 63, 69, 77], "find": [6, 11, 16, 22, 26, 32, 35, 36, 39, 65, 66, 67, 71, 72, 75, 78, 80], "find_al": 22, "findal": 19, "finfo": 15, "finish": [5, 12, 16, 26, 34, 37, 50, 52, 53, 55, 57, 59, 70, 78], "finta": 61, "fire": 32, "firefox": 40, "first": [3, 5, 7, 9, 10, 12, 14, 15, 16, 17, 18, 26, 31, 32, 33, 35, 36, 42, 43, 45, 48, 51, 56, 58, 62, 63, 67, 69, 74], "firstli": [31, 50], "fit": [8, 11, 13, 16, 17, 24, 31, 38, 40, 41, 47, 49, 50, 57, 70], "fit_method": 70, "fix": [4, 20, 21, 24, 25, 28, 29, 30, 46, 47, 50, 53, 54, 56, 58, 62, 74, 75, 80], "fjson": [21, 22], "flag": 65, "flatten": 63, "flexibl": [20, 26, 80], "flight": 64, "float": 50, "focu": [17, 19, 24, 29, 30, 31, 45, 49, 53, 54, 56, 59, 63, 75, 76, 80], "focus": [21, 32, 41, 71, 74, 75, 78, 79, 80], "folder": [17, 23, 72], "folk": 32, "follow": [4, 5, 6, 8, 10, 11, 14, 15, 16, 24, 26, 27, 32, 38, 39, 40, 43, 44, 45, 51, 53, 54, 56, 61, 63, 67, 72, 75, 78, 80], "food": 75, "fool": [73, 77], "footprint": [62, 80], "forc": 77, "forefront": 54, "foreground": 51, "fork": [6, 55], "form": [19, 73], "format": [7, 21, 22, 25, 28, 29, 41, 44, 46, 56, 57, 61, 62, 72], "former": 45, "formula": [11, 15, 32, 47, 51], "fortun": [6, 11, 31], "forum": [30, 54, 56], "forward": [31, 32, 36, 40, 43, 46, 49, 56, 58, 62, 68, 70, 72, 74, 76, 78, 79, 80], "fought": 77, "found": [7, 8, 12, 16, 18, 19, 21, 24, 25, 26, 28, 29, 34, 59, 63, 64, 67, 73, 74, 75, 77, 80], "foundat": [18, 24, 32, 58, 60, 74, 80], "four": [7, 11], "fourth": [8, 34, 65], "fraction": [7, 8, 12, 13, 16, 46, 70, 73], "fragment": 24, "frame": 10, "framebord": 19, "framework": [3, 8, 16, 24, 25, 27, 28, 29, 30, 54, 73, 75, 77], "frank": 18, "free": [21, 24, 25, 26, 28, 29, 30, 54, 70], "freedom": 54, "freeli": 59, "freewatertensormodel": 70, "frequent": 18, "friendli": [24, 25, 27, 28, 29, 30, 40, 54, 72, 80], "from": [3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 35, 36, 38, 39, 40, 45, 46, 47, 48, 49, 50, 51, 54, 55, 56, 57, 58, 59, 60, 61, 63, 64, 65, 66, 67, 69, 70, 71, 72, 73, 74, 75, 77, 78, 79, 80], "from_3x3_to_6x1": [44, 50], "from_a_6x6_to_21x1": 49, "from_lower_triangular": [11, 44], "from_qte_to_cti": 53, "front": [31, 74, 76, 78], "frontend": 19, "fruit": 70, "full": [12, 15, 17, 21, 29, 30, 54, 55, 66, 67, 73, 74, 80], "fulli": [58, 63, 69, 78, 79], "fun": [3, 32, 70], "func": 70, "function": [3, 6, 8, 16, 18, 21, 25, 26, 28, 29, 30, 32, 33, 38, 40, 42, 43, 44, 45, 47, 48, 49, 51, 52, 53, 54, 56, 58, 62, 63, 64, 66, 68, 69, 70, 71, 72, 75, 79, 80], "fur": [73, 77], "furi": [30, 65, 78], "further": [8, 17, 26, 31, 33, 35, 40, 41, 45, 52, 54, 58, 75, 80], "furthermor": 80, "fuse": 55, "fusion": 25, "futur": [4, 16, 35, 51, 69, 72, 77, 78, 79], "futurist": [17, 24], "fvtk": 3, "fwdm": 70, "fwdti": 70, "fwdti_param": 70, "fwefit": 70, "g": [3, 17, 21, 25, 54, 77], "ga": 21, "gabriel": 24, "gain": [27, 38, 65, 77], "galaxi": [17, 24], "galleri": [20, 21], "game": [17, 77], "gan": [73, 77], "garyfallidi": [3, 8, 17, 24, 25, 26, 27, 30, 78], "gather": [74, 76], "gaussian": [5, 11, 30, 34, 38], "gave": [32, 44, 49, 57, 61, 63, 69, 74], "gb": 61, "gcc": 80, "gener": [3, 16, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 31, 33, 35, 36, 37, 38, 39, 40, 41, 43, 47, 51, 54, 55, 63, 64, 67, 71, 73, 75, 77, 80], "genu": 16, "geometri": 10, "gesta": [61, 63], "get": [3, 12, 18, 19, 20, 21, 22, 24, 25, 28, 29, 30, 31, 52, 53, 54, 56, 66, 70, 74, 76, 78, 80], "get_doc_exampl": 22, "get_doc_examples_imag": 22, "get_examples_list_from_li_tag": 22, "get_fnam": 79, "get_meta_tags_dict": 21, "get_spher": 79, "getelementsbytagnam": 21, "gh": [20, 21], "gibb": [13, 27], "girard": 24, "git": [6, 27, 32], "github": [16, 17, 18, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 38, 54, 58, 72, 80], "github_stats_block": 23, "github_stats_includ": 23, "github_stats_tag": 23, "github_visu": 23, "gitter": [18, 24, 25, 26, 27, 28, 29, 30, 54], "give": [4, 5, 7, 10, 11, 16, 19, 32, 49, 50, 59, 62, 63, 67, 70, 80], "given": [6, 11, 14, 15, 16, 28, 32, 35, 43, 47, 49, 53, 77], "gl": [26, 65], "glad": [48, 76], "glass": 3, "glsl": [24, 30], "go": [11, 12, 19, 31, 32, 34, 38, 40, 41, 45, 50, 63, 68, 77], "goal": [3, 16, 17, 25, 30, 56, 63, 65, 66, 74, 76, 80], "goe": 40, "gone": 58, "good": [6, 9, 12, 13, 26, 32, 43, 50, 54, 56, 63, 64, 67, 70, 71, 73, 74, 75, 76], "googl": [1, 4, 27, 32, 56, 58, 60, 66, 72, 75], "google_analyt": 21, "google_analytics_processor": 21, "google_analytics_tracking_id": 21, "googleanalyticsobject": 21, "gor": 54, "gorro\u00f1o": [26, 27], "got": [16, 27, 31, 32, 40, 43, 48, 53, 55, 59, 63, 64, 67, 69, 71, 75], "gotten": 32, "gpt": 32, "gpu": [30, 36, 40, 45, 54, 61], "grab": [32, 73], "gradient": [37, 40, 67], "gradient_t": [7, 79], "gradual": [21, 56, 80], "graduat": 31, "grant": 19, "graph": [21, 23, 26], "graphic": [3, 26], "grate": [56, 58, 62, 66, 68, 70, 72, 74, 78, 79], "great": [3, 6, 7, 11, 12, 16, 24, 40, 54, 75], "greater": [24, 75], "greatli": [72, 78], "green": [11, 15, 75], "greet": [4, 60, 62, 68, 70], "ground": [7, 8, 15, 29, 44, 46, 47, 50, 70], "group": [6, 22, 75], "groupnorm": [39, 48], "grow": [23, 72, 79], "grown": 79, "growth": 80, "gsoc": [3, 4, 8, 11, 12, 15, 17, 18, 23, 24, 25, 28, 29, 30, 33, 52, 54, 55, 56, 58, 60, 65, 66, 68, 70, 74, 79], "gsoc2024": 77, "gsod": [72, 80], "gtab": [49, 70], "gtab1": [32, 47], "gtab2": [32, 47], "gtab_2": 70, "gtf": 70, "guaj": 30, "guardian": [17, 24], "guess": 18, "gui": 24, "guid": [3, 74, 80], "guidanc": [56, 58, 60, 62, 68, 70, 72, 74, 78, 79, 80], "guidelin": [24, 25, 26, 28, 29, 30, 54, 55, 60, 80], "gzip": 21, "h": [4, 30], "h2": 22, "h3": 22, "ha": [3, 7, 10, 11, 15, 17, 19, 20, 21, 22, 24, 25, 26, 28, 29, 30, 31, 35, 36, 37, 41, 43, 45, 46, 47, 54, 55, 56, 58, 60, 61, 62, 63, 65, 66, 68, 70, 72, 73, 74, 75, 76, 78, 79, 80], "had": [6, 11, 12, 14, 16, 17, 20, 23, 27, 32, 38, 41, 42, 45, 46, 48, 49, 50, 53, 55, 56, 60, 61, 63, 64, 65, 66, 68, 70, 72, 73, 76, 77], "hadn": 32, "hahahah": 48, "haitz": [26, 27, 55, 61, 63], "half": [8, 16, 29], "hand": [5, 32, 34, 40, 63, 69, 73], "handl": [32, 37, 52, 56, 74, 80], "handmad": 57, "hang": [57, 74], "happen": [11, 32, 35, 52, 58, 62, 63, 64, 68, 75, 76], "happi": [3, 24, 25, 28, 29, 30, 31, 54, 63, 77, 78], "hard": [28, 29, 30, 63, 67], "harder": [17, 19], "hasn": [46, 68], "have": [3, 4, 6, 7, 8, 11, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 38, 40, 42, 43, 44, 45, 47, 50, 51, 54, 55, 56, 57, 58, 60, 61, 62, 63, 64, 66, 68, 70, 72, 73, 75, 76, 77, 78, 79], "haven": [71, 78], "hcp": [11, 12, 13, 14, 16], "hdf5": [61, 63], "he": [55, 59, 61, 63], "head": [8, 21, 32], "headach": 57, "health": [55, 80], "healthcar": 31, "healthi": [51, 55], "heard": [31, 32, 74], "heck": 32, "hectic": [68, 76], "hei": 32, "height": 19, "hello": [56, 58, 65, 66, 72, 74, 76, 78, 79], "help": [6, 18, 19, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 35, 40, 44, 45, 48, 49, 50, 51, 54, 56, 58, 59, 69, 71, 73, 74, 79, 80], "hemispher": 5, "henc": [46, 49, 50, 54], "henriqu": [17, 30], "here": [3, 6, 7, 10, 11, 17, 18, 24, 25, 26, 28, 29, 30, 32, 35, 37, 38, 40, 51, 54, 56, 57, 62, 64, 67, 79, 80], "herokuapp": [19, 20, 21], "hesit": 26, "heterogen": 7, "hexagon": 20, "hi": [4, 5, 6, 9, 16, 17, 55, 63, 64, 69], "high": [3, 9, 13, 17, 24, 25, 35, 36, 45], "higher": [3, 14, 21, 43, 45, 63, 71], "highli": [54, 72], "highlight": [16, 19, 23, 78], "hinder": 17, "hint": 32, "histor": 80, "histori": [32, 72], "hitch": 43, "hold": [40, 53], "hole": 67, "holidai": 73, "home": [19, 20, 21, 40], "honest": 66, "honestli": 32, "honeycomb": [20, 21, 22], "hook": 31, "hop": 21, "hope": [18, 31, 32, 65, 66, 68, 70, 73, 76, 78], "hopefulli": [46, 51, 68, 70, 77], "horizon": 54, "horizont": [12, 30], "host": [17, 19, 20, 21, 61], "hot": 77, "houd": 17, "hour": [6, 30, 32, 54, 74], "hous": 72, "hover": 21, "how": [4, 5, 6, 7, 8, 11, 15, 16, 26, 27, 32, 34, 35, 38, 46, 49, 56, 59, 60, 62, 69, 71, 73, 74, 75, 77, 79, 80], "howev": [5, 8, 9, 11, 16, 24, 25, 28, 29, 30, 34, 37, 46, 47, 49, 50, 54, 64, 71, 73, 74, 75, 78, 79], "hpc": [36, 40, 48], "hr": 54, "href": 22, "hstack": 32, "html": [17, 19, 21, 22, 23, 26, 72, 80], "html_content": [19, 21], "http": [17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 38, 54], "http404": 21, "huff": [17, 24, 25, 28, 29, 30, 54], "huge": 8, "human": [3, 5, 12, 13, 16, 17, 45], "hyper": 43, "hyperparamet": [40, 69, 71], "i": [3, 4, 5, 6, 7, 8, 9, 10, 11, 13, 14, 15, 16, 17, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "ianu\u015f": 30, "icm": [12, 13, 14], "icnr": 45, "icon": 27, "id": [21, 22], "id15": 17, "idea": [3, 7, 17, 18, 24, 25, 28, 29, 32, 37, 43, 61, 64, 69, 73, 77], "ideal": 21, "ident": 64, "identifi": [14, 19, 26, 47, 56, 59, 60, 65, 66, 71, 76], "idt": 11, "ifram": 19, "ignor": 5, "ij": 11, "ill": 66, "illustr": [15, 26, 67], "im": [24, 25, 27, 28, 29, 30, 54], "imag": [3, 4, 5, 6, 7, 8, 13, 14, 16, 17, 20, 21, 22, 24, 25, 26, 27, 28, 29, 33, 35, 36, 39, 43, 45, 47, 52, 53, 54, 55, 59, 63, 64, 68, 73, 74, 76, 79], "imagin": 73, "img": 22, "immedi": [49, 50, 58, 80], "immens": 74, "immers": 58, "impact": [40, 72, 80], "impart": 40, "impercept": 36, "imperfect": 11, "implaus": [9, 73], "implement": [3, 4, 5, 6, 7, 8, 10, 13, 15, 16, 17, 21, 24, 25, 28, 31, 32, 33, 35, 37, 38, 39, 40, 42, 44, 45, 46, 47, 49, 50, 51, 52, 54, 55, 56, 57, 59, 60, 61, 63, 64, 67, 68, 70, 71, 72, 74, 75, 77, 79], "implic": [69, 71], "implicit": 45, "implicitli": 75, "import": [3, 4, 5, 6, 14, 15, 16, 17, 