diff --git a/docs/run-cluster.md b/docs/run-cluster.md index 76fb98c..9b5bb8d 100644 --- a/docs/run-cluster.md +++ b/docs/run-cluster.md @@ -47,3 +47,10 @@ divvy init $DIVCFG ``` Next, you edit that config file to add in any compute packages you need. `PEPATAC` will then give you access to any of your custom packages with `looper --package `. For complete instructions on how to create a custom compute package, read [how to configure divvy](https://divvy.databio.org/en/latest/configuration/). + +Alternatively, you can specify compute parameters via the CLI: + +```console +looper run examples/test_project/test_config_refgenie.yaml -d \ + --package slurm --compute PARTITION="your_cluster_partition_name" +``` \ No newline at end of file