From cce723c30b98e3c4fb8b4fb9e1e643964af31c2d Mon Sep 17 00:00:00 2001 From: Ryan Corbett Date: Tue, 16 Apr 2024 15:24:53 -0400 Subject: [PATCH 1/4] update number formatting for forest plots --- .../util/survival_models_interaction.R | 41 ++++++++++--------- 1 file changed, 22 insertions(+), 19 deletions(-) diff --git a/analyses/survival/util/survival_models_interaction.R b/analyses/survival/util/survival_models_interaction.R index 55729de0..f8433070 100644 --- a/analyses/survival/util/survival_models_interaction.R +++ b/analyses/survival/util/survival_models_interaction.R @@ -583,7 +583,8 @@ plotForest <- function(model) { scale_x_log10() + ggpubr::theme_pubr() + theme( - plot.subtitle = element_text(face = "bold") + plot.subtitle = element_text(face = "bold"), + plot.margin = margin(r=6, unit = "pt") ) + # grid makes it easier to follow lines cowplot::background_grid() @@ -597,16 +598,18 @@ plotForest <- function(model) { mutate( # Clean pvalues into labels. p_string = if_else( - p.value >= 0.001, - paste0("P = ",round(p.value,3)), - "P < 0.001" + p.value >= 0.01, + paste0("P = ", format(round(p.value, 2), nsmall = 2)), + "P < 0.01" ), - # round to 2 digits and create single string with "hr (low-high)" - conf.low = signif(conf.low, 2), - conf.high = signif(conf.high, 2), - estimate = signif(estimate, 2), + conf.low = format(round(conf.low, 2), nsmall = 2), + conf.high = format(round(conf.high, 2), nsmall = 2), + estimate = format(round(estimate, 2), nsmall = 2), hr_ci = glue::glue("{estimate} ({conf.low} - {conf.high})") ) %>% + dplyr::mutate(hr_ci = str_replace_all(hr_ci, " - ", "-"), + hr_ci = str_replace_all(hr_ci, " ", ""), + hr_ci = str_replace_all(hr_ci, "- ", "-")) %>% dplyr::select(term, hr_ci, p_string) %>% # this throws a warning but it's ok # format tibble for plotting @@ -616,17 +619,13 @@ plotForest <- function(model) { labels_panel <- ggplot(survival_df_spread) + aes(x = name, y = term, label = value) + - geom_text(hjust = 0, size = 3) + - labs( - # hack! - subtitle = paste0(" ", - "HR (95% CI) P-value") - ) + + geom_text(hjust = 0, size = 3, + nudge_x = -0.5) + ggpubr::theme_pubr() + # remove axes. theme( axis.title.x = element_blank(), - axis.text.x = element_blank(), + axis.text.x = element_text(face = "bold"), axis.ticks.x = element_blank(), axis.line.x = element_blank(), axis.title.y = element_blank(), @@ -634,11 +633,15 @@ plotForest <- function(model) { axis.ticks.y = element_blank(), axis.line.y = element_blank(), # -26 is as low as we can go before plot starts to get coverd - plot.margin = margin(6, 0, 36, -25, unit = "pt"), - plot.subtitle = element_text(face = "bold") - ) + plot.margin = margin(6, 0, 6, 0, unit = "pt"), + # plot.subtitle = element_text(face = "bold") + ) + + scale_x_discrete(labels = c(" HR (95% CI) ", + "P-value "), + position = "top") - forest_panels <- cowplot::plot_grid(forest_plot, labels_panel, nrow = 1, rel_widths = c(1,0.5), scale = 0.95) + forest_panels <- cowplot::plot_grid(forest_plot, labels_panel, nrow = 1, rel_widths = c(1,0.5), + scale = 1, align = "h", hjust = 0, ncol = 2) print(forest_panels) } From d4de6c8d81a09d5e5d24e37ae90647d835f02083 Mon Sep 17 00:00:00 2001 From: Ryan Corbett Date: Tue, 16 Apr 2024 15:26:33 -0400 Subject: [PATCH 2/4] update breakpoint exon formatting --- .../braf-fusions/01-get-breakpoint-exons.Rmd | 8 +- .../braf-fusions/01-get-breakpoint-exons.html | 125 +++-- .../02-fusion-breakpoints-by-ancestry.Rmd | 43 +- .../02-fusion-breakpoints-by-ancestry.html | 208 ++++----- ...eakpoint_group_ancestry_ct_enr_heatmap.pdf | Bin 6363 -> 6364 bytes ...nt_group_methyl_subtype_ct_enr_heatmap.pdf | Bin 6214 -> 6214 bytes ...breakpoint_group_region_ct_enr_heatmap.pdf | Bin 6646 -> 6661 bytes ...akpoint_group_resection_ct_enr_heatmap.pdf | Bin 6052 -> 6054 bytes .../plots/rare_breakpoints_by_ancestry.pdf | Bin 6147 -> 6149 bytes .../braf-fusion-breakpoints-by-patient.tsv | 440 +++++++++--------- .../results/braf-fusions-exon-annotation.tsv | 332 ++++++------- .../lgg-braf-fusion-breakpoint-annotation.tsv | 346 +++++++------- ...lgg-braf-fusion-common-breakpoint-freq.tsv | 4 +- 13 files changed, 746 insertions(+), 760 deletions(-) diff --git a/analyses/braf-fusions/01-get-breakpoint-exons.Rmd b/analyses/braf-fusions/01-get-breakpoint-exons.Rmd index 38a3ef53..8c47bc23 100644 --- a/analyses/braf-fusions/01-get-breakpoint-exons.Rmd +++ b/analyses/braf-fusions/01-get-breakpoint-exons.Rmd @@ -148,10 +148,14 @@ braf_fusions <- braf_fusions %>% FusionName == "KIAA1549--BRAF" ~ glue::glue("{left_exon_rank}:{right_exon_rank}"), FusionName == "BRAF--KIAA1549" ~ glue::glue("{right_exon_rank}:{left_exon_rank}") )) %>% - dplyr::select(-subjectHits, -queryHits) + dplyr::select(-subjectHits, -queryHits) %>% + dplyr::mutate(breakpoint_exons = str_replace( + str_replace(breakpoint_exons, + ":8", ":08"), + ":9", ":09")) # add column indicating if breakpoint is common or rare/novel -common_breakpoints <- c("16:9", "15:9", "16:11", "18:10") +common_breakpoints <- c("16:09", "15:09", "16:11", "18:10") braf_fusions <- braf_fusions %>% dplyr::mutate(breakpoint_type = case_when( diff --git a/analyses/braf-fusions/01-get-breakpoint-exons.html b/analyses/braf-fusions/01-get-breakpoint-exons.html index 367e4ade..0c9d4821 100644 --- a/analyses/braf-fusions/01-get-breakpoint-exons.html +++ b/analyses/braf-fusions/01-get-breakpoint-exons.html @@ -432,41 +432,24 @@

2024

Load libraries and set directories

library(data.table)
 library(tidyverse)
-
## ── Attaching core tidyverse packages ──────────────────────────────────────────────────────────────────────────────────── tidyverse 2.0.0 ──
-## ✔ dplyr     1.1.1     ✔ readr     2.1.4
-## ✔ forcats   1.0.0     ✔ stringr   1.5.0
-## ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-## ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-## ✔ purrr     1.0.1     
-## ── Conflicts ────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
-## ✖ dplyr::between()     masks data.table::between()
-## ✖ dplyr::filter()      masks stats::filter()
-## ✖ dplyr::first()       masks data.table::first()
-## ✖ lubridate::hour()    masks data.table::hour()
-## ✖ lubridate::isoweek() masks data.table::isoweek()
-## ✖ dplyr::lag()         masks stats::lag()
-## ✖ dplyr::last()        masks data.table::last()
-## ✖ lubridate::mday()    masks data.table::mday()
-## ✖ lubridate::minute()  masks data.table::minute()
-## ✖ lubridate::month()   masks data.table::month()
-## ✖ lubridate::quarter() masks data.table::quarter()
-## ✖ lubridate::second()  masks data.table::second()
-## ✖ purrr::transpose()   masks data.table::transpose()
-## ✖ lubridate::wday()    masks data.table::wday()
-## ✖ lubridate::week()    masks data.table::week()
-## ✖ lubridate::yday()    masks data.table::yday()
-## ✖ lubridate::year()    masks data.table::year()
-## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
+
## ── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
+## ✔ ggplot2 3.4.0     ✔ purrr   1.0.1
+## ✔ tibble  3.1.8     ✔ dplyr   1.1.0
+## ✔ tidyr   1.3.0     ✔ stringr 1.5.0
+## ✔ readr   2.1.3     ✔ forcats 1.0.0
+## ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
+## ✖ dplyr::between()   masks data.table::between()
+## ✖ dplyr::filter()    masks stats::filter()
+## ✖ dplyr::first()     masks data.table::first()
+## ✖ dplyr::lag()       masks stats::lag()
+## ✖ dplyr::last()      masks data.table::last()
+## ✖ purrr::transpose() masks data.table::transpose()
library(GenomicRanges)
## Loading required package: stats4
 ## Loading required package: BiocGenerics
 ## 
 ## Attaching package: 'BiocGenerics'
 ## 
-## The following objects are masked from 'package:lubridate':
-## 
-##     intersect, setdiff, union
-## 
 ## The following objects are masked from 'package:dplyr':
 ## 
 ##     combine, intersect, setdiff, union
@@ -488,10 +471,6 @@ 
2024

 ## 
 ## Attaching package: 'S4Vectors'
 ## 
-## The following objects are masked from 'package:lubridate':
-## 
-##     second, second<-
-## 
 ## The following objects are masked from 'package:dplyr':
 ## 
 ##     first, rename
@@ -512,10 +491,6 @@ 
2024

 ## 
 ## Attaching package: 'IRanges'
 ## 
-## The following object is masked from 'package:lubridate':
-## 
-##     %within%
-## 
 ## The following objects are masked from 'package:dplyr':
 ## 
 ##     collapse, desc, slice
@@ -543,7 +518,7 @@ 
2024

 
braf_fusions <- read_tsv(fusion_file) %>%
   dplyr::filter(FusionName %in% c("KIAA1549--BRAF", "BRAF--KIAA1549"))

 
## Rows: 81348 Columns: 22
-## ── Column specification ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
 ## chr (20): Sample, FusionName, LeftBreakpoint, RightBreakpoint, DomainRetaine...
 ## dbl  (1): caller.count
@@ -592,6 +567,9 @@ 
2024

   # add row ids to be used when assessing breakpoint-exon overlaps
   dplyr::mutate(subjectHits = row_number())

 
## Joining with `by = join_by(ensembl_exon_id)`

+
## Warning in left_join(., exons_structure_bm[, c("ensembl_exon_id", "exon_chrom_start", : Each row in `x` is expected to match at most 1 row in `y`.
+## ℹ Row 27 of `x` matches multiple rows.
+## ℹ If multiple matches are expected, set `multiple = "all"` to silence this warning.

 
Create exon GRanges object

 
exon_granges <- GRanges(
   seqnames = exons_bm$chromosome_name,
@@ -634,11 +612,15 @@ 
2024

     FusionName == "KIAA1549--BRAF" ~ glue::glue("{left_exon_rank}:{right_exon_rank}"),
     FusionName == "BRAF--KIAA1549" ~ glue::glue("{right_exon_rank}:{left_exon_rank}")
     )) %>%
-  dplyr::select(-subjectHits, -queryHits)

+  dplyr::select(-subjectHits, -queryHits) %>%
+  dplyr::mutate(breakpoint_exons = str_replace(
+                                              str_replace(breakpoint_exons,
+                                               ":8", ":08"),
+                                              ":9", ":09"))
## Joining with `by = join_by(queryHits)`
 ## Joining with `by = join_by(queryHits)`
# add column indicating if breakpoint is common or rare/novel
-common_breakpoints <- c("16:9", "15:9", "16:11", "18:10")
+common_breakpoints <- c("16:09", "15:09", "16:11", "18:10")
 
 braf_fusions <- braf_fusions %>%
   dplyr::mutate(breakpoint_type = case_when(
@@ -650,9 +632,9 @@ 
2024

           file.path(results_dir, "braf-fusions-exon-annotation.tsv"))

Print session info

sessionInfo()
-
## R version 4.2.3 (2023-03-15)
+
## R version 4.2.2 (2022-10-31)
 ## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.3 LTS
+## Running under: Ubuntu 22.04.1 LTS
 ## 
 ## Matrix products: default
 ## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
@@ -673,35 +655,40 @@ 
2024

 ## other attached packages:
 ##  [1] biomaRt_2.54.1       GenomicRanges_1.50.2 GenomeInfoDb_1.34.9 
 ##  [4] IRanges_2.32.0       S4Vectors_0.36.2     BiocGenerics_0.44.0 
-##  [7] lubridate_1.9.2      forcats_1.0.0        stringr_1.5.0       
-## [10] dplyr_1.1.1          purrr_1.0.1          readr_2.1.4         
-## [13] tidyr_1.3.0          tibble_3.2.1         ggplot2_3.4.2       
-## [16] tidyverse_2.0.0      data.table_1.14.8   
+##  [7] forcats_1.0.0        stringr_1.5.0        dplyr_1.1.0         
+## [10] purrr_1.0.1          readr_2.1.3          tidyr_1.3.0         
+## [13] tibble_3.1.8         ggplot2_3.4.0        tidyverse_1.3.2     
+## [16] data.table_1.15.0   
 ## 
 ## loaded via a namespace (and not attached):
-##  [1] Biobase_2.58.0         httr_1.4.5             sass_0.4.5            
-##  [4] bit64_4.0.5            vroom_1.6.1            jsonlite_1.8.4        
-##  [7] bslib_0.4.2            BiocFileCache_2.6.1    blob_1.2.4            
-## [10] GenomeInfoDbData_1.2.9 yaml_2.3.7             progress_1.2.2        
-## [13] pillar_1.9.0           RSQLite_2.3.1          glue_1.6.2            
-## [16] digest_0.6.31          XVector_0.38.0         colorspace_2.1-0      
-## [19] htmltools_0.5.5        XML_3.99-0.14          pkgconfig_2.0.3       
-## [22] zlibbioc_1.44.0        scales_1.2.1           tzdb_0.3.0            
-## [25] timechange_0.2.0       KEGGREST_1.38.0        generics_0.1.3        
-## [28] cachem_1.0.7           withr_2.5.0            cli_3.6.1             
-## [31] magrittr_2.0.3         crayon_1.5.2           memoise_2.0.1         
-## [34] evaluate_0.20          fansi_1.0.4            xml2_1.3.3            
-## [37] tools_4.2.3            prettyunits_1.1.1      hms_1.1.3             
-## [40] lifecycle_1.0.3        munsell_0.5.0          AnnotationDbi_1.60.2  
-## [43] Biostrings_2.66.0      compiler_4.2.3         jquerylib_0.1.4       
-## [46] rlang_1.1.0            grid_4.2.3             RCurl_1.98-1.12       
-## [49] rappdirs_0.3.3         bitops_1.0-7           rmarkdown_2.21        
-## [52] gtable_0.3.3           DBI_1.1.3              curl_5.0.0            
-## [55] R6_2.5.1               knitr_1.42             fastmap_1.1.1         
-## [58] bit_4.0.5              utf8_1.2.3             filelock_1.0.2        
-## [61] rprojroot_2.0.3        stringi_1.7.12         parallel_4.2.3        
-## [64] vctrs_0.6.2            png_0.1-8              dbplyr_2.3.2          
-## [67] tidyselect_1.2.0       xfun_0.38