19, 20, 21, 34, 35, 36, 42, 44, 46, 47, 52, 68, 72, 76, 78, 79, 80], "importantli": 17, "importerror": 4, "imposs": 17, "impress": [17, 35], "improv": [3, 4, 8, 12, 16, 17, 20, 24, 26, 30, 32, 33, 38, 40, 41, 43, 44, 51, 53, 54, 56, 58, 59, 60, 62, 63, 70, 72, 73, 79], "incf": [25, 28, 29], "includ": [8, 18, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 35, 40, 49, 54, 56, 58, 60, 66, 69, 72, 73, 74, 77, 79, 80], "incoher": 27, "incompat": 78, "incomplet": 8, "incorpor": [8, 47, 54, 80], "incorrectli": 50, "increas": [17, 26, 27, 32, 39, 46, 51, 54, 69, 71, 72, 80], "incred": 79, "incredibli": [56, 58, 74, 76], "inde": [14, 63, 75], "independ": 35, "index": [21, 22, 26, 32, 36], "indexerror": 32, "indic": [43, 75], "individu": [47, 51, 67, 72], "industri": 55, "infer": [3, 17, 30, 36, 51], "inform": [3, 4, 5, 6, 7, 14, 19, 21, 25, 26, 28, 32, 33, 37, 40, 43, 48, 49, 53, 72, 73, 80], "inherit": [7, 8, 57], "initi": [8, 10, 16, 24, 32, 37, 44, 45, 53, 54, 58, 59, 60, 61, 62, 66, 67, 70, 79, 80], "injuri": 55, "inner": [45, 51], "input": [4, 10, 11, 27, 28, 32, 35, 36, 39, 44, 59, 63, 64, 67, 71, 73, 77, 80], "input_shap": 48, "insert": 17, "insertbefor": 21, "insid": [3, 16, 40, 43, 49, 50], "insight": [35, 56, 58, 63, 65, 72], "inspir": [19, 24, 36, 80], "instabl": 36, "instal": [24, 40, 55, 56, 80], "installed_app": 23, "instanc": [7, 8, 26, 67], "instanti": [57, 67, 77], "instead": [19, 22, 26, 43, 50, 64, 67, 69, 80], "institut": 55, "instruct": 80, "instrument": [60, 62, 68, 70, 72], "insuffici": 11, "insur": [5, 8], "intact": 40, "integr": [8, 17, 23, 24, 30, 52, 54, 56, 60, 65, 66, 67, 68, 78, 79], "intend": [5, 16, 32, 34, 37, 41, 42, 44, 45, 47, 50, 52], "intens": [7, 13, 51, 63, 74, 80], "inter": 25, "interact": [17, 24, 40, 56, 80], "interest": [3, 5, 6, 15, 16, 17, 18, 26, 28, 54, 55, 63, 64, 73, 77], "interfac": [24, 25, 26, 28], "intermedi": [3, 17, 24, 25, 28, 29, 30, 51, 54], "intern": [6, 8, 20, 24, 25, 26, 28, 29, 30, 54, 61, 72], "interpol": [45, 63, 67], "interpret": 47, "intersect": 15, "interview": [17, 31, 32], "intimid": 32, "intra": 7, "intravoxel": 27, "introduc": [21, 32, 66, 75, 80], "introduct": [5, 17, 80], "introductori": 32, "introspect": 24, "introspectivepars": 24, "intuit": [67, 72, 73, 75, 80], "invalu": [56, 58, 74, 76, 78, 79], "invent": 3, "invers": 11, "invest": 60, "investig": [17, 29, 30, 54, 59, 75], "involv": [7, 11, 12, 13, 18, 25, 31, 41, 49, 54, 56, 58, 65, 72, 74, 79, 80], "io": [20, 21, 22, 80], "ioniz": 55, "ipython": [11, 16], "ismrm": [8, 30], "isn": [37, 44, 46], "isotrop": [44, 46, 47, 50, 52, 53], "issu": [9, 14, 15, 21, 24, 25, 26, 28, 29, 30, 32, 36, 40, 45, 47, 53, 58, 59, 62, 65, 67, 68, 70, 71, 78, 79, 80], "item": 26, "iter": [8, 31, 36, 45], "its": [3, 6, 16, 17, 18, 19, 21, 28, 31, 32, 34, 36, 45, 46, 49, 57, 60, 63, 72, 75, 77, 78, 80], "itself": [14, 50, 59], "iu": [40, 48], "ivim": [17, 27], "ixi": 33, "i\u00f1igo": [58, 79], "j": [21, 23, 30], "jacobian": 17, "javascript": 17, "jean": 17, "jensen": 11, "jespersen": 30, "jneumeth": 30, "job": [24, 31, 40, 43, 45, 48, 49], "joi": 32, "join": [22, 24, 56], "jon": [26, 27, 55, 61, 63], "jong": [28, 29, 30, 40, 54, 61], "jongsung": [29, 30, 54], "jorg": 69, "journal": 19, "journei": 75, "jpg": 21, "json": [20, 21, 22], "julio": [17, 30], "juneja": 30, "jupyt": 40, "just": [7, 9, 16, 18, 19, 21, 23, 32, 53, 57, 59, 60, 63, 68, 71, 72, 75], "k": [10, 30], "k_aniso": [49, 50], "k_bulk": [49, 50], "k_iso": [49, 50], "k_micro": 53, "k_shear": [49, 50], "kaggl": 32, "kati": [17, 24, 25, 28, 29, 30, 54], "kaustav": 80, "kayak": 73, "keep": [4, 14, 16, 21, 31, 46, 49, 59, 72, 76, 77], "kei": [18, 54, 56, 66, 74, 79, 80], "kept": [21, 40, 49], "kera": [35, 36, 39, 40, 48, 57, 59, 61, 63, 77], "kernel": [45, 59], "keyword": [21, 54, 68, 70, 74, 78], "kind": [19, 26, 32, 46, 77], "kindli": [8, 12, 13, 14, 63], "kl": [51, 67, 69, 71], "knew": 31, "know": [5, 6, 15, 16, 18, 19, 22, 27, 31, 32, 72, 73, 75], "knowledg": [3, 16, 17, 24, 25, 28, 29, 30, 31, 32, 54], "known": [7, 56], "koudoro": [24, 26, 27, 30, 54, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "kt": [5, 7, 53], "kullback": 67, "kurtosi": [3, 5, 6, 7, 8, 9, 10, 13, 14, 16, 17, 27, 30, 34, 42, 46, 47, 49, 50, 52, 53], "kwarg": [19, 21, 70], "l": [21, 30, 77], "l1": 15, "l2": [15, 35, 36], "lab": [24, 25, 26, 28, 29, 30, 54, 55, 69, 73], "label": 75, "laboratori": 55, "lack": [26, 72, 73, 80], "lai": [56, 60, 80], "laid": 58, "languag": [24, 27, 56], "laplac": 45, "laptop": 77, "larg": [11, 16, 54, 67, 69, 80], "larger": [5, 7, 12, 13, 15, 54], "largest": [12, 13], "last": [3, 4, 7, 8, 11, 13, 14, 16, 27, 33, 39, 40, 43, 45, 47, 48, 50, 58, 61, 63, 67, 70, 73, 75, 77], "lastli": [62, 72, 77, 80], "late": 18, "latecom": 32, "latent": [33, 35, 36, 40, 45, 61, 63, 64, 67, 69, 71, 73, 75, 77], "later": [31, 33, 36, 40, 43, 45, 49, 57, 64], "latest": [6, 22, 26, 74], "latter": 63, "launch": [55, 61], "layer": [21, 30, 35, 36, 39, 45, 48, 59, 61, 63, 67, 69, 76], "lazi": [54, 65], "lazy_load": [68, 70, 80], "ldm": [45, 51], "le": 17, "lead": [36, 67, 79, 80], "leader": 78, "lean": 80, "leap": 31, "learn": [3, 16, 17, 18, 24, 26, 28, 29, 30, 31, 32, 33, 40, 41, 45, 49, 54, 55, 59, 61, 69, 70, 71, 72, 73, 75, 77, 78, 79, 80], "learner": 45, "learnt": 71, "least": [5, 7, 8, 32, 36, 40, 45, 59, 75], "leav": 76, "led": 40, "left": [5, 8, 14, 59], "legarreta": [26, 27], "leibler": 67, "len": 22, "length": [73, 75, 77], "lesion": 30, "less": [5, 7, 8, 11, 33, 36, 43, 51, 61, 72, 76, 80], "lesser": 45, "let": [3, 27, 32, 48, 67, 72, 74, 76, 77, 78], "letter": 76, "level": [24, 71, 80], "leverag": [25, 56, 60], "li": [22, 56], "li_tag": 22, "lib": 80, "libhdf5": 80, "liblapack": 55, "librari": [17, 18, 19, 22, 23, 24, 25, 26, 27, 28, 29, 30, 42, 54, 55, 57, 59, 60, 62, 70, 80], "lie": 58, "life": [50, 52, 76], "lightn": 35, "lightweight": 17, "like": [3, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 24, 32, 48, 56, 66, 67, 70, 73, 74, 75, 76, 77], "likelihood": 36, "limit": [3, 5, 15, 30, 51], "line": [5, 6, 7, 11, 15, 16, 18, 20, 23, 24, 25, 26, 28, 29, 34, 37, 50, 51, 53, 55, 73, 77], "linear": [5, 7, 8, 63], "link": [1, 18, 19, 20, 22, 26, 30, 38, 72, 80], "linkedin": 31, "list": [11, 20, 21, 22, 23, 26, 28, 31, 32, 48, 50, 56, 80], "literatur": [7, 8, 19, 33], "littl": [35, 37, 40, 65, 70], "live": [5, 67], "liver": 17, "ll": [33, 34, 37, 38, 46, 47, 49, 52, 53, 73, 74, 78], "load": [23, 26, 30, 48, 54, 57, 61, 63, 65], "local": [4, 17, 21, 27, 32, 53, 55, 69, 70], "locat": [4, 21, 30, 71, 72, 73, 80], "locmem": 21, "locmemcach": 21, "log": [19, 32, 59, 69], "logarithm": 69, "logic": 6, "login": [19, 32, 40], "logist": 76, "long": [30, 57, 60, 62, 73], "longer": 69, "look": [9, 11, 12, 13, 16, 17, 24, 25, 28, 29, 30, 31, 32, 38, 39, 40, 41, 43, 44, 45, 46, 47, 50, 51, 52, 53, 54, 56, 58, 60, 61, 62, 71, 72, 74, 76, 77, 78, 79], "loop": [11, 30, 54, 55, 59], "loss": [36, 40, 45, 51, 55, 67, 69, 71, 75, 77], "lost": [64, 80], "lot": [8, 16, 18, 21, 26, 27, 30, 32, 40, 41, 42, 61, 63, 69, 70, 71, 74, 76, 77, 78], "love": [19, 26, 32], "low": 13, "lower": [7, 12, 13, 15, 16, 75, 76, 80], "lowest": 77, "lr": [43, 51], "ls_fit_cti": [47, 49, 50], "luciani": 17, "lucki": [55, 73], "luckili": 73, "lundel": 30, "m": [21, 30, 32, 47, 48, 50, 52, 63, 66, 68, 72, 74, 76, 78, 79], "machin": [24, 26, 27, 28, 29, 30, 31, 45, 54, 69], "made": [18, 19, 21, 26, 27, 32, 43, 44, 46, 48, 49, 51, 53, 56, 58, 60, 62, 63, 65, 72, 78, 79, 80], "mae": [63, 77], "magn": 30, "magnet": [6, 8, 21, 24, 25, 27], "magnitud": 15, "maharshi": 54, "mai": [18, 19, 32, 33, 36, 38, 43, 45, 51, 54, 61, 69, 73, 75], "mail": [11, 26, 56], "main": [3, 6, 8, 11, 16, 17, 21, 41, 44, 53, 55, 60, 63, 67, 68, 71, 72, 73, 76, 80], "mainli": [21, 55, 71], "maintain": [14, 19, 26, 27, 42, 54, 60, 62, 72, 76, 80], "mainten": 18, "major": [5, 7, 22, 23, 34, 37, 42, 46, 50, 62, 72, 80], "major_sect": 22, "major_section_dict": 22, "major_section_titl": 22, "majorli": [32, 49], "make": [3, 6, 12, 17, 19, 20, 21, 22, 24, 25, 26, 27, 28, 29, 30, 32, 36, 37, 41, 42, 44, 46, 47, 53, 54, 55, 56, 57, 59, 61, 63, 65, 66, 68, 69, 70, 71, 72, 73, 74, 76, 78, 79, 80], "manag": [18, 19, 26, 32, 38, 40, 41, 54, 61, 64, 72, 74, 76, 77, 80], "mandatori": 80, "mani": [3, 5, 6, 11, 18, 21, 24, 25, 26, 28, 29, 30, 32, 35, 40, 54, 56, 73, 75, 80], "manipul": [64, 73], "manner": [56, 64, 71], "manual": [6, 22, 29, 62, 72], "map": [7, 11, 12, 13, 14, 27, 37, 46, 52, 53], "marc": 17, "marcenko": 27, "march": 17, "mark": [19, 70, 74], "markdown": [18, 19, 21], "marker": 6, "markup": 27, "marral": 8, "maryam": 24, "mask": [8, 11, 35, 51, 70], "master": [5, 6, 8, 18, 31, 55], "match": [5, 7, 19, 36, 42, 44, 46, 47, 50, 59, 63, 73], "mate": 73, "materi": 27, "math": [8, 25, 30, 49, 54], "mathcal": 77, "mathemat": [7, 8, 10, 15, 24, 36, 45], "matplotlib": [60, 80], "matric": [8, 77], "matrix": [6, 10, 37, 42, 46, 49, 77], "matter": [3, 5, 7, 8, 11, 12, 16, 17, 25, 28, 29, 30, 45, 50, 63, 72, 73], "matthew": 3, "maurizio": 8, "mauro": 24, "max_length": 21, "maxim": [29, 30, 36], "maxima": [11, 16], "maximum": [20, 59, 75], "mayb": [33, 37, 70, 73], "mckinnei": 3, "md": [7, 11, 12, 13, 25, 28], "me": [4, 5, 16, 18, 19, 27, 31, 32, 33, 34, 36, 40, 42, 46, 48, 49, 53, 55, 56, 57, 58, 59, 60, 61, 63, 65, 67, 68, 69, 70, 71, 72, 74, 75, 76, 78, 79], "mean": [7, 8, 12, 13, 14, 15, 16, 18, 25, 27, 28, 32, 45, 47, 48, 49, 50, 51, 54, 63, 67, 69, 70, 71, 74, 75, 77], "meaning": [67, 