diff --git a/README.md b/README.md index 8112ec8..f454157 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ The goal of neonDivData is to provide cleaned NEON organismal data to facilitate biodiversity research. The authors of this R data package -have all spent lots of effort to clean NEON data for our own research; +have all spend lots of effort to clean NEON data for our own research; it makes the most sense to document such processes and provide the clean data product so that the large community can use them readily. This will save us time to dig into the extensive documenations of NEON data and to @@ -34,20 +34,20 @@ Available taxonomic groups and their brief summaries: knitr::kable(neonDivData::data_summary[, !names(neonDivData::data_summary) %in% c("sites", "data_package_id")]) ``` -| taxon\_group | n\_taxa | n\_sites | start\_date | end\_date | data\_package\_title | neon\_ecocomdp\_mapping\_method | original\_neon\_data\_product\_id | original\_neon\_data\_version | r\_object | variable\_names | units | -|:-------------------|--------:|---------:|:------------|:-----------|:--------------------------------------------------------------------------------------------|:--------------------------------|:----------------------------------|:------------------------------|:------------------------|:----------------------------------|:----------------------------------------------------------| -| ALGAE | 1946 | 33 | 2014-07-02 | 2019-07-15 | ALGAE from the NEON data product: Periphyton, seston, and phytoplankton collection | neon.ecocomdp.20166.001.001 | DP1.20166.001 | RELEASE-2021\|PROVISIONAL | data\_algae | cell density OR cells OR valves | cells/cm2 OR cells/mL | -| SMALL\_MAMMALS | 145 | 46 | 2013-06-19 | 2020-11-20 | SMALL\_MAMMALS from the NEON data product: Small mammal box trapping | neon.ecocomdp.10072.001.001 | DP1.10072.001 | RELEASE-2021\|PROVISIONAL | data\_small\_mammal | count | unique individuals per 100 trap nights per plot per month | -| PLANTS | 6197 | 47 | 2013-06-24 | 2020-10-07 | PLANTS from the NEON data product: Plant presence and percent cover | neon.ecocomdp.10058.001.001 | DP1.10058.001 | RELEASE-2021\|PROVISIONAL | data\_plant | percent cover OR presence absence | percent of plot area covered by taxon OR Unitless | -| BEETLES | 758 | 47 | 2013-07-03 | 2020-10-13 | BEETLES from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.001 | DP1.10022.001 | RELEASE-2021\|PROVISIONAL | data\_herp\_bycatch | abundance | count per trap day | -| HERPTILES | 128 | 41 | 2014-04-02 | 2020-09-29 | HERPTILES (bycatch) from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.002 | DP1.10022.001 | RELEASE-2021\|PROVISIONAL | data\_herp\_bycatch | abundance | count per trap day | -| MACROINVERTEBRATES | 1330 | 34 | 2014-07-01 | 2020-07-29 | MACROINVERTEBRATES from the NEON data product: Macroinvertebrate collection | neon.ecocomdp.20120.001.001 | DP1.20120.001 | RELEASE-2021\|PROVISIONAL | data\_macroinvertebrate | density | count per square meter | -| MOSQUITOES | 128 | 47 | 2014-04-09 | 2020-06-16 | MOSQUITOES from the NEON data product: Mosquitoes sampled from CO2 traps | neon.ecocomdp.10043.001.001 | DP1.10043.001 | RELEASE-2021\|PROVISIONAL | data\_mosquito | abundance | count per trap hour | -| BIRDS | 541 | 47 | 2015-05-13 | 2020-07-20 | BIRDS from the NEON data product: Breeding landbird point counts | neon.ecocomdp.10003.001.001 | DP1.10003.001 | RELEASE-2021\|PROVISIONAL | data\_bird | cluster size | count of individuals | -| TICKS | 18 | 41 | 2014-04-17 | 2019-03-18 | TICKS from the NEON data product: Ticks sampled using drag cloths | neon.ecocomdp.10093.001.001 | DP1.10093.001 | RELEASE-2021 | data\_tick | abundance | count per square meter | -| ZOOPLANKTON | 157 | 7 | 2014-07-02 | 2020-07-22 | ZOOPLANKTON from the NEON data product: Zooplankton collection | neon.ecocomdp.20219.001.001 | DP1.20219.001 | RELEASE-2021\|PROVISIONAL | data\_zooplankton | density | count per liter | -| TICK\_PATHOGENS | 12 | 15 | 2014-04-17 | 2018-10-03 | TICK\_PATHOGENS from the NEON data product: Tick-borne pathogen status | neon.ecocomdp.10092.001.001 | DP1.10092.001 | RELEASE-2021 | data\_tick\_pathogen | positivity rate | positive tests per pathogen per sampling event | -| FISH | 147 | 28 | 2016-03-29 | 2020-12-03 | FISH from the NEON data product: Fish electrofishing, gill netting, and fyke netting counts | neon.ecocomdp.20107.001.001 | DP1.20107.001 | NA | data\_fish | abundance | catch per unit effort | +| taxon_group | n_taxa | n_sites | start_date | end_date | data_package_title | neon_ecocomdp_mapping_method | original_neon_data_product_id | original_neon_data_version | original_neon_data_doi | r_object | variable_names | units | +|:-------------------|-------:|--------:|:-----------|:-----------|:--------------------------------------------------------------------------------------------|:-----------------------------|:------------------------------|:------------------------------|:-----------------------------------------------------------------------------|:-----------------------|:----------------|:----------------------------------------------------------| +| ALGAE | 2279 | 34 | 2014-07-02 | 2020-07-28 | ALGAE from the NEON data product: Periphyton, seston, and phytoplankton collection | neon.ecocomdp.20166.001.001 | DP1.20166.001 | RELEASE-2022\|PROVISIONAL | | data_algae | cell density | cells/cm2 OR cells/mL | +| SMALL_MAMMALS | 149 | 46 | 2013-06-19 | 2021-11-18 | SMALL_MAMMALS from the NEON data product: Small mammal box trapping | neon.ecocomdp.10072.001.001 | DP1.10072.001 | RELEASE-2022\|PROVISIONAL | | data_small_mammal | count | unique individuals per 100 trap nights per plot per month | +| PLANTS | 6544 | 47 | 2013-06-24 | 2021-10-13 | PLANTS from the NEON data product: Plant presence and percent cover | neon.ecocomdp.10058.001.001 | DP1.10058.001 | RELEASE-2022\|PROVISIONAL | | data_plant | percent cover | percent of plot area covered by taxon | +| FISH | 158 | 28 | 2016-03-29 | 2021-12-14 | FISH from the NEON data product: Fish electrofishing, gill netting, and fyke netting counts | neon.ecocomdp.20107.001.001 | DP1.20107.001 | RELEASE-2022\|PROVISIONAL\|NA | | data_fish | abundance | catch per unit effort | +| BEETLES | 768 | 47 | 2013-07-03 | 2021-10-05 | BEETLES from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.001 | DP1.10022.001 | RELEASE-2022\|PROVISIONAL | | data_herp_bycatch | abundance | count per trap day | +| MACROINVERTEBRATES | 1373 | 34 | 2014-07-01 | 2021-07-28 | MACROINVERTEBRATES from the NEON data product: Macroinvertebrate collection | neon.ecocomdp.20120.001.001 | DP1.20120.001 | RELEASE-2022\|PROVISIONAL | | data_macroinvertebrate | density | count per square meter | +| MOSQUITOES | 131 | 47 | 2014-04-09 | 2021-06-11 | MOSQUITOES from the NEON data product: Mosquitoes sampled from CO2 traps | neon.ecocomdp.10043.001.001 | DP1.10043.001 | RELEASE-2022\|PROVISIONAL | | data_mosquito | abundance | count per trap hour | +| BIRDS | 577 | 47 | 2013-06-05 | 2021-07-16 | BIRDS from the NEON data product: Breeding landbird point counts | neon.ecocomdp.10003.001.001 | DP1.10003.001 | RELEASE-2022\|PROVISIONAL | | data_bird | cluster size | count of individuals | +| TICKS | 19 | 46 | 2014-04-02 | 2021-11-18 | TICKS from the NEON data product: Ticks sampled using drag cloths | neon.ecocomdp.10093.001.001 | DP1.10093.001 | RELEASE-2022\|PROVISIONAL | | data_tick | abundance | count per square meter | +| ZOOPLANKTON | 166 | 7 | 2014-07-02 | 2021-07-21 | ZOOPLANKTON from the NEON data product: Zooplankton collection | neon.ecocomdp.20219.001.001 | DP1.20219.001 | RELEASE-2022\|PROVISIONAL | | data_zooplankton | density | count per liter | +| TICK_PATHOGENS | 12 | 16 | 2014-04-17 | 2020-10-01 | TICK_PATHOGENS from the NEON data product: Tick-borne pathogen status | neon.ecocomdp.10092.001.001 | DP1.10092.001 | RELEASE-2022 | | data_tick_pathogen | positivity rate | positive tests per pathogen per sampling event | +| HERPTILES | 136 | 41 | 2014-04-02 | 2021-10-06 | HERPTILES (bycatch) from the NEON data product: Ground beetles sampled from pitfall traps | neon.ecocomdp.10022.001.002 | DP1.10022.001 | RELEASE-2022\|PROVISIONAL | | data_herp_bycatch | abundance | count per trap day | ## Installation @@ -63,267 +63,273 @@ devtools::install_github("daijiang/neonDivData") ``` r neonDivData::neon_sites -#> # A tibble: 81 x 10 -#> `Site Name` siteID `Domain Name` domainID State Latitude Longitude -#> -#> 1 Little Roc… LIRO Great Lakes D05 WI 46.0 -89.7 -#> 2 West St Lo… WLOU Southern Roc… D13 CO 39.9 -106. -#> 3 Pu'u Maka'… PUUM Pacific Trop… D20 HI 19.6 -155. -#> 4 Flint River FLNT Southeast D03 GA 31.2 -84.4 -#> 5 McDiffett … MCDI Prairie Peni… D06 KS 38.9 -96.4 -#> 6 Lewis Run LEWI Mid-Atlantic D02 VA 39.1 -78.0 -#> 7 Blue River BLUE Southern Pla… D11 OK 34.4 -96.6 -#> 8 Teakettle … TECR Pacific Sout… D17 CA 37.0 -119. -#> 9 Lower Hop … HOPB Northeast D01 MA 42.5 -72.3 -#> 10 Martha Cre… MART Pacific Nort… D16 WA 45.8 -122. -#> # … with 71 more rows, and 3 more variables: `Site Type` , `Site -#> # Subtype` , `Site Host` +#> # A tibble: 81 × 10 +#> `Site Name` siteID `Domain Name` domainID State Latitude Longitude +#> +#> 1 Little Rock Lake LIRO Great Lakes D05 WI 46.0 -89.7 +#> 2 West St Louis Creek WLOU Southern Roc… D13 CO 39.9 -106. +#> 3 Pu'u Maka'ala Natural… PUUM Pacific Trop… D20 HI 19.6 -155. +#> 4 Flint River FLNT Southeast D03 GA 31.2 -84.4 +#> 5 McDiffett Creek