+##  [1] bitops_1.0-7           fs_1.6.0               lubridate_1.9.1       
+##  [4] bit64_4.0.5            filelock_1.0.3         progress_1.2.2        
+##  [7] httr_1.4.4             rprojroot_2.0.3        tools_4.2.2           
+## [10] backports_1.4.1        bslib_0.4.2            utf8_1.2.3            
+## [13] R6_2.5.1               DBI_1.1.3              colorspace_2.1-0      
+## [16] withr_2.5.0            tidyselect_1.2.0       prettyunits_1.1.1     
+## [19] curl_5.0.0             bit_4.0.5              compiler_4.2.2        
+## [22] cli_3.6.0              rvest_1.0.3            Biobase_2.58.0        
+## [25] xml2_1.3.3             sass_0.4.5             scales_1.2.1          
+## [28] rappdirs_0.3.3         digest_0.6.31          rmarkdown_2.20        
+## [31] XVector_0.38.0         pkgconfig_2.0.3        htmltools_0.5.4       
+## [34] dbplyr_2.3.0           fastmap_1.1.0          rlang_1.0.6           
+## [37] readxl_1.4.1           RSQLite_2.2.20         jquerylib_0.1.4       
+## [40] generics_0.1.3         jsonlite_1.8.4         vroom_1.6.1           
+## [43] googlesheets4_1.0.1    RCurl_1.98-1.14        magrittr_2.0.3        
+## [46] GenomeInfoDbData_1.2.9 Rcpp_1.0.10            munsell_0.5.0         
+## [49] fansi_1.0.4            lifecycle_1.0.3        stringi_1.7.12        
+## [52] yaml_2.3.7             zlibbioc_1.44.0        BiocFileCache_2.6.1   
+## [55] grid_4.2.2             blob_1.2.3             parallel_4.2.2        
+## [58] crayon_1.5.2           Biostrings_2.66.0      haven_2.5.1           
+## [61] hms_1.1.2              KEGGREST_1.38.0        knitr_1.42            
+## [64] pillar_1.8.1           reprex_2.0.2           XML_3.99-0.16.1       
+## [67] glue_1.6.2             evaluate_0.20          modelr_0.1.10         
+## [70] vctrs_0.5.2            png_0.1-8              tzdb_0.3.0            
+## [73] cellranger_1.1.0       gtable_0.3.1           assertthat_0.2.1      
+## [76] cachem_1.0.6           xfun_0.42              broom_1.0.3           
+## [79] googledrive_2.0.0      gargle_1.3.0           AnnotationDbi_1.60.2  
+## [82] memoise_2.0.1          timechange_0.2.0       ellipsis_0.3.2
diff --git a/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.Rmd b/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.Rmd index b0e84a8b..fc37e557 100644 --- a/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.Rmd +++ b/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.Rmd @@ -70,8 +70,13 @@ braf_fusions_dgd <- read_tsv(fusion_dgd_file) %>% dplyr::select(Kids_First_Biospecimen_ID, FusionName, `5_prime_region`, `3_prime_region`) %>% dplyr::mutate(`5_prime_region` = gsub("^Exon |^exon ", "", `5_prime_region`), `3_prime_region` = gsub("^Exon |^exon ", "", `3_prime_region`), - breakpoint_exons = paste(`5_prime_region`, `3_prime_region`, sep = ":"), - breakpoint_type = case_when(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") ~ "common", + breakpoint_exons = paste(`5_prime_region`, `3_prime_region`, sep = ":")) %>% + # re-format exon numbers to match those in pbta fusion file + dplyr::mutate(breakpoint_exons = str_replace( + str_replace(breakpoint_exons, + ":8", ":08"), + ":9", ":09"), + breakpoint_type = case_when(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") ~ "common", TRUE ~ "rare/novel"), keep = "yes") %>% left_join(hist[,c("Kids_First_Participant_ID", "Kids_First_Biospecimen_ID")]) @@ -82,13 +87,13 @@ Consolidate all common and rare exon breakpoints per patient ```{r} common_fusions_pbta <- braf_fusions %>% - dplyr::filter(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>% + dplyr::filter(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>% distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>% group_by(Kids_First_Participant_ID) %>% summarise(breakpoint_exons_common = str_c(breakpoint_exons, collapse = ";")) common_fusions <- braf_fusions_dgd %>% - dplyr::filter(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>% + dplyr::filter(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>% distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>% group_by(Kids_First_Participant_ID) %>% summarise(breakpoint_exons_common = str_c(breakpoint_exons, collapse = ";")) %>% @@ -98,13 +103,13 @@ common_fusions <- braf_fusions_dgd %>% summarise(breakpoint_exons_common = str_c(breakpoint_exons_common, collapse = ";")) rare_novel_fusions_pbta <- braf_fusions %>% - dplyr::filter(!breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>% + dplyr::filter(!breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>% distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>% group_by(Kids_First_Participant_ID) %>% summarise(breakpoint_exons_rare = str_c(breakpoint_exons, collapse = ";")) rare_novel_fusions <- braf_fusions_dgd %>% - dplyr::filter(!breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>% + dplyr::filter(!breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>% distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>% group_by(Kids_First_Participant_ID) %>% summarise(breakpoint_exons_rare = str_c(breakpoint_exons, collapse = ";")) %>% @@ -124,8 +129,8 @@ fusions_all <- common_fusions %>% # Assign breakpoint group (unique common breakpoint or broad rare group) dplyr::mutate(breakpoint_group = case_when( !is.na(breakpoint_exons_common) & !is.na(breakpoint_exons_rare) ~ NA_character_, - breakpoint_exons_common == "16:9" ~ "16:9", - breakpoint_exons_common == "15:9" ~ "15:9", + breakpoint_exons_common == "16:09" ~ "16:09", + breakpoint_exons_common == "15:09" ~ "15:09", breakpoint_exons_common == "16:11" ~ "16:11", breakpoint_exons_common == "18:10" ~ "18:10", !is.na(breakpoint_exons_rare) ~ "rare", @@ -143,7 +148,7 @@ scores <- hist %>% filter(dkfz_v12_methylation_subclass_score >= 0.8, # grab only PA subtypes grepl("PA_", dkfz_v12_methylation_subclass)) %>% - select("match_id", "dkfz_v12_methylation_subclass") %>% + dplyr::select("match_id", "dkfz_v12_methylation_subclass") %>% group_by(match_id) %>% summarise(dkfz_v12_methylation_subclass = str_c(unique(dkfz_v12_methylation_subclass), collapse = ";")) %>% unique() @@ -182,7 +187,7 @@ table(braf_hist$breakpoint_exons_common, braf_hist$predicted_ancestry) Calculate fusion breakpoint frequency by predicted ancestry and Fisher's exact test p-value ```{r} -common_breakpoints <- c("16:9", "15:9", "16:11", "18:10") +common_breakpoints <- c("16:09", "15:09", "16:11", "18:10") common_df <- braf_hist %>% dplyr::filter(breakpoint_exons_common %in% common_breakpoints) %>% @@ -208,16 +213,10 @@ write_tsv(common_df, Calculate breakpoint group odds ratios and p-values across predicted ancestries, and plot ```{r} -braf_hist <- braf_hist %>% - dplyr::mutate(AS_ancestry = case_when( - predicted_ancestry %in% c("EAS", "SAS") ~ "AS", - TRUE ~ predicted_ancestry - )) - group_ht <- plot_enr(braf_hist, - "breakpoint_group", "AS_ancestry", - var2_names = c("AFR", "AMR", "AS", "EUR"), - var1_names = c("15:9", "16:9", "16:11", "18:10", "rare")) + "breakpoint_group", "predicted_ancestry", + var2_names = c("AFR", "AMR", "EAS", "EUR", "SAS"), + var1_names = c("15:09", "16:09", "16:11", "18:10", "rare")) # plot enrichment results pdf(file.path(plot_dir, "breakpoint_group_ancestry_ct_enr_heatmap.pdf"), @@ -294,7 +293,7 @@ Plot methyl subtype by breakpoint group methyl_ht <- plot_enr(braf_hist[!is.na(braf_hist$dkfz_v12_methylation_subclass),], "breakpoint_group", "dkfz_v12_methylation_subclass", - var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"), + var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"), var2_names = sort(unique(braf_hist$dkfz_v12_methylation_subclass))) # plot enrichment results @@ -336,7 +335,7 @@ braf_hist <- braf_hist %>% resection_ht <- plot_enr(braf_hist[!grepl("Not Reported", braf_hist$resection),], "breakpoint_group", "resection", - var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"), + var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"), var2_names = c("Gross/Near total", "Partial", "Biopsy only")) # plot enrichment results @@ -373,7 +372,7 @@ Plot CNS region by breakpoint group region_ht <- plot_enr(braf_hist[braf_hist$CNS_region != "Mixed",], "breakpoint_group", "CNS_region", - var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"), + var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"), var2_names = sort(unique(braf_hist$CNS_region[braf_hist$CNS_region != "Mixed"]))) # plot enrichment results diff --git a/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.html b/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.html index e9ea12e5..a5d1e083 100644 --- a/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.html +++ b/analyses/braf-fusions/02-fusion-breakpoints-by-ancestry.html @@ -434,31 +434,18 @@

2024

Load libraries and set directories

library(data.table)
 library(tidyverse)
-
## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
-## ✔ dplyr     1.1.2     ✔ readr     2.1.4
-## ✔ forcats   1.0.0     ✔ stringr   1.5.0
-## ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-## ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-## ✔ purrr     1.0.1     
-## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
-## ✖ dplyr::between()     masks data.table::between()
-## ✖ dplyr::filter()      masks stats::filter()
-## ✖ dplyr::first()       masks data.table::first()
-## ✖ lubridate::hour()    masks data.table::hour()
-## ✖ lubridate::isoweek() masks data.table::isoweek()
-## ✖ dplyr::lag()         masks stats::lag()
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-## ✖ lubridate::month()   masks data.table::month()
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-## ✖ purrr::transpose()   masks data.table::transpose()
-## ✖ lubridate::wday()    masks data.table::wday()
-## ✖ lubridate::week()    masks data.table::week()
-## ✖ lubridate::yday()    masks data.table::yday()
-## ✖ lubridate::year()    masks data.table::year()
-## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
+
## ── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
+## ✔ ggplot2 3.4.0     ✔ purrr   1.0.1
+## ✔ tibble  3.1.8     ✔ dplyr   1.1.0
+## ✔ tidyr   1.3.0     ✔ stringr 1.5.0
+## ✔ readr   2.1.3     ✔ forcats 1.0.0
+## ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
+## ✖ dplyr::between()   masks data.table::between()
+## ✖ dplyr::filter()    masks stats::filter()
+## ✖ dplyr::first()     masks data.table::first()
+## ✖ dplyr::lag()       masks stats::lag()
+## ✖ dplyr::last()      masks data.table::last()
+## ✖ purrr::transpose() masks data.table::transpose()
library(ComplexHeatmap)
## Loading required package: grid
 ## ========================================
@@ -514,8 +501,8 @@ 
2024

 
braf_hist <- read_tsv(cohort_hist_file) %>%
   dplyr::filter(plot_group == "Low-grade glioma" & (grepl("-BRAF|wildtype|classified", molecular_subtype) | is.na(molecular_subtype))) %>%
   dplyr::mutate(predicted_ancestry = factor(predicted_ancestry))

-
## Rows: 1485 Columns: 41
-## ── Column specification ────────────────────────────────────────────────────────
+
## Rows: 1484 Columns: 41
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
 ## chr (22): Kids_First_Biospecimen_ID, predicted_ancestry, Kids_First_Particip...
 ## dbl (18): EAS_prob, AFR_prob, AMR_prob, SAS_prob, EUR_prob, PC1, PC2, PC3, P...
@@ -525,7 +512,7 @@ 
2024

 ## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

 
hist <- read_tsv(hist_file)

 
## Rows: 47633 Columns: 58
-## ── Column specification ────────────────────────────────────────────────────────
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
 ## chr (41): Kids_First_Participant_ID, Kids_First_Biospecimen_ID, sample_id, a...
 ## dbl (17): cell_line_passage, OS_days, EFS_days, age_at_diagnosis_days, age_a...
@@ -542,12 +529,11 @@ 
2024

   # The below samples have two different common breakpoints and one is low conf in arriba, so we will remove that one
   mutate(keep = case_when(Sample %in% c("BS_SDZY6RZ3", "BS_063ERW0R") & LeftBreakpoint_position == 138867975 ~ "no",
                             TRUE ~ keep))

-
## Warning: One or more parsing issues, call `problems()` on your data frame for details,
-## e.g.:
+
## Warning: One or more parsing issues, call `problems()` on your data frame for details, e.g.:
 ##   dat <- vroom(...)
 ##   problems(dat)