73], "meant": [32, 48], "measur": [3, 5, 7, 8, 9, 10, 11, 12, 13, 14, 15, 17, 25, 28, 49, 50, 69, 70, 73], "mechan": 75, "mechanist": 30, "med": 30, "media": [7, 17], "medic": [17, 24, 25, 26, 27, 28, 29, 30, 45, 51, 54, 55], "medicin": [6, 8, 25, 30], "medium": 54, "meet": [6, 18, 19, 33, 35, 46, 55, 70, 75], "member": [11, 16, 32, 56], "memcach": 21, "memori": [21, 62, 80], "mention": [4, 6, 7, 10, 11, 12, 13, 14, 15, 69, 70, 73, 75], "mentor": [3, 4, 5, 6, 8, 11, 16, 17, 18, 19, 24, 25, 26, 28, 29, 30, 31, 32, 33, 42, 44, 48, 49, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 66, 67, 68, 69, 70, 72, 73, 74, 76, 78, 79, 80], "mentorship": [3, 17, 24, 25, 28, 29, 30, 54], "menu": [17, 21, 24], "merg": [5, 6, 8, 11, 18, 22, 27, 32, 53, 59, 70, 78, 80], "mess": [32, 67], "meta": 21, "meta_site_domain": 21, "meta_site_protocol": 21, "metadata": 72, "method": [3, 8, 10, 11, 12, 15, 17, 19, 21, 24, 25, 26, 27, 28, 29, 30, 38, 41, 44, 45, 47, 50, 52, 54, 55, 57, 59, 70, 73, 75], "meticul": 60, "metric": [3, 16, 24, 29, 30, 40, 54, 73, 80], "meval": [6, 46, 70], "mi": [29, 30, 54], "micro": 43, "microscop": [30, 47], "microstructur": [5, 24, 37, 45, 49, 50, 51], "mid": [7, 10, 11, 16], "middl": [8, 14, 32, 39, 59, 77], "middlewar": 21, "midterm": [6, 20, 21], "might": [14, 30, 44, 46, 52, 54, 59, 64, 73, 80], "mighti": 77, "mileston": [7, 8, 56, 62, 74, 78], "mimic": 59, "min": [11, 12, 16], "mind": [35, 46, 49, 72], "mine": 73, "minim": [45, 67, 77, 80], "minimum": [69, 75], "minmax": [43, 51], "minor": [4, 22], "minor_sect": 22, "minor_section_dict": 22, "minor_section_titl": 22, "minut": [21, 32, 61], "mirroredstrategi": 40, "mismatch": 32, "miss": [48, 55, 64], "mistak": 19, "mix": [34, 61], "mk": [8, 11, 12, 13, 14, 15], "ml": [31, 32], "mnist": [35, 36, 40, 43, 45], "mobil": 21, "modal": [25, 30, 35, 36, 54], "mode": 35, "model": [3, 5, 7, 8, 11, 13, 16, 17, 19, 20, 21, 24, 25, 30, 32, 33, 35, 37, 39, 40, 41, 42, 47, 48, 49, 50, 51, 52, 54, 55, 57, 59, 61, 63, 64, 67, 69, 70, 73, 75, 77], "moder": 17, "modern": [30, 80], "modestbrand": 19, "modif": 51, "modifi": [19, 21, 40, 41, 42, 46, 49, 54, 56, 63, 69, 80], "modul": [3, 4, 5, 6, 8, 10, 11, 12, 13, 14, 15, 17, 25, 34, 41, 46, 48, 56, 58, 60, 66, 68, 70, 71, 80], "modular": [30, 57, 67, 80], "moment": [4, 32, 50, 60], "momentum": 72, "monai": 51, "mondragon": 55, "monitor": [21, 61, 80], "montreal": 30, "more": [3, 4, 5, 6, 7, 8, 11, 16, 17, 18, 20, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 35, 36, 37, 38, 40, 43, 44, 45, 46, 47, 48, 50, 53, 54, 56, 57, 58, 59, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 78, 79, 80], "moreov": [5, 7, 8, 15, 16, 45, 72], "morpholog": 75, "morphologi": [73, 75], "most": [5, 6, 7, 8, 14, 15, 17, 18, 19, 20, 21, 26, 27, 40, 47, 63, 66, 70], "mostli": [32, 41, 76], "motion": 27, "motto": 24, "move": [6, 36, 45, 46, 47, 49, 68, 70, 72, 75], "mpi": [30, 54], "mr": [17, 27, 30], "mri": [3, 4, 5, 13, 17, 21, 24, 27, 29, 31, 32, 35, 37, 40, 45, 51, 55], "mrm": 30, "msc": [24, 55], "mse": [71, 73, 77], "much": [3, 32, 64, 66, 69, 74, 76, 79], "multi": [7, 9, 17, 24, 30, 40, 47, 52, 53], "multi_tensor": 70, "multi_tensor_dki": 7, "multi_tensor_fit": 50, "multi_voxel": 70, "multi_voxel_fit": [50, 70], "multimod": [29, 30, 36, 54], "multipl": [3, 6, 16, 17, 27, 29, 30, 37, 38, 45, 47, 48, 50, 52, 54, 62, 74, 80], "multiplaform": 17, "multipli": [10, 46, 50], "multiprocess": [30, 54], "multitensor": 32, "multithread": [24, 30, 54], "multivari": 25, "munich": 64, "must": [3, 20, 21, 30, 47, 63, 67], "muster": 31, "mutual": 3, "my": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 18, 19, 23, 27, 31, 32, 33, 34, 35, 36, 38, 40, 41, 42, 43, 44, 47, 48, 49, 50, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77, 80], "myelin": 5, "myself": [27, 31, 33], "n": [4, 10, 14, 30, 32, 63], "name": [4, 5, 10, 19, 20, 21, 51, 53, 56, 63, 80], "name_of_contributor": [72, 80], "nan": [67, 69], "narrow": 31, "natur": [36, 55, 63, 75], "nav": 20, "nav_pages_processor": [20, 21], "navbar": 21, "navig": [17, 72, 74, 80], "nearest": 45, "neat": 23, "necess": 31, "necessari": [27, 45, 47, 56, 58, 60, 62, 65, 70, 74, 75, 79], "necessarili": 73, "necessit": 72, "need": [3, 17, 19, 21, 23, 24, 25, 26, 28, 29, 30, 32, 34, 41, 42, 44, 46, 47, 49, 50, 52, 54, 56, 58, 59, 61, 62, 67, 69, 71, 72, 75, 77, 80], "needl": 36, "neg": [9, 45, 46], "neighbor": 45, "nervou": [31, 32], "net": [25, 36, 39], "neto": 30, "network": [3, 20, 21, 36, 45, 55, 57, 63, 67, 73, 75, 77, 80], "neural": [25, 30, 67, 80], "neuroanatomi": [21, 24, 25, 26, 28, 29, 30, 54], "neurodegen": 55, "neuroimag": [11, 26, 30, 54, 55, 79, 80], "neuroinformat": [25, 28, 29], "neuron": 5, "neurorehabilit": 55, "neurosci": [17, 30], "neuroscientist": 17, "neurostar": 29, "neurosurgeon": 17, "never": [11, 18, 31], "nevertheless": [7, 11, 30, 61, 73, 74], "new": [3, 4, 6, 8, 11, 12, 15, 16, 17, 18, 20, 21, 22, 23, 24, 25, 26, 27, 29, 30, 32, 36, 42, 44, 48, 49, 54, 55, 56, 63, 67, 70, 71, 72, 73, 74, 76, 78, 80], "new_fit": 70, "newspost": 21, "newton": 12, "next": [5, 10, 11, 17, 31, 33, 58], "nfb": [39, 51], "ni": 10, "nibabel": [57, 80], "nice": [6, 7, 11, 24, 64, 67, 77], "nifti": 25, "nipi": [4, 24, 25, 28, 29], "nl": 50, "nlmean": 27, "nn": [45, 63, 80], "noddi": 24, "node": [40, 61], "nois": [7, 13, 14, 17, 36, 39, 51], "noise_estim": 14, "noisi": [36, 43], "noisier": 7, "non": [5, 7, 11, 15, 26, 27, 45, 46, 47, 75], "none": [43, 48, 63, 70], "nonequilibrium": 36, "nonetheless": 43, "nonlinear": [3, 17], "nonrigid": [24, 29, 30, 54], "nor": [43, 71], "normal": [3, 10, 13, 24, 25, 26, 27, 28, 29, 30, 43, 45, 51, 54, 67, 69, 73], "nose": [4, 5, 7, 16], "nosetest": [4, 5, 16], "notat": [46, 50], "note": [10, 11, 26, 35, 41, 47, 63, 73, 78], "notebook": [16, 40], "noth": [48, 64], "notic": [6, 11, 14, 15, 30, 32, 41, 46, 54, 72], "notion": 36, "novel": 12, "now": [3, 4, 5, 8, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 27, 31, 32, 42, 44, 46, 47, 48, 50, 53, 55, 58, 61, 63, 67, 68, 69, 70, 75, 77, 78], "nowadai": 5, "np": [6, 15, 40, 44, 50, 63, 70], "num_res_channel": 51, "number": [7, 10, 11, 12, 13, 20, 23, 24, 26, 32, 40, 43, 61, 75], "numer": [8, 10, 11, 15, 16, 72], "numpi": [6, 15, 17, 24, 25, 26, 28, 29, 30, 54, 57, 60, 80], "nvidia": [36, 40], "nyu": 31, "o": 21, "object": [6, 16, 17, 20, 21, 22, 26, 40, 45, 48, 54, 55, 58, 62, 63, 67, 70, 72], "object_typ": 21, "objectdoesnotexist": [20, 21], "observ": [11, 37, 44, 45, 50], "obtain": [5, 7, 8, 9, 11, 12, 13, 14, 16, 35, 43, 45, 47, 50, 51], "obvious": 55, "occur": [26, 50, 70], "ocegueda": 17, "od": 30, "odf": [3, 12, 16, 25, 28], "odfg": 11, "off": [26, 32, 39], "offer": [3, 5, 26, 80], "offici": [32, 36, 39, 74], "offlin": 3, "often": [17, 19, 25, 67], "og": 21, "ol": [5, 7], "old": [72, 80], "older": [21, 48], "omar": 17, "onc": [32, 48, 54, 59, 67, 71, 77, 80], "one": [3, 5, 6, 7, 8, 10, 12, 13, 17, 18, 21, 22, 24, 28, 30, 31, 32, 36, 37, 44, 45, 46, 49, 51, 55, 57, 59, 61, 62, 63, 67, 68, 70, 71, 73, 75, 76, 77], "ones": [6, 14, 21, 32, 41, 42, 43, 63, 64, 66, 73, 75], "ong": 30, "ongo": [46, 72, 79, 80], "onli": [3, 4, 7, 11, 14, 17, 19, 22, 24, 29, 30, 31, 35, 37, 42, 43, 47, 48, 50, 51, 52, 53, 54, 64, 68, 69, 75, 79], "onlin": [17, 26, 48, 80], "onto": [53, 70], "open": [3, 5, 6, 16, 17, 18, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 45, 54, 55, 72, 77, 79], "opengl": [17, 24, 29], "openmp": [24, 30, 54], "oper": [11, 24, 33, 63, 67, 69, 80], "opportun": [54, 55, 56, 58, 65, 66, 70, 78, 79], "opposit": [11, 73], "optim": [3, 11, 12, 16, 20, 24, 40, 43, 62, 80], "optimist": 31, "option": [8, 11, 20, 21, 25, 28, 29, 30, 32, 39, 54, 80], "orbit": 24, "order": [3, 15, 21, 32, 34, 41, 42, 44, 47, 50, 63, 80], "ordinari": [5, 7, 8], "org": [17, 19, 26, 27, 74], "organ": [8, 11, 16, 18, 31, 32, 45, 55, 56, 59, 64, 71, 73, 77], "organiz": [72, 80], "orient": [3, 7, 11, 16, 25, 27, 28, 40], "origin": [6, 14, 35, 44, 46, 47, 51, 61, 67, 68, 72, 75, 77], "orthogon": 10, "other": [3, 5, 7, 10, 15, 16, 17, 18, 19, 21, 22, 23, 24, 26, 32, 34, 46, 48, 49, 54, 55, 56, 57, 58, 59, 60, 63, 69, 72, 73, 74], "otherwis": 61, "our": [1, 3, 17, 24, 25, 28, 29, 30, 38, 45, 47, 49, 50, 51, 54, 55, 56, 64, 65, 72, 73, 74, 75, 76, 77, 78, 79, 80], "ourselv": 47, "out": [9, 22, 26, 31, 32, 33, 34, 35, 40, 42, 44, 45, 46, 47, 50, 51, 52, 55, 58, 60, 68, 69, 70, 73, 75, 79], "outcom": [38, 56, 78], "outdoor": 73, "outer": [45, 51], "outlin": [43, 80], "outlook": 43, "output": [32, 35, 36, 38, 39, 40, 42, 43, 45, 49, 51, 54, 59, 63, 69, 80], "outsid": [31, 47, 49, 77], "over": [16, 32, 45, 56, 63, 72, 74, 80], "overal": [8, 26, 53, 62, 72, 79, 80], "overcam": 15, "overcom": [5, 11, 33, 45], "overestim": 14, "overfit": [55, 64], "overflow": 50, "overhead": 21, "overlai": 21, "overlap": 45, "overridden": 19, "overview": [27, 56, 80], "ow": 45, "own": [17, 18, 19, 24, 27, 49, 65, 78], "p": [19, 22, 48], "pac": 25, "pace": 76, "pack": 76, "packag": [5, 54, 59, 68, 70, 78, 79, 80], "page": [3, 11, 17, 19, 20, 21, 23, 24, 25, 26, 28, 29, 30, 54], "page_titl": 21, "page_url": [20, 21], "pages_in_nav": [20, 21], "pageview": 21, "paid": 72, "pain": 67, "pair": [10, 51, 53], "palermo": 8, "palombo": 30, "panel": [7, 12, 13, 14, 15, 16, 17, 19, 20, 21, 22], "paper": [3, 17, 32, 33, 35, 36, 44, 45, 46, 47, 50, 51, 61, 63, 64, 71, 73, 75, 77], "paradigm": [40, 45, 55], "paragon": 27, "parallel": [5, 10, 24, 30, 47, 54, 61, 62], "param": [50, 68], "paramet": [3, 8, 12, 13, 