MCDI Prairie Peni… D06 KS 38.9 -96.4 +#> 6 Lewis Run LEWI Mid-Atlantic D02 VA 39.1 -78.0 +#> 7 Blue River BLUE Southern Pla… D11 OK 34.4 -96.6 +#> 8 Teakettle 2 Creek TECR Pacific Sout… D17 CA 37.0 -119. +#> 9 Lower Hop Brook HOPB Northeast D01 MA 42.5 -72.3 +#> 10 Martha Creek MART Pacific Nort… D16 WA 45.8 -122. +#> # … with 71 more rows, and 3 more variables: `Site Type` , +#> # `Site Subtype` , `Site Host` neonDivData::neon_taxa -#> # A tibble: 11,507 x 4 -#> taxon_id taxon_name taxon_rank taxon_group -#> -#> 1 NEONDREX850… Heteroleibleinia sp. genus ALGAE -#> 2 BATRACHOSPF… Batrachospermaceae sp. family ALGAE -#> 3 NEONDREX550… Reimeria sinuata (Gregory) Kociolek et S… species ALGAE -#> 4 NEONDREX330… Eunotia rhomboidea Hustedt species ALGAE -#> 5 NEONDREX1038 Achnanthidium deflexum (Reimer) Kingston species ALGAE -#> 6 NEONDREX1036 Achnanthidium rivulare Potapova et Ponad… species ALGAE -#> 7 NEONDREX331… Eunotia muscicola var. tridentula Nörpel… variety ALGAE -#> 8 NEONDREX465… Navicula veneta Kützing species ALGAE -#> 9 NEONDREX483… Nitzschia acidoclinata Lange-Bertalot species ALGAE -#> 10 NEONDREX110… Encyonema ventricosum (C. A. Agardh) Gru… species ALGAE -#> # … with 11,497 more rows +#> # A tibble: 12,312 × 4 +#> taxon_id taxon_name taxon_rank taxon_group +#> +#> 1 NEONDREX48008 Nitzschia dissipata (Kützing) Grunow species ALGAE +#> 2 NEONDREX33183 Eunotia minor (Kützing) Grunow species ALGAE +#> 3 NEONDREX186008 Psammothidium subatomoides (Hustedt) B… species ALGAE +#> 4 NEONDREX1032 Achnanthidium latecephalum Kobayashi species ALGAE +#> 5 NEONDREX37311 Gomphonema parvulius (Lange-Bertalot e… species ALGAE +#> 6 NEONDREX155017 Planothidium frequentissimum (Lange-Be… species ALGAE +#> 7 NEONDREX62008 Stauroneis kriegeri Patrick species ALGAE +#> 8 NEONDREX172006 Staurosira construens var. venter (Ehr… variety ALGAE +#> 9 NEONDREX1036 Achnanthidium rivulare Potapova et Pon… species ALGAE +#> 10 NEONDREX48025 Nitzschia palea (Kützing) Smith species ALGAE +#> # … with 12,302 more rows neonDivData::neon_location -#> # A tibble: 4,162 x 8 -#> location_id siteID plotID latitude longitude elevation nlcdClass -#> -#> 1 ABBY_001.b… ABBY ABBY_… 45.8 -122. 303. evergree… -#> 2 ABBY_001.b… ABBY ABBY_… 45.8 -122. 303. evergree… -#> 3 ABBY_001.t… ABBY ABBY_… 45.8 -122. 298. evergree… -#> 4 ABBY_002.b… ABBY ABBY_… 45.7 -122. 638. grasslan… -#> 5 ABBY_002.b… ABBY ABBY_… 45.7 -122. 638. grasslan… -#> 6 ABBY_002.b… ABBY ABBY_… 45.7 -122. 638. grasslan… -#> 7 ABBY_002.m… ABBY ABBY_… 45.7 -122. 624. grasslan… -#> 8 ABBY_002.t… ABBY ABBY_… 45.7 -122. 651. grasslan… -#> 9 ABBY_003.b… ABBY ABBY_… 45.8 -122. 602. evergree… -#> 10 ABBY_003.b… ABBY ABBY_… 45.8 -122. 602. evergree… -#> # … with 4,152 more rows, and 1 more variable: aquaticSiteType +#> # A tibble: 4,259 × 8 +#> location_id siteID plotID latitude longitude elevation nlcdClass +#> +#> 1 ABBY_001.basePlot.brd ABBY ABBY_0… 45.8 -122. 303. evergree… +#> 2 ABBY_001.basePlot.div ABBY ABBY_0… 45.8 -122. 303. evergree… +#> 3 ABBY_001.tickPlot.tck ABBY ABBY_0… 45.8 -122. 298. evergree… +#> 4 ABBY_002.basePlot.bet ABBY ABBY_0… 45.7 -122. 638. grasslan… +#> 5 ABBY_002.basePlot.brd ABBY ABBY_0… 45.7 -122. 638. grasslan… +#> 6 ABBY_002.basePlot.div ABBY ABBY_0… 45.7 -122. 638. grasslan… +#> 7 ABBY_002.mammalGrid.mam ABBY ABBY_0… 45.7 -122. 624. grasslan… +#> 8 ABBY_002.tickPlot.tck ABBY ABBY_0… 45.7 -122. 651. grasslan… +#> 9 ABBY_003.basePlot.bet ABBY ABBY_0… 45.8 -122. 602. evergree… +#> 10 ABBY_003.basePlot.brd ABBY ABBY_0… 45.8 -122. 602. evergree… +#> # … with 4,249 more rows, and 1 more variable: aquaticSiteType neonDivData::data_algae -#> # A tibble: 90,224 x 24 -#> location_id siteID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Heterolei… genus -#> 2 HOPB.AOS.r… HOPB 2016-10-05 10:4… BATRACH… Batrachos… family -#> 3 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Reimeria … species -#> 4 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Eunotia r… species -#> 5 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Achnanthi… species -#> 6 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Achnanthi… species -#> 7 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Eunotia m… variety -#> 8 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Navicula … species -#> 9 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Nitzschia… species -#> 10 HOPB.AOS.r… HOPB 2016-10-05 10:4… NEONDRE… Encyonema… species -#> # … with 90,214 more rows, and 18 more variables: variable_name , -#> # value , unit , sampleCondition , +#> # A tibble: 114,340 × 25 +#> location_id siteID unique_sample_id observation_dateti… taxon_id taxon_name +#> +#> 1 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Nitzschia… +#> 2 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Eunotia m… +#> 3 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Psammothi… +#> 4 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Achnanthi… +#> 5 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Gomphonem… +#> 6 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Planothid… +#> 7 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Stauronei… +#> 8 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Staurosir… +#> 9 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Achnanthi… +#> 10 HOPB.AOS.rea… HOPB HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Nitzschia… +#> # … with 114,330 more rows, and 19 more variables: taxon_rank , +#> # variable_name , value , unit , sampleCondition , #> # perBottleSampleVolume , release , habitatType , #> # algalSampleType , benthicArea , samplingProtocolVersion , #> # substratumSizeClass , samplerType , phytoDepth1 , #> # phytoDepth2 , phytoDepth3 , latitude , longitude , #> # elevation neonDivData::data_beetle -#> # A tibble: 65,605 x 20 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 ABBY_002.b… ABBY ABBY_… 2016-09-13 PTELAM Pterostic… species -#> 2 ABBY_002.b… ABBY ABBY_… 2016-09-13 SYNAME Syntomus … species -#> 3 ABBY_002.b… ABBY ABBY_… 2016-09-27 AMAFAR Amara far… species -#> 4 ABBY_002.b… ABBY ABBY_… 2017-05-17 PTELAM Pterostic… species -#> 5 ABBY_002.b… ABBY ABBY_… 2017-05-31 OMUDEJ Omus deje… species -#> 6 ABBY_002.b… ABBY ABBY_… 2017-05-31 PTELAM Pterostic… species -#> 7 ABBY_002.b… ABBY ABBY_… 2017-06-14 SYNAME Syntomus … species -#> 8 ABBY_002.b… ABBY ABBY_… 2017-06-14 OMUDEJ Omus deje… species -#> 9 ABBY_002.b… ABBY ABBY_… 2017-06-28 HARINN Harpalus … species -#> 10 ABBY_002.b… ABBY ABBY_… 2018-05-01 NOTSYL Notiophil… species -#> # … with 65,595 more rows, and 13 more variables: variable_name , -#> # value , unit , boutID , trapID , trappingDays , -#> # release , samplingProtocolVersion , nativeStatusCode , -#> # remarks , latitude , longitude , elevation +#> # A tibble: 71,660 × 22 +#> location_id siteID plotID unique_sample_id trapID observation_dateti… +#> +#> 1 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-13 00:00:00 +#> 2 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-13 00:00:00 +#> 3 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2016… E 2016-09-27 00:00:00 +#> 4 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-17 00:00:00 +#> 5 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-31 00:00:00 +#> 6 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-05-31 00:00:00 +#> 7 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-14 00:00:00 +#> 8 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-14 00:00:00 +#> 9 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2017… E 2017-06-28 00:00:00 +#> 10 ABBY_002.basePlot.… ABBY ABBY_… ABBY_002.E.2018… E 2018-05-01 00:00:00 +#> # … with 71,650 more rows, and 16 more variables: taxon_id , +#> # taxon_name , taxon_rank , variable_name , value , +#> # unit , boutID , nativeStatusCode , release , +#> # remarks , samplingProtocolVersion , trappingDays , +#> # latitude , longitude , elevation , nlcdClass neonDivData::data_bird -#> # A tibble: 186,431 x 28 -#> location_id siteID plotID pointID observation_dat… taxon_id taxon_name -#> -#> 1 BART_025.b… BART BART_… C1 2015-06-14 09:2… BAWW Mniotilta… -#> 2 BART_025.b… BART BART_… C1 2015-06-14 09:2… REVI Vireo oli… -#> 3 BART_025.b… BART BART_… C1 2015-06-14 09:2… BCCH Poecile a… -#> 4 BART_025.b… BART BART_… C1 2015-06-14 09:2… BTNW Setophaga… -#> 5 BART_025.b… BART BART_… C1 2015-06-14 09:2… BTNW Setophaga… -#> 6 BART_025.b… BART BART_… B1 2015-06-14 09:4… WIWR Troglodyt… -#> 7 BART_025.b… BART BART_… B1 2015-06-14 09:4… WIWR Troglodyt… -#> 8 BART_025.b… BART BART_… B1 2015-06-14 09:4… BAWW Mniotilta… -#> 9 BART_025.b… BART BART_… B1 2015-06-14 09:4… BTNW Setophaga… -#> 10 BART_025.b… BART BART_… A1 2015-06-14 10:3… WIWR Troglodyt… -#> # … with 186,421 more rows, and 21 more variables: taxon_rank , -#> # variable_name , value , unit , pointCountMinute , -#> # targetTaxaPresent , nativeStatusCode , observerDistance , -#> # detectionMethod , visualConfirmation , sexOrAge , -#> # release , observedHabitat , observedAirTemp , -#> # kmPerHourObservedWindSpeed , samplingProtocolVersion , -#> # remarks , clusterCode , latitude , longitude , -#> # elevation +#> # A tibble: 226,804 × 35 +#> location_id siteID plotID pointID unique_sample_id observation_dateti… +#> +#> 1 BART_025.birdGrid… BART BART_… BART_025.C1.201… 2015-06-14 09:23:00 +#> 2 BART_025.birdGrid… BART BART_… BART_025.C1.201… 2015-06-14 09:23:00 +#> 3 BART_025.birdGrid… BART BART_… BART_025.C1.201… 2015-06-14 09:23:00 +#> 4 BART_025.birdGrid… BART BART_… BART_025.C1.201… 2015-06-14 09:23:00 +#> 5 BART_025.birdGrid… BART BART_… BART_025.C1.201… 2015-06-14 09:23:00 +#> 6 BART_025.birdGrid… BART BART_… BART_025.B1.201… 2015-06-14 09:43:00 +#> 7 BART_025.birdGrid… BART BART_… BART_025.B1.201… 2015-06-14 09:43:00 +#> 8 BART_025.birdGrid… BART BART_… BART_025.B1.201… 2015-06-14 09:43:00 +#> 9 BART_025.birdGrid… BART BART_… BART_025.B1.201… 2015-06-14 09:43:00 +#> 10 BART_025.birdGrid… BART BART_… BART_025.A1.201… 2015-06-14 10:31:00 +#> # … with 226,794 more rows, and 29 more variables: taxon_id , +#> # taxon_name , taxon_rank , variable_name , value , +#> # unit , pointCountMinute , targetTaxaPresent , +#> # nativeStatusCode , observerDistance , detectionMethod , +#> # visualConfirmation , sexOrAge , release , +#> # startCloudCoverPercentage , endCloudCoverPercentage , +#> # startRH , endRH , observedHabitat , … neonDivData::data_fish -#> # A tibble: 5,341 x 26 -#> location_id siteID pointID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 HOPB.AOS.f… HOPB point.