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\ No newline at end of file diff --git a/_static/basic.css b/_static/basic.css index 30fee9d0f..f316efcb4 100644 --- a/_static/basic.css +++ b/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/_static/classic.css b/_static/classic.css index 9ad992b8a..55301478f 100644 --- a/_static/classic.css +++ b/_static/classic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- classic theme. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/_static/doctools.js b/_static/doctools.js index d06a71d75..4d67807d1 100644 --- a/_static/doctools.js +++ b/_static/doctools.js @@ -4,7 +4,7 @@ * * Base JavaScript utilities for all Sphinx HTML documentation. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/_static/language_data.js b/_static/language_data.js index 250f5665f..367b8ed81 100644 --- a/_static/language_data.js +++ b/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -13,7 +13,7 @@ var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"]; -/* Non-minified version is copied as a separate JS file, is available */ +/* Non-minified version is copied as a separate JS file, if available */ /** * Porter Stemmer diff --git a/_static/searchtools.js b/_static/searchtools.js index 7918c3fab..92da3f8b2 100644 --- a/_static/searchtools.js +++ b/_static/searchtools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for the full-text search. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => { .then((data) => { if (data) listItem.appendChild( - Search.makeSearchSummary(data, searchTerms) + Search.makeSearchSummary(data, searchTerms, anchor) ); // highlight search terms in the summary if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js @@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => { ); else Search.status.innerText = _( - `Search finished, found ${resultCount} page(s) matching the search query.` - ); + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); }; const _displayNextItem = ( results, @@ -137,6 +137,22 @@ const _displayNextItem = ( // search finished, update title and status message else _finishSearch(resultCount); }; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; /** * Default splitQuery function. Can be overridden in ``sphinx.search`` with a @@ -160,13 +176,26 @@ const Search = { _queued_query: null, _pulse_status: -1, - htmlToText: (htmlString) => { + htmlToText: (htmlString, anchor) => { const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() }); + for (const removalQuery of [".headerlinks", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content const docContent = htmlElement.querySelector('[role="main"]'); - if (docContent !== undefined) return docContent.textContent; + if (docContent) return docContent.textContent; + console.warn( - "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template." + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." ); return ""; }, @@ -239,16 +268,7 @@ const Search = { else Search.deferQuery(query); }, - /** - * execute search (requires search index to be loaded) - */ - query: (query) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - const allTitles = Search._index.alltitles; - const indexEntries = Search._index.indexentries; - + _parseQuery: (query) => { // stem the search terms and add them to the correct list const stemmer = new Stemmer(); const searchTerms = new Set(); @@ -284,16 +304,32 @@ const Search = { // console.info("required: ", [...searchTerms]); // console.info("excluded: ", [...excludedTerms]); - // array of [docname, title, anchor, descr, score, filename] - let results = []; + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + _removeChildren(document.getElementById("search-progress")); - const queryLower = query.toLowerCase(); + const queryLower = query.toLowerCase().trim(); for (const [title, foundTitles] of Object.entries(allTitles)) { - if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { for (const [file, id] of foundTitles) { let score = Math.round(100 * queryLower.length / title.length) - results.push([ + normalResults.push([ docNames[file], titles[file] !== title ? `${titles[file]} > ${title}` : title, id !== null ? "#" + id : "", @@ -308,46 +344,47 @@ const Search = { // search for explicit entries in index directives for (const [entry, foundEntries] of Object.entries(indexEntries)) { if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { - for (const [file, id] of foundEntries) { - let score = Math.round(100 * queryLower.length / entry.length) - results.push([ + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ docNames[file], titles[file], id ? "#" + id : "", null, score, filenames[file], - ]); + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } } } } // lookup as object objectTerms.forEach((term) => - results.push(...Search.performObjectSearch(term, objectTerms)) + normalResults.push(...Search.performObjectSearch(term, objectTerms)) ); // lookup as search terms in fulltext - results.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); // let the scorer override scores with a custom scoring function - if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item))); - - // now sort the results by score (in opposite order of appearance, since the - // display function below uses pop() to retrieve items) and then - // alphabetically - results.sort((a, b) => { - const leftScore = a[4]; - const rightScore = b[4]; - if (leftScore === rightScore) { - // same score: sort alphabetically - const leftTitle = a[1].toLowerCase(); - const rightTitle = b[1].toLowerCase(); - if (leftTitle === rightTitle) return 0; - return leftTitle > rightTitle ? -1 : 1; // inverted is intentional - } - return leftScore > rightScore ? 1 : -1; - }); + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; // remove duplicate search results // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept @@ -361,7 +398,12 @@ const Search = { return acc; }, []); - results = results.reverse(); + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); // for debugging //Search.lastresults = results.slice(); // a copy @@ -466,14 +508,18 @@ const Search = { // add support for partial matches if (word.length > 2) { const escapedWord = _escapeRegExp(word); - Object.keys(terms).forEach((term) => { - if (term.match(escapedWord) && !terms[word]) - arr.push({ files: terms[term], score: Scorer.partialTerm }); - }); - Object.keys(titleTerms).forEach((term) => { - if (term.match(escapedWord) && !titleTerms[word]) - arr.push({ files: titleTerms[word], score: Scorer.partialTitle }); - }); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } } // no match but word was a required one @@ -496,9 +542,8 @@ const Search = { // create the mapping files.forEach((file) => { - if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1) - fileMap.get(file).push(word); - else fileMap.set(file, [word]); + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); }); }); @@ -549,8 +594,8 @@ const Search = { * search summary for a given text. keywords is a list * of stemmed words. */ - makeSearchSummary: (htmlText, keywords) => { - const text = Search.htmlToText(htmlText); + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); if (text === "") return null; const textLower = text.toLowerCase(); diff --git a/_static/sidebar.js b/_static/sidebar.js index c5e2692c4..f28c20689 100644 --- a/_static/sidebar.js +++ b/_static/sidebar.js @@ -16,7 +16,7 @@ * Once the browser is closed the cookie is deleted and the position * reset to the default (expanded). * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/formats.html b/formats.html index 145b7b425..983aeaf34 100644 --- a/formats.html +++ b/formats.html @@ -7,10 +7,10 @@ Formats (datascience.formats) — datascience 0.17.6 documentation - + - + @@ -247,7 +247,7 @@