14, 16, 17, 21, 37, 40, 41, 42, 43, 44, 45, 46, 47, 50, 51, 56, 57, 59, 63, 64, 68, 69, 70, 71, 73, 75, 80], "parent": 32, "parentnod": 21, "pari": [12, 13, 14], "park": [28, 29, 30, 54], "pars": [19, 21, 22, 62], "parser": [19, 22, 24], "part": [5, 6, 7, 8, 11, 16, 18, 20, 26, 32, 42, 50, 55, 58, 63, 67, 71, 72, 79, 80], "parti": 67, "partial": [21, 63], "particip": [3, 16, 17, 24, 25, 28, 29, 30, 31, 54, 55, 58, 72], "particl": [24, 27], "particular": [4, 5, 6, 7, 8, 13, 14, 19, 60, 71], "particularli": [5, 11, 14, 15, 16, 42, 72, 74, 78, 80], "partli": 18, "pass": [20, 21, 36, 40, 42, 44, 49, 52, 53, 65, 68, 70, 80], "passion": [31, 79], "past": [19, 61, 66, 74, 75], "pastur": 27, "patch": [18, 64], "path": [4, 21, 22, 53], "patient": 55, "pattern": [18, 58, 59, 72], "pave": 80, "pca": [17, 27], "peak": [3, 27, 70], "pediatr": 30, "pend": 80, "peopl": [17, 19, 32], "pep": [62, 68], "pep8": [4, 44, 46, 53, 56], "per": 40, "perceiv": 71, "perceptu": 36, "perfect": [43, 55], "perfectli": [44, 50], "perform": [3, 7, 8, 10, 12, 14, 16, 17, 21, 24, 25, 27, 30, 33, 35, 39, 40, 43, 45, 51, 54, 58, 60, 62, 63, 73, 80], "perfus": [17, 25, 26, 27, 28, 29, 30, 54], "period": [5, 6, 8, 12, 15, 16, 19, 20, 22, 23, 32, 33, 58, 72, 77, 79, 80], "permiss": [19, 21], "permit": [29, 30, 34, 37, 40, 54], "perpendicular": [5, 11, 32, 47], "perpendicular_direct": 10, "persist": 75, "person": [6, 16, 39, 55, 72, 73, 74, 76, 78, 80], "personnel": 48, "perspect": [49, 50], "peterson": 17, "pft": 27, "phase": [16, 55, 56, 58, 60, 62, 68, 70, 72, 74, 79, 80], "phd": [4, 24, 55, 61, 77], "phenomenolog": 30, "phenomenon": 45, "philosophi": 27, "phone": 32, "photo": [6, 8, 77], "physic": [17, 24, 25, 28, 29, 30, 54, 61], "pi": 10, "pick": [32, 48, 75, 76], "pictur": 77, "piec": 19, "pip": 80, "pipelin": [3, 17, 35, 51, 54, 58, 62, 65, 80], "pitfal": [7, 11, 30, 54], "pixel": [36, 43, 45, 47, 51], "pixelcnn": [35, 36], "place": [19, 20, 48, 64, 67, 68, 76, 77], "plai": [17, 24, 43, 45, 74, 77], "plain": 26, "plaintext": 27, "plan": [8, 11, 12, 16, 18, 23, 47, 57, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 80], "planar": 30, "plane": [7, 10], "platform": [24, 72, 80], "plausibl": 73, "pleas": [3, 4, 17, 24, 25, 26, 28, 29, 30, 54, 78], "plot": [15, 16, 40, 51, 52, 73, 75], "plu": [17, 19, 20, 21, 30, 32], "poc": 66, "point": [6, 8, 11, 16, 23, 26, 35, 49, 50, 63, 64, 67, 74], "polar": 7, "polish": [32, 59], "polydata": 24, "poor": 11, "pop": 40, "popul": [5, 7, 19], "popular": [3, 17, 29, 30], "port": 17, "portion": [16, 65], "posit": [19, 55, 56, 68, 80], "possibl": [11, 17, 20, 26, 32, 52, 59, 68, 75, 77, 78], "possibli": [34, 54], "post": [5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 23, 26, 27, 31, 36, 43, 73, 75, 77], "post_dat": 21, "posterior": [33, 35, 36, 51], "postpon": [8, 63], "potenti": [24, 25, 26, 28, 29, 30, 33, 54, 55, 62, 72, 78, 79, 80], "power": [11, 56, 74, 77, 80], "pr": [27, 32, 53, 56, 58, 60, 62, 69, 74, 77, 79, 80], "practic": [13, 18, 54, 74, 76, 80], "pre": [13, 16, 36, 40, 61, 63], "precis": [7, 24, 50], "predetermin": 36, "predict": [16, 39, 73, 75], "predomin": 45, "prefer": [17, 28, 30, 38, 79], "preliminari": [5, 69], "prepar": [5, 18, 31, 72, 74, 80], "preprocess": [17, 33, 43, 51, 54], "preprocessor": 21, "presenc": [26, 55, 80], "present": [11, 13, 14, 15, 16, 26, 35, 44, 49, 53, 79, 80], "preserv": 72, "pretti": [51, 60], "prevent": [65, 69], "previou": [6, 7, 8, 9, 11, 12, 14, 15, 16, 17, 26, 32, 33, 36, 40, 43, 45, 51, 60, 61, 62, 64, 66, 77], "previous": [5, 7, 11, 13, 21, 31, 41, 42, 47, 49, 50, 53, 72, 80], "primari": [54, 65, 80], "primarili": 24, "primit": 26, "princip": 11, "print": [19, 21, 48], "prior": [35, 36, 67, 75, 77], "priori": 38, "priorit": 71, "prioriti": [22, 51, 63, 71, 78, 79], "probabilist": [24, 27, 29, 30, 36, 54], "probabl": [11, 16, 18, 44, 77], "problem": [4, 7, 15, 16, 21, 32, 44, 46, 49, 50, 52, 55, 59, 61, 62, 63, 65, 68, 69, 70, 73, 75, 77], "procedur": [5, 8, 10, 11, 12, 14, 15, 16, 30], "proceed": 30, "process": [7, 8, 9, 11, 12, 13, 14, 16, 17, 18, 20, 21, 24, 25, 26, 27, 29, 30, 31, 36, 40, 59, 60, 61, 62, 65, 66, 71, 72, 73, 74, 76, 77, 78, 79, 80], "processed_str": 19, "prod": 40, "produc": [5, 7, 15, 26, 32, 33, 36, 38, 43], "product": [6, 8, 10, 21, 58, 59, 60, 61, 66, 72, 74, 76, 78], "professor": 55, "profil": [11, 16], "program": [3, 8, 16, 17, 24, 25, 26, 28, 29, 30, 32, 54, 55, 56, 72, 76, 78], "progress": [43, 61, 63, 64], "project": [3, 4, 5, 7, 11, 12, 13, 21, 23, 31, 32, 48, 52, 55, 58, 62, 63, 64, 66, 68, 70, 72, 73, 74, 75, 76, 77], "promis": 71, "promot": 6, "prompt": [31, 40], "proof": 62, "propag": 27, "proper": [20, 21, 60, 72, 79], "properli": [5, 21, 35, 47, 49, 50, 61, 63, 72], "properti": [3, 19, 21, 30, 63, 73], "proport": 16, "propos": [4, 5, 6, 7, 11, 12, 15, 16, 17, 19, 24, 25, 26, 28, 29, 30, 32, 45, 54, 72, 77], "prospect": 78, "prove": [45, 69], "proven": 45, "provid": [8, 16, 21, 24, 25, 26, 27, 29, 30, 39, 42, 49, 50, 53, 54, 55, 56, 58, 62, 63, 64, 67, 68, 70, 72, 73, 74, 75, 78, 80], "pseudo": 63, "psf": [24, 32], "public": [3, 17, 20, 21, 26, 51, 69], "publicli": [3, 17], "publish": [27, 54, 77], "pull": [6, 8, 11, 13, 16, 18, 19, 20, 21, 22, 23, 26, 38, 54, 56, 62, 65, 80], "pure": [32, 51], "purpl": 51, "purpos": [19, 27, 30, 32, 61, 74], "pursu": 31, "push": [6, 19, 21, 31, 53, 68, 79, 80], "put": [20, 21, 31, 32, 39, 42, 49, 58, 60, 62, 67, 70, 73, 78], "py": [4, 5, 20, 21, 23, 34, 37, 38, 46, 47, 49, 50, 70, 80], "pyafq": 74, "pyi": [70, 80], "pyinstal": 24, "python": [3, 4, 5, 17, 18, 19, 21, 24, 25, 26, 27, 28, 31, 32, 54, 55, 56, 80], "pytorch": [30, 33, 45, 54, 55, 59, 61, 63], "q": [21, 30, 34], "q1": 34, "q2": 34, "qa": [3, 17, 24], "qamar": [28, 29], "qt": [17, 24, 25, 28], "qti": [32, 41, 42, 44, 46, 47, 49, 50, 52, 53], "qualit": [36, 43, 45, 51], "qualiti": [3, 8, 12, 13, 16, 17, 24, 35, 36, 62, 71, 72, 73, 76], "quantif": 5, "quantifi": 5, "quantit": [45, 51], "quantiz": 45, "quasi": 12, "question": [24, 25, 27, 28, 29, 30, 35, 36, 54], "quick": [72, 80], "quickbundl": 24, "quickbundlesx": 24, "quickli": [6, 33, 40, 51, 75], "quit": [46, 70, 72, 74], "r": [6, 19, 21, 30, 45, 75], "racket": 24, "radial": [7, 8, 12, 13, 14, 16, 47, 49, 50], "radiat": 55, "rafael": [4, 17, 30], "rais": [21, 48, 62, 65, 70, 80], "ran": [40, 43, 45, 48, 50, 78], "random": [36, 40, 45, 67], "rang": [15, 21, 51, 63, 69, 75], "ranveer": 24, "rate": [40, 45, 61], "rather": [35, 44, 45, 46, 72, 75], "ravel": 15, "raw": 8, "rd": [7, 8, 12, 13], "re": [3, 19, 27, 39, 42, 47, 50, 52, 53, 72, 74, 79, 80], "reach": [11, 15, 35, 58, 79], "read": [3, 6, 17, 24, 25, 27, 28, 29, 30, 31, 32, 33, 40, 44, 46, 48, 54, 56, 58, 60, 61, 62, 64, 65, 68, 70, 72, 73, 74, 75, 76, 78], "readabl": [44, 46, 54, 56, 60, 80], "reader": 72, "readi": [18, 40, 54, 58, 78], "readili": 3, "reagan": [24, 30], "real": [5, 8, 12, 13, 14, 16, 19, 21, 47, 49, 50, 52, 77], "realist": [3, 17, 38], "realiz": [6, 30, 42, 44, 46, 47, 49, 50, 54, 70], "realli": [21, 24, 32, 43, 52, 55, 58, 61, 63, 70, 75, 77, 79], "rearrang": 42, "reason": [24, 31, 32, 39, 44, 51, 52, 63, 70, 71, 74, 75, 77, 80], "rebas": 32, "receiv": [3, 8, 11, 17, 24, 25, 28, 29, 30, 54, 56, 58, 63, 68, 70, 79], "recent": [6, 7, 8, 17, 19, 26, 30, 48], "recogn": [4, 68], "recommend": [3, 76, 80], "reconst": [70, 80], "reconstruct": [5, 8, 9, 11, 12, 13, 14, 17, 21, 25, 27, 28, 30, 35, 36, 39, 43, 45, 51, 59, 62, 63, 67, 71, 73, 77], "record": 3, "recov": 66, "rectangl": 77, "recurs": 22, "red": [11, 15, 16, 36, 40, 51], "redirect": 72, "reduc": [8, 11, 21, 24, 36, 40, 55, 56, 62, 63, 67, 80], "reduce_mean": 40, "reduct": [40, 80], "redund": 4, "ref": [20, 21], "refactor": [54, 57, 80], "refer": [3, 10, 17, 24, 25, 26, 28, 29, 30, 37, 45, 47, 52, 53, 54, 67, 73, 74, 80], "refin": [18, 62, 74, 80], "reflect": [21, 27, 54, 56, 66, 74, 76, 80], "refresh": 73, "regain": 66, "regard": 31, "regardless": [47, 75], "regim": 15, "region": [13, 15, 16, 28, 73], "regist": [19, 26, 54], "registr": [3, 21, 24, 27, 28, 33], "registri": [79, 80], "regress": [3, 17, 35, 64, 67], "regular": [19, 64, 67, 75, 77], "regularli": [30, 54], "reinforc": 79, "rekindl": 17, "rel": [5, 6, 11, 15, 19, 22, 30], "rel_url": 22, "relat": [5, 12, 14, 21, 24, 25, 26, 27, 28, 29, 30, 32, 52, 53, 54, 68, 72, 74, 76, 77, 78, 79, 80], "relationship": [32, 37, 38], "releas": [18, 27, 80], "relev": [7, 8, 11, 15, 16, 26, 31, 34, 37, 56, 57, 76, 80], "reli": 45, "reliabl": [56, 60, 62, 73, 80], "remain": [52, 53, 54, 62, 68, 70, 72, 78], "remind": 11, "remot": 40, "remov": [4, 11, 14, 21, 27, 29, 36, 47, 50, 53, 62], "render": [21, 23, 26, 72], "reorgan": 80, "reparametr": 36, "reparametrizationtricksampl": [67, 69], "repetit": 80, "replac": [11, 14, 19, 21, 22, 35, 48], "replic": 63, "repo": [19, 20, 21, 55, 59], "repo_info": [21, 22], "report": [9, 15, 24, 27, 51, 52, 53, 59, 78, 79], "repositori": [6, 8, 11, 17, 18, 19, 20, 21, 23, 26, 27, 45, 61, 63, 70, 72], "repository_nam": 23, "repres": [5, 7, 22, 38, 46, 47, 62, 75, 80], "represent": [3, 43, 47, 67, 71, 73, 77], "reprocess": [11, 12], "reproduc": [12, 55, 59, 80], "reproducibli": [3, 17], "request": [6, 8, 11, 13, 16, 18, 19, 20, 21, 22, 23, 26, 29, 30, 40, 48, 54, 55, 56, 62, 65, 80], "requir": [3, 7, 8, 10, 11, 13, 14, 16, 17, 19, 21, 24, 25, 27, 28, 29, 30, 33, 35, 36, 37, 38, 40, 42, 44, 46, 47, 49, 53, 54, 58, 69, 72, 74], "reschedul": 16, "research": [3, 5, 6, 16, 24, 25, 26, 28, 29, 30, 31, 32, 35, 36, 40, 44, 48, 