From f394c8e5d59c55af1ebd530d7e19fdce0ced3ce3 Mon Sep 17 00:00:00 2001
From: Dave Tang <davetingpongtang@gmail.com>
Date: Mon, 25 Mar 2024 16:05:34 +0900
Subject: [PATCH] Coverage in windows

---
 learning_bam_file.Rmd | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/learning_bam_file.Rmd b/learning_bam_file.Rmd
index 5592f1a..e708021 100644
--- a/learning_bam_file.Rmd
+++ b/learning_bam_file.Rmd
@@ -554,6 +554,13 @@ gunzip -c ERR188273.per-base.bed.gz | head
 cat ERR188273.mosdepth.summary.txt
 ```
 
+Coverage in using a 500 bp window.
+
+```{bash engine.opts='-l'}
+mosdepth -n --fast-mode --by 500 ERR188275_500 eg/ERR188273_chrX.bam
+gunzip -c ERR188275_500.regions.bed.gz | head
+```
+
 ## Stargazers over time
 
 [![Stargazers over time](https://starchart.cc/davetang/learning_bam_file.svg)](https://starchart.cc/davetang/learning_bam_file)