This Page

rel="nofollow">Show Source - + @@ -282,7 +282,7 @@

Navigation

\ No newline at end of file diff --git a/genindex.html b/genindex.html index ff8df99e8..b038d78ee 100644 --- a/genindex.html +++ b/genindex.html @@ -6,10 +6,10 @@ Index — datascience 0.17.6 documentation - + - + @@ -591,7 +591,7 @@

W

@@ -620,7 +620,7 @@

Navigation

\ No newline at end of file diff --git a/index.html b/index.html index 8a362a2c0..b90d9e4ec 100644 --- a/index.html +++ b/index.html @@ -7,12 +7,14 @@ Welcome to datascience’s documentation! — datascience 0.17.6 documentation - + - + + + @@ -47,7 +49,7 @@

Welcome to datascience’s documentation!

0.17.6

Date:
-

Mar 14, 2024

+

Jun 04, 2024

The datascience package was written for use in Berkeley’s DS 8 course and @@ -120,7 +122,7 @@

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rel="nofollow">Show Source - + @@ -152,7 +154,7 @@

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\ No newline at end of file diff --git a/maps.html b/maps.html index fd3815a0c..54735ec56 100644 --- a/maps.html +++ b/maps.html @@ -7,10 +7,10 @@ Maps (datascience.maps) — datascience 0.17.6 documentation - + - + @@ -432,7 +432,7 @@

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rel="nofollow">Show Source - + @@ -467,7 +467,7 @@

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\ No newline at end of file diff --git a/predicates.html b/predicates.html index c72cbf167..1f6fbd02b 100644 --- a/predicates.html +++ b/predicates.html @@ -7,10 +7,10 @@ Predicates (datascience.predicates) — datascience 0.17.6 documentation - + - + @@ -320,7 +320,7 @@

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rel="nofollow">Show Source - + @@ -355,7 +355,7 @@

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\ No newline at end of file diff --git a/py-modindex.html b/py-modindex.html index 44fc75e52..fbbc98c17 100644 --- a/py-modindex.html +++ b/py-modindex.html @@ -6,10 +6,10 @@ Python Module Index — datascience 0.17.6 documentation - + - + @@ -84,7 +84,7 @@

Python Module Index

@@ -113,7 +113,7 @@

Navigation

\ No newline at end of file diff --git a/reference-nb/datascience-reference.html b/reference-nb/datascience-reference.html index 40ebf45d2..2288284f0 100644 --- a/reference-nb/datascience-reference.html +++ b/reference-nb/datascience-reference.html @@ -7,11 +7,11 @@ Data 8 datascience Reference — datascience 0.17.6 documentation - + - + @@ -4192,7 +4192,7 @@