52, 54, 55, 56, 58, 63, 66, 75, 77, 80], "resembl": [38, 40, 49, 51], "reserv": 73, "reset": 30, "reshap": [26, 63], "reshuffl": 45, "residu": [43, 45], "residualblock": 39, "resili": 64, "resist": 80, "resiz": [45, 51, 63], "reslic": 43, "resolut": [24, 80], "resolv": [4, 5, 6, 10, 15, 16, 46, 48, 60, 65, 70, 78, 79], "reson": [6, 8, 21, 24, 25, 27], "resort": 40, "resourc": [17, 45, 48, 54, 75, 80], "respect": [39, 43, 45, 51, 61, 63], "respons": [17, 19, 20, 21, 22, 68, 80], "response_json": [20, 21, 22], "rest": [32, 39, 40, 46], "restrict": [5, 17, 34, 36], "restructur": 80, "restructuredtext": [26, 27, 72], "result": [6, 12, 16, 22, 27, 32, 35, 39, 40, 45, 51, 52, 54, 61, 66, 69, 71, 73, 77, 80], "resum": [34, 37, 76], "retriev": [21, 53, 80], "return": [19, 20, 21, 22, 44, 66, 67, 70], "return_mask": 14, "reveal": [30, 48], "revers": 36, "review": [8, 15, 26, 32, 53, 56, 60, 66, 69, 70, 72, 76, 78, 79, 80], "revis": [8, 11, 16, 80], "revisit": 15, "rewrit": 26, "rf": 80, "rhythm": 76, "rich": 35, "right": [5, 8, 17, 31, 32, 35, 56, 59, 67, 75, 79], "rigor": 78, "ring": 27, "risk": 80, "rk": [8, 11, 12, 13, 14], "rm": 80, "roadmap": 26, "robin": [65, 79], "robust": [5, 7, 8, 17, 25, 46, 47, 54, 60, 62, 78, 79, 80], "roi": [28, 65, 79], "rokem": [3, 6, 17, 24, 26, 27], "role": 74, "romain": [12, 13, 14], "room": [27, 32, 56, 63], "roomi": 32, "root2": [44, 46, 47], "rotat": [8, 10], "row": [45, 51], "rp": 48, "rst": [37, 72], "ruff": 62, "rule": 51, "run": [4, 5, 11, 24, 39, 46, 47, 48, 49, 50, 53, 55, 57, 59, 61, 63, 71, 74, 75, 80], "runspe": 4, "rush": 32, "s0": 70, "s_conta": 70, "safe": 47, "sagar": 32, "sagitt": [12, 30], "sai": [32, 47, 63, 67, 75, 77, 80], "said": 75, "sake": 40, "same": [8, 11, 20, 24, 25, 26, 28, 29, 30, 31, 32, 35, 40, 41, 45, 48, 50, 51, 54, 59, 63, 69, 75], "sampl": [7, 11, 12, 16, 35, 36, 40, 45, 51, 61, 63, 64, 67, 69, 73, 75, 77], "satisfi": [72, 74], "save": [7, 8, 19, 20, 21, 38, 40], "saw": 55, "sbatch": 48, "scalabl": [18, 36], "scalar": [63, 64], "scale": [18, 21, 51, 80], "scan": 5, "scanner": 7, "scarciti": 48, "scenario": [34, 60, 80], "scene": 24, "schedul": [7, 36, 76], "school": 31, "scienc": [24, 25, 26, 28, 29, 30, 32, 54, 55, 75], "scientif": [3, 16, 17, 24, 25, 26, 28, 29, 30, 54, 73], "scientist": [24, 25, 26, 28, 29, 30, 54], "scifi": [17, 24], "scikit": [24, 68, 80], "scipi": [12, 17, 43, 51, 60, 80], "scopatz": [17, 24, 25, 28, 29, 30, 54], "scope": 56, "score": [21, 36, 73], "scrape": 22, "scratch": [18, 19, 45], "screenshot": 20, "script": [4, 5, 6, 11, 12, 16, 19, 20, 21, 24, 57, 62, 79, 80], "sd": 39, "seamless": 60, "search": [20, 31, 71, 75], "searchabl": 80, "season": [27, 72, 80], "sec": 12, "second": [6, 7, 8, 10, 15, 16, 17, 32, 34, 43, 45, 51, 60, 69], "secondli": 31, "section": [7, 20, 21, 22, 26, 27, 32, 34, 37], "section_typ": [20, 21], "secur": [18, 19, 21], "see": [4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 21, 23, 24, 25, 26, 28, 29, 30, 36, 38, 40, 43, 44, 45, 47, 48, 54, 63, 64, 66, 71, 72, 73, 74, 75, 77, 79, 80], "seek": [19, 53, 58, 67], "seem": [7, 9, 11, 12, 13, 14, 15, 16, 31, 43, 50, 51, 59, 69, 73], "seen": [33, 35, 43], "segment": [3, 28, 54, 80], "select": [16, 18, 21, 28, 29, 30, 32, 54, 56, 62, 64, 79, 80], "self": [19, 21, 50, 70, 80], "send": [21, 32], "senior": 31, "sensit": [5, 7], "seo": 21, "separ": [11, 19, 20, 22, 35, 36, 39, 52, 54, 59, 68, 79], "sequenc": 30, "sequenti": [48, 63], "serg": [24, 26, 27, 30, 54, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "seri": [24, 26, 80], "serious": 32, "serv": 26, "server": [18, 20, 25, 40, 72], "session": [55, 70], "set": [3, 7, 14, 17, 18, 19, 20, 21, 22, 23, 25, 27, 28, 32, 36, 40, 48, 56, 61, 63, 67, 69, 72, 74, 78, 80], "setback": 66, "settl": 76, "setup": [21, 45, 80], "seventh": 70, "sever": [5, 18, 19, 22, 28, 30, 32, 37, 38, 42, 54, 56, 72, 75, 79, 80], "sex": 33, "shade": 24, "shader": [24, 30], "shape": [32, 40, 42, 43, 44, 51, 59, 70, 72, 78], "share": [8, 16, 21, 24, 25, 26, 28, 29, 30, 41, 54, 56, 62, 66, 72, 74, 76, 78, 79], "sheath": 5, "shell": [30, 79], "shemesh": 30, "shilpi": 32, "shirt": 8, "short": [11, 73], "shorter": [73, 75], "shortli": [71, 80], "shot": [32, 62], "should": [3, 8, 17, 19, 21, 24, 25, 26, 28, 29, 30, 32, 42, 51, 54, 55, 59, 63, 67, 69, 70, 75, 77, 80], "show": [3, 8, 9, 11, 12, 14, 15, 16, 17, 22, 23, 26, 27, 30, 32, 35, 36, 40, 46, 51, 59, 73], "show_in_nav": [20, 21], "showcas": [18, 62, 79], "shown": [3, 5, 7, 10, 11, 12, 14, 15, 16, 35, 36, 43, 45, 46, 51, 61, 77], "shreya": [25, 28, 29, 30], "shuffl": 45, "side": [8, 71, 73], "sigma": 14, "sign": 46, "signal": [5, 7, 16, 17, 25, 26, 27, 28, 29, 30, 32, 37, 38, 41, 46, 47, 49, 54, 70], "signal_dki": 7, "signatur": [70, 80], "signific": [15, 56, 60, 62, 65, 72, 74, 76, 78, 79, 80], "significantli": [14, 41, 53, 62, 80], "sim": [5, 7, 80], "simd": [30, 54], "similar": [3, 12, 13, 16, 22, 24, 29, 30, 32, 35, 41, 44, 47, 50, 51, 54, 63, 75], "similarli": [36, 45, 46], "simpl": [5, 7, 14, 19, 21, 29, 30, 36, 62, 71], "simpler": [8, 11, 72, 75], "simplest": [5, 32], "simpli": [23, 44], "simplif": 80, "simplifi": [11, 24, 30, 54, 74, 80], "simt": [30, 54], "simul": [4, 5, 6, 8, 11, 15, 32, 34, 50, 52, 53, 70, 80], "simultan": [17, 74], "sinc": [6, 7, 11, 14, 16, 19, 30, 32, 39, 50], "singl": [20, 27, 30, 36, 37, 52, 67, 75], "single_voxel_fit": 70, "singular": [10, 16], "site": [20, 21, 72, 80], "situat": [15, 47, 50], "sixth": 68, "size": [39, 40, 45, 51, 63], "skare": 30, "skill": [3, 17, 24, 25, 28, 29, 30, 32, 54, 55, 74, 79], "skull": [33, 51], "slate": 40, "sleep": 64, "slice": [43, 45, 51], "slicer": 30, "slide": 17, "slight": [44, 51], "slightli": [29, 30, 61], "slow": [40, 65, 75], "slower": 76, "slurm": 40, "small": [6, 11, 14, 15, 18, 24, 25, 28, 29, 30, 47, 54, 55, 58, 59, 69, 72], "small_64d": 7, "smaller": [5, 8, 11, 14, 15, 74], "smart": 73, "smooth": [45, 62], "smoother": 80, "smoothli": 77, "sn": 32, "sne": [73, 75], "snippet": [21, 61], "snr": [11, 70], "so": [3, 4, 5, 6, 8, 11, 16, 17, 23, 26, 29, 31, 32, 35, 36, 37, 38, 40, 42, 43, 44, 46, 47, 48, 50, 53, 55, 59, 61, 62, 63, 64, 67, 71, 73, 74, 75, 77], "social": [17, 18, 19, 20, 21], "societi": [6, 8, 30], "softwar": [3, 5, 6, 17, 18, 21, 24, 25, 26, 28, 29, 30, 32, 54, 55, 79, 80], "solid": [27, 60, 74, 80], "solut": [5, 7, 8, 10, 15, 16, 50, 69, 70, 75, 78, 79], "solv": [6, 7, 15, 16, 21, 32, 55, 59, 63, 65, 67, 69, 75, 80], "some": [4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 20, 21, 23, 24, 25, 26, 27, 28, 29, 30, 32, 33, 34, 36, 37, 40, 41, 42, 44, 45, 46, 48, 50, 52, 53, 54, 59, 60, 61, 62, 63, 64, 68, 70, 73, 74, 75, 76, 78, 79], "somealgorithm": 30, "somehow": 22, "someth": [17, 18, 31, 46, 48, 73], "sometim": 76, "somewher": 44, "soon": [6, 16, 17, 20, 21, 31, 52, 68, 70, 78, 80], "sort": [43, 63], "sound": [3, 53], "soup": 22, "sourc": [3, 5, 6, 16, 17, 18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 33, 34, 45, 46, 47, 49, 50, 52, 53, 54, 55, 56, 65, 72, 79, 80], "space": [3, 17, 33, 35, 36, 51, 61, 63, 64, 67, 69, 71, 73, 75, 77], "span": 75, "spatial": [5, 11, 16, 25, 26, 27, 28, 29, 30, 45, 54], "special": [25, 26, 27, 28, 29, 30, 32, 54, 72], "specif": [5, 12, 13, 14, 15, 16, 17, 19, 30, 32, 45, 56, 63, 65, 68, 70, 71, 72, 73, 74, 75, 76, 77, 80], "specifi": [21, 55, 80], "speed": [12, 17, 21, 61, 66, 74], "spend": 32, "spent": [32, 34, 40, 50, 56, 63, 76], "sphere": 11, "spheric": 27, "sphinx": [17, 18, 26, 27, 37, 54], "spin": [26, 30, 40], "spinal": 55, "splenium": 16, "split": [8, 22, 26], "split_cti_param": 47, "spread": 18, "spyder": 46, "sqrt": 53, "squar": [5, 7, 8, 53, 71, 75], "squash": 32, "squeez": 44, "src": [19, 21, 22], "sreekar": [30, 54], "ssd": [29, 30], "st": 30, "stabil": [36, 80], "stabl": [11, 36, 51], "stablediffus": 39, "stack": 32, "stage": [74, 80], "stai": [1, 30, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 80], "stand": 30, "standard": [4, 5, 7, 8, 9, 10, 11, 12, 15, 16, 18, 26, 28, 41, 42, 44, 46, 53, 60, 69, 72, 80], "start": [4, 6, 11, 17, 18, 19, 20, 24, 27, 31, 32, 33, 37, 40, 46, 48, 49, 50, 55, 59, 63, 67, 70, 71, 74, 77, 79, 80], "startswith": 22, "startup": 80, "stat": [56, 80], "state": [6, 8, 24, 25, 26, 28, 29, 30, 51, 54], "statement": [48, 74, 76], "static": [19, 21, 26], "statist": [3, 7, 16, 21, 22, 25, 26, 27, 28, 29, 30, 45, 54], "statu": [31, 55], "status_cod": [21, 22], "steadi": [74, 75], "steep": 74, "stem": 45, "step": [4, 5, 10, 11, 13, 16, 17, 21, 27, 28, 30, 32, 33, 36, 40, 43, 45, 51, 54, 56, 61, 62, 64, 73, 74, 75], "stick": 24, "still": [3, 5, 11, 12, 14, 15, 20, 22, 44, 47, 51, 54, 57, 59, 62, 63, 70, 72, 76, 77, 80], "stipend": 3, "stop": [6, 73], "store": [19, 25, 59, 71], "str": [22, 70], "straightforward": [60, 71, 75], "strang": 59, "strategi": [7, 11, 14, 17, 33, 40, 61, 66, 71, 73], "streamlin": [3, 24, 27, 28, 29, 30, 54, 61, 63, 64, 71, 73, 74, 75, 77, 80], "strengthen": 32, "stretch": 51, "stride": [39, 56], "string": [21, 22], "strip": 51, "strip_tag": [21, 22], "stroke": 17, "strong": [25, 29, 30, 56], "structur": [14, 16, 17, 24, 25, 26, 27, 28, 29, 30, 43, 45, 48, 51, 54, 56, 72, 80], "stub": 80, "student": [3, 17, 24, 25, 26, 28, 29, 30, 31, 54, 55, 56], "studi": [5, 8, 30, 54, 56], "stuff": [32, 70], "stumbl": 32, "stun": 24, "style": [20, 54, 55, 56, 57, 72], "sub": [7, 8, 31, 45, 62, 66, 80], "subfunct": 11, "subject": 28, "submiss": 32, "submit": [5, 11, 16, 23, 31, 32, 52, 56, 62, 65, 68, 70, 79, 80], "submodul": 80, "subsect": 