 
## Rows: 260 Columns: 31
-## ── Column specification ────────────────────────────────────────────────────────
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
 ## chr  (18): Sample, FusionName, DomainRetainedGene1A, DomainRetainedGene1B, G...
 ## dbl   (6): caller.count, Chromosome, LeftBreakpoint_position, RightBreakpoin...
@@ -562,13 +548,18 @@ 
2024

   dplyr::select(Kids_First_Biospecimen_ID, FusionName, `5_prime_region`, `3_prime_region`) %>%
   dplyr::mutate(`5_prime_region` = gsub("^Exon |^exon ", "", `5_prime_region`),
          `3_prime_region` = gsub("^Exon |^exon ", "", `3_prime_region`),                        
-         breakpoint_exons = paste(`5_prime_region`, `3_prime_region`, sep = ":"),
-         breakpoint_type = case_when(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") ~ "common",
+         breakpoint_exons = paste(`5_prime_region`, `3_prime_region`, sep = ":")) %>%
+    # re-format exon numbers to match those in pbta fusion file
+  dplyr::mutate(breakpoint_exons = str_replace(
+                                              str_replace(breakpoint_exons,
+                                               ":8", ":08"),
+                                              ":9", ":09"),
+         breakpoint_type = case_when(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") ~ "common",
                                      TRUE ~ "rare/novel"),
          keep = "yes") %>%
   left_join(hist[,c("Kids_First_Participant_ID", "Kids_First_Biospecimen_ID")])

 
## Rows: 533 Columns: 22
-## ── Column specification ────────────────────────────────────────────────────────
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
 ## chr (14): Sample, FusionName, Fusion_Type, Gene1A, Gene1B, 5_prime_transcrip...
 ## dbl  (2): JunctionReadCount, SpanningFragCount
@@ -579,13 +570,13 @@ 
2024

 ## Joining with `by = join_by(Kids_First_Biospecimen_ID)`

 
Consolidate all common and rare exon breakpoints per patient

 
common_fusions_pbta <- braf_fusions %>%
-  dplyr::filter(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>%
+  dplyr::filter(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>%
   distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>%
   group_by(Kids_First_Participant_ID) %>%
   summarise(breakpoint_exons_common = str_c(breakpoint_exons, collapse = ";"))
 
 common_fusions <- braf_fusions_dgd %>%
-  dplyr::filter(breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>%
+  dplyr::filter(breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>%
   distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>%
   group_by(Kids_First_Participant_ID) %>%
   summarise(breakpoint_exons_common = str_c(breakpoint_exons, collapse = ";")) %>%
@@ -595,13 +586,13 @@ 
2024

   summarise(breakpoint_exons_common = str_c(breakpoint_exons_common, collapse = ";"))
 
 rare_novel_fusions_pbta <- braf_fusions %>%
-  dplyr::filter(!breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>%
+  dplyr::filter(!breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>%
   distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>%
   group_by(Kids_First_Participant_ID) %>%
   summarise(breakpoint_exons_rare = str_c(breakpoint_exons, collapse = ";"))
 
 rare_novel_fusions <- braf_fusions_dgd %>%
-  dplyr::filter(!breakpoint_exons %in% c("16:9", "15:9", "16:11", "18:10") & keep == "yes") %>%
+  dplyr::filter(!breakpoint_exons %in% c("16:09", "15:09", "16:11", "18:10") & keep == "yes") %>%
   distinct(Kids_First_Participant_ID, breakpoint_exons, .keep_all = T) %>%
   group_by(Kids_First_Participant_ID) %>%
   summarise(breakpoint_exons_rare = str_c(breakpoint_exons, collapse = ";")) %>%
@@ -621,8 +612,8 @@ 
2024

   # Assign breakpoint group (unique common breakpoint or broad rare group)
   dplyr::mutate(breakpoint_group = case_when(
     !is.na(breakpoint_exons_common) & !is.na(breakpoint_exons_rare) ~ NA_character_,
-    breakpoint_exons_common == "16:9" ~ "16:9",
-    breakpoint_exons_common == "15:9" ~ "15:9",
+    breakpoint_exons_common == "16:09" ~ "16:09",
+    breakpoint_exons_common == "15:09" ~ "15:09",
     breakpoint_exons_common == "16:11" ~ "16:11",
     breakpoint_exons_common == "18:10" ~ "18:10",
     !is.na(breakpoint_exons_rare) ~ "rare",
@@ -635,7 +626,7 @@ 
2024

   filter(dkfz_v12_methylation_subclass_score >= 0.8,
          # grab only PA subtypes
          grepl("PA_", dkfz_v12_methylation_subclass)) %>%
-  select("match_id", "dkfz_v12_methylation_subclass") %>%
+  dplyr::select("match_id", "dkfz_v12_methylation_subclass") %>%
   group_by(match_id) %>%
   summarise(dkfz_v12_methylation_subclass = str_c(unique(dkfz_v12_methylation_subclass), collapse = ";")) %>%
   unique()
@@ -667,13 +658,13 @@ 
Common breakpoint summary

 
table(braf_hist$breakpoint_exons_common, braf_hist$predicted_ancestry)

 
##        
 ##         AFR AMR EAS EUR SAS
-##   15:9    4   3   2  19   3
+##   15:09   4   3   2  19   3
+##   16:09  15  14   1  73   1
 ##   16:11   4   3   0  12   1
-##   16:9   15  14   1  73   1
 ##   18:10   0   1   0   5   0

 
Calculate fusion breakpoint frequency by predicted ancestry and
 Fisher’s exact test p-value

-
common_breakpoints <- c("16:9", "15:9", "16:11", "18:10")
+
common_breakpoints <- c("16:09", "15:09", "16:11", "18:10")
 
 common_df <- braf_hist %>%
   dplyr::filter(breakpoint_exons_common %in% common_breakpoints) %>%
@@ -696,16 +687,10 @@ 
Common breakpoint summary

           file.path(results_dir, "lgg-braf-fusion-common-breakpoint-freq.tsv"))

 
Calculate breakpoint group odds ratios and p-values across predicted
 ancestries, and plot

-
braf_hist <- braf_hist %>%
-  dplyr::mutate(AS_ancestry = case_when(
-    predicted_ancestry %in% c("EAS", "SAS") ~ "AS",
-    TRUE ~ predicted_ancestry
-  ))
-
-group_ht <- plot_enr(braf_hist, 
-                     "breakpoint_group", "AS_ancestry",
-                     var2_names = c("AFR", "AMR", "AS", "EUR"),
-                     var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"))
+
group_ht <- plot_enr(braf_hist, 
+                     "breakpoint_group", "predicted_ancestry",
+                     var2_names = c("AFR", "AMR", "EAS", "EUR", "SAS"),
+                     var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"))
 
 # plot enrichment results
 pdf(file.path(plot_dir, "breakpoint_group_ancestry_ct_enr_heatmap.pdf"),
@@ -716,18 +701,18 @@ 
Common breakpoint summary

 invisible(dev.off())
 
 draw(group_ht)

-

+

 
Print rare/novel fusion breakpoint count by predicted ancestry

 
table(braf_hist$breakpoint_exons_rare, braf_hist$predicted_ancestry)

 
##        
 ##         AFR AMR EAS EUR SAS
-##   10:9    0   0   0   1   0
+##   10:09   0   0   0   1   0
+##   13:09   0   2   0   0   0
 ##   13:11   0   0   0   1   0
-##   13:9    0   2   0   0   0
-##   14:8    1   0   0   0   0
+##   14:08   1   0   0   0   0
 ##   15:11   0   0   0   4   0
 ##   16:10   0   0   0   1   0
-##   19:9    0   1   0   0   0

+##   19:09   0   1   0   0   0

 
Create heatmap of rare breakpoints by ancestry

 
pdf(file.path(plot_dir, "rare_breakpoints_by_ancestry.pdf"),
     height = 3, width = 4)
@@ -752,7 +737,7 @@ 
Common breakpoint summary

 invisible(dev.off())
 
 rare_ht

-

+

 
Print ancestry by methyl subtype

 
table(braf_hist$dkfz_v12_methylation_subclass, braf_hist$predicted_ancestry)

 
##              
@@ -773,15 +758,15 @@ 
Common breakpoint summary

 ##  2000 replicates)
 ## 
 ## data:  table(braf_hist$breakpoint_type, braf_hist$dkfz_v12_methylation_subclass)
-## p-value = 0.008996
+## p-value = 0.006997
 ## alternative hypothesis: two.sided

 
Print breakpoint by methyl subtype

 
table(braf_hist$breakpoint_group, braf_hist$dkfz_v12_methylation_subclass)

 
##        
 ##         PA_CORT PA_INF PA_INF_FGFR PA_MID
-##   15:9        1      6           0      7
+##   15:09       1      6           0      7
+##   16:09       0     45           1      3
 ##   16:11       0      6           0      0
-##   16:9        0     45           1      3
 ##   18:10       0      4           0      0
 ##   rare        0      0           0      3

 
fisher.test(table(braf_hist$breakpoint_group, braf_hist$dkfz_v12_methylation_subclass), simulate.p.value = T)

@@ -795,7 +780,7 @@ 
Common breakpoint summary

 
Plot methyl subtype by breakpoint group

 
methyl_ht <- plot_enr(braf_hist[!is.na(braf_hist$dkfz_v12_methylation_subclass),], 
                      "breakpoint_group", "dkfz_v12_methylation_subclass",
-                     var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"),
+                     var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"),
                      var2_names = sort(unique(braf_hist$dkfz_v12_methylation_subclass)))
 
 # plot enrichment results
@@ -807,7 +792,7 @@ 
Common breakpoint summary

 invisible(dev.off())
 
 draw(methyl_ht)

-

+

 
Assess distribution of resection level in patients by breakpoint type
 (common vs. rare)

 
round(table(braf_hist$breakpoint_type, braf_hist$extent_of_tumor_resection)/as.vector(table(braf_hist$breakpoint_type)), 2)

@@ -827,9 +812,9 @@ 
Common breakpoint summary

 
round(table(braf_hist$breakpoint_group, braf_hist$extent_of_tumor_resection)/as.vector(table(braf_hist$breakpoint_group)), 2)

 
##        
 ##         Biopsy only Gross/Near total resection Not Reported Partial resection
-##   15:9         0.06                       0.52         0.00              0.42
+##   15:09        0.06                       0.52         0.00              0.42
+##   16:09        0.00                       0.75         0.01              0.24
 ##   16:11        0.20                       0.65         0.00              0.15
-##   16:9         0.00                       0.75         0.01              0.24
 ##   18:10        0.00                       0.67         0.00              0.33
 ##   rare         0.09                       0.18         0.00              0.73

 
fisher.test(table(braf_hist$breakpoint_group, braf_hist$extent_of_tumor_resection), simulate.p.value = T)

@@ -846,7 +831,7 @@ 
Common breakpoint summary

 
 resection_ht <- plot_enr(braf_hist[!grepl("Not Reported", braf_hist$resection),], 
                      "breakpoint_group", "resection",
-                     var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"),
+                     var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"),
                      var2_names = c("Gross/Near total", "Partial", "Biopsy only"))
 
 # plot enrichment results
@@ -858,7 +843,7 @@ 
Common breakpoint summary

 invisible(dev.off())
 
 draw(resection_ht)

-

+

 
Assess distribution of tumor CNS region in patients by breakpoint
 type and group

 
round(table(braf_hist$breakpoint_type, braf_hist$CNS_region)/as.vector(table(braf_hist$breakpoint_type)), 3) * 100

@@ -881,16 +866,16 @@ 
Common breakpoint summary

 
round(table(braf_hist$breakpoint_group, braf_hist$CNS_region)/as.vector(table(braf_hist$breakpoint_group)), 3) * 100

 
##        
 ##         Hemispheric Midline Mixed Optic pathway Posterior fossa Spine
-##   15:9          3.2     3.2  19.4           0.0            45.2  12.9
+##   15:09         3.2     3.2  19.4           0.0            45.2  12.9
+##   16:09         2.9     7.7   2.9           1.0            80.8   0.0
 ##   16:11         0.0     0.0  20.0           5.0            70.0   0.0
-##   16:9          2.9     7.7   2.9           1.0            80.8   0.0
 ##   18:10         0.0     0.0  16.7           0.0            66.7   0.0
 ##   rare          9.1     0.0  18.2          18.2             9.1   0.0
 ##        
 ##         Suprasellar Ventricles
-##   15:9         12.9        3.2
+##   15:09        12.9        3.2
+##   16:09         1.9        2.9
 ##   16:11         0.0        5.0
-##   16:9          1.9        2.9
 ##   18:10        16.7        0.0
 ##   rare         36.4        9.1

 
fisher.test(table(braf_hist$breakpoint_group, braf_hist$CNS_region), simulate.p.value = T)

@@ -904,7 +889,7 @@ 
Common breakpoint summary

 
Plot CNS region by breakpoint group

 
region_ht <- plot_enr(braf_hist[braf_hist$CNS_region != "Mixed",], 
                      "breakpoint_group", "CNS_region",
-                     var1_names = c("15:9", "16:9", "16:11", "18:10", "rare"),
+                     var1_names = c("15:09", "16:09", "16:11", "18:10", "rare"),
                      var2_names = sort(unique(braf_hist$CNS_region[braf_hist$CNS_region != "Mixed"])))
 
 # plot enrichment results
@@ -916,7 +901,7 @@ 
Common breakpoint summary

 invisible(dev.off())
 
 draw(region_ht)

-

+

 
Confirm that CNS region and degree of tumor resection are
 significantly associated:

 
round(table(braf_hist$CNS_region, braf_hist$extent_of_tumor_resection)/as.vector(table(braf_hist$CNS_region)), 3) * 100

@@ -955,49 +940,60 @@ 
Common breakpoint summary

 
Print session info

 
sessionInfo()