… 2017-05-01 RHIATR Rhinichth… species -#> 2 HOPB.AOS.f… HOPB point.… 2017-05-01 SALTRU Salmo tru… species -#> 3 HOPB.AOS.f… HOPB point.… 2017-05-01 SALFON Salvelinu… species -#> 4 HOPB.AOS.f… HOPB point.… 2017-10-23 RHIATR Rhinichth… species -#> 5 HOPB.AOS.f… HOPB point.… 2017-10-23 SALTRU Salmo tru… species -#> 6 HOPB.AOS.f… HOPB point.… 2017-10-23 SALFON Salvelinu… species -#> 7 HOPB.AOS.f… HOPB point.… 2017-10-23 SEMATR Semotilus… species -#> 8 HOPB.AOS.f… HOPB point.… 2019-05-06 RHIATR Rhinichth… species -#> 9 HOPB.AOS.f… HOPB point.… 2019-05-06 SALFON Salvelinu… species -#> 10 HOPB.AOS.f… HOPB point.… 2019-05-06 SEMATR Semotilus… species -#> # … with 5,331 more rows, and 19 more variables: variable_name , -#> # value , unit , samplerType , fixedRandomReach , +#> # A tibble: 6,639 × 29 +#> location_id siteID pointID unique_sample_id observation_dateti… taxon_id +#> +#> 1 HOPB.AOS.fish.p… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 RHIATR +#> 2 HOPB.AOS.fish.p… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALTRU +#> 3 HOPB.AOS.fish.p… HOPB point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALFON +#> 4 HOPB.AOS.fish.p… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 RHIATR +#> 5 HOPB.AOS.fish.p… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALTRU +#> 6 HOPB.AOS.fish.p… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALFON +#> 7 HOPB.AOS.fish.p… HOPB point.… HOPB.20171023.0… 2017-10-23 00:00:00 SEMATR +#> 8 HOPB.AOS.fish.p… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 RHIATR +#> 9 HOPB.AOS.fish.p… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 SALFON +#> 10 HOPB.AOS.fish.p… HOPB point.… HOPB.20190506.0… 2019-05-06 00:00:00 SEMATR +#> # … with 6,629 more rows, and 23 more variables: taxon_name , +#> # taxon_rank , variable_name , value , unit , +#> # reachID , samplerType , fixedRandomReach , #> # measuredReachLength , efTime , passStartTime , -#> # passEndTime , mean_efishtime , netSetTime , +#> # passEndTime , mean_efishtime , release , netSetTime , #> # netEndTime , netDeploymentTime , netLength , netDepth , #> # efTime2 , latitude , longitude , elevation neonDivData::data_herp_bycatch -#> # A tibble: 2,385 x 20 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 BART_028.b… BART BART_… 2014-06-12 PLECIN Plethodon… species -#> 2 BART_002.b… BART BART_… 2014-06-12 PLECIN Plethodon… species -#> 3 BART_066.b… BART BART_… 2014-06-12 PLECIN Plethodon… species -#> 4 BART_031.b… BART BART_… 2014-06-26 PLECIN Plethodon… species -#> 5 BART_066.b… BART BART_… 2014-06-26 PLECIN Plethodon… species -#> 6 BART_068.b… BART BART_… 2014-06-26 PLECIN Plethodon… species -#> 7 BART_031.b… BART BART_… 2014-07-10 PLECIN Plethodon… species -#> 8 BART_002.b… BART BART_… 2014-07-10 PLECIN Plethodon… species -#> 9 BART_028.b… BART BART_… 2014-07-10 PLECIN Plethodon… species -#> 10 BART_028.b… BART BART_… 2014-07-24 PLECIN Plethodon… species -#> # … with 2,375 more rows, and 13 more variables: variable_name , -#> # value , unit , neon_event_id , trappingDays , -#> # release , nativeStatusCode , neon_trap_id , +#> # A tibble: 2,732 × 22 +#> location_id siteID plotID unique_sample_id trapID observation_dateti… +#> +#> 1 BART_066.basePlot.… BART BART_… BART_066.E.2014… E 2014-06-12 00:00:00 +#> 2 BART_002.basePlot.… BART BART_… BART_002.W.2014… W 2014-06-12 00:00:00 +#> 3 BART_028.basePlot.… BART BART_… BART_028.W.2014… W 2014-06-12 00:00:00 +#> 4 BART_066.basePlot.… BART BART_… BART_066.N.2014… N 2014-06-26 00:00:00 +#> 5 BART_031.basePlot.… BART BART_… BART_031.E.2014… E 2014-06-26 00:00:00 +#> 6 BART_068.basePlot.… BART BART_… BART_068.W.2014… W 2014-06-26 00:00:00 +#> 7 BART_028.basePlot.… BART BART_… BART_028.N.2014… N 2014-07-10 00:00:00 +#> 8 BART_002.basePlot.… BART BART_… BART_002.N.2014… N 2014-07-10 00:00:00 +#> 9 BART_031.basePlot.… BART BART_… BART_031.S.2014… S 2014-07-10 00:00:00 +#> 10 BART_068.basePlot.… BART BART_… BART_068.E.2014… E 2014-07-24 00:00:00 +#> # … with 2,722 more rows, and 16 more variables: taxon_id , +#> # taxon_name , taxon_rank , variable_name , value , +#> # unit , trappingDays , release , nativeStatusCode , #> # remarksSorting , remarksFielddata , latitude , -#> # longitude , elevation +#> # longitude , elevation , plotType , nlcdClass neonDivData::data_macroinvertebrate -#> # A tibble: 134,728 x 23 -#> location_id siteID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 HOPB.AOS.r… HOPB 2016-10-11 14:3… STISP4 Stilobezz… genus -#> 2 HOPB.AOS.r… HOPB 2016-10-11 14:3… EMPSP Empididae… family -#> 3 HOPB.AOS.r… HOPB 2016-10-11 14:3… PSEHER Psephenus… species -#> 4 HOPB.AOS.r… HOPB 2016-10-11 14:3… LEPSP4 Leptophle… family -#> 5 HOPB.AOS.r… HOPB 2016-10-11 14:3… CAPSP2 Capniidae… family -#> 6 HOPB.AOS.r… HOPB 2016-10-11 14:3… THIGRO Thieneman… speciesGr… -#> 7 HOPB.AOS.r… HOPB 2016-10-11 14:3… NAISP1 Nais sp. genus -#> 8 HOPB.AOS.r… HOPB 2016-10-11 14:3… ACESP1 Acerpenna… genus -#> 9 HOPB.AOS.r… HOPB 2016-10-11 14:3… LEUSP8 Leuctra s… genus -#> 10 HOPB.AOS.r… HOPB 2016-10-11 14:3… HEPSP Heptageni… family -#> # … with 134,718 more rows, and 17 more variables: variable_name , -#> # value , unit , subsamplePercent , release , +#> # A tibble: 106,641 × 25 +#> location_id siteID unique_sample_id observation_dateti… taxon_id taxon_name +#> +#> 1 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 ABLSP Ablabesmy… +#> 2 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 BAESP Baetidae … +#> 3 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CAESP5 Caenis sp. +#> 4 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CALFLU Callibaet… +#> 5 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CERSP18 Ceratopog… +#> 6 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CHISP2 Chironomi… +#> 7 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CHISP8 Chironomu… +#> 8 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CLISP3 Clinotany… +#> 9 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 COESP Coenagrio… +#> 10 ARIK.AOS.rea… ARIK ARIK.20140714.C… 2014-07-14 17:51:00 CORSP4 Corixidae… +#> # … with 106,631 more rows, and 19 more variables: taxon_rank , +#> # variable_name , value , unit , estimatedTotalCount , +#> # individualCount , subsamplePercent , release , #> # benthicArea , habitatType , samplerType , -#> # substratumSizeClass , neon_sample_id , remarks , -#> # ponarDepth , snagLength , snagDiameter , latitude , -#> # longitude , elevation +#> # substratumSizeClass , remarks , ponarDepth , +#> # snagLength , snagDiameter , latitude , longitude , +#> # elevation neonDivData::data_mosquito -#> # A tibble: 96,843 x 23 -#> location_id siteID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 BART_059.m… BART 2014-06-03 10:1… AEDABS Aedes abs… species -#> 2 BART_059.m… BART 2014-06-03 10:1… AEDCOM Aedes com… species -#> 3 BART_059.m… BART 2014-06-03 10:1… AEDINT Aedes int… species -#> 4 BART_058.m… BART 2014-06-03 11:1… AEDINT Aedes int… species -#> 5 BART_058.m… BART 2014-06-03 11:1… AEDCOM Aedes com… species -#> 6 BART_060.m… BART 2014-06-03 11:0… AEDINT Aedes int… species -#> 7 BART_060.m… BART 2014-06-03 11:0… AEDABS Aedes abs… species -#> 8 BART_060.m… BART 2014-06-03 11:0… AEDCOM Aedes com… species -#> 9 BART_054.m… BART 2014-06-03 10:5… AEDCAN2 Aedes can… species -#> 10 BART_054.m… BART 2014-06-03 10:5… AEDABS Aedes abs… species -#> # … with 96,833 more rows, and 17 more variables: variable_name , -#> # value , unit , sortDate , sampleID , subsampleID , -#> # totalWeight , subsampleWeight , release , trapHours , -#> # samplingProtocolVersion , nativeStatusCode , sex , +#> # A tibble: 109,212 × 26 +#> location_id siteID unique_sample_id subsampleID observation_dat… taxon_id +#> +#> 1 BART_059.mosqu… BART BART_059.201406… BART_059.2… 2014-06-03 AEDCOM +#> 2 BART_059.mosqu… BART BART_059.201406… BART_059.2… 2014-06-03 AEDABS +#> 3 BART_059.mosqu… BART BART_059.201406… BART_059.2… 2014-06-03 AEDINT +#> 4 BART_058.mosqu… BART BART_058.201406… BART_058.2… 2014-06-03 AEDINT +#> 5 BART_058.mosqu… BART BART_058.201406… BART_058.2… 2014-06-03 AEDCOM +#> 6 BART_060.mosqu… BART BART_060.201406… BART_060.2… 2014-06-03 AEDCOM +#> 7 BART_060.mosqu… BART BART_060.201406… BART_060.2… 2014-06-03 AEDABS +#> 8 BART_060.mosqu… BART BART_060.201406… BART_060.2… 2014-06-03 AEDINT +#> 9 BART_054.mosqu… BART BART_054.201406… BART_054.2… 2014-06-03 AEDCOM +#> 10 BART_054.mosqu… BART BART_054.201406… BART_054.2… 2014-06-03 AEDINT +#> # … with 109,202 more rows, and 