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\ No newline at end of file diff --git a/search.html b/search.html index 6b0226f76..437176a0c 100644 --- a/search.html +++ b/search.html @@ -6,11 +6,11 @@ Search — datascience 0.17.6 documentation - + - + @@ -18,8 +18,9 @@ - - + + + \ No newline at end of file diff --git a/searchindex.js b/searchindex.js index f35665a50..91027ea78 100644 --- a/searchindex.js +++ b/searchindex.js @@ -1 +1 @@ -Search.setIndex({"docnames": ["_autosummary/datascience.tables.Table.__init__", "_autosummary/datascience.tables.Table.append", "_autosummary/datascience.tables.Table.append_column", "_autosummary/datascience.tables.Table.apply", "_autosummary/datascience.tables.Table.as_html", "_autosummary/datascience.tables.Table.as_text", "_autosummary/datascience.tables.Table.bar", "_autosummary/datascience.tables.Table.barh", "_autosummary/datascience.tables.Table.bin", "_autosummary/datascience.tables.Table.boxplot", "_autosummary/datascience.tables.Table.column", 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-7,10 +7,10 @@ Tables (datascience.tables) — datascience 0.17.6 documentation - + - + @@ -357,7 +357,7 @@

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\ No newline at end of file diff --git a/tutorial.html b/tutorial.html index 2a2922a43..e1183a814 100644 --- a/tutorial.html +++ b/tutorial.html @@ -7,10 +7,10 @@ Start Here: datascience Tutorial — datascience 0.17.6 documentation - + - + @@ -448,17 +448,17 @@

Visualizing Data< In [47]: normal_data Out[47]: -data1 | data2 --1.20011 | 2.81614 -1.94625 | 1.98461 --2.23617 | 4.33198 -0.163808 | 4.7598 -2.13657 | 6.68041 --1.09672 | 5.5486 -0.5919 | 6.09641 -2.28616 | 5.60395 -2.61927 | 1.99552 -4.92661 | 8.06488 +data1 | data2 +1.82671 | 0.575557 +-0.111294 | 4.77468 +-0.527647 | -3.20745 +4.51506 | 0.852124 +4.59658 | 3.55468 +-0.410764 | 4.74999 +0.773757 | 7.00782 +4.83982 | 0.587711 +-2.05991 | 5.39061 +3.46965 | 2.40147 ... (90 rows omitted) @@ -510,17 +510,17 @@

Exportingto_df():

In [56]: normal_data
 Out[56]: 
-data1    | data2
--1.20011 | 2.81614
-1.94625  | 1.98461
--2.23617 | 4.33198
-0.163808 | 4.7598
-2.13657  | 6.68041
--1.09672 | 5.5486
-0.5919   | 6.09641
-2.28616  | 5.60395
-2.61927  | 1.99552
-4.92661  | 8.06488
+data1     | data2
+1.82671   | 0.575557
+-0.111294 | 4.77468
+-0.527647 | -3.20745
+4.51506   | 0.852124
+4.59658   | 3.55468
+-0.410764 | 4.74999
+0.773757  | 7.00782
+4.83982   | 0.587711
+-2.05991  | 5.39061
+3.46965   | 2.40147
 ... (90 rows omitted)
 
 # index = False prevents row numbers from appearing in the resulting CSV
@@ -634,8 +634,8 @@ 
An ExampleIn [73]: bootstrapped_diff_means[:10]
 Out[73]: 
-array([-1.77816171,  0.23773786, -1.50497738,  1.95732895, -1.18618462,
-       -2.90481588, -0.09267639, -0.90782028, -1.84637019,  0.3219617 ])
+array([ 1.80388805, -0.67214224, -1.15283758, -1.27664579, -0.44090985,
+       -0.94612185,  0.43169249, -0.59991468, -0.63643677, -0.09511404])
 
 In [74]: num_diffs_greater = (abs(bootstrapped_diff_means) > abs(observed_diff)).sum()
 
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\ No newline at end of file diff --git a/util.html b/util.html index 43b239c9e..c40f86508 100644 --- a/util.html +++ b/util.html @@ -7,10 +7,10 @@ Utility Functions (datascience.util) — datascience 0.17.6 documentation - + - + @@ -243,7 +243,7 @@

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