 
## R version 4.2.2 (2022-10-31)
-## Platform: x86_64-apple-darwin17.0 (64-bit)
-## Running under: macOS Big Sur ... 10.16
+## Platform: x86_64-pc-linux-gnu (64-bit)
+## Running under: Ubuntu 22.04.1 LTS
 ## 
 ## Matrix products: default
-## BLAS:   /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRblas.0.dylib
-## LAPACK: /Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libRlapack.dylib
+## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
+## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so
 ## 
 ## locale:
-## [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
+##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
+##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
+##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
+##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
+##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
+## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
 ## 
 ## attached base packages:
 ## [1] grid      stats     graphics  grDevices utils     datasets  methods  
 ## [8] base     
 ## 
 ## other attached packages:
-##  [1] circlize_0.4.15       ComplexHeatmap_2.14.0 lubridate_1.9.2      
-##  [4] forcats_1.0.0         stringr_1.5.0         dplyr_1.1.2          
-##  [7] purrr_1.0.1           readr_2.1.4           tidyr_1.3.0          
-## [10] tibble_3.2.1          ggplot2_3.4.2         tidyverse_2.0.0      
-## [13] data.table_1.14.8    
+##  [1] circlize_0.4.15       ComplexHeatmap_2.14.0 forcats_1.0.0        
+##  [4] stringr_1.5.0         dplyr_1.1.0           purrr_1.0.1          
+##  [7] readr_2.1.3           tidyr_1.3.0           tibble_3.1.8         
+## [10] ggplot2_3.4.0         tidyverse_1.3.2       data.table_1.15.0    
 ## 
 ## loaded via a namespace (and not attached):
-##  [1] png_0.1-8           rprojroot_2.0.3     digest_0.6.31      
-##  [4] foreach_1.5.2       utf8_1.2.3          R6_2.5.1           
-##  [7] stats4_4.2.2        evaluate_0.20       highr_0.10         
-## [10] pillar_1.9.0        GlobalOptions_0.1.2 rlang_1.1.0        
-## [13] rstudioapi_0.14     jquerylib_0.1.4     S4Vectors_0.36.2   
-## [16] GetoptLong_1.0.5    rmarkdown_2.21      bit_4.0.5          
-## [19] munsell_0.5.0       compiler_4.2.2      xfun_0.38          
-## [22] pkgconfig_2.0.3     BiocGenerics_0.44.0 shape_1.4.6        
-## [25] htmltools_0.5.5     tidyselect_1.2.0    IRanges_2.32.0     
-## [28] codetools_0.2-19    matrixStats_0.63.0  fansi_1.0.4        
-## [31] crayon_1.5.2        tzdb_0.3.0          withr_2.5.0        
-## [34] jsonlite_1.8.4      gtable_0.3.3        lifecycle_1.0.3    
-## [37] magrittr_2.0.3      scales_1.2.1        cli_3.6.1          
-## [40] stringi_1.7.12      vroom_1.6.1         cachem_1.0.7       
-## [43] doParallel_1.0.17   bslib_0.4.2         generics_0.1.3     
-## [46] vctrs_0.6.1         rjson_0.2.21        RColorBrewer_1.1-3 
-## [49] iterators_1.0.14    tools_4.2.2         bit64_4.0.5        
-## [52] glue_1.6.2          hms_1.1.3           parallel_4.2.2     
-## [55] fastmap_1.1.1       yaml_2.3.7          timechange_0.2.0   
-## [58] clue_0.3-64         colorspace_2.1-1    cluster_2.1.4      
-## [61] knitr_1.42          sass_0.4.5

+##  [1] matrixStats_1.2.0   fs_1.6.0            lubridate_1.9.1    
+##  [4] bit64_4.0.5         doParallel_1.0.17   RColorBrewer_1.1-3 
+##  [7] httr_1.4.4          rprojroot_2.0.3     tools_4.2.2        
+## [10] backports_1.4.1     bslib_0.4.2         utf8_1.2.3         
+## [13] R6_2.5.1            DBI_1.1.3           BiocGenerics_0.44.0
+## [16] colorspace_2.1-0    GetoptLong_1.0.5    withr_2.5.0        
+## [19] tidyselect_1.2.0    bit_4.0.5           compiler_4.2.2     
+## [22] cli_3.6.0           rvest_1.0.3         xml2_1.3.3         
+## [25] sass_0.4.5          scales_1.2.1        digest_0.6.31      
+## [28] rmarkdown_2.20      pkgconfig_2.0.3     htmltools_0.5.4    
+## [31] highr_0.10          dbplyr_2.3.0        fastmap_1.1.0      
+## [34] rlang_1.0.6         GlobalOptions_0.1.2 readxl_1.4.1       
+## [37] shape_1.4.6         jquerylib_0.1.4     generics_0.1.3     
+## [40] jsonlite_1.8.4      vroom_1.6.1         googlesheets4_1.0.1
+## [43] magrittr_2.0.3      Rcpp_1.0.10         munsell_0.5.0      
+## [46] S4Vectors_0.36.2    fansi_1.0.4         lifecycle_1.0.3    
+## [49] stringi_1.7.12      yaml_2.3.7          parallel_4.2.2     
+## [52] crayon_1.5.2        haven_2.5.1         hms_1.1.2          
+## [55] magick_2.8.2        knitr_1.42          pillar_1.8.1       
+## [58] rjson_0.2.21        codetools_0.2-18    stats4_4.2.2       
+## [61] reprex_2.0.2        glue_1.6.2          evaluate_0.20      
+## [64] modelr_0.1.10       png_0.1-8           vctrs_0.5.2        
+## [67] tzdb_0.3.0          foreach_1.5.2       cellranger_1.1.0   
+## [70] gtable_0.3.1        clue_0.3-65         assertthat_0.2.1   
+## [73] cachem_1.0.6        xfun_0.42           broom_1.0.3        
+## [76] googledrive_2.0.0   gargle_1.3.0        iterators_1.0.14   
+## [79] IRanges_2.32.0      cluster_2.1.4       timechange_0.2.0   
+## [82] ellipsis_0.3.2

 
 
 
diff --git a/analyses/braf-fusions/plots/breakpoint_group_ancestry_ct_enr_heatmap.pdf b/analyses/braf-fusions/plots/breakpoint_group_ancestry_ct_enr_heatmap.pdf
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diff --git a/analyses/braf-fusions/plots/breakpoint_group_region_ct_enr_heatmap.pdf b/analyses/braf-fusions/plots/breakpoint_group_region_ct_enr_heatmap.pdf
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E0kb_0umAu6