20 more variables: taxon_name , +#> # taxon_rank , variable_name , value , unit , +#> # nativeStatusCode , release , remarks_sorting , +#> # samplingProtocolVersion , sex , sortDate , +#> # subsampleWeight , totalWeight , trapHours , #> # weightBelowDetection , latitude , longitude , -#> # elevation +#> # elevation , nlcdClass , plotType neonDivData::data_plant -#> # A tibble: 915,205 x 23 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 BART_006.b… BART BART_… 2014-06-10 VILA11 Viburnum … species -#> 2 BART_006.b… BART BART_… 2014-06-10 ACSA3 Acer sacc… species -#> 3 BART_006.b… BART BART_… 2014-06-10 FAGR Fagus gra… species -#> 4 BART_006.b… BART BART_… 2014-06-10 FAGR Fagus gra… species -#> 5 BART_006.b… BART BART_… 2014-06-10 FAGR Fagus gra… species -#> 6 BART_006.b… BART BART_… 2014-06-10 FAGR Fagus gra… species -#> 7 BART_006.b… BART BART_… 2014-06-10 ACSA3 Acer sacc… species -#> 8 BART_006.b… BART BART_… 2014-06-10 FAGR Fagus gra… species -#> 9 BART_006.b… BART BART_… 2014-06-10 ACPE Acer pens… species -#> 10 BART_006.b… BART BART_… 2014-06-10 ACSA3 Acer sacc… species -#> # … with 915,195 more rows, and 16 more variables: variable_name , -#> # value , unit , presence_absence , subplotID , -#> # subplot_id , subsubplot_id , boutNumber , -#> # nativeStatusCode , heightPlantOver300cm , -#> # heightPlantSpecies , release , sample_area_m2 , -#> # latitude , longitude , elevation +#> # A tibble: 1,034,093 × 26 +#> location_id siteID plotID unique_sample_id subplotID subplot_id subsubplot_id +#> +#> 1 BART_006.b… BART BART_… BART_006.basePl… 31.4.1 31 4 +#> 2 BART_006.b… BART BART_… BART_006.basePl… 31.4.1 31 4 +#> 3 BART_006.b… BART BART_… BART_006.basePl… 41.1.1 41 1 +#> 4 BART_006.b… BART BART_… BART_006.basePl… 41.4.1 41 4 +#> 5 BART_006.b… BART BART_… BART_006.basePl… 41.4.1 41 4 +#> 6 BART_006.b… BART BART_… BART_006.basePl… 41.4.1 41 4 +#> 7 BART_006.b… BART BART_… BART_006.basePl… 32.2.1 32 2 +#> 8 BART_006.b… BART BART_… BART_006.basePl… 41.1.1 41 1 +#> 9 BART_006.b… BART BART_… BART_006.basePl… 32.4.1 32 4 +#> 10 BART_006.b… BART BART_… BART_006.basePl… 32.4.1 32 4 +#> # … with 1,034,083 more rows, and 19 more variables: +#> # observation_datetime , taxon_id , taxon_name , +#> # taxon_rank , variable_name , value , unit , +#> # presence_absence , boutNumber , nativeStatusCode , +#> # heightPlantOver300cm , heightPlantSpecies , release , +#> # sample_area_m2 , latitude , longitude , elevation , +#> # plotType , nlcdClass neonDivData::data_small_mammal -#> # A tibble: 15,275 x 19 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 HARV_001.m… HARV HARV_… 2013-10-03 BLBR Blarina b… species -#> 2 HARV_001.m… HARV HARV_… 2013-10-03 NAIN Napaeozap… species -#> 3 HARV_001.m… HARV HARV_… 2013-10-03 PELE Peromyscu… species -#> 4 HARV_001.m… HARV HARV_… 2013-10-03 PEMA Peromyscu… species -#> 5 HARV_001.m… HARV HARV_… 2013-10-03 SOCI Sorex cin… species -#> 6 HARV_001.m… HARV HARV_… 2013-10-03 TAST Tamias st… species -#> 7 HARV_006.m… HARV HARV_… 2013-10-03 PELE Peromyscu… species -#> 8 HARV_006.m… HARV HARV_… 2013-10-03 PEMA Peromyscu… species -#> 9 HARV_006.m… HARV HARV_… 2013-10-03 PESP Peromyscu… genus -#> 10 HARV_006.m… HARV HARV_… 2013-10-03 TAST Tamias st… species -#> # … with 15,265 more rows, and 12 more variables: variable_name , -#> # value , unit , year , month , -#> # n_trap_nights_per_bout_per_plot , n_nights_per_bout , -#> # nativeStatusCode , release , latitude , longitude , -#> # elevation +#> # A tibble: 17,279 × 22 +#> location_id siteID plotID unique_sample_id observation_dat… taxon_id +#> +#> 1 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 MIOR +#> 2 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 PEKE +#> 3 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 PEMA +#> 4 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2016-08-27 SOMO +#> 5 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 MIOR +#> 6 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 PEMA +#> 7 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOMO +#> 8 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOSP +#> 9 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOTR +#> 10 ABBY_002.mammalGrid… ABBY ABBY_… ABBY_002.mammal… 2017-04-23 SOVA +#> # … with 17,269 more rows, and 16 more variables: taxon_name , +#> # taxon_rank , variable_name , value , unit , year , +#> # month , n_trap_nights_per_bout_per_plot , +#> # n_nights_per_bout , nativeStatusCode , release , +#> # latitude , longitude , elevation , plotType , +#> # nlcdClass neonDivData::data_tick -#> # A tibble: 123,060 x 20 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 BART_011.t… BART BART_… 2014-06-02 18:3… IXOSP2 Ixodida s… order -#> 2 BART_011.t… BART BART_… 2014-06-02 18:3… IXOSPP Ixodidae … family -#> 3 BART_011.t… BART BART_… 2014-06-02 18:3… IXOSP Ixodidae … family -#> 4 BART_011.t… BART BART_… 2014-06-02 18:3… IXOSCA Ixodes sc… species -#> 5 BART_011.t… BART BART_… 2014-06-02 18:3… AMBAME Amblyomma… species -#> 6 BART_011.t… BART BART_… 2014-06-02 18:3… IXOANG Ixodes an… species -#> 7 BART_011.t… BART BART_… 2014-06-02 18:3… IXOPAC Ixodes pa… species -#> 8 BART_011.t… BART BART_… 2014-06-02 18:3… DERVAR Dermacent… species -#> 9 BART_011.t… BART BART_… 2014-06-02 18:3… AMBAME Amblyomma… species -#> 10 BART_011.t… BART BART_… 2014-06-02 18:3… HAELON Haemaphys… species -#> # … with 123,050 more rows, and 13 more variables: variable_name , -#> # value , unit , neon_event_id , samplingMethod , -#> # totalSampledArea , targetTaxaPresent , release , -#> # LifeStage , remarks_field , latitude , longitude , -#> # elevation +#> # A tibble: 357,235 × 22 +#> location_id siteID plotID unique_sample_id observation_dateti… taxon_id +#> +#> 1 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP +#> 2 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA +#> 3 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBAME +#> 4 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBSPP +#> 5 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP2 +#> 6 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOANG +#> 7 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOPAC +#> 8 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 DERVAR +#> 9 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA +#> 10 ABBY_001.tickPlo… ABBY ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBAME +#> # … with 357,225 more rows, and 16 more variables: taxon_name , +#> # taxon_rank , variable_name , value , unit , +#> # LifeStage , release , remarks_field , samplingMethod , +#> # targetTaxaPresent , totalSampledArea , latitude , +#> # longitude , elevation , nlcdClass , plotType neonDivData::data_tick_pathogen -#> # A tibble: 6,498 x 17 -#> location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank -#> -#> 1 HARV_001.t… HARV HARV_… 2014-06-02 16:1… Borreli… Borrelia … species -#> 2 HARV_001.t… HARV HARV_… 2014-06-24 13:5… Borreli… Borrelia … species -#> 3 HARV_001.t… HARV HARV_… 2014-07-14 17:5… Borreli… Borrelia … species -#> 4 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Anaplas… Anaplasma… species -#> 5 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Babesia… Babesia m… species -#> 6 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Borreli… Borrelia … species -#> 7 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Borreli… Borrelia … species -#> 8 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Borreli… Borrelia … species -#> 9 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Borreli… Borrelia … species -#> 10 HARV_022.t… HARV HARV_… 2015-06-03 13:3… Borreli… Borrelia … genus -#> # … with 6,488 more rows, and 10 more variables: variable_name , -#> # value , unit , lifeStage , batchID , -#> # testProtocolVersion , release , latitude , longitude , -#> # elevation +#> # A tibble: 8,490 × 21 +#> location_id siteID plotID unique_sample_id observation_dateti… taxon_id +#> +#> 1 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-06-02 16:10:00 Borreli… +#> 2 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-06-24 13:50:00 Borreli… +#> 3 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-07-14 17:53:00 Borreli… +#> 4 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Anaplas… +#> 5 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Babesia… +#> 6 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 7 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 8 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 9 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 10 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Ehrlich… +#> # … with 8,480 more rows, and 15 more variables: taxon_name , +#> # taxon_rank , variable_name , value , unit , +#> # lifeStage , testProtocolVersion , release , n_tests , +#> # n_positive_tests , latitude , longitude , elevation , +#> # nlcdClass , plotType ``` # Contributing diff --git a/docs/authors.html b/docs/authors.html index 82c002d..0ba7867 100644 --- a/docs/authors.html +++ b/docs/authors.html @@ -140,7 +140,7 @@

Citation

-

Daijiang Li, Sydne Record, Eric Sokol, Matthew E. Bitters, Melissa Y. Chen, Anny Y. Chung, Matthew R. Helmus, Ruvi Jaimes, Lara Jansen, Marta A. Jarzyna, Michael G. Just, Jalene M. LaMontagne, Brett Melbourne, Wynne Moss, Kari Norman, Stephanie Parker, Natalie Robinson, Bijan Seyednasrollah, Colin Smith, Sarah Spaulding, Thilina Surasinghe, Sarah Thomsen, Phoebe Zarnetske. Standardized NEON organismal data for biodiversity research. Ecosphere, ...