11, "subset": 80, "succe": 61, "succeed": 77, "success": [32, 56, 58, 63], "successfulli": [15, 31, 46, 49, 62, 78], "suffer": 26, "suffic": 53, "suffici": 11, "suggest": [4, 5, 6, 14, 18, 42, 48, 49, 63, 69, 72, 73, 80], "suit": [43, 56, 80], "sum": [16, 40, 45], "summar": [6, 7, 8, 16, 40, 79], "summari": [10, 11, 26, 77], "summer": [4, 5, 6, 15, 26, 31, 55, 56, 58, 60, 66, 72], "sung": [28, 29, 30, 54, 61], "super": [19, 21, 32], "superior": [45, 51], "supervis": 16, "supervisor": 55, "suppli": [12, 13, 14, 56], "support": [24, 28, 29, 54, 56, 58, 62, 66, 68, 70, 72, 74, 76, 78, 79, 80], "suppos": [32, 53], "sure": [6, 30, 41, 42, 44, 46, 47, 49, 50, 52, 53, 54, 67, 72, 75], "surfac": 24, "surgeri": 55, "surprisingli": 32, "survei": 33, "suspect": 69, "swish": 39, "switch": 30, "symlink": 26, "symmetr": [3, 24, 27, 47], "symmetri": [5, 11], "syn": 3, "sync": 21, "syntax": 40, "synthet": [31, 32, 34, 55], "system": [15, 18, 19, 24, 27, 32, 53, 55, 72, 80], "systemat": [24, 63, 79, 80], "t": [6, 8, 32, 34, 35, 37, 38, 39, 40, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 60, 61, 66, 68, 70, 71, 72, 73, 75, 76, 78, 79], "t1": [3, 14, 33, 40, 51], "tabesh": [8, 11, 15], "tabl": [32, 37], "tackl": [32, 72, 74], "tag": [19, 21, 22, 23, 72, 80], "take": [7, 11, 12, 17, 21, 24, 25, 28, 29, 30, 31, 32, 34, 40, 42, 44, 46, 47, 48, 49, 50, 54, 57, 61, 63, 64, 67, 70, 71, 72, 73, 74, 78], "taken": [6, 7, 8, 67, 76], "talk": [44, 46, 55, 68], "tangibl": [66, 77], "tardi": 32, "target": [19, 80], "tariq": 27, "task": [3, 17, 22, 26, 32, 34, 36, 44, 46, 47, 49, 54, 55, 58, 60, 61, 62, 66, 70, 72, 74, 78, 79, 80], "taught": 79, "teach": [5, 80], "team": [6, 26, 58, 66, 79, 80], "teammat": 79, "tech": 32, "technic": [46, 71, 74, 79], "techniqu": [4, 5, 11, 14, 16, 30, 36, 54, 65, 69, 80], "technologi": [24, 30, 32, 54, 55], "tell": [5, 68, 73], "tellaetx": [55, 58, 79], "templat": [19, 20, 21, 23, 33], "temporarili": 19, "tensor": [5, 7, 8, 11, 15, 16, 24, 27, 28, 29, 34, 38, 41, 42, 44, 46, 49, 50, 52, 53, 54, 59, 63], "tensor_slic": 48, "tensorboard": 61, "tensorflow": [25, 30, 33, 36, 40, 45, 54, 55, 57, 59, 63, 64, 67, 75, 77], "term": [7, 10, 11, 16, 30, 34, 36, 51, 60, 76], "termin": [27, 32], "test": [4, 5, 6, 7, 8, 11, 16, 17, 18, 19, 20, 24, 28, 29, 30, 32, 34, 37, 40, 41, 43, 45, 46, 51, 53, 54, 56, 58, 65, 66, 70, 72, 74, 75, 78, 79, 80], "test_cti": 47, "test_cti_fit": [47, 49, 50, 52], "test_fit": 47, "test_fwdti": 70, "test_fwdti_singlevoxel": 70, "test_split_cti_param": [47, 50], "test_voxel": [4, 5], "text": [22, 24, 26], "textfield": 21, "textual": [26, 27], "textur": [14, 30], "tf": [40, 59, 61, 63], "tfp": [35, 36], "than": [7, 11, 14, 15, 17, 21, 22, 26, 29, 30, 31, 33, 35, 37, 40, 44, 45, 46, 48, 54, 57, 61, 63, 71, 73, 74, 76], "thank": [5, 6, 26, 27, 56, 58, 60, 62, 63, 65, 66, 68, 70, 72, 74, 75, 76, 77, 78, 79], "thankfulli": [20, 64, 69], "thei": [4, 8, 19, 21, 22, 27, 30, 32, 36, 42, 45, 47, 50, 51, 53, 58, 59, 62, 63, 64, 69, 71, 72, 73, 75, 78, 79, 80], "them": [11, 16, 17, 21, 24, 25, 26, 27, 28, 29, 30, 32, 33, 35, 42, 43, 45, 47, 49, 53, 54, 56, 57, 61, 63, 67, 70, 72, 75, 78, 80], "theme": 43, "theoret": [69, 71, 75], "theori": [34, 37], "therebi": [35, 53, 80], "therefor": [5, 8, 10, 11, 14, 34, 35, 36, 38, 42, 46, 50], "thermodynam": 36, "thesi": 55, "thi": [1, 3, 4, 5, 6, 7, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "thing": [3, 17, 20, 24, 25, 28, 29, 30, 31, 32, 35, 37, 44, 49, 51, 53, 54, 57, 63, 73], "think": [17, 20, 52, 57, 61, 64, 67, 69, 71], "third": [15, 62, 67], "thorough": [53, 72, 75, 80], "thoroughli": [28, 31, 53, 60], "those": [15, 17, 21, 24, 26, 29, 30, 34, 38, 42, 49, 54, 77], "though": [32, 47, 48, 52, 59], "thought": [18, 47, 64, 67, 69, 75], "thread": [30, 54], "three": [8, 12, 15, 24, 39, 47, 72, 80], "threw": 32, "thrill": [32, 56, 62, 78], "through": [3, 17, 18, 19, 20, 23, 27, 31, 32, 34, 35, 36, 41, 43, 44, 45, 47, 48, 51, 56, 58, 62, 63, 68, 70, 72, 74, 75, 76, 78, 79, 80], "throughout": [18, 19, 79], "throw": 76, "thu": [5, 14, 16, 61, 63, 67, 68, 71], "thumb": 21, "thumbnail": [21, 22], "thursdai": 73, "tick": 32, "tie": 77, "time": [8, 11, 16, 18, 19, 21, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 37, 39, 40, 41, 42, 43, 44, 46, 47, 48, 49, 50, 52, 54, 56, 59, 60, 61, 62, 63, 66, 68, 71, 72, 74, 75, 76, 77, 80], "timelin": [19, 26], "timestep": [39, 40], "timezon": 21, "tini": [18, 24], "tinker": 71, "tip": [5, 6, 80], "tissu": [3, 5, 7, 17, 30, 37, 49, 50], "titl": [18, 21, 22, 31], "todai": [73, 78], "togeth": [24, 25, 26, 27, 28, 29, 30, 32, 39, 42, 54, 57, 67, 73, 75], "token": 19, "told": [32, 55], "tomorrow": [5, 78], "ton": [32, 40, 68, 70], "too": [32, 40, 57, 67, 69], "took": [8, 32, 35, 39, 42, 49, 55], "tool": [3, 17, 18, 20, 26, 54, 56, 74, 80], "toolkit": 17, "top": [6, 21, 35, 50, 77], "topdown": 51, "topic": [17, 24, 25, 26, 28, 29, 30, 32, 54, 77, 80], "topup": 30, "torch": 63, "total": [7, 50, 53, 72], "touch": 80, "toward": [21, 42, 50, 70, 80], "traceabl": 71, "track": [3, 5, 21, 24, 27, 32, 54, 59, 67, 74, 76, 80], "tracker": 26, "tracking_cod": 21, "tracking_id": 21, "tract": [25, 59], "tractogram": [25, 28, 29, 55, 63, 77], "tractographi": [5, 11, 12, 17, 24, 29, 30, 54, 55], "tractoinferno": [55, 61, 63], "tractolearn": [55, 61, 63], "tradit": [33, 35], "traffic": 21, "train": [25, 35, 36, 40, 45, 48, 51, 55, 59, 63, 67, 69, 71, 73, 75, 77], "train_step": 40, "trainabl": [36, 45], "trajectori": 5, "transfer": [59, 61, 72], "transform": [26, 43, 57], "transform_img": 51, "transit": [54, 56, 80], "translat": 55, "transpos": [6, 63], "tratometri": 28, "travel": 17, "treat": [65, 69], "tri": [14, 18, 32, 40, 44, 49, 50, 62, 67, 70, 73, 75, 77], "triag": [54, 80], "trial": [62, 74], "trick": [30, 54, 63, 73, 77], "tricki": [61, 78], "trigger": [18, 20, 80], "trivial": 6, "trk": 57, "troubl": [58, 68, 72], "troubleshoot": [78, 80], "troublesom": 17, "true": [14, 19, 20, 21, 22, 73, 75, 78], "truli": [35, 79], "trust": 18, "truth": [7, 8, 15, 44, 46, 47, 50, 70], "try": [4, 9, 17, 18, 19, 20, 21, 26, 32, 44, 49, 50, 51, 52, 53, 58, 59, 61, 62, 63, 68, 70, 71, 73, 75, 76, 77], "tumor": 30, "tune": [4, 16, 30, 40, 43, 54, 56, 58, 60, 62, 65, 66, 68, 70, 72, 73, 74, 75], "tupl": 59, "turn": [32, 33], "tutori": [6, 17, 21, 24, 25, 26, 27, 33, 40, 45, 47, 49, 52, 53, 54, 74], "tweak": 40, "twitter": [20, 21], "two": [5, 7, 8, 10, 11, 15, 16, 26, 31, 35, 36, 39, 41, 43, 45, 51, 59, 62, 63, 67, 69, 70, 73, 75, 77, 80], "type": [6, 19, 20, 21, 25, 28, 29, 73, 77], "type_stub": 68, "typeerror": 70, "typic": 30, "typo": [44, 46], "u": [3, 4, 7, 11, 17, 20, 21, 26, 36, 39, 51, 56, 62, 63, 73], "ubuntu": [32, 46], "ui": [17, 24], "uij": 11, "uk": 4, "ul": 22, "ultim": [3, 17, 80], "umbrella": [24, 25, 28, 29], "unavail": 63, "uncertainti": 35, "uncondit": [39, 40], "under": [17, 18, 20, 21, 24, 25, 28, 29, 32, 40, 41, 57, 67, 80], "underestim": 15, "undergrad": [31, 32], "underli": [3, 75], "understand": [25, 27, 28, 32, 33, 34, 38, 47, 51, 56, 66, 71, 73, 74, 75, 76, 80], "understood": 33, "undertaken": 80, "undertook": 72, "undilut": 32, "unexpect": [6, 15, 40, 76], "unfortun": [16, 63, 76], "unibertsitatea": 55, "unifi": [26, 29, 30, 54, 80], "uniqu": [17, 21, 24, 30, 34, 72], "unit": [10, 16, 45, 53, 69, 75], "univers": [4, 8, 48], "unlik": 61, "unnecessari": [4, 8, 11, 53, 70, 80], "unoptim": 30, "unpars": 62, "unreduc": 40, "unring": 27, "unrol": [30, 54], "unsatisfactori": 45, "unseen": 36, "unsupervis": [24, 25, 71], "until": [16, 32, 58, 61, 62, 63, 64, 67, 69, 70, 71, 73, 75, 77, 80], "up": [18, 19, 20, 29, 56, 58, 60, 72, 74, 76, 78, 79, 80], "upcom": [1, 20, 66, 74], "updat": [1, 5, 6, 8, 16, 17, 18, 20, 21, 24, 27, 35, 45, 53, 55, 56, 57, 58, 62, 65, 66, 68, 70, 72, 74, 76, 79, 80], "update_document": [20, 21], "upgrad": 54, "upload": [18, 20, 21, 72], "upon": [17, 32, 48, 49, 50, 58, 60, 72, 80], "upper": [7, 12, 13, 15, 16], "upsampl": [39, 45, 63], "upsampling1d": 63, "upsampling2d": 39, "upstream": 6, "urdaibai": 73, "url": [19, 20, 21, 22, 72], "url_dir": [21, 22], "us": [3, 4, 5, 6, 8, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 32, 33, 34, 35, 36, 38, 39, 40, 41, 43, 45, 46, 48, 50, 53, 55, 56, 57, 59, 61, 62, 63, 64, 66, 67, 68, 69, 70, 73, 74, 80], "usabl": [60, 72, 76, 80], "usag": [6, 7, 11, 12, 16, 26, 57, 60, 61], "use_facebook": 21, "use_googleplu": 21, "use_og": 21, "use_title_tag": 21, "use_twitt": 21, "user": [3, 17, 19, 21, 24, 25, 28, 29, 30, 40, 53, 54, 60, 72, 79, 80], "usernam": 23, "usual": [32, 59, 67, 73, 74], "util": [18, 28, 35, 38, 46, 74, 80], "ux": 17, "v": [5, 10, 19, 32, 40, 63, 73], "v100": 40, "vae": [33, 39, 40, 51, 67], "vain": 40, "valabregu": [12, 13, 14], "valid": [7, 8, 11, 16, 60, 73], "valu": [3, 4, 7, 8, 9, 11, 14, 15, 16, 17, 19, 21, 30, 37, 40, 44, 46, 47, 50, 53, 55, 67, 69, 75], "valuabl": [18, 26, 72, 80], "valueerror": 32, "vanilla": [64, 67, 71, 73], "var": 80, "vari": [35, 73], "variabl": [4, 8, 38, 49, 50, 59, 71, 73, 75, 77, 80], "varianc": [51, 69], "variat": [35, 45, 64, 69, 73, 75], "variou": [30, 45, 54, 56, 60, 66, 70, 72, 79, 80], "vast": 30, "ve": [32, 35, 46, 47, 48, 51, 65, 66, 72, 74, 76, 78, 79, 80], "vector": [7, 11, 30, 32, 34, 35, 36, 42, 54, 75], "vectorquant": 45, "ventral": 51, "ventur": 31, "veri": [6, 9, 11, 12, 13, 17, 19, 21, 27, 31, 32, 40, 44, 58, 63, 64, 70, 71, 73, 75, 77], "verifi": [35, 53, 72], "versatil": 74, "version": [4, 6, 7, 8, 11, 14, 15, 16, 17, 18, 20, 21, 22, 26, 