diff --git a/analyses/braf-fusions/results/braf-fusion-breakpoints-by-patient.tsv b/analyses/braf-fusions/results/braf-fusion-breakpoints-by-patient.tsv
index 860b14ee..0b9d2f62 100644
--- a/analyses/braf-fusions/results/braf-fusion-breakpoints-by-patient.tsv
+++ b/analyses/braf-fusions/results/braf-fusion-breakpoints-by-patient.tsv
@@ -1,271 +1,271 @@
 Kids_First_Participant_ID	breakpoint_exons_common	breakpoint_exons_rare	breakpoint_type	breakpoint_group
 PT_047YGDRW	16:11	NA	common	16:11
-PT_08M919BH	15:9	NA	common	15:9
-PT_0D0YGGBW	16:9	NA	common	16:9
-PT_0EWY6S6S	15:9	NA	common	15:9
-PT_0H8VY9HP	16:9	NA	common	16:9
-PT_0K0DPVF6	16:9	NA	common	16:9
-PT_0QMF19PR	16:9	NA	common	16:9
-PT_11DZQ3HH	16:9	NA	common	16:9
-PT_12JTZFC2	16:9	NA	common	16:9
-PT_1352J18C	15:9	NA	common	15:9
-PT_18JCZJ25	15:9	NA	common	15:9
-PT_1BV6ND1D	16:9	NA	common	16:9
-PT_1J2DT6MM	16:9	NA	common	16:9
-PT_1KEER2Q1	16:9	NA	common	16:9
-PT_1RYJXGCY	16:9	NA	common	16:9
-PT_27FDWCVZ	16:9	NA	common	16:9
-PT_2FVTD0WR	15:9	NA	common	15:9
-PT_2GTHCPXB	16:9	NA	common	16:9
+PT_08M919BH	15:09	NA	common	15:09
+PT_0D0YGGBW	16:09	NA	common	16:09
+PT_0EWY6S6S	15:09	NA	common	15:09
+PT_0H8VY9HP	16:09	NA	common	16:09
+PT_0K0DPVF6	16:09	NA	common	16:09
+PT_0QMF19PR	16:09	NA	common	16:09
+PT_11DZQ3HH	16:09	NA	common	16:09
+PT_12JTZFC2	16:09	NA	common	16:09
+PT_1352J18C	15:09	NA	common	15:09
+PT_18JCZJ25	15:09	NA	common	15:09
+PT_1BV6ND1D	16:09	NA	common	16:09
+PT_1J2DT6MM	16:09	NA	common	16:09
+PT_1KEER2Q1	16:09	NA	common	16:09
+PT_1RYJXGCY	16:09	NA	common	16:09
+PT_27FDWCVZ	16:09	NA	common	16:09
+PT_2FVTD0WR	15:09	NA	common	15:09
+PT_2GTHCPXB	16:09	NA	common	16:09
 PT_2HWA1TA9	16:11	NA	common	16:11
-PT_2V5GJG0F	16:9	NA	common	16:9
-PT_2VSDT9CK	15:9	NA	common	15:9
-PT_2VYJXHHQ	16:9	NA	common	16:9
-PT_2Z7GVDTM	16:9	NA	common	16:9
+PT_2V5GJG0F	16:09	NA	common	16:09
+PT_2VSDT9CK	15:09	NA	common	15:09
+PT_2VYJXHHQ	16:09	NA	common	16:09
+PT_2Z7GVDTM	16:09	NA	common	16:09
 PT_3CVMBGD7	16:11	NA	common	16:11
-PT_3HRS5CWF	16:9	NA	common	16:9
-PT_3J0ASVHN	16:9	NA	common	16:9
-PT_3RN24N9X	16:9	NA	common	16:9
-PT_3V5GTCJR	16:9	NA	common	16:9
-PT_409Y4N1N	15:9	NA	common	15:9
-PT_49KEX2FK	16:9	NA	common	16:9
+PT_3HRS5CWF	16:09	NA	common	16:09
+PT_3J0ASVHN	16:09	NA	common	16:09
+PT_3RN24N9X	16:09	NA	common	16:09
+PT_3V5GTCJR	16:09	NA	common	16:09
+PT_409Y4N1N	15:09	NA	common	15:09
+PT_49KEX2FK	16:09	NA	common	16:09
 PT_4E3H4SBP	16:11	NA	common	16:11
-PT_4EDBZRM2	16:9	NA	common	16:9
-PT_4TASAQKA	16:9	NA	common	16:9
-PT_4TFTQXJ8	15:9	NA	common	15:9
-PT_4Z34K4XB	15:9	NA	common	15:9
-PT_50ZFWMZE	16:9	NA	common	16:9
-PT_54NFS78W	15:9	NA	common	15:9
-PT_56SWR1FM	16:9	NA	common	16:9
-PT_5ABCFCSK	16:9	NA	common	16:9
-PT_5CNZ47XV	16:9	NA	common	16:9
-PT_5GQ76YZJ	16:9	NA	common	16:9
-PT_5M8A47WW	16:9	NA	common	16:9
-PT_5P3XJ97K	16:9	NA	common	16:9
+PT_4EDBZRM2	16:09	NA	common	16:09
+PT_4TASAQKA	16:09	NA	common	16:09
+PT_4TFTQXJ8	15:09	NA	common	15:09
+PT_4Z34K4XB	15:09	NA	common	15:09
+PT_50ZFWMZE	16:09	NA	common	16:09
+PT_54NFS78W	15:09	NA	common	15:09
+PT_56SWR1FM	16:09	NA	common	16:09
+PT_5ABCFCSK	16:09	NA	common	16:09
+PT_5CNZ47XV	16:09	NA	common	16:09
+PT_5GQ76YZJ	16:09	NA	common	16:09
+PT_5M8A47WW	16:09	NA	common	16:09
+PT_5P3XJ97K	16:09	NA	common	16:09
 PT_5VAKED5F	16:11	NA	common	16:11
-PT_5VMBPWYG	16:9	NA	common	16:9
+PT_5VMBPWYG	16:09	NA	common	16:09
 PT_5XV23PWB	16:11	NA	common	16:11
-PT_5YK63VX9	16:9	NA	common	16:9
-PT_62G82T6Q	16:9	NA	common	16:9
-PT_64JHC2BH	15:9	NA	common	15:9
-PT_67JEDH01	15:9	NA	common	15:9
-PT_6E8JYRXM	15:9	NA	common	15:9
-PT_6MWPJ96F	16:9	NA	common	16:9
+PT_5YK63VX9	16:09	NA	common	16:09
+PT_62G82T6Q	16:09	NA	common	16:09
+PT_64JHC2BH	15:09	NA	common	15:09
+PT_67JEDH01	15:09	NA	common	15:09
+PT_6E8JYRXM	15:09	NA	common	15:09
+PT_6MWPJ96F	16:09	NA	common	16:09
 PT_6N1QWCXE	16:11	NA	common	16:11
 PT_6R95FQT2	18:10	NA	common	18:10
-PT_6VJ5PNKS	16:9	NA	common	16:9
-PT_6VKN63HK	16:9	NA	common	16:9
+PT_6VJ5PNKS	16:09	NA	common	16:09
+PT_6VKN63HK	16:09	NA	common	16:09
 PT_773ZPTEB	16:11	NA	common	16:11
-PT_7JZ1W69S	15:9	NA	common	15:9
-PT_7TD59X9Q	15:9	NA	common	15:9
-PT_7TEHW6VQ	16:9	NA	common	16:9
-PT_7TVR7AJ2	16:9	NA	common	16:9
-PT_7VNN8JMM	15:9	NA	common	15:9
-PT_7YGZ526E	15:9	NA	common	15:9
-PT_8127P12D	15:9	NA	common	15:9
-PT_84WA83VT	15:9	NA	common	15:9
-PT_8J4EYY40	16:9	NA	common	16:9
-PT_8XZY6MM1	16:9	NA	common	16:9
-PT_962TCBVR	16:9	NA	common	16:9
+PT_7JZ1W69S	15:09	NA	common	15:09
+PT_7TD59X9Q	15:09	NA	common	15:09
+PT_7TEHW6VQ	16:09	NA	common	16:09
+PT_7TVR7AJ2	16:09	NA	common	16:09
+PT_7VNN8JMM	15:09	NA	common	15:09
+PT_7YGZ526E	15:09	NA	common	15:09
+PT_8127P12D	15:09	NA	common	15:09
+PT_84WA83VT	15:09	NA	common	15:09
+PT_8J4EYY40	16:09	NA	common	16:09
+PT_8XZY6MM1	16:09	NA	common	16:09
+PT_962TCBVR	16:09	NA	common	16:09
 PT_9B6KWJT2	16:11	NA	common	16:11
-PT_9C2G356W	16:9	NA	common	16:9
-PT_9DN55H64	15:9	NA	common	15:9
-PT_9JA20YPN	15:9	NA	common	15:9
-PT_9TPW6850	15:9	NA	common	15:9
-PT_A9F8Y6MA	15:9	NA	common	15:9
-PT_AC5SD9AC	16:9	NA	common	16:9
-PT_ADTP7EHN	16:9	NA	common	16:9
-PT_AH6VGDWV	15:9	NA	common	15:9
-PT_ATE3YRH5	16:9	NA	common	16:9
-PT_AX5NM47X	15:9	NA	common	15:9
-PT_AYV78KT9	16:9	NA	common	16:9
-PT_AYVKQZRB	16:9	NA	common	16:9
-PT_AZAJRK9Z	16:9	NA	common	16:9
+PT_9C2G356W	16:09	NA	common	16:09
+PT_9DN55H64	15:09	NA	common	15:09
+PT_9JA20YPN	15:09	NA	common	15:09
+PT_9TPW6850	15:09	NA	common	15:09
+PT_A9F8Y6MA	15:09	NA	common	15:09
+PT_AC5SD9AC	16:09	NA	common	16:09
+PT_ADTP7EHN	16:09	NA	common	16:09
+PT_AH6VGDWV	15:09	NA	common	15:09
+PT_ATE3YRH5	16:09	NA	common	16:09
+PT_AX5NM47X	15:09	NA	common	15:09
+PT_AYV78KT9	16:09	NA	common	16:09
+PT_AYVKQZRB	16:09	NA	common	16:09
+PT_AZAJRK9Z	16:09	NA	common	16:09
 PT_B5KXHZ6Q	16:11	NA	common	16:11
-PT_B5TJ8Q6D	16:9	NA	common	16:9
-PT_B5VQ16GW	15:9	NA	common	15:9
-PT_B8MQ72RJ	15:9	NA	common	15:9
-PT_BDNE55YT	15:9	NA	common	15:9
-PT_BDPH0Z9G	16:9	NA	common	16:9
-PT_BHPBJNCP	16:9	NA	common	16:9
-PT_BK92NM09	16:9	NA	common	16:9
-PT_BVA0H9T9	16:9	NA	common	16:9
+PT_B5TJ8Q6D	16:09	NA	common	16:09
+PT_B5VQ16GW	15:09	NA	common	15:09
+PT_B8MQ72RJ	15:09	NA	common	15:09
+PT_BDNE55YT	15:09	NA	common	15:09
+PT_BDPH0Z9G	16:09	NA	common	16:09
+PT_BHPBJNCP	16:09	NA	common	16:09
+PT_BK92NM09	16:09	NA	common	16:09
+PT_BVA0H9T9	16:09	NA	common	16:09
 PT_C1M4YF1R	18:10	NA	common	18:10
-PT_C95KPXSW	16:9	NA	common	16:9
-PT_CCZRN7A3	16:9	NA	common	16:9
-PT_CGPJY881	16:9	NA	common	16:9
-PT_CK41DW03	15:9	NA	common	15:9
-PT_CRWTNE04	15:9	NA	common	15:9
-PT_CXHQV5YC	16:9	NA	common	16:9
+PT_C95KPXSW	16:09	NA	common	16:09
+PT_CCZRN7A3	16:09	NA	common	16:09
+PT_CGPJY881	16:09	NA	common	16:09
+PT_CK41DW03	15:09	NA	common	15:09
+PT_CRWTNE04	15:09	NA	common	15:09
+PT_CXHQV5YC	16:09	NA	common	16:09
 PT_D9HXS4CK	16:11	NA	common	16:11
-PT_DDQCAZJG	16:9	NA	common	16:9
-PT_DEYCW197	16:9	NA	common	16:9
-PT_DMHFS0HX	16:9	NA	common	16:9
-PT_DW6V5V8E	15:9	NA	common	15:9
-PT_DZ86YXN6	16:9	NA	common	16:9
-PT_DZH5NZXG	15:9	NA	common	15:9
-PT_E1TRJP8V	16:9	NA	common	16:9
-PT_E78NHRWQ	16:9	NA	common	16:9
+PT_DDQCAZJG	16:09	NA	common	16:09
+PT_DEYCW197	16:09	NA	common	16:09
+PT_DMHFS0HX	16:09	NA	common	16:09
+PT_DW6V5V8E	15:09	NA	common	15:09
+PT_DZ86YXN6	16:09	NA	common	16:09
+PT_DZH5NZXG	15:09	NA	common	15:09
+PT_E1TRJP8V	16:09	NA	common	16:09
+PT_E78NHRWQ	16:09	NA	common	16:09
 PT_EF398HVC	18:10	NA	common	18:10
-PT_EGGE4SGY	16:9	NA	common	16:9
-PT_EHXD392P	16:9	NA	common	16:9
-PT_EQ0BRG88	16:9	NA	common	16:9
+PT_EGGE4SGY	16:09	NA	common	16:09
+PT_EHXD392P	16:09	NA	common	16:09
+PT_EQ0BRG88	16:09	NA	common	16:09
 PT_EQ5C5TEA	18:10	NA	common	18:10
-PT_ER1C7KPB	15:9	NA	common	15:9
-PT_EVF1DWCZ	15:9	NA	common	15:9
-PT_EW604JB3	15:9	NA	common	15:9
-PT_EXYXBDGP	16:9	NA	common	16:9
-PT_EZEMVRVT	16:9	NA	common	16:9
-PT_F27Y48H0	16:9	NA	common	16:9
-PT_FAD8FQ6S	15:9	NA	common	15:9
-PT_FC0EF5ZT	16:9	NA	common	16:9
-PT_FKWCVXNC	16:9	NA	common	16:9
-PT_GAKHC0Y2	16:9	NA	common	16:9
-PT_GCKT4FJX	16:9	NA	common	16:9
-PT_GKFQN9WV	15:9	NA	common	15:9
-PT_GKN1EAW9	16:9	NA	common	16:9
-PT_GMQ1TQAF	15:9	NA	common	15:9
-PT_GNW76F1X	16:9	NA	common	16:9
-PT_GSS468PJ	16:9	NA	common	16:9
+PT_ER1C7KPB	15:09	NA	common	15:09
+PT_EVF1DWCZ	15:09	NA	common	15:09
+PT_EW604JB3	15:09	NA	common	15:09
+PT_EXYXBDGP	16:09	NA	common	16:09
+PT_EZEMVRVT	16:09	NA	common	16:09
+PT_F27Y48H0	16:09	NA	common	16:09
+PT_FAD8FQ6S	15:09	NA	common	15:09
+PT_FC0EF5ZT	16:09	NA	common	16:09
+PT_FKWCVXNC	16:09	NA	common	16:09
+PT_GAKHC0Y2	16:09	NA	common	16:09
+PT_GCKT4FJX	16:09	NA	common	16:09
+PT_GKFQN9WV	15:09	NA	common	15:09
+PT_GKN1EAW9	16:09	NA	common	16:09
+PT_GMQ1TQAF	15:09	NA	common	15:09
+PT_GNW76F1X	16:09	NA	common	16:09
+PT_GSS468PJ	16:09	NA	common	16:09
 PT_H0HWHRPB	18:10	NA	common	18:10
-PT_H57TEQDT	16:9	NA	common	16:9
-PT_HGHV85PZ	16:9	NA	common	16:9
-PT_HV6C0T34	15:9	NA	common	15:9
-PT_HXV713W6	16:9	NA	common	16:9
-PT_J0SZ1SX5	15:9	NA	common	15:9
-PT_J4AD2XSC	16:9	NA	common	16:9
-PT_J5510ETN	16:9	NA	common	16:9
-PT_JDAGM28V	16:9	NA	common	16:9
-PT_JGHYFZ35	15:9	NA	common	15:9
-PT_JMW6Q6NH	15:9	NA	common	15:9
-PT_JPWVCTAJ	15:9	NA	common	15:9
-PT_JQ45JK94	16:9	NA	common	16:9
-PT_JVCZXNA8	16:9	NA	common	16:9
-PT_JXGMAHHN	16:9	NA	common	16:9
-PT_JYZA0PNV	16:9	NA	common	16:9
-PT_K30AWQ8A	15:9	NA	common	15:9
-PT_K63972GG	15:9	NA	common	15:9
-PT_KM0MSXCZ	15:9	NA	common	15:9
-PT_KQK98ZVP	16:9	NA	common	16:9
-PT_KXB1PJV0	15:9	NA	common	15:9
-PT_M5HDHQNQ	16:9	NA	common	16:9
+PT_H57TEQDT	16:09	NA	common	16:09
+PT_HGHV85PZ	16:09	NA	common	16:09
+PT_HV6C0T34	15:09	NA	common	15:09
+PT_HXV713W6	16:09	NA	common	16:09
+PT_J0SZ1SX5	15:09	NA	common	15:09
+PT_J4AD2XSC	16:09	NA	common	16:09
+PT_J5510ETN	16:09	NA	common	16:09
+PT_JDAGM28V	16:09	NA	common	16:09
+PT_JGHYFZ35	15:09	NA	common	15:09
+PT_JMW6Q6NH	15:09	NA	common	15:09
+PT_JPWVCTAJ	15:09	NA	common	15:09
+PT_JQ45JK94	16:09	NA	common	16:09
+PT_JVCZXNA8	16:09	NA	common	16:09
+PT_JXGMAHHN	16:09	NA	common	16:09
+PT_JYZA0PNV	16:09	NA	common	16:09
+PT_K30AWQ8A	15:09	NA	common	15:09
+PT_K63972GG	15:09	NA	common	15:09
+PT_KM0MSXCZ	15:09	NA	common	15:09
+PT_KQK98ZVP	16:09	NA	common	16:09
+PT_KXB1PJV0	15:09	NA	common	15:09
+PT_M5HDHQNQ	16:09	NA	common	16:09
 PT_M97ZCS35	16:11	NA	common	16:11
-PT_M9KRWVTD	15:9	NA	common	15:9
-PT_MDJXRAB5	16:9	NA	common	16:9
-PT_ME0JMDEB	15:9	NA	common	15:9
-PT_MFNW2QEB	16:9	NA	common	16:9
-PT_MGZXMQD8	16:9	NA	common	16:9
+PT_M9KRWVTD	15:09	NA	common	15:09
+PT_MDJXRAB5	16:09	NA	common	16:09
+PT_ME0JMDEB	15:09	NA	common	15:09
+PT_MFNW2QEB	16:09	NA	common	16:09
+PT_MGZXMQD8	16:09	NA	common	16:09
 PT_MNR94DEV	18:10	NA	common	18:10
-PT_MPRBGGEJ	16:9	NA	common	16:9
-PT_N4563ERM	16:9	NA	common	16:9
-PT_N8VZWF99	16:9	NA	common	16:9
+PT_MPRBGGEJ	16:09	NA	common	16:09
+PT_N4563ERM	16:09	NA	common	16:09
+PT_N8VZWF99	16:09	NA	common	16:09
 PT_N9CGVG02	16:11	NA	common	16:11
 PT_N9SG16EC	16:11	NA	common	16:11
-PT_NHX9RARA	16:9	NA	common	16:9
-PT_NPHZQW6A	16:9	NA	common	16:9
-PT_NTK39NNV	16:9	NA	common	16:9
-PT_P8SRH6R7	16:9	NA	common	16:9
-PT_PFA762TK	16:9	NA	common	16:9
-PT_PPY9WF29	16:9	NA	common	16:9
-PT_PQ6C5RYR	15:9	NA	common	15:9
-PT_Q25V9Y6M	16:9	NA	common	16:9
-PT_Q3EP24V1	15:9	NA	common	15:9
-PT_Q67XP004	15:9	NA	common	15:9
-PT_QJDY4Y9P	16:9	NA	common	16:9
-PT_QK1GTVW1	16:9	NA	common	16:9
+PT_NHX9RARA	16:09	NA	common	16:09
+PT_NPHZQW6A	16:09	NA	common	16:09
+PT_NTK39NNV	16:09	NA	common	16:09
+PT_P8SRH6R7	16:09	NA	common	16:09
+PT_PFA762TK	16:09	NA	common	16:09
+PT_PPY9WF29	16:09	NA	common	16:09
+PT_PQ6C5RYR	15:09	NA	common	15:09
+PT_Q25V9Y6M	16:09	NA	common	16:09
+PT_Q3EP24V1	15:09	NA	common	15:09
+PT_Q67XP004	15:09	NA	common	15:09
+PT_QJDY4Y9P	16:09	NA	common	16:09
+PT_QK1GTVW1	16:09	NA	common	16:09
 PT_QRWAYJBN	16:11	NA	common	16:11
-PT_QT9T89S5	15:9	NA	common	15:9
-PT_QZ3KCBSC	16:9	NA	common	16:9
-PT_R0M1QBY4	15:9	NA	common	15:9
-PT_R3MXG7SY	15:9	NA	common	15:9
-PT_R86EY5TZ	16:9	NA	common	16:9
-PT_RAWTAK5M	16:9	NA	common	16:9
-PT_RC1THQGJ	16:9	NA	common	16:9
+PT_QT9T89S5	15:09	NA	common	15:09
+PT_QZ3KCBSC	16:09	NA	common	16:09
+PT_R0M1QBY4	15:09	NA	common	15:09
+PT_R3MXG7SY	15:09	NA	common	15:09
+PT_R86EY5TZ	16:09	NA	common	16:09
+PT_RAWTAK5M	16:09	NA	common	16:09
+PT_RC1THQGJ	16:09	NA	common	16:09
 PT_RFF7MKTC	16:11	NA	common	16:11
-PT_RV0RDER2	16:9	NA	common	16:9
-PT_S0PBN4M7	16:9	NA	common	16:9
+PT_RV0RDER2	16:09	NA	common	16:09
+PT_S0PBN4M7	16:09	NA	common	16:09
 PT_S1CYDVZW	16:11	NA	common	16:11
-PT_S2CXXZCF	16:9	NA	common	16:9
-PT_S3FJSBJT	16:9	NA	common	16:9
+PT_S2CXXZCF	16:09	NA	common	16:09
+PT_S3FJSBJT	16:09	NA	common	16:09
 PT_S4J0JZAA	16:11	NA	common	16:11
-PT_S9ZZSZHR	16:9	NA	common	16:9
+PT_S9ZZSZHR	16:09	NA	common	16:09
 PT_SBHN5F68	18:10	NA	common	18:10
-PT_SCTH1RQ0	16:9	NA	common	16:9
+PT_SCTH1RQ0	16:09	NA	common	16:09
 PT_SDK91A16	18:10	NA	common	18:10
 PT_SJEG0MKD	16:11	NA	common	16:11
-PT_SMDEQVHJ	16:9	NA	common	16:9
-PT_T58EGJRX	16:9	NA	common	16:9
-PT_TB8HPJBN	16:9	NA	common	16:9
-PT_TEBD1SES	16:9	NA	common	16:9
-PT_TH18S0JQ	16:9	NA	common	16:9
-PT_TN2KF4SA	16:9	NA	common	16:9
-PT_TPSMT960	16:9	NA	common	16:9
+PT_SMDEQVHJ	16:09	NA	common	16:09
+PT_T58EGJRX	16:09	NA	common	16:09
+PT_TB8HPJBN	16:09	NA	common	16:09
+PT_TEBD1SES	16:09	NA	common	16:09
+PT_TH18S0JQ	16:09	NA	common	16:09
+PT_TN2KF4SA	16:09	NA	common	16:09
+PT_TPSMT960	16:09	NA	common	16:09
 PT_TRZ1N1HQ	16:11	NA	common	16:11
-PT_TS0FW57Z	16:9	NA	common	16:9
-PT_TTQ3KXDH	16:9	NA	common	16:9
-PT_V07ZH5JS	16:9	NA	common	16:9
-PT_V4NJP4PW	16:9	NA	common	16:9
+PT_TS0FW57Z	16:09	NA	common	16:09
+PT_TTQ3KXDH	16:09	NA	common	16:09
+PT_V07ZH5JS	16:09	NA	common	16:09
+PT_V4NJP4PW	16:09	NA	common	16:09
 PT_VABP80N2	16:11	NA	common	16:11
 PT_VGXHFMND	18:10	NA	common	18:10
-PT_VJ0M4E8Y	16:9	NA	common	16:9
-PT_VT6QDTP4	16:9	NA	common	16:9
+PT_VJ0M4E8Y	16:09	NA	common	16:09
+PT_VT6QDTP4	16:09	NA	common	16:09
 PT_VTK4R2BC	16:11	NA	common	16:11
-PT_W3FSA7NH	16:9	NA	common	16:9
+PT_W3FSA7NH	16:09	NA	common	16:09
 PT_W5Z2VB5Z	16:11	NA	common	16:11
-PT_WEY5N1C5	16:9	NA	common	16:9
-PT_WGWMA5AZ	16:9	NA	common	16:9
-PT_WS6JY9KY	15:9	NA	common	15:9
-PT_WVC247PK	16:9	NA	common	16:9
+PT_WEY5N1C5	16:09	NA	common	16:09
+PT_WGWMA5AZ	16:09	NA	common	16:09
+PT_WS6JY9KY	15:09	NA	common	15:09
+PT_WVC247PK	16:09	NA	common	16:09
 PT_WW0M48CT	16:11	NA	common	16:11
-PT_WYF217NZ	16:9	NA	common	16:9
-PT_X1PRY0FC	15:9	NA	common	15:9
-PT_X4PV4FBS	15:9	NA	common	15:9
-PT_X9NNW2E7	16:9	NA	common	16:9
-PT_XAR3V6N6	16:9	NA	common	16:9
-PT_XB59JD00	16:9	NA	common	16:9
-PT_XBSCF601	16:9	NA	common	16:9
-PT_XD66MEPC	16:9	NA	common	16:9
-PT_XDV8W16W	16:9	NA	common	16:9
-PT_XK7P4PAC	16:9	NA	common	16:9
-PT_XPDTCGRR	16:9	NA	common	16:9
-PT_XPS6EJCM	16:9	NA	common	16:9
-PT_XSS1ANXD	16:9	NA	common	16:9
-PT_XWVQW6JX	16:9	NA	common	16:9
-PT_XXZHRPNM	15:9	NA	common	15:9
-PT_XZGWKXC5	16:9	NA	common	16:9
-PT_Y572BRC1	15:9	NA	common	15:9
-PT_Y879MGBY	16:9	NA	common	16:9
-PT_YD68JETJ	15:9	NA	common	15:9
-PT_YDFPMXAR	16:9	NA	common	16:9
+PT_WYF217NZ	16:09	NA	common	16:09
+PT_X1PRY0FC	15:09	NA	common	15:09
+PT_X4PV4FBS	15:09	NA	common	15:09
+PT_X9NNW2E7	16:09	NA	common	16:09
+PT_XAR3V6N6	16:09	NA	common	16:09
+PT_XB59JD00	16:09	NA	common	16:09
+PT_XBSCF601	16:09	NA	common	16:09
+PT_XD66MEPC	16:09	NA	common	16:09
+PT_XDV8W16W	16:09	NA	common	16:09
+PT_XK7P4PAC	16:09	NA	common	16:09
+PT_XPDTCGRR	16:09	NA	common	16:09
+PT_XPS6EJCM	16:09	NA	common	16:09
+PT_XSS1ANXD	16:09	NA	common	16:09
+PT_XWVQW6JX	16:09	NA	common	16:09
+PT_XXZHRPNM	15:09	NA	common	15:09
+PT_XZGWKXC5	16:09	NA	common	16:09
+PT_Y572BRC1	15:09	NA	common	15:09
+PT_Y879MGBY	16:09	NA	common	16:09
+PT_YD68JETJ	15:09	NA	common	15:09
+PT_YDFPMXAR	16:09	NA	common	16:09
 PT_YGN06RPZ	16:11	NA	common	16:11
-PT_YJBPEF4V	16:9	NA	common	16:9
-PT_YJGTKDV0	16:9	NA	common	16:9
+PT_YJBPEF4V	16:09	NA	common	16:09
+PT_YJGTKDV0	16:09	NA	common	16:09
 PT_YKVK5HTK	16:11	NA	common	16:11
-PT_YRMG61G8	16:9	NA	common	16:9
-PT_YSEPNM92	16:9	NA	common	16:9
-PT_Z9BN2V4W	16:9	NA	common	16:9
-PT_ZD9AYB6F	16:9	NA	common	16:9
+PT_YRMG61G8	16:09	NA	common	16:09
+PT_YSEPNM92	16:09	NA	common	16:09
+PT_Z9BN2V4W	16:09	NA	common	16:09
+PT_ZD9AYB6F	16:09	NA	common	16:09
 PT_ZMV2RMK3	16:11	NA	common	16:11
-PT_ZR8MQRVG	16:9	NA	common	16:9
-PT_ZVV78QP5	16:9	NA	common	16:9
+PT_ZR8MQRVG	16:09	NA	common	16:09
+PT_ZVV78QP5	16:09	NA	common	16:09
 PT_1M94P9BT	NA	10:11	rare	rare
 PT_2YT37G8P	NA	15:11	rare	rare
-PT_3SF3NQ43	NA	13:9	rare	rare
-PT_6TKJRSPW	NA	14:8	rare	rare
+PT_3SF3NQ43	NA	13:09	rare	rare
+PT_6TKJRSPW	NA	14:08	rare	rare
 PT_86YTXPJ9	NA	15:11	rare	rare
 PT_BDZ9D5AH	NA	12:10	rare	rare
-PT_C2VY5NM6	NA	10:9	rare	rare
+PT_C2VY5NM6	NA	10:09	rare	rare
 PT_EN4G7A9Z	NA	15:11	rare	rare
 PT_FVHNJ901	NA	16:10	rare	rare
 PT_GKWWWJ0X	NA	10:11	rare	rare
 PT_GQZ84ACS	NA	15:11	rare	rare
 PT_HZ13HD7K	NA	15:11	rare	rare
 PT_P9RT6693	NA	15:11	rare	rare
-PT_PZAXT2BJ	NA	14:8	rare	rare
+PT_PZAXT2BJ	NA	14:08	rare	rare
 PT_Q6CGR1G6	NA	13:11	rare	rare
-PT_SKXVTDKK	NA	13:9	rare	rare
+PT_SKXVTDKK	NA	13:09	rare	rare
 PT_SRZ6S76Y	NA	15:11	rare	rare
 PT_VQDNSYXM	NA	19:11	rare	rare
-PT_WESDNVM3	NA	13:9	rare	rare
-PT_WFQNVJ4Z	NA	19:9	rare	rare
+PT_WESDNVM3	NA	13:09	rare	rare
+PT_WFQNVJ4Z	NA	19:09	rare	rare
 PT_ZQE1ZSB9	NA	13:11	rare	rare
diff --git a/analyses/braf-fusions/results/braf-fusions-exon-annotation.tsv b/analyses/braf-fusions/results/braf-fusions-exon-annotation.tsv
index 5bc8bf9b..9bd2a068 100644
--- a/analyses/braf-fusions/results/braf-fusions-exon-annotation.tsv
+++ b/analyses/braf-fusions/results/braf-fusions-exon-annotation.tsv
@@ -1,261 +1,261 @@
 Sample	FusionName	LeftBreakpoint	RightBreakpoint	DomainRetainedGene1A	DomainRetainedGene1B	Gene1A	Gene2A	Gene1B	Gene2B	Gene1A_anno	Gene1B_anno	Gene2A_anno	Gene2B_anno	Fusion_anno	CalledBy	caller.count	reciprocal_exists	Kids_First_Participant_ID	annots	BreakpointLocation	Fusion_Type	Chromosome	LeftBreakpoint_position	RightBreakpoint_position	left_exon_id	left_exon_rank	right_exon_id	right_exon_rank	breakpoint_exons	breakpoint_type
 BS_063ERW0R	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_3V5GTCJR	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
 BS_063ERW0R	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_3V5GTCJR	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_063ERW0R	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_3V5GTCJR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_063ERW0R	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_3V5GTCJR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_06AMMCXR	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Q3EP24V1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_0D5VRAKC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_7TVR7AJ2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_0J9SHHSC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WVC247PK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_063ERW0R	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_3V5GTCJR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_063ERW0R	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_3V5GTCJR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_06AMMCXR	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Q3EP24V1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_0D5VRAKC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_7TVR7AJ2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_0J9SHHSC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WVC247PK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_0SCXXM6N	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_SMDEQVHJ	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_0SCXXM6N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_SMDEQVHJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_0SCXXM6N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_SMDEQVHJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_0WVJYM9R	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_MNR94DEV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