+

Daijiang Li, Sydne Record, Eric Sokol, Matthew E. Bitters, Melissa Y. Chen, Anny Y. Chung, Matthew R. Helmus, Ruvi Jaimes, Lara Jansen, Marta A. Jarzyna, Michael G. Just, Jalene M. LaMontagne, Brett Melbourne, Wynne Moss, Kari Norman, Stephanie Parker, Natalie Robinson, Bijan Seyednasrollah, Colin Smith, Sarah Spaulding, Thilina Surasinghe, Sarah Thomsen, Phoebe Zarnetske. Standardized NEON organismal data for biodiversity research. Ecosphere, 2022

@Article{,
   title = {Standardized NEON organismal data for biodiversity research},
   author = {Daijiang Li and Sydne Record and Eric Sokol and Matthew E. Bitters and Melissa Y. Chen and Anny Y. Chung and Matthew R. Helmus and Ruvi Jaimes and Lara Jansen and Marta A. Jarzyna and Michael G. Just and Jalene M. LaMontagne and Brett Melbourne and Wynne Moss and Kari Norman and Stephanie Parker and Natalie Robinson and Bijan Seyednasrollah and Colin Smith and Sarah Spaulding and Thilina Surasinghe and Sarah Thomsen and Phoebe Zarnetske},
diff --git a/docs/index.html b/docs/index.html
index fdb2b1d..3ef0aec 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -67,7 +67,7 @@
 
 
The goal of neonDivData is to provide cleaned NEON organismal data to
 facilitate biodiversity research. The authors of this R data package
-have all spent lots of effort to clean NEON data for our own research;
+have all spend lots of effort to clean NEON data for our own research;
 it makes the most sense to document such processes and provide the clean
 data product so that the large community can use them readily. This will
 save us time to dig into the extensive documenations of NEON data and to
@@ -90,18 +90,19 @@
 knitr::kable(neonDivData::data_summary[, !names(neonDivData::data_summary) %in% c("sites", "data_package_id")])
-+++---------++++++++ @@ -113,6 +114,7 @@ + @@ -120,30 +122,32 @@ - - + + - + - + + - + - + - + - + + - + - + - + + - - + + + + + + + + + + + + + + + + + - + - + - - - - - - - - - - - - - - - + + - + - + - + + - + - + - + + - + - - + + - + + - - - - + + + + - + + - + - + - + + @@ -272,32 +284,34 @@ - + - + - + + - - - - - - - - - - + + + + + + + + + + + - +
taxon_groupneon_ecocomdp_mapping_method original_neon_data_product_id original_neon_data_versionoriginal_neon_data_doi r_object variable_names units
ALGAE194633227934 2014-07-022019-07-152020-07-28 ALGAE from the NEON data product: Periphyton, seston, and phytoplankton collection neon.ecocomdp.20166.001.001 DP1.20166.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/3cvp-hw55|https://doi.org/10.48443/g2k4-d258 data_algaecell density OR cells OR valvescell density cells/cm2 OR cells/mL
SMALL_MAMMALS145149 46 2013-06-192020-11-202021-11-18 SMALL_MAMMALS from the NEON data product: Small mammal box trapping neon.ecocomdp.10072.001.001 DP1.10072.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/j1g9-2j27|https://doi.org/10.48443/h3dk-3a71 data_small_mammal count unique individuals per 100 trap nights per plot per @@ -151,120 +155,128 @@
PLANTS61976544 47 2013-06-242020-10-072021-10-13 PLANTS from the NEON data product: Plant presence and percent cover neon.ecocomdp.10058.001.001 DP1.10058.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/abge-r811|https://doi.org/10.48443/pr5e-1q60 data_plantpercent cover OR presence absencepercent of plot area covered by taxon OR Unitlesspercent coverpercent of plot area covered by taxon
FISH158282016-03-292021-12-14FISH from the NEON data product: Fish electrofishing, +gill netting, and fyke netting countsneon.ecocomdp.20107.001.001DP1.20107.001RELEASE-2022|PROVISIONAL|NAhttps://doi.org/10.48443/17cz-g567|https://doi.org/10.48443/7p84-6j62data_fishabundancecatch per unit effort
BEETLES758768 47 2013-07-032020-10-132021-10-05 BEETLES from the NEON data product: Ground beetles sampled from pitfall traps neon.ecocomdp.10022.001.001 DP1.10022.001RELEASE-2021|PROVISIONALdata_herp_bycatchabundancecount per trap day
HERPTILES128412014-04-022020-09-29HERPTILES (bycatch) from the NEON data product: Ground -beetles sampled from pitfall trapsneon.ecocomdp.10022.001.002DP1.10022.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/tx5f-dy17|https://doi.org/10.48443/xgea-hw23 data_herp_bycatch abundance count per trap day
MACROINVERTEBRATES13301373 34 2014-07-012020-07-292021-07-28 MACROINVERTEBRATES from the NEON data product: Macroinvertebrate collection neon.ecocomdp.20120.001.001 DP1.20120.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/855x-0n27|https://doi.org/10.48443/gn8x-k322 data_macroinvertebrate density count per square meter
MOSQUITOES128131 47 2014-04-092020-06-162021-06-11 MOSQUITOES from the NEON data product: Mosquitoes sampled from CO2 traps neon.ecocomdp.10043.001.001 DP1.10043.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/9smm-v091|https://doi.org/10.48443/c7h7-q918 data_mosquito abundance count per trap hour
BIRDS541577 472015-05-132020-07-202013-06-052021-07-16 BIRDS from the NEON data product: Breeding landbird point counts neon.ecocomdp.10003.001.001 DP1.10003.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/s730-dy13|https://doi.org/10.48443/88sy-ah40 data_bird cluster size count of individuals
TICKS18412014-04-172019-03-1819462014-04-022021-11-18 TICKS from the NEON data product: Ticks sampled using drag cloths neon.ecocomdp.10093.001.001 DP1.10093.001RELEASE-2021RELEASE-2022|PROVISIONALhttps://doi.org/10.48443/dx40-wr20|https://doi.org/10.48443/7jh5-8s51 data_tick abundance count per square meter
ZOOPLANKTON157166 7 2014-07-022020-07-222021-07-21 ZOOPLANKTON from the NEON data product: Zooplankton collection neon.ecocomdp.20219.001.001 DP1.20219.001RELEASE-2021|PROVISIONALRELEASE-2022|PROVISIONALhttps://doi.org/10.48443/qzr1-jr79|https://doi.org/10.48443/150d-yf27 data_zooplankton density count per liter
TICK_PATHOGENS 121516 2014-04-172018-10-032020-10-01 TICK_PATHOGENS from the NEON data product: Tick-borne pathogen status neon.ecocomdp.10092.001.001 DP1.10092.001RELEASE-2021RELEASE-2022https://doi.org/10.48443/5fab-xv19|https://doi.org/10.48443/nygx-dm71 data_tick_pathogen positivity rate positive tests per pathogen per sampling event
FISH147282016-03-292020-12-03FISH from the NEON data product: Fish electrofishing, -gill netting, and fyke netting countsneon.ecocomdp.20107.001.001DP1.20107.001NAdata_fishHERPTILES136412014-04-022021-10-06HERPTILES (bycatch) from the NEON data product: Ground +beetles sampled from pitfall trapsneon.ecocomdp.10022.001.002DP1.10022.001RELEASE-2022|PROVISIONALhttps://doi.org/10.48443/tx5f-dy17|https://doi.org/10.48443/xgea-hw23data_herp_bycatch abundancecatch per unit effortcount per trap day
@@ -314,267 +328,273 @@

Available data products 
 neonDivData::neon_sites
-#> # A tibble: 81 x 10
-#>    `Site Name` siteID `Domain Name` domainID State Latitude Longitude
-#>    <chr>       <chr>  <chr>         <chr>    <chr>    <dbl>     <dbl>
-#>  1 Little Roc… LIRO   Great Lakes   D05      WI        46.0     -89.7
-#>  2 West St Lo… WLOU   Southern Roc… D13      CO        39.9    -106. 
-#>  3 Pu'u Maka'… PUUM   Pacific Trop… D20      HI        19.6    -155. 
-#>  4 Flint River FLNT   Southeast     D03      GA        31.2     -84.4
-#>  5 McDiffett … MCDI   Prairie Peni… D06      KS        38.9     -96.4
-#>  6 Lewis Run   LEWI   Mid-Atlantic  D02      VA        39.1     -78.0
-#>  7 Blue River  BLUE   Southern Pla… D11      OK        34.4     -96.6
-#>  8 Teakettle … TECR   Pacific Sout… D17      CA        37.0    -119. 
-#>  9 Lower Hop … HOPB   Northeast     D01      MA        42.5     -72.3
-#> 10 Martha Cre… MART   Pacific Nort… D16      WA        45.8    -122. 
-#> # … with 71 more rows, and 3 more variables: `Site Type` <chr>, `Site
-#> #   Subtype` <chr>, `Site Host` <chr>
+#> # A tibble: 81 × 10
+#>    `Site Name`            siteID `Domain Name` domainID State Latitude Longitude
+#>    <chr>                  <chr>  <chr>         <chr>    <chr>    <dbl>     <dbl>
+#>  1 Little Rock Lake       LIRO   Great Lakes   D05      WI        46.0     -89.7
+#>  2 West St Louis Creek    WLOU   Southern Roc… D13      CO        39.9    -106. 
+#>  3 Pu'u Maka'ala Natural… PUUM   Pacific Trop… D20      HI        19.6    -155. 
+#>  4 Flint River            FLNT   Southeast     D03      GA        31.2     -84.4
+#>  5 McDiffett Creek        MCDI   Prairie Peni… D06      KS        38.9     -96.4
+#>  6 Lewis Run              LEWI   Mid-Atlantic  D02      VA        39.1     -78.0
+#>  7 Blue River             BLUE   Southern Pla… D11      OK        34.4     -96.6
+#>  8 Teakettle 2 Creek      TECR   Pacific Sout… D17      CA        37.0    -119. 
+#>  9 Lower Hop Brook        HOPB   Northeast     D01      MA        42.5     -72.3
+#> 10 Martha Creek           MART   Pacific Nort… D16      WA        45.8    -122. 
+#> # … with 71 more rows, and 3 more variables: `Site Type` <chr>,
+#> #   `Site Subtype` <chr>, `Site Host` <chr>
 neonDivData::neon_taxa
-#> # A tibble: 11,507 x 4
-#>    taxon_id     taxon_name                                taxon_rank taxon_group
-#>    <chr>        <chr>                                     <chr>      <chr>      
-#>  1 NEONDREX850… Heteroleibleinia sp.                      genus      ALGAE      
-#>  2 BATRACHOSPF… Batrachospermaceae sp.                    family     ALGAE      
-#>  3 NEONDREX550… Reimeria sinuata (Gregory) Kociolek et S… species    ALGAE      
-#>  4 NEONDREX330… Eunotia rhomboidea Hustedt                species    ALGAE      
-#>  5 NEONDREX1038 Achnanthidium deflexum (Reimer) Kingston  species    ALGAE      
-#>  6 NEONDREX1036 Achnanthidium rivulare Potapova et Ponad… species    ALGAE      
-#>  7 NEONDREX331… Eunotia muscicola var. tridentula Nörpel… variety    ALGAE      
-#>  8 NEONDREX465… Navicula veneta Kützing                   species    ALGAE      
-#>  9 NEONDREX483… Nitzschia acidoclinata Lange-Bertalot     species    ALGAE      
-#> 10 NEONDREX110… Encyonema ventricosum (C. A. Agardh) Gru… species    ALGAE      
-#> # … with 11,497 more rows
+#> # A tibble: 12,312 × 4
+#>    taxon_id       taxon_name                              taxon_rank taxon_group
+#>    <chr>          <chr>                                   <chr>      <chr>      
+#>  1 NEONDREX48008  Nitzschia dissipata (Kützing) Grunow    species    ALGAE      
+#>  2 NEONDREX33183  Eunotia minor (Kützing) Grunow          species    ALGAE      
+#>  3 NEONDREX186008 Psammothidium subatomoides (Hustedt) B… species    ALGAE      
+#>  4 NEONDREX1032   Achnanthidium latecephalum Kobayashi    species    ALGAE      
+#>  5 NEONDREX37311  Gomphonema parvulius (Lange-Bertalot e… species    ALGAE      
+#>  6 NEONDREX155017 Planothidium frequentissimum (Lange-Be… species    ALGAE      
