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.gitignore
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Inputs/BED
Inputs/BigBed
Inputs/FASTA
Inputs/Shuffled_FASTA
Programs/report/out_md/samples.md
Programs/report/out_md/samples.knitmeta.RDS
Programs/report/out_md/index.md
Programs/report/out_md/_site.yml
Programs/scikick.yml
Programs/report/out_html/index.html
Programs/report/out_html/samples.html
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db
history.txt
Programs/.snakemake/log/2023-01-20T162159.679785.snakemake.log
Programs/.snakemake/log/2023-01-20T162351.115280.snakemake.log
Programs/report/logs/synteny_blocks_logs.txt
Scikick/.snakemake/log/2023-01-19T153518.807740.snakemake.log
Programs/.snakemake/log/2023-01-20T162104.917777.snakemake.log
Programs/.snakemake/log/2023-01-20T162030.512230.snakemake.log
Programs/.snakemake/log/2023-01-20T162020.019585.snakemake.log
Tasks_notes
Programs/0.18703548733993.clean.pos
Programs/0.18703548733993.pos
Programs/0.18703548733993.tmp
Programs/0.485078522776352.clean.pos
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Programs/.snakemake/log/2023-01-29T175115.554124.snakemake.log
Programs/.snakemake/log/2023-01-29T172906.203588.snakemake.log
Programs/.snakemake/log/2023-01-23T213047.473544.snakemake.log
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Programs/.snakemake/log/2023-01-23T201901.878962.snakemake.log
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Programs/.snakemake/locks/0.input.lock
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Programs/report/out_md/synteny_blocks.md
Programs/report/logs/synteny_blocks_modified2_logs.txt
Programs/report/logs/perform_analysis_logs.txt
Programs/report/logs/index_logs.txt
Notes
Programs/Scikick/.snakemake/log/2023-02-11T205659.333684.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T205936.907098.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T210919.468488.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T212452.012227.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T213314.973317.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T213603.466892.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T221000.302396.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T215349.244370.snakemake.log
Programs/Scikick/.snakemake/incomplete/cmVwb3J0L291dF9tZC9zeW50ZW55X2Jsb2Nrc192MS4yLm1k
Programs/Scikick/.snakemake/log/2023-02-11T222036.155420.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T223009.624265.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T224022.855270.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T224058.896049.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T225102.057080.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T225213.634379.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T231622.467382.snakemake.log
Programs/Scikick/.snakemake/log/2023-02-11T232458.421599.snakemake.log
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Programs/Scikick/.snakemake/metadata/cmVwb3J0L291dF9tZC90Yng1X2FuYWx5c2lzX0lJX3RtcC5tZA==
.gitignore
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Synteny_Percentage_Plot-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Synteny_Chr_MM_Plot-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Synteny_Chr_DR-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Synteny_Chr_DR_Plot-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Range_Annotations_DR_Plot-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/PWM_Matches_All_Samples-1.png
Programs/Scikick/report/out_md/figure/tbx5_analysis_II/Peak_Annotations_MM_Plot-1.png
Programs/Scikick/report/out_md/tbx5_analysis_II.md
Programs/Scikick/report/out_md/index.md
Programs/Scikick/report/out_md/_site.yml
Programs/Scikick/report/logs/tbx5_analysis_II_logs.txt
Programs/Scikick/report/logs/synteny_blocks_v1.2_logs.txt
Programs/Scikick/report/logs/samples_logs.txt
Programs/Scikick/report/logs/index_logs.txt
Figures/PWM_matches_all.png