27, 29, 30, 32, 48, 60, 63, 71, 78, 79], "version_nam": [20, 21], "vertex": [24, 26], "vex": 46, "via": [25, 26, 29, 30, 54], "video": [19, 21, 24, 32, 35, 37, 74], "view": [12, 19, 21, 27, 30, 79], "vij": 11, "villalon": 17, "villal\u00f3n": 30, "vimeo": 17, "virtual": [5, 40], "visibl": [27, 30, 72, 80], "vision": [30, 31, 55], "visit": [20, 21], "visitor": 80, "visual": [3, 15, 16, 17, 18, 20, 21, 22, 24, 25, 26, 27, 30, 35, 40, 45, 51, 54, 63, 73, 75, 77, 78, 80], "vital": 47, "vivo": 4, "viz": [3, 17, 24, 80], "voigt": [46, 50], "voila": 31, "volum": [3, 7, 27, 43, 47, 51, 70, 74], "volumetr": [43, 51], "voxel": [3, 5, 7, 8, 11, 12, 13, 14, 16, 47, 50, 51, 52, 53, 70], "vq": [33, 39, 40], "vqave": 51, "vqvae": 51, "vstack": 32, "vtk": [3, 17, 24, 25, 28, 29, 30, 78], "wa": [4, 5, 6, 7, 8, 11, 12, 13, 14, 15, 16, 18, 19, 22, 23, 24, 31, 32, 34, 37, 38, 40, 41, 43, 44, 45, 46, 48, 49, 50, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 65, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 79, 80], "wachiou": [65, 79], "wai": [3, 6, 8, 11, 12, 17, 18, 20, 22, 24, 26, 30, 31, 37, 42, 52, 56, 57, 63, 64, 67, 71, 73, 75, 76, 77, 80], "wait": [11, 21], "walk": [72, 74, 76], "want": [4, 6, 17, 19, 22, 23, 25, 26, 30, 31, 32, 37, 54, 55, 64, 66, 69, 71, 73, 77, 80], "warn": [65, 80], "warning_for_keyword": [70, 80], "warp": 3, "wasn": [32, 44, 46, 66, 72, 76], "wast": 8, "watch": [17, 19], "water": [5, 16, 25, 70], "we": [3, 5, 7, 8, 11, 12, 13, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 32, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 50, 51, 52, 53, 54, 55, 56, 59, 61, 63, 67, 69, 72, 73, 75, 77, 79, 80], "wear": 8, "weather": 64, "web": [17, 18], "websit": [5, 8, 17, 18, 20, 21, 23, 26, 27, 33, 54, 72], "websitesect": [19, 20, 21], "week": [4, 5, 7, 8, 11, 12, 16, 19, 21, 22, 23, 56, 80], "weekli": [18, 19, 35, 75], "weigh": 8, "weight": [3, 5, 7, 8, 11, 13, 14, 16, 27, 35, 37, 40, 51, 57, 59, 61, 69, 71], "welcom": 26, "well": [5, 7, 16, 17, 21, 26, 27, 29, 30, 32, 33, 35, 40, 42, 43, 45, 46, 48, 50, 51, 53, 54, 58, 60, 63, 65, 66, 72, 74, 75, 78], "went": [22, 32, 42, 63, 73], "were": [6, 7, 8, 11, 13, 14, 15, 16, 21, 24, 27, 32, 36, 38, 40, 44, 46, 47, 48, 49, 50, 51, 53, 59, 62, 63, 69, 70, 72, 73, 74, 75, 76, 79, 80], "weren": [44, 47, 79], "what": [5, 6, 11, 17, 31, 66, 74, 76, 80], "whatev": 66, "when": [4, 6, 7, 9, 10, 11, 14, 15, 17, 18, 21, 24, 32, 35, 40, 47, 49, 50, 53, 54, 55, 58, 62, 63, 67, 68, 70, 72, 73, 74, 75, 80], "whenev": [18, 20, 21], "where": [4, 6, 10, 11, 13, 15, 16, 18, 19, 21, 39, 44, 45, 47, 51, 62, 63, 64, 67, 68, 70, 71, 76, 80], "wherea": [37, 39, 40, 43, 45, 51, 63], "whether": [55, 73], "which": [3, 4, 5, 7, 8, 10, 11, 12, 13, 14, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 34, 40, 41, 42, 43, 44, 46, 47, 50, 53, 54, 55, 58, 59, 61, 62, 63, 64, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 79, 80], "while": [3, 7, 10, 14, 15, 17, 24, 25, 27, 28, 29, 30, 31, 32, 34, 35, 36, 38, 40, 42, 44, 46, 49, 50, 52, 53, 54, 55, 61, 62, 64, 66, 70, 71, 72, 74, 77, 78, 79, 80], "whirlwind": 62, "white": [3, 5, 7, 8, 11, 12, 16, 17, 25, 28, 29, 30, 45], "who": [53, 54, 55, 56, 78, 79], "whole": [18, 32, 36, 58, 59, 75], "wholeheartedli": 18, "whoop": 32, "whose": 78, "why": [6, 55, 57, 68, 80], "wide": 9, "wider": [16, 72], "widespread": 75, "widget": [17, 24], "width": [19, 39], "willing": 6, "window": [21, 40], "wip": 55, "within": [12, 16, 21, 47, 52, 63, 74, 78, 80], "without": [4, 17, 20, 24, 27, 36, 40, 48, 51, 63, 64, 65, 66, 77, 80], "wl": [7, 70], "wls_fit_tensor": 68, "wm": 30, "woke": 32, "won": [50, 77], "wonder": 31, "word": [3, 32, 53, 73], "work": [3, 4, 5, 6, 7, 8, 11, 12, 15, 16, 18, 19, 21, 23, 24, 25, 26, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 45, 46, 47, 48, 51, 52, 53, 54, 55, 56, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 70, 72, 73, 74, 75, 76, 77, 78, 79], "workaround": 63, "workflow": [24, 30, 54, 56, 74, 76, 80], "world": [27, 32], "worldwid": [12, 13, 16, 18, 30], "worm": 75, "worri": [61, 73], "would": [3, 17, 19, 24, 25, 26, 28, 29, 30, 31, 32, 36, 41, 42, 45, 46, 51, 54, 60, 62, 63, 64, 66, 67, 73, 75, 77, 78], "wouldn": 42, "wrap": [51, 67, 79], "wrapper": [19, 70], "wreck": 32, "write": [16, 19, 25, 26, 27, 28, 41, 42, 47, 49, 53, 55, 56, 58, 64, 77], "written": [4, 17, 19, 24, 47, 60], "wrong": [44, 80], "wrote": [19, 27, 47, 49, 57], "www": [19, 21], "x": [7, 10, 11], "x11": 40, "y": [10, 32, 80], "yai": 22, "ye": [32, 51, 75], "yeah": 67, "year": [3, 16, 17, 24, 25, 26, 28, 29, 30, 31, 32, 54, 55, 72, 80], "yeatmanlab": 74, "yellow": [16, 75], "yesterdai": 59, "yet": [32, 42, 45, 48, 51, 57, 68, 72, 78, 80], "yield": [45, 61], "you": [1, 3, 4, 5, 6, 8, 11, 13, 16, 17, 18, 20, 21, 23, 24, 25, 26, 28, 29, 30, 32, 36, 42, 54, 56, 58, 60, 62, 63, 64, 65, 66, 67, 68, 69, 70, 72, 73, 74, 75, 76, 77, 78, 79, 80], "your": [1, 6, 18, 23, 24, 25, 26, 28, 29, 30, 32, 54, 66, 79], "your_branch": 6, "youtub": [19, 37, 74], "youtube_embed_url": 19, "z": [7, 10, 73, 75], "z0": 19, "za": 19, "zeppelin": 24, "zero": [7, 11, 15, 44, 46, 47], "zone": 31, "zucchelli": 24, "\u03b1": 11}, "titles": ["Blog", "Calendar", "<no title>", "Google Summer of Code 2015 Announcement", "First post after acceptance! =)", "Time to start mapping brain connections and looking to brain properties in vivo", "First report (1st week of coding, challenges and ISMRM conference)", "Progress Report (DKI simulations merged and DKI real data fitted)", "Mid-Term Summary", "Artifacts in Dipy\u2019s sample data Sherbrooke\u2019s 3 shells", "Perpendicular directions samples relative to a given vector", "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation", "Progress Report on Diffusion Kurtosis Imaging (DKI) Implementation", "Further improvements on the diffusion standard statistics", "Attempt to further improve the diffusion standard statistics", "Start wrapping up - Test singularities of kurtosis statistics", "Final Project Report", "How to become a part of DIPY\u2019s Google Summer of Code 2016", "Google Summer of Code with Dipy", "Google Summer of Code Progress June 10", "Google Summer of Code Progress June 24", "Google Summer of Code Progress July 22", "Google Summer of Code Progress August 7", "Google Summer of Code Progress August 19", "Google Summer of Code 2018", "Google Summer of Code 2020", "Google Season of Docs 2020", "GSoD: High-level restructuring and end-user focus", "Google Summer of Code 2021", "Google Summer of Code 2022", "Google Summer of Code 2023", "Journey of GSOC application & acceptance : Week 0", "Community Bonding and Week 1 Insights", "Community bonding and Project kickstart : Week 1", "Signal Creation & Paper Research: Week2 Discoveries", "Deep Dive into VQ-VAE : Week 2", "VQ-VAE results and study on Diffusion models : Week 3", "CTI Simulation and QTI tutorial : Week 3", "Re-Engineering Simulation Codes with the QTI Model and Design Matrix", "Diffusion research continues: Week 4", "Carbonate Account Setup, Experiment, Debug and Repeat: Week 5", "Design Matrix Implementation and Coding with PEP8: Week 5", "Creating signal_predict Method: Testing Signal Generation", "Diffusion Model results on pre-trained VQVAE latents of NFBS MRI Dataset: Week 6 & Week 7", "Modifying Test Signal Generation", "VQVAE MONAI models & checkerboard artifacts: Week 8 & Week 9", "Generating Fit Functions : Week 8 & 9", "Adding Tests : Week 10", "Carbonate issues, GPU availability, Tensorflow errors: Week 10 & Week 11", "Making the Tests Work : Week 11", "Week12: Making Test Functions Work", "Finalized experiments using both datasets: Week 12 & Week13", "Writing Tests & Making Documentation: Week 13", "Doing Final Touch-Ups: Week 14", "Google Summer of Code 2024", "Community Bonding Period Summary and first impressions", "My Journey Begins: Community Bonding Period with DIPY", "First Week into GSoC 2024: Building the AutoEncoder, writing the training loop", "My Journey Continues: Week 1 Progress with DIPY", "Second Week into GSoC 2024: Refactoring the AutoEncoder, preliminary results", "My Journey Continues: Week 2 Progress with DIPY", "Third Week into GSoC 2024: Replicating training parameters, approaching replication", "My Journey Continues: Week 3 Progress with DIPY", "Week 4 into GSoC 2024: Weight transfer experiments, hardships, and results!", "Week 5 into GSoC 2024: Vacation, starting with the conditional AutoEncoder", "My Journey Continues: Week 4 Progress with DIPY", "My Journey Continues: Week 5 Progress with DIPY", "Week 6 into GSoC 2024: Stuck with the Variational AutoEncoder, problems with Keras", "My Journey Continues: Week 6 Progress with DIPY", "Week 7 into GSoC 2024: Starting to see the light at the end of the VAE", "My Journey Continues: Week 7 Progress with DIPY", "Week 8 into GSoC 2024: Further advances with the VAE model", "My Journey Continues: Week 8 Progress with DIPY", "Week 9 into GSoC 2024: The Conditional VAE implementation", "My Journey Continues: Week 9 Progress with DIPY", "Week 10 into GSoC 2024: Validating the conditional VAE results", "My Journey Continues: Week 10 Progress with DIPY", "Week 11 into GSoC 2024: The Adversarial AutoEncoder", "My Journey Continues: Week 11 Progress with DIPY", "My Journey Continues: Week 12 Progress with DIPY", "Google Summer of Code Final Work Product"], "titleterms": {"": [7, 9, 10, 17, 20, 21, 23, 24, 25, 28, 29, 30, 54, 56], "0": 31, "1": [6, 7, 11, 26, 30, 32, 33, 54, 56, 58, 72, 80], "10": [19, 47, 48, 75, 