+#>  7 NEONDREX62008  Stauroneis kriegeri Patrick             species    ALGAE      
+#>  8 NEONDREX172006 Staurosira construens var. venter (Ehr… variety    ALGAE      
+#>  9 NEONDREX1036   Achnanthidium rivulare Potapova et Pon… species    ALGAE      
+#> 10 NEONDREX48025  Nitzschia palea (Kützing) Smith         species    ALGAE      
+#> # … with 12,302 more rows
 neonDivData::neon_location
-#> # A tibble: 4,162 x 8
-#>    location_id siteID plotID latitude longitude elevation nlcdClass
-#>    <chr>       <chr>  <chr>     <dbl>     <dbl>     <dbl> <chr>    
-#>  1 ABBY_001.b… ABBY   ABBY_…     45.8     -122.      303. evergree…
-#>  2 ABBY_001.b… ABBY   ABBY_…     45.8     -122.      303. evergree…
-#>  3 ABBY_001.t… ABBY   ABBY_…     45.8     -122.      298. evergree…
-#>  4 ABBY_002.b… ABBY   ABBY_…     45.7     -122.      638. grasslan…
-#>  5 ABBY_002.b… ABBY   ABBY_…     45.7     -122.      638. grasslan…
-#>  6 ABBY_002.b… ABBY   ABBY_…     45.7     -122.      638. grasslan…
-#>  7 ABBY_002.m… ABBY   ABBY_…     45.7     -122.      624. grasslan…
-#>  8 ABBY_002.t… ABBY   ABBY_…     45.7     -122.      651. grasslan…
-#>  9 ABBY_003.b… ABBY   ABBY_…     45.8     -122.      602. evergree…
-#> 10 ABBY_003.b… ABBY   ABBY_…     45.8     -122.      602. evergree…
-#> # … with 4,152 more rows, and 1 more variable: aquaticSiteType <chr>
+#> # A tibble: 4,259 × 8
+#>    location_id             siteID plotID  latitude longitude elevation nlcdClass
+#>    <chr>                   <chr>  <chr>      <dbl>     <dbl>     <dbl> <chr>    
+#>  1 ABBY_001.basePlot.brd   ABBY   ABBY_0…     45.8     -122.      303. evergree…
+#>  2 ABBY_001.basePlot.div   ABBY   ABBY_0…     45.8     -122.      303. evergree…
+#>  3 ABBY_001.tickPlot.tck   ABBY   ABBY_0…     45.8     -122.      298. evergree…
+#>  4 ABBY_002.basePlot.bet   ABBY   ABBY_0…     45.7     -122.      638. grasslan…
+#>  5 ABBY_002.basePlot.brd   ABBY   ABBY_0…     45.7     -122.      638. grasslan…
+#>  6 ABBY_002.basePlot.div   ABBY   ABBY_0…     45.7     -122.      638. grasslan…
+#>  7 ABBY_002.mammalGrid.mam ABBY   ABBY_0…     45.7     -122.      624. grasslan…
+#>  8 ABBY_002.tickPlot.tck   ABBY   ABBY_0…     45.7     -122.      651. grasslan…
+#>  9 ABBY_003.basePlot.bet   ABBY   ABBY_0…     45.8     -122.      602. evergree…
+#> 10 ABBY_003.basePlot.brd   ABBY   ABBY_0…     45.8     -122.      602. evergree…
+#> # … with 4,249 more rows, and 1 more variable: aquaticSiteType <chr>
 neonDivData::data_algae
-#> # A tibble: 90,224 x 24
-#>    location_id siteID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Heterolei… genus     
-#>  2 HOPB.AOS.r… HOPB   2016-10-05 10:4… BATRACH… Batrachos… family    
-#>  3 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Reimeria … species   
-#>  4 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Eunotia r… species   
-#>  5 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Achnanthi… species   
-#>  6 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Achnanthi… species   
-#>  7 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Eunotia m… variety   
-#>  8 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Navicula … species   
-#>  9 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Nitzschia… species   
-#> 10 HOPB.AOS.r… HOPB   2016-10-05 10:4… NEONDRE… Encyonema… species   
-#> # … with 90,214 more rows, and 18 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, sampleCondition <chr>,
+#> # A tibble: 114,340 × 25
+#>    location_id   siteID unique_sample_id observation_dateti… taxon_id taxon_name
+#>    <chr>         <chr>  <chr>            <dttm>              <chr>    <chr>     
+#>  1 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Nitzschia…
+#>  2 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Eunotia m…
+#>  3 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Psammothi…
+#>  4 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Achnanthi…
+#>  5 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Gomphonem…
+#>  6 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Planothid…
+#>  7 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Stauronei…
+#>  8 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Staurosir…
+#>  9 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Achnanthi…
+#> 10 HOPB.AOS.rea… HOPB   HOPB.20161005.E… 2016-10-05 10:45:00 NEONDRE… Nitzschia…
+#> # … with 114,330 more rows, and 19 more variables: taxon_rank <chr>,
+#> #   variable_name <chr>, value <dbl>, unit <chr>, sampleCondition <chr>,
 #> #   perBottleSampleVolume <chr>, release <chr>, habitatType <chr>,
 #> #   algalSampleType <chr>, benthicArea <chr>, samplingProtocolVersion <chr>,
 #> #   substratumSizeClass <chr>, samplerType <chr>, phytoDepth1 <chr>,
 #> #   phytoDepth2 <chr>, phytoDepth3 <chr>, latitude <dbl>, longitude <dbl>,
 #> #   elevation <dbl>
 neonDivData::data_beetle
-#> # A tibble: 65,605 x 20
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 ABBY_002.b… ABBY   ABBY_… 2016-09-13       PTELAM   Pterostic… species   
-#>  2 ABBY_002.b… ABBY   ABBY_… 2016-09-13       SYNAME   Syntomus … species   
-#>  3 ABBY_002.b… ABBY   ABBY_… 2016-09-27       AMAFAR   Amara far… species   
-#>  4 ABBY_002.b… ABBY   ABBY_… 2017-05-17       PTELAM   Pterostic… species   
-#>  5 ABBY_002.b… ABBY   ABBY_… 2017-05-31       OMUDEJ   Omus deje… species   
-#>  6 ABBY_002.b… ABBY   ABBY_… 2017-05-31       PTELAM   Pterostic… species   
-#>  7 ABBY_002.b… ABBY   ABBY_… 2017-06-14       SYNAME   Syntomus … species   
-#>  8 ABBY_002.b… ABBY   ABBY_… 2017-06-14       OMUDEJ   Omus deje… species   
-#>  9 ABBY_002.b… ABBY   ABBY_… 2017-06-28       HARINN   Harpalus … species   
-#> 10 ABBY_002.b… ABBY   ABBY_… 2018-05-01       NOTSYL   Notiophil… species   
-#> # … with 65,595 more rows, and 13 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, boutID <chr>, trapID <chr>, trappingDays <chr>,
-#> #   release <chr>, samplingProtocolVersion <chr>, nativeStatusCode <chr>,
-#> #   remarks <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>
+#> # A tibble: 71,660 × 22
+#>    location_id         siteID plotID unique_sample_id trapID observation_dateti…
+#>    <chr>               <chr>  <chr>  <chr>            <chr>  <dttm>             
+#>  1 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2016… E      2016-09-13 00:00:00
+#>  2 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2016… E      2016-09-13 00:00:00
+#>  3 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2016… E      2016-09-27 00:00:00
+#>  4 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-05-17 00:00:00
+#>  5 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-05-31 00:00:00
+#>  6 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-05-31 00:00:00
+#>  7 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-06-14 00:00:00
+#>  8 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-06-14 00:00:00
+#>  9 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2017… E      2017-06-28 00:00:00
+#> 10 ABBY_002.basePlot.… ABBY   ABBY_… ABBY_002.E.2018… E      2018-05-01 00:00:00
+#> # … with 71,650 more rows, and 16 more variables: taxon_id <chr>,
+#> #   taxon_name <chr>, taxon_rank <chr>, variable_name <chr>, value <dbl>,
+#> #   unit <chr>, boutID <chr>, nativeStatusCode <chr>, release <chr>,
+#> #   remarks <chr>, samplingProtocolVersion <chr>, trappingDays <chr>,
+#> #   latitude <dbl>, longitude <dbl>, elevation <dbl>, nlcdClass <chr>
 neonDivData::data_bird
-#> # A tibble: 186,431 x 28
-#>    location_id siteID plotID pointID observation_dat… taxon_id taxon_name
-#>    <chr>       <chr>  <chr>  <chr>   <chr>            <chr>    <chr>     
-#>  1 BART_025.b… BART   BART_… C1      2015-06-14 09:2… BAWW     Mniotilta…
-#>  2 BART_025.b… BART   BART_… C1      2015-06-14 09:2… REVI     Vireo oli…
-#>  3 BART_025.b… BART   BART_… C1      2015-06-14 09:2… BCCH     Poecile a…
-#>  4 BART_025.b… BART   BART_… C1      2015-06-14 09:2… BTNW     Setophaga…
-#>  5 BART_025.b… BART   BART_… C1      2015-06-14 09:2… BTNW     Setophaga…
-#>  6 BART_025.b… BART   BART_… B1      2015-06-14 09:4… WIWR     Troglodyt…
-#>  7 BART_025.b… BART   BART_… B1      2015-06-14 09:4… WIWR     Troglodyt…
-#>  8 BART_025.b… BART   BART_… B1      2015-06-14 09:4… BAWW     Mniotilta…
-#>  9 BART_025.b… BART   BART_… B1      2015-06-14 09:4… BTNW     Setophaga…
-#> 10 BART_025.b… BART   BART_… A1      2015-06-14 10:3… WIWR     Troglodyt…
-#> # … with 186,421 more rows, and 21 more variables: taxon_rank <chr>,
-#> #   variable_name <chr>, value <dbl>, unit <chr>, pointCountMinute <chr>,
-#> #   targetTaxaPresent <chr>, nativeStatusCode <chr>, observerDistance <chr>,
-#> #   detectionMethod <chr>, visualConfirmation <chr>, sexOrAge <chr>,
-#> #   release <chr>, observedHabitat <chr>, observedAirTemp <chr>,
-#> #   kmPerHourObservedWindSpeed <chr>, samplingProtocolVersion <chr>,
-#> #   remarks <chr>, clusterCode <chr>, latitude <dbl>, longitude <dbl>,
-#> #   elevation <dbl>
+#> # A tibble: 226,804 × 35
+#>    location_id        siteID plotID pointID unique_sample_id observation_dateti…
+#>    <chr>              <chr>  <chr>  <list>  <chr>            <dttm>             
+#>  1 BART_025.birdGrid… BART   BART_… <chr>   BART_025.C1.201… 2015-06-14 09:23:00
+#>  2 BART_025.birdGrid… BART   BART_… <chr>   BART_025.C1.201… 2015-06-14 09:23:00
+#>  3 BART_025.birdGrid… BART   BART_… <chr>   BART_025.C1.201… 2015-06-14 09:23:00
+#>  4 BART_025.birdGrid… BART   BART_… <chr>   BART_025.C1.201… 2015-06-14 09:23:00
+#>  5 BART_025.birdGrid… BART   BART_… <chr>   BART_025.C1.201… 2015-06-14 09:23:00
+#>  6 BART_025.birdGrid… BART   BART_… <chr>   BART_025.B1.201… 2015-06-14 09:43:00
+#>  7 BART_025.birdGrid… BART   BART_… <chr>   BART_025.B1.201… 2015-06-14 09:43:00
+#>  8 BART_025.birdGrid… BART   BART_… <chr>   BART_025.B1.201… 2015-06-14 09:43:00
+#>  9 BART_025.birdGrid… BART   BART_… <chr>   BART_025.B1.201… 2015-06-14 09:43:00
+#> 10 BART_025.birdGrid… BART   BART_… <chr>   BART_025.A1.201… 2015-06-14 10:31:00
+#> # … with 226,794 more rows, and 29 more variables: taxon_id <chr>,
+#> #   taxon_name <chr>, taxon_rank <chr>, variable_name <chr>, value <dbl>,
+#> #   unit <chr>, pointCountMinute <list>, targetTaxaPresent <list>,
+#> #   nativeStatusCode <list>, observerDistance <list>, detectionMethod <list>,
+#> #   visualConfirmation <list>, sexOrAge <list>, release <list>,
+#> #   startCloudCoverPercentage <list>, endCloudCoverPercentage <list>,
+#> #   startRH <list>, endRH <list>, observedHabitat <list>, …
 neonDivData::data_fish
-#> # A tibble: 5,341 x 26