 BS_0Y5J2AQ4	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_SRZ6S76Y	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
-BS_13CGKADW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_WGWMA5AZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_166N7SZQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_GNW76F1X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_17WYVEEC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_FKWCVXNC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_13CGKADW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_WGWMA5AZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_166N7SZQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_GNW76F1X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_17WYVEEC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_FKWCVXNC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_1DECYC4K	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2HWA1TA9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_1HYS8CSC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XBSCF601	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	frameshift	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_1JDG6JV5	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_CK41DW03	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_1HYS8CSC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XBSCF601	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	frameshift	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_1JDG6JV5	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_CK41DW03	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_1VNMJHMN	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_773ZPTEB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_1Z9AX9JS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_62G82T6Q	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_1ZVXF5FE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TS0FW57Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_1Z9AX9JS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_62G82T6Q	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_1ZVXF5FE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TS0FW57Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_21RE8W46	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_VABP80N2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_29TRQXWM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XPDTCGRR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_29TRQXWM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XPDTCGRR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_2ADZNNV4	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_NTK39NNV	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
 BS_2ADZNNV4	BRAF--KIAA1549	7:140781576	7:138871362	Partial	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_NTK39NNV	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140781576	138871362	ENSE00003559218	11	ENSE00001088067	13	13:11	rare/novel
-BS_2ADZNNV4	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_NTK39NNV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_2QCQYY6M	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_ER1C7KPB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_2WPQ8YCW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_KQK98ZVP	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_2XM08BFY	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_PPY9WF29	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_304SPN6B	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_49KEX2FK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_3GAN6Q43	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BDPH0Z9G	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_3Q0GTSYH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_KXB1PJV0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_3VJ0CA6A	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_2VYJXHHQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_3Y2X2RBJ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BVA0H9T9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_42DY6WS7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_12JTZFC2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_2ADZNNV4	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_NTK39NNV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_2QCQYY6M	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_ER1C7KPB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_2WPQ8YCW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_KQK98ZVP	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_2XM08BFY	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_PPY9WF29	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_304SPN6B	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_49KEX2FK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_3GAN6Q43	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BDPH0Z9G	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_3Q0GTSYH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_KXB1PJV0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_3VJ0CA6A	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_2VYJXHHQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_3Y2X2RBJ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BVA0H9T9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_42DY6WS7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_12JTZFC2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_42Y3YANN	KIAA1549--BRAF	7:138867975	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_BDNE55YT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	frameshift	7	138867975	140783157	ENSE00001088071	15	ENSE00003685923	10	15:10	rare/novel
-BS_42Y3YANN	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_BDNE55YT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_470DYRJQ	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0EWY6S6S	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_42Y3YANN	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_BDNE55YT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_470DYRJQ	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0EWY6S6S	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_49852ZBH	BRAF--KIAA1549	7:140734617	7:138871362	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_5VAKED5F	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138871362	ENSE00003830897	18	ENSE00001088067	13	13:18	rare/novel
 BS_49852ZBH	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_5VAKED5F	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
 BS_49852ZBH	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_5VAKED5F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_4A45GGSW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_QJDY4Y9P	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_4A45GGSW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_QJDY4Y9P	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_4BWB0FA0	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_EXYXBDGP	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_4BWB0FA0	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_EXYXBDGP	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_4C4MZ4NT	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_A9F8Y6MA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_4CXE5XEP	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_AYV78KT9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_4BWB0FA0	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_EXYXBDGP	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_4C4MZ4NT	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_A9F8Y6MA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_4CXE5XEP	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_AYV78KT9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_4HQ3T2NC	BRAF--KIAA1549	7:140734617	7:138871362	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_6N1QWCXE	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138871362	ENSE00003830897	18	ENSE00001088067	13	13:18	rare/novel
 BS_4HQ3T2NC	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_6N1QWCXE	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_4XH092HE	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TRZ1N1HQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_4Y6BCYK5	BRAF--KIAA1549	7:140739812	7:138861456	Partial	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_N9SG16EC	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140739812	138861456	ENSE00003551608	17	ENSE00001088064	16	16:17	rare/novel
 BS_4Y6BCYK5	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_N9SG16EC	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
 BS_4Y6BCYK5	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_N9SG16EC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_4Y93HVP4	KIAA1549--BRAF	7:138840133	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WFQNVJ4Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138840133	140787584	ENSE00000833424	19	ENSE00003680515	9	19:9	rare/novel
-BS_52426AMF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_3HRS5CWF	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_52DAPP1Y	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WYF217NZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_534XRSNB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_6VKN63HK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_4Y93HVP4	KIAA1549--BRAF	7:138840133	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WFQNVJ4Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138840133	140787584	ENSE00000833424	19	ENSE00003680515	9	19:09	rare/novel
+BS_52426AMF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_3HRS5CWF	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_52DAPP1Y	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WYF217NZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_534XRSNB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_6VKN63HK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_53GQKVEX	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_GQZ84ACS	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
 BS_53GQKVEX	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_GQZ84ACS	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_55P8HPYD	BRAF--KIAA1549	7:140734617	7:138861456	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_Q25V9Y6M	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140734617	138861456	ENSE00003830897	18	ENSE00001088064	16	16:18	rare/novel
-BS_55P8HPYD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_Q25V9Y6M	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_5J5D3QTD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DDQCAZJG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_55P8HPYD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_Q25V9Y6M	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_5J5D3QTD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DDQCAZJG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_5PEFNDCY	KIAA1549--BRAF	7:138840133	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_VQDNSYXM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138840133	140781693	ENSE00000833424	19	ENSE00003559218	11	19:11	rare/novel
-BS_5PV5N4HQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_YRMG61G8	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_5PV5N4HQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_YRMG61G8	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_5YJEPPTP	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_RFF7MKTC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_66ABA973	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0K0DPVF6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_66ABA973	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0K0DPVF6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_66HQ3E4Z	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_AC5SD9AC	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_66HQ3E4Z	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_AC5SD9AC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_66HQ3E4Z	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_AC5SD9AC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_6N3AFF66	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_SBHN5F68	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
-BS_769BDPDB	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2FVTD0WR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_775HDFNY	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_GCKT4FJX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_7M3FNSYK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_2GTHCPXB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_7N0B2CY1	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_NPHZQW6A	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_7P83Z28P	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_K63972GG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_7Z93ZYMS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_3J0ASVHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_769BDPDB	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2FVTD0WR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_775HDFNY	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_GCKT4FJX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_7M3FNSYK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_2GTHCPXB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_7N0B2CY1	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_NPHZQW6A	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_7P83Z28P	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_K63972GG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_7Z93ZYMS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_3J0ASVHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_8J3B6ZB6	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_EF398HVC	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
 BS_8J3B6ZB6	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_EF398HVC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
 BS_8VAZSJEN	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_6R95FQT2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
-BS_94MT16N2	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JYZA0PNV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_9F09XV62	KIAA1549--BRAF	7:138894342	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_C2VY5NM6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138894342	140787584	ENSE00001088073	10	ENSE00003680515	9	10:9	rare/novel
+BS_94MT16N2	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JYZA0PNV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_9F09XV62	KIAA1549--BRAF	7:138894342	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_C2VY5NM6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138894342	140787584	ENSE00001088073	10	ENSE00003680515	9	10:09	rare/novel
 BS_9Q6Z6VJC	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_M5HDHQNQ	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_9Q6Z6VJC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_M5HDHQNQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_9Q6Z6VJC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_M5HDHQNQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_9SJWWYQ4	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_3CVMBGD7	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_A13BMEF5	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TB8HPJBN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_A1VEGWTR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_5ABCFCSK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_A13BMEF5	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TB8HPJBN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_A1VEGWTR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_5ABCFCSK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_A76PNWQS	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_86YTXPJ9	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
-BS_A96FKXN5	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_QZ3KCBSC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_A96FKXN5	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_QZ3KCBSC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_AM0BZ61K	KIAA1549--BRAF	7:138866056	7:140790463	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_GSQJ4YFX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	other	7	138866056	140790463	NA	NA	NA	NA	NA	NA
-BS_ATHSTZ5R	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_AX5NM47X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_B7GEH89C	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_H57TEQDT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_B7X8VXQ3	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_FAD8FQ6S	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_BGRPWBNG	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JXGMAHHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_BJBM0BN7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DZ86YXN6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_BN986DF6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_PFA762TK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_ATHSTZ5R	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_AX5NM47X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_B7GEH89C	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_H57TEQDT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_B7X8VXQ3	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_FAD8FQ6S	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_BGRPWBNG	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JXGMAHHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_BJBM0BN7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DZ86YXN6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_BN986DF6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_PFA762TK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_BPSTSCBJ	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_ATE3YRH5	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
 BS_BPSTSCBJ	BRAF--KIAA1549	7:140781576	7:138871362	Partial	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_ATE3YRH5	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140781576	138871362	ENSE00003559218	11	ENSE00001088067	13	13:11	rare/novel
-BS_BPSTSCBJ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_ATE3YRH5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_BPSTSCBJ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_ATE3YRH5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_BZCTXEPJ	KIAA1549--BRAF	7:138865082	7:140789309	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BTS1T9E8	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	other	7	138865082	140789309	NA	NA	NA	NA	NA	NA