76], "11": [48, 49, 72, 77, 78], "12": [51, 79], "13": 52, "14": 53, "19": 23, "1st": 6, "2": [6, 7, 11, 26, 30, 35, 54, 60, 72, 80], "20": 26, "2015": [3, 12], "2016": 17, "2018": 24, "2020": [25, 26], "2021": 28, "2022": 29, "2023": 30, "2024": [54, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "21": 72, "22": 21, "24": 20, "2d": 80, "3": [7, 9, 30, 36, 37, 54, 62, 72, 80], "4": [30, 39, 54, 63, 65], "5": [30, 40, 41, 54, 64, 66], "50": 72, "53": 72, "6": [30, 43, 54, 67, 68], "7": [22, 30, 43, 69, 70], "8": [45, 46, 71, 72], "9": [45, 46, 73, 74], "A": [29, 66], "And": 23, "The": [32, 56, 73, 77], "about": [26, 32, 55], "abstract": 80, "acceler": 30, "accept": [4, 31], "accomplish": 8, "account": 40, "across": 62, "ad": [47, 72, 80], "add": [29, 30, 54], "addit": 80, "address": 79, "advanc": [11, 12, 71], "adversari": 77, "advic": [24, 25, 28, 29, 30, 54], "after": [4, 6], "ai": 54, "algorithm": [10, 29, 30, 54], "along": 30, "an": 30, "analysi": 30, "analyt": [11, 21], "announc": 3, "anywher": [32, 34, 35, 37, 38, 40, 42, 44, 45, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "ap": 30, "app": 23, "applic": [31, 74, 76, 78], "approach": 61, "approxim": 11, "ar": [26, 56], "argument": [56, 76, 79, 80], "artifact": [9, 45], "atla": 28, "attempt": 14, "august": [22, 23], "autoencod": [57, 59, 64, 67, 77], "avail": 48, "b": 80, "backend": 19, "base": [11, 12, 16, 25, 28], "becom": [17, 24, 25, 28, 29, 30, 54], "befor": 4, "begin": 56, "benefit": 80, "between": 11, "biolog": [7, 16], "blog": [0, 65, 72, 80], "blogpost": 27, "bond": [18, 32, 33, 55, 56], "both": 51, "brain": 5, "bug": 60, "build": [56, 57], "bundl": 28, "busi": 76, "c": 80, "cach": 21, "calendar": 1, "carbon": [40, 48], "challeng": [6, 27, 60, 62, 65, 66, 68, 70, 72, 74], "checkerboard": 45, "class": 80, "cli": 27, "code": [3, 4, 6, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 29, 30, 38, 41, 54, 80], "codebas": 54, "come": [32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 48, 49, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "command": 27, "commun": [18, 32, 33, 55, 56, 58], "comparison": 11, "complet": [12, 80], "comprehens": 60, "conclus": [79, 80], "condit": [64, 73, 75], "confer": 6, "connect": 5, "consist": 27, "contact": 26, "content": 20, "continu": [39, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79], "contribut": 65, "correct": 30, "correl": 30, "creat": [26, 30, 42, 78], "creation": [28, 34, 79], "cti": 37, "cuda": 54, "current": [27, 80], "d": 80, "dai": 32, "data": [7, 9, 30], "dataset": [43, 51], "debug": 40, "decor": [56, 58, 60, 62, 65, 68, 70], "deep": 35, "defin": 7, "demonstr": 62, "deploy": 79, "descript": 27, "design": [38, 41], "detail": [19, 20, 26, 80], "develop": [7, 19, 26, 27], "dicom": 25, "did": [18, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "difficulti": [60, 62, 65, 68, 70, 72, 74], "diffus": [6, 11, 12, 13, 14, 36, 39, 43, 54], "dipi": [7, 9, 17, 18, 24, 25, 26, 27, 28, 29, 30, 54, 55, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "dipy_horizon": 54, "direct": [10, 11, 12, 16], "discoveri": 34, "dispers": 30, "distort": 30, "dive": 35, "django": 23, "dki": [7, 11, 12, 16], "do": [47, 50, 53], "doc": 26, "docker": [74, 78, 80], "dockerfil": 79, "docstr": 26, "doctest": 26, "document": [21, 26, 27, 52, 60], "done": 27, "dti": 28, "end": [26, 27, 69], "engag": 58, "engin": [21, 38], "enhanc": [56, 72], "error": 48, "estim": [11, 12, 16], "expand": 58, "experi": [40, 51, 63], "extend": [25, 28, 29], "extra": 8, "far": [19, 20, 21, 22, 56, 58], "fiber": [11, 12, 16, 30], "file": 25, "final": [16, 51, 53, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79, 80], "first": [4, 6, 8, 55, 57], "fit": [7, 46], "fix": [27, 60, 65, 68, 70, 76, 78, 79], "focu": [26, 27], "foundat": 56, "framework": 11, "frontend": 20, "function": [7, 10, 11, 15, 46, 50, 60], "furi": 26, "further": [13, 14, 71], "futur": [11, 80], "gain": 16, "galleri": 22, "gener": [30, 42, 44, 46], "get": [1, 32, 34, 35, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "github": 23, "given": 10, "googl": [3, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 28, 29, 30, 54, 80], "gpu": [29, 48], "gratitud": 79, "gsoc": [16, 19, 31, 32, 57, 59, 61, 63, 64, 67, 69, 71, 72, 73, 75, 77, 80], "gsod": [26, 27], "guid": 26, "hardship": 63, "hei": 23, "high": [26, 27], "homepag": 27, "horizon": [25, 28, 29, 30], "hous": 76, "how": [17, 18, 24, 25, 28, 29, 30, 54, 55], "i": [12, 18, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "idea": [26, 30, 54], "imag": [11, 12, 30, 72, 78, 80], "implement": [11, 12, 29, 30, 41, 58, 62, 65, 66, 73, 80], "import": 7, "impress": 55, "improv": [11, 13, 14, 27, 80], "inform": [29, 30, 54], "insight": 32, "integr": [21, 58, 62, 80], "interfac": 27, "intro": 32, "introduct": [24, 25, 28, 29, 30, 54], "involv": 55, "ismrm": 6, "issu": [48, 54, 72], "i\u00f1igo": 55, "journei": [19, 31, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "juli": 21, "june": [19, 20], "kera": 67, "keyword": [56, 76, 79, 80], "kickstart": 33, "kurtosi": [11, 12, 15], "last": 12, "latent": 43, "lazi": [58, 60, 62, 66, 68, 70, 80], "learn": [25, 27, 74], "level": [26, 27], "light": 69, "line": 27, "load": [58, 60, 62, 66, 68, 70, 80], "look": 5, "loop": 57, "machin": 25, "magnet": 30, "main": 7, "make": [18, 49, 50, 52], "manag": 20, "map": 5, "master": 7, "mathemat": 11, "matrix": [38, 41], "mean": 11, "measur": 16, "medium": 27, "mentor": 27, "merg": 7, "method": [16, 42], "mid": 8, "migrat": [72, 80], "minor": 27, "miss": [26, 79], "ml": 54, "model": [36, 38, 43, 45, 71], "modern": 54, "modifi": 44, "modul": [7, 16, 62], "monai": 45, "more": 19, "move": 76, "mri": [7, 25, 28, 30, 43, 54], "mutual": [29, 30, 54], "my": [56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79], "myself": 32, "new": 19, "next": [6, 7, 8, 20, 21, 22, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79, 80], "nfb": 43, "non": [29, 30, 54], "note": 4, "now": 12, "object": 80, "odf": 11, "onli": [56, 80], "open": 32, "optim": [21, 30, 54], "order": 6, "org": 72, "organ": [27, 72, 80], "orient": 30, "our": 26, "output": 27, "overview": 18, "pa": 30, "page": [22, 72, 80], "paper": 34, "parallel": 29, "paramet": [7, 61], "part": [17, 24, 25, 28, 29, 30, 54], "peer": 65, "pep8": 41, "perform": [11, 15], "period": [4, 18, 55, 56], "perpendicular": 10, "person": 4, "phd": [74, 76, 78], "piesno": 14, "pipelin": 28, "popul": 28, "post": [4, 19, 28, 72, 80], "pr": [65, 68, 70, 76, 78], "pre": 43, "preliminari": 59, "prepar": [66, 79], "problem": [6, 67], "problemat": 15, "process": [28, 54], "product": 80, "progress": [7, 8, 11, 12, 19, 20, 21, 22, 23, 56, 58, 60, 62, 65, 66, 68, 70, 72, 74, 76, 78, 79, 80], "project": [8, 16, 17, 18, 24, 25, 26, 27, 28, 29, 30, 33, 54, 56, 79, 80], "properti": 5, "propos": [8, 80], "public": 19, "python": [7, 11, 29, 30], "qti": [37, 38], "radial": 11, "re": 38, "real": 7, "rebas": 6, "reconstruct": [6, 7, 16], "refactor": 59, "refin": [58, 60], "reflect": 79, "registr": [25, 29, 30, 54, 80], "rel": 10, "repeat": 40, "replic": 61, "report": [6, 7, 11, 12, 16], "repositori": 7, "research": [34, 39, 60], "reson": 30, "restructur": [26, 27], "result": [11, 36, 43, 59, 63, 75], "review": 65, "right": 6, "rigid": [29, 30, 54], "role": 56, "sampl": [9, 10], "search": 21, "season": 26, "second": 59, "section": 19, "see": 69, "separ": 23, "setup": 40, "shell": 9, "sherbrook": 9, "short": 27, "sidebar": [72, 80], "signal": [34, 42, 44], "signal_predict": 42, "simul": [7, 16, 37, 38], "singular": 15, "skill": 16, "small": 27, "so": [18, 19, 20, 21, 22, 56, 58], "solut": 11, "solv": 54, "some": 19, "sourc": 32, "span": 80, "specif": 28, "speed": 11, "standard": [13, 14], "start": [5, 15, 64, 69], "stat": 23, "state": 27, "statist": [11, 12, 13, 14, 15], "statu": 80, "step": [6, 7, 8, 12, 66, 79, 80], "stuck": [32, 34, 35, 37, 38, 40, 42, 44, 45, 46, 47, 48, 49, 51, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "student": 4, "studi": 36, "submit": 78, "summari": [8, 16, 55], "summer": [3, 12, 17, 18, 19, 20, 21, 22, 23, 24, 25, 28, 29, 30, 54, 80], "support": 25, "suscept": 30, "synthet": 30, "system": 20, "task": 56, "technic": [26, 27], "templat": 28, "tensor": [6, 30], "tensorflow": 48, "term": 8, "test": [15, 42, 44, 47, 49, 50, 52, 60, 62], "thi": [32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "thing": [46, 47, 50], "third": 61, "thought": [19, 56, 58, 60, 62, 66, 68, 70, 72, 74, 76, 78, 79], "time": 5, "timelin": 80, "titl": 80, "topup": 29, "touch": 53, "tract": [28, 30], "tractographi": 28, "train": [43, 57, 61], "transfer": 63, "treat": 28, "tutori": [22, 37, 76, 78, 79, 80], "unexpect": 66, "up": [15, 32, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 48, 49, 51, 52, 53, 55, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "updat": [26, 60, 78], "us": [7, 30, 51, 54], "usag": 80, "user": [26, 27], "vacat": 64, "vae": [35, 36, 69, 71, 73, 75], "valid": 75, "variat": 67, "vector": 10, "viewer": 30, "visual": [23, 28, 29], "vivo": 5, "vq": [35, 36], "vqvae": [43, 45], "wa": 27, "websit": [19, 80], "week": [6, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78, 79], "week12": 50, "week13": 51, "week2": 34, "weekli": 80, "weight": 63, "what": [20, 21, 22, 26, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 55, 56, 57, 59, 61, 63, 64, 67, 69, 71, 73, 75, 77], "wiki": [72, 80], "work": [27, 49, 50, 80], "workflow": [25, 27, 28, 29], "wrap": 15, "write": [52, 57], "writer": [26, 27]}}) \ No newline at end of file