-#>    location_id siteID pointID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>   <chr>            <chr>    <chr>      <chr>     
-#>  1 HOPB.AOS.f… HOPB   point.… 2017-05-01       RHIATR   Rhinichth… species   
-#>  2 HOPB.AOS.f… HOPB   point.… 2017-05-01       SALTRU   Salmo tru… species   
-#>  3 HOPB.AOS.f… HOPB   point.… 2017-05-01       SALFON   Salvelinu… species   
-#>  4 HOPB.AOS.f… HOPB   point.… 2017-10-23       RHIATR   Rhinichth… species   
-#>  5 HOPB.AOS.f… HOPB   point.… 2017-10-23       SALTRU   Salmo tru… species   
-#>  6 HOPB.AOS.f… HOPB   point.… 2017-10-23       SALFON   Salvelinu… species   
-#>  7 HOPB.AOS.f… HOPB   point.… 2017-10-23       SEMATR   Semotilus… species   
-#>  8 HOPB.AOS.f… HOPB   point.… 2019-05-06       RHIATR   Rhinichth… species   
-#>  9 HOPB.AOS.f… HOPB   point.… 2019-05-06       SALFON   Salvelinu… species   
-#> 10 HOPB.AOS.f… HOPB   point.… 2019-05-06       SEMATR   Semotilus… species   
-#> # … with 5,331 more rows, and 19 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, samplerType <chr>, fixedRandomReach <chr>,
+#> # A tibble: 6,639 × 29
+#>    location_id      siteID pointID unique_sample_id observation_dateti… taxon_id
+#>    <chr>            <chr>  <chr>   <chr>            <dttm>              <chr>   
+#>  1 HOPB.AOS.fish.p… HOPB   point.… HOPB.20170501.0… 2017-05-01 00:00:00 RHIATR  
+#>  2 HOPB.AOS.fish.p… HOPB   point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALTRU  
+#>  3 HOPB.AOS.fish.p… HOPB   point.… HOPB.20170501.0… 2017-05-01 00:00:00 SALFON  
+#>  4 HOPB.AOS.fish.p… HOPB   point.… HOPB.20171023.0… 2017-10-23 00:00:00 RHIATR  
+#>  5 HOPB.AOS.fish.p… HOPB   point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALTRU  
+#>  6 HOPB.AOS.fish.p… HOPB   point.… HOPB.20171023.0… 2017-10-23 00:00:00 SALFON  
+#>  7 HOPB.AOS.fish.p… HOPB   point.… HOPB.20171023.0… 2017-10-23 00:00:00 SEMATR  
+#>  8 HOPB.AOS.fish.p… HOPB   point.… HOPB.20190506.0… 2019-05-06 00:00:00 RHIATR  
+#>  9 HOPB.AOS.fish.p… HOPB   point.… HOPB.20190506.0… 2019-05-06 00:00:00 SALFON  
+#> 10 HOPB.AOS.fish.p… HOPB   point.… HOPB.20190506.0… 2019-05-06 00:00:00 SEMATR  
+#> # … with 6,629 more rows, and 23 more variables: taxon_name <chr>,
+#> #   taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>,
+#> #   reachID <chr>, samplerType <chr>, fixedRandomReach <chr>,
 #> #   measuredReachLength <chr>, efTime <chr>, passStartTime <chr>,
-#> #   passEndTime <chr>, mean_efishtime <chr>, netSetTime <chr>,
+#> #   passEndTime <chr>, mean_efishtime <chr>, release <chr>, netSetTime <chr>,
 #> #   netEndTime <chr>, netDeploymentTime <chr>, netLength <chr>, netDepth <chr>,
 #> #   efTime2 <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>
 neonDivData::data_herp_bycatch
-#> # A tibble: 2,385 x 20
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 BART_028.b… BART   BART_… 2014-06-12       PLECIN   Plethodon… species   
-#>  2 BART_002.b… BART   BART_… 2014-06-12       PLECIN   Plethodon… species   
-#>  3 BART_066.b… BART   BART_… 2014-06-12       PLECIN   Plethodon… species   
-#>  4 BART_031.b… BART   BART_… 2014-06-26       PLECIN   Plethodon… species   
-#>  5 BART_066.b… BART   BART_… 2014-06-26       PLECIN   Plethodon… species   
-#>  6 BART_068.b… BART   BART_… 2014-06-26       PLECIN   Plethodon… species   
-#>  7 BART_031.b… BART   BART_… 2014-07-10       PLECIN   Plethodon… species   
-#>  8 BART_002.b… BART   BART_… 2014-07-10       PLECIN   Plethodon… species   
-#>  9 BART_028.b… BART   BART_… 2014-07-10       PLECIN   Plethodon… species   
-#> 10 BART_028.b… BART   BART_… 2014-07-24       PLECIN   Plethodon… species   
-#> # … with 2,375 more rows, and 13 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, neon_event_id <chr>, trappingDays <chr>,
-#> #   release <chr>, nativeStatusCode <chr>, neon_trap_id <chr>,
+#> # A tibble: 2,732 × 22
+#>    location_id         siteID plotID unique_sample_id trapID observation_dateti…
+#>    <chr>               <chr>  <chr>  <chr>            <chr>  <dttm>             
+#>  1 BART_066.basePlot.… BART   BART_… BART_066.E.2014… E      2014-06-12 00:00:00
+#>  2 BART_002.basePlot.… BART   BART_… BART_002.W.2014… W      2014-06-12 00:00:00
+#>  3 BART_028.basePlot.… BART   BART_… BART_028.W.2014… W      2014-06-12 00:00:00
+#>  4 BART_066.basePlot.… BART   BART_… BART_066.N.2014… N      2014-06-26 00:00:00
+#>  5 BART_031.basePlot.… BART   BART_… BART_031.E.2014… E      2014-06-26 00:00:00
+#>  6 BART_068.basePlot.… BART   BART_… BART_068.W.2014… W      2014-06-26 00:00:00
+#>  7 BART_028.basePlot.… BART   BART_… BART_028.N.2014… N      2014-07-10 00:00:00
+#>  8 BART_002.basePlot.… BART   BART_… BART_002.N.2014… N      2014-07-10 00:00:00
+#>  9 BART_031.basePlot.… BART   BART_… BART_031.S.2014… S      2014-07-10 00:00:00
+#> 10 BART_068.basePlot.… BART   BART_… BART_068.E.2014… E      2014-07-24 00:00:00
+#> # … with 2,722 more rows, and 16 more variables: taxon_id <chr>,
+#> #   taxon_name <chr>, taxon_rank <chr>, variable_name <chr>, value <dbl>,
+#> #   unit <chr>, trappingDays <chr>, release <chr>, nativeStatusCode <chr>,
 #> #   remarksSorting <chr>, remarksFielddata <chr>, latitude <dbl>,
-#> #   longitude <dbl>, elevation <dbl>
+#> #   longitude <dbl>, elevation <dbl>, plotType <chr>, nlcdClass <chr>
 neonDivData::data_macroinvertebrate
-#> # A tibble: 134,728 x 23
-#>    location_id siteID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 HOPB.AOS.r… HOPB   2016-10-11 14:3… STISP4   Stilobezz… genus     
-#>  2 HOPB.AOS.r… HOPB   2016-10-11 14:3… EMPSP    Empididae… family    
-#>  3 HOPB.AOS.r… HOPB   2016-10-11 14:3… PSEHER   Psephenus… species   
-#>  4 HOPB.AOS.r… HOPB   2016-10-11 14:3… LEPSP4   Leptophle… family    
-#>  5 HOPB.AOS.r… HOPB   2016-10-11 14:3… CAPSP2   Capniidae… family    
-#>  6 HOPB.AOS.r… HOPB   2016-10-11 14:3… THIGRO   Thieneman… speciesGr…
-#>  7 HOPB.AOS.r… HOPB   2016-10-11 14:3… NAISP1   Nais sp.   genus     
-#>  8 HOPB.AOS.r… HOPB   2016-10-11 14:3… ACESP1   Acerpenna… genus     
-#>  9 HOPB.AOS.r… HOPB   2016-10-11 14:3… LEUSP8   Leuctra s… genus     
-#> 10 HOPB.AOS.r… HOPB   2016-10-11 14:3… HEPSP    Heptageni… family    
-#> # … with 134,718 more rows, and 17 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, subsamplePercent <chr>, release <chr>,
+#> # A tibble: 106,641 × 25
+#>    location_id   siteID unique_sample_id observation_dateti… taxon_id taxon_name
+#>    <chr>         <chr>  <chr>            <dttm>              <chr>    <chr>     
+#>  1 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 ABLSP    Ablabesmy…
+#>  2 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 BAESP    Baetidae …
+#>  3 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CAESP5   Caenis sp.
+#>  4 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CALFLU   Callibaet…
+#>  5 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CERSP18  Ceratopog…
+#>  6 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CHISP2   Chironomi…
+#>  7 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CHISP8   Chironomu…
+#>  8 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CLISP3   Clinotany…
+#>  9 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 COESP    Coenagrio…
+#> 10 ARIK.AOS.rea… ARIK   ARIK.20140714.C… 2014-07-14 17:51:00 CORSP4   Corixidae…
+#> # … with 106,631 more rows, and 19 more variables: taxon_rank <chr>,
+#> #   variable_name <chr>, value <dbl>, unit <chr>, estimatedTotalCount <chr>,
+#> #   individualCount <chr>, subsamplePercent <chr>, release <chr>,
 #> #   benthicArea <chr>, habitatType <chr>, samplerType <chr>,
-#> #   substratumSizeClass <chr>, neon_sample_id <chr>, remarks <chr>,
-#> #   ponarDepth <chr>, snagLength <chr>, snagDiameter <chr>, latitude <dbl>,
-#> #   longitude <dbl>, elevation <dbl>
+#> #   substratumSizeClass <chr>, remarks <chr>, ponarDepth <dbl>,
+#> #   snagLength <dbl>, snagDiameter <dbl>, latitude <dbl>, longitude <dbl>,
+#> #   elevation <dbl>
 neonDivData::data_mosquito
-#> # A tibble: 96,843 x 23
-#>    location_id siteID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 BART_059.m… BART   2014-06-03 10:1… AEDABS   Aedes abs… species   
-#>  2 BART_059.m… BART   2014-06-03 10:1… AEDCOM   Aedes com… species   
-#>  3 BART_059.m… BART   2014-06-03 10:1… AEDINT   Aedes int… species   
-#>  4 BART_058.m… BART   2014-06-03 11:1… AEDINT   Aedes int… species   
-#>  5 BART_058.m… BART   2014-06-03 11:1… AEDCOM   Aedes com… species   
-#>  6 BART_060.m… BART   2014-06-03 11:0… AEDINT   Aedes int… species   
-#>  7 BART_060.m… BART   2014-06-03 11:0… AEDABS   Aedes abs… species   
-#>  8 BART_060.m… BART   2014-06-03 11:0… AEDCOM   Aedes com… species   
-#>  9 BART_054.m… BART   2014-06-03 10:5… AEDCAN2  Aedes can… species   
-#> 10 BART_054.m… BART   2014-06-03 10:5… AEDABS   Aedes abs… species   
-#> # … with 96,833 more rows, and 17 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, sortDate <chr>, sampleID <chr>, subsampleID <chr>,
-#> #   totalWeight <chr>, subsampleWeight <chr>, release <chr>, trapHours <chr>,
-#> #   samplingProtocolVersion <chr>, nativeStatusCode <chr>, sex <chr>,
+#> # A tibble: 109,212 × 26
+#>    location_id     siteID unique_sample_id subsampleID observation_dat… taxon_id
+#>    <chr>           <chr>  <chr>            <chr>       <date>           <chr>   
+#>  1 BART_059.mosqu… BART   BART_059.201406… BART_059.2… 2014-06-03       AEDCOM  
+#>  2 BART_059.mosqu… BART   BART_059.201406… BART_059.2… 2014-06-03       AEDABS  
+#>  3 BART_059.mosqu… BART   BART_059.201406… BART_059.2… 2014-06-03       AEDINT  
+#>  4 BART_058.mosqu… BART   BART_058.201406… BART_058.2… 2014-06-03       AEDINT  
+#>  5 BART_058.mosqu… BART   BART_058.201406… BART_058.2… 2014-06-03       AEDCOM  
+#>  6 BART_060.mosqu… BART   BART_060.201406… BART_060.2… 2014-06-03       AEDCOM  
+#>  7 BART_060.mosqu… BART   BART_060.201406… BART_060.2… 2014-06-03       AEDABS  
+#>  8 BART_060.mosqu… BART   BART_060.201406… BART_060.2… 2014-06-03       AEDINT  
+#>  9 BART_054.mosqu… BART   BART_054.201406… BART_054.2… 2014-06-03       AEDCOM  
+#> 10 BART_054.mosqu… BART   BART_054.201406… BART_054.2… 2014-06-03       AEDINT  
+#> # … with 109,202 more rows, and 20 more variables: taxon_name <chr>,
+#> #   taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>,
+#> #   nativeStatusCode <chr>, release <chr>, remarks_sorting <chr>,
+#> #   samplingProtocolVersion <chr>, sex <chr>, sortDate <chr>,
+#> #   subsampleWeight <chr>, totalWeight <chr>, trapHours <chr>,
 #> #   weightBelowDetection <chr>, latitude <dbl>, longitude <dbl>,
-#> #   elevation <dbl>
+#> #   elevation <dbl>, nlcdClass <chr>, plotType <chr>