-BS_C0NEVC2B	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_EVF1DWCZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_C6SKJG3N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XDV8W16W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_C7A2TYAC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_JXGMAHHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_CB6VK7PB	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_JMW6Q6NH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_CGB2WS2A	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_VJ0M4E8Y	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_CKX8RW1J	KIAA1549--BRAF	7:138840133	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WFQNVJ4Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138840133	140787584	ENSE00000833424	19	ENSE00003680515	9	19:9	rare/novel
-BS_DMJHAG9X	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7VNN8JMM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_DPF1CX0G	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_ZVV78QP5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_C0NEVC2B	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_EVF1DWCZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_C6SKJG3N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XDV8W16W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_C7A2TYAC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_JXGMAHHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_CB6VK7PB	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_JMW6Q6NH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_CGB2WS2A	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_VJ0M4E8Y	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_CKX8RW1J	KIAA1549--BRAF	7:138840133	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WFQNVJ4Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138840133	140787584	ENSE00000833424	19	ENSE00003680515	9	19:09	rare/novel
+BS_DMJHAG9X	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7VNN8JMM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_DPF1CX0G	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_ZVV78QP5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_DSS3S5XD	BRAF--KIAA1549	7:140734617	7:138871362	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_SDK91A16	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138871362	ENSE00003830897	18	ENSE00001088067	13	13:18	rare/novel
 BS_DSS3S5XD	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_SDK91A16	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
-BS_DV86M0Y7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2Z7GVDTM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_E2DEWCSK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_NHX9RARA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_EFEZB0ZH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_DW6V5V8E	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_EN2VK7NY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_DV86M0Y7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2Z7GVDTM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_E2DEWCSK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_NHX9RARA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_EFEZB0ZH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_DW6V5V8E	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_EN2VK7NY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_ET8CJXSF	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_VGXHFMND	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
-BS_F1K9QTBS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_N8VZWF99	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_F8N6CFQE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EZEMVRVT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_F1K9QTBS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_N8VZWF99	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_F8N6CFQE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EZEMVRVT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_FJWZ3M7V	BRAF--KIAA1549	7:140781576	7:138871362	Partial	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_X1PRY0FC	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140781576	138871362	ENSE00003559218	11	ENSE00001088067	13	13:11	rare/novel
-BS_FJWZ3M7V	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_X1PRY0FC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_FZ62GZGV	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_18JCZJ25	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_G1DAGKSY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_KM0MSXCZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_G5QBBHDV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_27FDWCVZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_G9XE3N9T	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2VSDT9CK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_GCA4GET3	KIAA1549--BRAF	7:138869538	7:140794467	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_6TKJRSPW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138869538	140794467	ENSE00001088072	14	ENSE00003569635	8	14:8	rare/novel
-BS_GHNJ4CYC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_1J2DT6MM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_GYA4V1RD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XWVQW6JX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_FJWZ3M7V	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_X1PRY0FC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_FZ62GZGV	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_18JCZJ25	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_G1DAGKSY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_KM0MSXCZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_G5QBBHDV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_27FDWCVZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_G9XE3N9T	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2VSDT9CK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_GCA4GET3	KIAA1549--BRAF	7:138869538	7:140794467	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_6TKJRSPW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138869538	140794467	ENSE00001088072	14	ENSE00003569635	8	14:08	rare/novel
+BS_GHNJ4CYC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_1J2DT6MM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_GYA4V1RD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XWVQW6JX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_GYXSDZ56	BRAF--KIAA1549	7:140734617	7:138871362	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_5P3XJ97K	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138871362	ENSE00003830897	18	ENSE00001088067	13	13:18	rare/novel
 BS_GYXSDZ56	BRAF--KIAA1549	7:140785689	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_5P3XJ97K	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140785689	138861456	NA	NA	ENSE00001088064	16	16:NA	rare/novel
-BS_GYXSDZ56	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_5P3XJ97K	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_H3FE3TH9	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_1BV6ND1D	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_H8A9PSYA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XSS1ANXD	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_H9EX5WX3	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_J4AD2XSC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_HNMQ7488	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_X9NNW2E7	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_HQ5BJ6MW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_E1TRJP8V	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_HSHN8PBB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_E78NHRWQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_GYXSDZ56	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_5P3XJ97K	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_H3FE3TH9	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_1BV6ND1D	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_H8A9PSYA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_XSS1ANXD	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_H9EX5WX3	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_J4AD2XSC	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_HNMQ7488	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_X9NNW2E7	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_HQ5BJ6MW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_E1TRJP8V	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_HSHN8PBB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_E78NHRWQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_HSTNFPKW	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_M97ZCS35	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_HV8PFRBR	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_DEYCW197	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_HV8PFRBR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_DEYCW197	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_JMHG7GCN	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5CNZ47XV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_JVA2NQFF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_4TASAQKA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_JWSR581E	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_6E8JYRXM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_HV8PFRBR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_DEYCW197	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_JMHG7GCN	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5CNZ47XV	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_JVA2NQFF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_4TASAQKA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_JWSR581E	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_6E8JYRXM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_K2N1WEZ7	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EN4G7A9Z	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_K2VYFVKZ	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_PFA762TK	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_K2VYFVKZ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_PFA762TK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_K7MVS0Z7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_ADTP7EHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_K2VYFVKZ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_PFA762TK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_K7MVS0Z7	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_ADTP7EHN	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_KEA474HN	BRAF--KIAA1549	7:140734617	7:138919438	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_EQ5C5TEA	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138919438	ENSE00003830897	18	ENSE00001737714	2	2:18	rare/novel
 BS_KEA474HN	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_EQ5C5TEA	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
 BS_M4TTKPNR	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_YKVK5HTK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_M8M56Z4Y	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_K30AWQ8A	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_MBSTWZA6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_9C2G356W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_M8M56Z4Y	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_K30AWQ8A	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_MBSTWZA6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_9C2G356W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_MF9X3PKH	BRAF--KIAA1549	7:140734617	7:138871362	Yes	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_XXZHRPNM	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140734617	138871362	ENSE00003830897	18	ENSE00001088067	13	13:18	rare/novel
-BS_MF9X3PKH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_XXZHRPNM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_MF9X3PKH	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_XXZHRPNM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_MX92FD6D	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_047YGDRW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_N1E0H8YQ	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_CGPJY881	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_N1E0H8YQ	BRAF--KIAA1549	7:140787548	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_CGPJY881	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140787548	138861456	ENSE00003680515	9	ENSE00001088064	16	16:9	common
-BS_N1E0H8YQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_CGPJY881	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_N210XMKR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_C95KPXSW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_N1E0H8YQ	BRAF--KIAA1549	7:140787548	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_CGPJY881	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140787548	138861456	ENSE00003680515	9	ENSE00001088064	16	16:09	common
+BS_N1E0H8YQ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_CGPJY881	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_N210XMKR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_C95KPXSW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_N6NE6B3W	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_H0HWHRPB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
-BS_N7VQ1GQB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_8J4EYY40	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_N87X1T8T	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_VT6QDTP4	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_N7VQ1GQB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_8J4EYY40	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_N87X1T8T	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_VT6QDTP4	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_NB5XWMJT	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_ZR8MQRVG	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
 BS_NB5XWMJT	BRAF--KIAA1549	7:140781576	7:138868128	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_ZR8MQRVG	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138868128	ENSE00003559218	11	ENSE00001088071	15	15:11	rare/novel
-BS_NB5XWMJT	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_ZR8MQRVG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_NG9X6SJA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_WEY5N1C5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_NB5XWMJT	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_ZR8MQRVG	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_NG9X6SJA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_WEY5N1C5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_NPQJ20KX	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_6MWPJ96F	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_NPQJ20KX	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_6MWPJ96F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_NPQJ20KX	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_6MWPJ96F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_NQB91P48	KIAA1549--BRAF	7:138844317	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_C1M4YF1R	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138844317	140783157	ENSE00001088066	18	ENSE00003685923	10	18:10	common
 BS_NRFQEQKP	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_3RN24N9X	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_NRFQEQKP	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_3RN24N9X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_NRPG5K4K	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_NT9NZYFD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_FC0EF5ZT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_NY5T05AK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Y879MGBY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_P2Y2NANM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Z9BN2V4W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_PDVD0GCM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EGGE4SGY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_PEP9NZXN	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7TEHW6VQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_NRFQEQKP	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_3RN24N9X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_NRPG5K4K	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_NT9NZYFD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_FC0EF5ZT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_NY5T05AK	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Y879MGBY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_P2Y2NANM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Z9BN2V4W	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_PDVD0GCM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EGGE4SGY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_PEP9NZXN	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7TEHW6VQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_PK18H7E7	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_2YT37G8P	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_PQ7CQFYR	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_R0M1QBY4	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_PQ7CQFYR	BRAF--KIAA1549	7:140794308	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_R0M1QBY4	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140794308	138861456	ENSE00003569635	8	ENSE00001088064	16	16:8	rare/novel
+BS_PQ7CQFYR	BRAF--KIAA1549	7:140794308	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_R0M1QBY4	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140794308	138861456	ENSE00003569635	8	ENSE00001088064	16	16:08	rare/novel
 BS_PQ7CQFYR	KIAA1549--BRAF	7:138867975	7:140783157	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_R0M1QBY4	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	frameshift	7	138867975	140783157	ENSE00001088071	15	ENSE00003685923	10	15:10	rare/novel
-BS_PQ7CQFYR	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_R0M1QBY4	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_Q2PBFNDF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0QMF19PR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_Q3TBCK4V	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BK92NM09	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_PQ7CQFYR	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_R0M1QBY4	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_Q2PBFNDF	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_0QMF19PR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_Q3TBCK4V	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_BK92NM09	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_Q79NP5YY	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_4Z34K4XB	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_Q79NP5YY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_4Z34K4XB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_Q79NP5YY	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_4Z34K4XB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_QBMW69AM	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_HZ13HD7K	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_QH82PBMB	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_JQ45JK94	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_QH82PBMB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_JQ45JK94	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_QRNSKFMS	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_B5VQ16GW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_QH82PBMB	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_JQ45JK94	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_QRNSKFMS	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_B5VQ16GW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_QTSXW7DA	BRAF--KIAA1549	7:140783021	7:138905081	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_ZD9AYB6F	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140783021	138905081	ENSE00003685923	10	ENSE00000833431	7	7:10	rare/novel