 neonDivData::data_plant
-#> # A tibble: 915,205 x 23
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 BART_006.b… BART   BART_… 2014-06-10       VILA11   Viburnum … species   
-#>  2 BART_006.b… BART   BART_… 2014-06-10       ACSA3    Acer sacc… species   
-#>  3 BART_006.b… BART   BART_… 2014-06-10       FAGR     Fagus gra… species   
-#>  4 BART_006.b… BART   BART_… 2014-06-10       FAGR     Fagus gra… species   
-#>  5 BART_006.b… BART   BART_… 2014-06-10       FAGR     Fagus gra… species   
-#>  6 BART_006.b… BART   BART_… 2014-06-10       FAGR     Fagus gra… species   
-#>  7 BART_006.b… BART   BART_… 2014-06-10       ACSA3    Acer sacc… species   
-#>  8 BART_006.b… BART   BART_… 2014-06-10       FAGR     Fagus gra… species   
-#>  9 BART_006.b… BART   BART_… 2014-06-10       ACPE     Acer pens… species   
-#> 10 BART_006.b… BART   BART_… 2014-06-10       ACSA3    Acer sacc… species   
-#> # … with 915,195 more rows, and 16 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, presence_absence <dbl>, subplotID <chr>,
-#> #   subplot_id <chr>, subsubplot_id <chr>, boutNumber <chr>,
-#> #   nativeStatusCode <chr>, heightPlantOver300cm <chr>,
-#> #   heightPlantSpecies <chr>, release <chr>, sample_area_m2 <chr>,
-#> #   latitude <dbl>, longitude <dbl>, elevation <dbl>
+#> # A tibble: 1,034,093 × 26
+#>    location_id siteID plotID unique_sample_id subplotID subplot_id subsubplot_id
+#>    <chr>       <chr>  <chr>  <chr>            <chr>     <chr>      <chr>        
+#>  1 BART_006.b… BART   BART_… BART_006.basePl… 31.4.1    31         4            
+#>  2 BART_006.b… BART   BART_… BART_006.basePl… 31.4.1    31         4            
+#>  3 BART_006.b… BART   BART_… BART_006.basePl… 41.1.1    41         1            
+#>  4 BART_006.b… BART   BART_… BART_006.basePl… 41.4.1    41         4            
+#>  5 BART_006.b… BART   BART_… BART_006.basePl… 41.4.1    41         4            
+#>  6 BART_006.b… BART   BART_… BART_006.basePl… 41.4.1    41         4            
+#>  7 BART_006.b… BART   BART_… BART_006.basePl… 32.2.1    32         2            
+#>  8 BART_006.b… BART   BART_… BART_006.basePl… 41.1.1    41         1            
+#>  9 BART_006.b… BART   BART_… BART_006.basePl… 32.4.1    32         4            
+#> 10 BART_006.b… BART   BART_… BART_006.basePl… 32.4.1    32         4            
+#> # … with 1,034,083 more rows, and 19 more variables:
+#> #   observation_datetime <dttm>, taxon_id <chr>, taxon_name <chr>,
+#> #   taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>,
+#> #   presence_absence <dbl>, boutNumber <chr>, nativeStatusCode <chr>,
+#> #   heightPlantOver300cm <chr>, heightPlantSpecies <chr>, release <chr>,
+#> #   sample_area_m2 <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>,
+#> #   plotType <chr>, nlcdClass <chr>
 neonDivData::data_small_mammal
-#> # A tibble: 15,275 x 19
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 HARV_001.m… HARV   HARV_… 2013-10-03       BLBR     Blarina b… species   
-#>  2 HARV_001.m… HARV   HARV_… 2013-10-03       NAIN     Napaeozap… species   
-#>  3 HARV_001.m… HARV   HARV_… 2013-10-03       PELE     Peromyscu… species   
-#>  4 HARV_001.m… HARV   HARV_… 2013-10-03       PEMA     Peromyscu… species   
-#>  5 HARV_001.m… HARV   HARV_… 2013-10-03       SOCI     Sorex cin… species   
-#>  6 HARV_001.m… HARV   HARV_… 2013-10-03       TAST     Tamias st… species   
-#>  7 HARV_006.m… HARV   HARV_… 2013-10-03       PELE     Peromyscu… species   
-#>  8 HARV_006.m… HARV   HARV_… 2013-10-03       PEMA     Peromyscu… species   
-#>  9 HARV_006.m… HARV   HARV_… 2013-10-03       PESP     Peromyscu… genus     
-#> 10 HARV_006.m… HARV   HARV_… 2013-10-03       TAST     Tamias st… species   
-#> # … with 15,265 more rows, and 12 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, year <chr>, month <chr>,
-#> #   n_trap_nights_per_bout_per_plot <chr>, n_nights_per_bout <chr>,
-#> #   nativeStatusCode <chr>, release <chr>, latitude <dbl>, longitude <dbl>,
-#> #   elevation <dbl>
+#> # A tibble: 17,279 × 22
+#>    location_id          siteID plotID unique_sample_id observation_dat… taxon_id
+#>    <chr>                <chr>  <chr>  <chr>            <date>           <chr>   
+#>  1 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2016-08-27       MIOR    
+#>  2 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2016-08-27       PEKE    
+#>  3 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2016-08-27       PEMA    
+#>  4 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2016-08-27       SOMO    
+#>  5 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       MIOR    
+#>  6 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       PEMA    
+#>  7 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       SOMO    
+#>  8 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       SOSP    
+#>  9 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       SOTR    
+#> 10 ABBY_002.mammalGrid… ABBY   ABBY_… ABBY_002.mammal… 2017-04-23       SOVA    
+#> # … with 17,269 more rows, and 16 more variables: taxon_name <chr>,
+#> #   taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>, year <chr>,
+#> #   month <chr>, n_trap_nights_per_bout_per_plot <chr>,
+#> #   n_nights_per_bout <chr>, nativeStatusCode <chr>, release <chr>,
+#> #   latitude <dbl>, longitude <dbl>, elevation <dbl>, plotType <chr>,
+#> #   nlcdClass <chr>
 neonDivData::data_tick
-#> # A tibble: 123,060 x 20
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOSP2   Ixodida s… order     
-#>  2 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOSPP   Ixodidae … family    
-#>  3 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOSP    Ixodidae … family    
-#>  4 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOSCA   Ixodes sc… species   
-#>  5 BART_011.t… BART   BART_… 2014-06-02 18:3… AMBAME   Amblyomma… species   
-#>  6 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOANG   Ixodes an… species   
-#>  7 BART_011.t… BART   BART_… 2014-06-02 18:3… IXOPAC   Ixodes pa… species   
-#>  8 BART_011.t… BART   BART_… 2014-06-02 18:3… DERVAR   Dermacent… species   
-#>  9 BART_011.t… BART   BART_… 2014-06-02 18:3… AMBAME   Amblyomma… species   
-#> 10 BART_011.t… BART   BART_… 2014-06-02 18:3… HAELON   Haemaphys… species   
-#> # … with 123,050 more rows, and 13 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, neon_event_id <chr>, samplingMethod <chr>,
-#> #   totalSampledArea <chr>, targetTaxaPresent <chr>, release <chr>,
-#> #   LifeStage <chr>, remarks_field <chr>, latitude <dbl>, longitude <dbl>,
-#> #   elevation <dbl>
+#> # A tibble: 357,235 × 22
+#>    location_id       siteID plotID unique_sample_id observation_dateti… taxon_id
+#>    <chr>             <chr>  <chr>  <chr>            <dttm>              <chr>   
+#>  1 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP   
+#>  2 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA  
+#>  3 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBAME  
+#>  4 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBSPP  
+#>  5 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSP2  
+#>  6 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOANG  
+#>  7 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOPAC  
+#>  8 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 DERVAR  
+#>  9 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 IXOSCA  
+#> 10 ABBY_001.tickPlo… ABBY   ABBY_… ABBY_001_2016-0… 2016-09-22 18:12:00 AMBAME  
+#> # … with 357,225 more rows, and 16 more variables: taxon_name <chr>,
+#> #   taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>,
+#> #   LifeStage <chr>, release <chr>, remarks_field <chr>, samplingMethod <chr>,
+#> #   targetTaxaPresent <chr>, totalSampledArea <chr>, latitude <dbl>,
+#> #   longitude <dbl>, elevation <dbl>, nlcdClass <chr>, plotType <chr>
 neonDivData::data_tick_pathogen
-#> # A tibble: 6,498 x 17
-#>    location_id siteID plotID observation_dat… taxon_id taxon_name taxon_rank
-#>    <chr>       <chr>  <chr>  <chr>            <chr>    <chr>      <chr>     
-#>  1 HARV_001.t… HARV   HARV_… 2014-06-02 16:1… Borreli… Borrelia … species   
-#>  2 HARV_001.t… HARV   HARV_… 2014-06-24 13:5… Borreli… Borrelia … species   
-#>  3 HARV_001.t… HARV   HARV_… 2014-07-14 17:5… Borreli… Borrelia … species   
-#>  4 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Anaplas… Anaplasma… species   
-#>  5 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Babesia… Babesia m… species   
-#>  6 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Borreli… Borrelia … species   
-#>  7 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Borreli… Borrelia … species   
-#>  8 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Borreli… Borrelia … species   
-#>  9 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Borreli… Borrelia … species   
-#> 10 HARV_022.t… HARV   HARV_… 2015-06-03 13:3… Borreli… Borrelia … genus     
-#> # … with 6,488 more rows, and 10 more variables: variable_name <chr>,
-#> #   value <dbl>, unit <chr>, lifeStage <chr>, batchID <chr>,
-#> #   testProtocolVersion <chr>, release <chr>, latitude <dbl>, longitude <dbl>,
-#> #   elevation <dbl>
+#> # A tibble: 8,490 × 21 +#> location_id siteID plotID unique_sample_id observation_dateti… taxon_id +#> <chr> <chr> <chr> <chr> <dttm> <chr> +#> 1 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-06-02 16:10:00 Borreli… +#> 2 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-06-24 13:50:00 Borreli… +#> 3 HARV_001.tickPlo… HARV HARV_… HARV_001.tickPl… 2014-07-14 17:53:00 Borreli… +#> 4 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Anaplas… +#> 5 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Babesia… +#> 6 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 7 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 8 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 9 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Borreli… +#> 10 HARV_022.tickPlo… HARV HARV_… HARV_022.tickPl… 2015-06-03 13:30:00 Ehrlich… +#> # … with 8,480 more rows, and 15 more variables: taxon_name <chr>, +#> # taxon_rank <chr>, variable_name <chr>, value <dbl>, unit <chr>, +#> # lifeStage <chr>, testProtocolVersion <chr>, release <chr>, n_tests <chr>, +#> # n_positive_tests <chr>, latitude <dbl>, longitude <dbl>, elevation <dbl>, +#> # nlcdClass <chr>, plotType <chr>
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 0424d73..2c75b10 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -2,5 +2,5 @@ pandoc: 2.17.1.1 pkgdown: 2.0.2 pkgdown_sha: ~ articles: {} -last_built: 2022-03-28T22:03Z +last_built: 2022-03-28T22:26Z