-BS_QTSXW7DA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_ZD9AYB6F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_R13X6TMW	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_J0SZ1SX5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_R244Z0WX	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JPWVCTAJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_R3AJB6VS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2V5GJG0F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_QTSXW7DA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_ZD9AYB6F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_R13X6TMW	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_J0SZ1SX5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_R244Z0WX	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_JPWVCTAJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_R3AJB6VS	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_2V5GJG0F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_R9CKW9DY	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_WW0M48CT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_RAQFEB0S	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_HXV713W6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_RARBBY7C	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_56SWR1FM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_RAQFEB0S	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_HXV713W6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_RARBBY7C	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_56SWR1FM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_RGSMX7QD	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_4EDBZRM2	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_RGSMX7QD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_4EDBZRM2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_RGSMX7QD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_4EDBZRM2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_RMT7ABN6	KIAA1549--BRAF	7:138863232	7:140790377	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_08M919BH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	other	7	138863232	140790377	NA	NA	NA	NA	NA	NA
-BS_RNANA568	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XPS6EJCM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_RPJ1EPHA	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WS6JY9KY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_RNANA568	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_XPS6EJCM	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_RPJ1EPHA	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WS6JY9KY	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_RVSEDNJ4	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_HGHV85PZ	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_RVSEDNJ4	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_HGHV85PZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_RVSEDNJ4	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_HGHV85PZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_RWJZFTP9	BRAF--KIAA1549	7:140781576	7:138871362	Partial	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_S0PBN4M7	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	in-frame	7	140781576	138871362	ENSE00003559218	11	ENSE00001088067	13	13:11	rare/novel
-BS_RWJZFTP9	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_S0PBN4M7	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_S1KK7XRH	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_YJBPEF4V	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_RWJZFTP9	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_S0PBN4M7	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_S1KK7XRH	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_YJBPEF4V	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_S4V9E1XJ	KIAA1549--BRAF	7:138867975	7:140726516	NA	No	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	frameshift	7	138867975	140726516	ENSE00001088071	15	NA	NA	15:NA	rare/novel
-BS_S4V9E1XJ	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_S4V9E1XJ	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_S50KQEXV	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_MPRBGGEJ	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_S50KQEXV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_MPRBGGEJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_SDA4RMMG	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EW604JB3	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_SDZY6RZ3	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5GQ76YZJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_SDZY6RZ3	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5GQ76YZJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_SFKZSJN1	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_409Y4N1N	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_SHMC4902	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_TPSMT960	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_SXRS2P6T	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7YGZ526E	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_T0MXH2CA	KIAA1549--BRAF	7:138871157	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WESDNVM3	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138871157	140787584	ENSE00001088067	13	ENSE00003680515	9	13:9	rare/novel
+BS_S50KQEXV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_MPRBGGEJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_SDA4RMMG	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_EW604JB3	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_SDZY6RZ3	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5GQ76YZJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_SDZY6RZ3	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_5GQ76YZJ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_SFKZSJN1	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_409Y4N1N	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_SHMC4902	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_TPSMT960	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_SXRS2P6T	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_7YGZ526E	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_T0MXH2CA	KIAA1549--BRAF	7:138871157	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_WESDNVM3	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138871157	140787584	ENSE00001088067	13	ENSE00003680515	9	13:09	rare/novel
 BS_T0RKFEKR	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_AYVKQZRB	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_T0RKFEKR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_AYVKQZRB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_T1W4JA94	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_QT9T89S5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_T2QPMZCM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_6VJ5PNKS	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_T4JFN54G	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_8XZY6MM1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_T5P5ME9M	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_YDFPMXAR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_T0RKFEKR	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	TRUE	PT_AYVKQZRB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_T1W4JA94	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_QT9T89S5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_T2QPMZCM	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_6VJ5PNKS	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_T4JFN54G	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_8XZY6MM1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_T5P5ME9M	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_YDFPMXAR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_TDJXQBVY	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_D9HXS4CK	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_TV80600R	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_MDJXRAB5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_TVV122JG	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_SCTH1RQ0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_TV80600R	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_MDJXRAB5	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_TVV122JG	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_SCTH1RQ0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_V0Q1G94N	KIAA1549--BRAF	7:138867975	7:140749418	NA	Partial	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140749418	ENSE00001088071	15	ENSE00003587655	16	15:16	rare/novel
-BS_V0Q1G94N	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_V33RCK1Y	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_CRWTNE04	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
+BS_V0Q1G94N	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Y572BRC1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_V33RCK1Y	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_CRWTNE04	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
 BS_V3REENH9	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_P9RT6693	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_V72GX2AZ	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_V07ZH5JS	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_V72GX2AZ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_V07ZH5JS	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_V7BZ049H	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TTQ3KXDH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_V72GX2AZ	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_V07ZH5JS	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_V7BZ049H	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TTQ3KXDH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_V89HGTET	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_N9CGVG02	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_VARR255N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_W3FSA7NH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_VARR255N	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_W3FSA7NH	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_VP3C8WZT	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_962TCBVR	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
-BS_VP3C8WZT	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_VP3C8WZT	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_VR7FR1NE	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_6MWPJ96F	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_VR7FR1NE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_6MWPJ96F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_VR7FR1NE	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_6MWPJ96F	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_VTYNWK05	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TRZ1N1HQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_VW85Q4XJ	BRAF--KIAA1549	7:140749287	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_2YT37G8P	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140749287	138871362	ENSE00003587655	16	ENSE00001088067	13	13:16	rare/novel
 BS_VW85Q4XJ	BRAF--KIAA1549	7:140776912	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_2YT37G8P	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140776912	138871362	ENSE00003527888	13	ENSE00001088067	13	13:13	rare/novel
 BS_VW85Q4XJ	KIAA1549--BRAF	7:138867975	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_2YT37G8P	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140781693	ENSE00001088071	15	ENSE00003559218	11	15:11	rare/novel
 BS_W97QQYKQ	KIAA1549--BRAF	7:138894342	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_GKWWWJ0X	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138894342	140781693	ENSE00001088073	10	ENSE00003559218	11	10:11	rare/novel
-BS_WG203ECV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_WG203ECV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_962TCBVR	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_X16PENSA	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_50ZFWMZE	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_X16PENSA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_50ZFWMZE	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_X16PENSA	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_50ZFWMZE	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_X9EGD530	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_YGN06RPZ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_XGSA3GQE	BRAF--KIAA1549	7:140739812	7:138871362	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_HV6C0T34	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140739812	138871362	ENSE00003551608	17	ENSE00001088067	13	13:17	rare/novel
-BS_XGSA3GQE	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_HV6C0T34	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:9	common
-BS_XKKB4MZV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_RV0RDER2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_Y0PCBNJV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_S2CXXZCF	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_Y7W8BR6B	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_MFNW2QEB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_YVMEEBKC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DMHFS0HX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_YY5B2XDD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_1KEER2Q1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_YZ2Z1Q6Y	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TH18S0JQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_XGSA3GQE	KIAA1549--BRAF	7:138867975	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_HV6C0T34	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138867975	140787584	ENSE00001088071	15	ENSE00003680515	9	15:09	common
+BS_XKKB4MZV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_RV0RDER2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_Y0PCBNJV	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_S2CXXZCF	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_Y7W8BR6B	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_MFNW2QEB	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_YVMEEBKC	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_DMHFS0HX	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_YY5B2XDD	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_1KEER2Q1	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_YZ2Z1Q6Y	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TH18S0JQ	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_Z0AVVB1V	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_SJEG0MKD	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
 BS_Z0E26P1R	KIAA1549--BRAF	7:138871157	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	FALSE	PT_Q6CGR1G6	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138871157	140781693	ENSE00001088067	13	ENSE00003559218	11	13:11	rare/novel
-BS_Z6BWR941	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_YJGTKDV0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_Z6BWR941	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_YJGTKDV0	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_Z7Y2466H	KIAA1549--BRAF	7:138861139	7:140781693	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_9B6KWJT2	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140781693	ENSE00001088064	16	ENSE00003559218	11	16:11	common
-BS_ZTWGFWTX	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TEBD1SES	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
-BS_ZV9Z3SY6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_S3FJSBJT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_ZTWGFWTX	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_TEBD1SES	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
+BS_ZV9Z3SY6	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	ARRIBA	1	FALSE	PT_S3FJSBJT	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
 BS_ZZMYDZJW	BRAF--KIAA1549	7:140781576	7:138861456	No	NA	BRAF	NA	KIAA1549	NA	Kinase, CosmicCensus, Oncogene	CosmicCensus, Oncogene	NA	NA	NA	ARRIBA	1	TRUE	PT_5M8A47WW	[INTRACHROMOSOMAL[chr7:1.74Mb]], deletion	Genic	frameshift	7	140781576	138861456	ENSE00003559218	11	ENSE00001088064	16	16:11	common
-BS_ZZMYDZJW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_5M8A47WW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:9	common
+BS_ZZMYDZJW	KIAA1549--BRAF	7:138861139	7:140787584	NA	Yes	KIAA1549	NA	BRAF	NA	CosmicCensus, Oncogene	Kinase, CosmicCensus, Oncogene	NA	NA	TCGAFusion	STARFUSION, ARRIBA	2	TRUE	PT_5M8A47WW	[ChimerKB, HaasMedCancer, chimerdb_pubmed, ChimerPub, TumorFusionsNAR2018, Cosmic, ChimerSeq, INTRACHROMOSOMAL[chr7:1.74Mb]], duplication	Genic	in-frame	7	138861139	140787584	ENSE00001088064	16	ENSE00003680515	9	16:09	common
diff --git a/analyses/braf-fusions/results/lgg-braf-fusion-breakpoint-annotation.tsv b/analyses/braf-fusions/results/lgg-braf-fusion-breakpoint-annotation.tsv
index f3203ec9..13516e76 100644
--- a/analyses/braf-fusions/results/lgg-braf-fusion-breakpoint-annotation.tsv
+++ b/analyses/braf-fusions/results/lgg-braf-fusion-breakpoint-annotation.tsv
@@ -1,173 +1,173 @@
-Kids_First_Biospecimen_ID_normal	predicted_ancestry	given_ancestry	EAS_prob	AFR_prob	AMR_prob	SAS_prob	EUR_prob	PC1	PC2	PC3	PC4	PC5	Kids_First_Participant_ID	sample_type	cohort_participant_id	Kids_First_Biospecimen_ID	sample_id	reported_gender	race	ethnicity	broad_histology	cancer_group	molecular_subtype	tumor_descriptor	CNS_region	extent_of_tumor_resection	age_at_diagnosis_days	OS_days	OS_status	EFS_days	EFS_event_type	age_at_chemo_start	age_at_radiation_start	plot_group	OS_years	EFS_years	EFS_status	EUR_status	mol_sub_group	age_at_diagnosis_years	breakpoint_exons_common	breakpoint_exons_rare	breakpoint_type	breakpoint_group	match_id	dkfz_v12_methylation_subclass	AS_ancestry
-BS_50HGKMFH	EUR	NA	0	0	0.0634	0	0.9366	-0.6254	11.0288	5.8125	6.4829	1.9051	PT_JDAGM28V	Normal	C1173297	BS_WDXPT9NT	7316-4687	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4937	921	LIVING	921	Not Applicable	NA	NA	Low-grade glioma	2.521560574948665	2.521560574948665	NO EVENT	EUR	LGG, BRAF fusion	13.516769336071183	16:9	NA	common	16:9	PT_JDAGM28V_7316-4687_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_H3TV25PF	EUR	NA	0	0	0.0692	0	0.9308	0.8954	9.5496	4.6267	8.2349	2.2368	PT_9TPW6850	Normal	C2334786	BS_R7VSGBAK	7316-5279	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	831	1813	LIVING	1813	Not Applicable	NA	NA	Low-grade glioma	4.963723477070499	4.963723477070499	NO EVENT	EUR	LGG, BRAF fusion	2.2751540041067764	15:9	NA	common	15:9	PT_9TPW6850_7316-5279_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_DZDN6XCP	AMR	NA	0	0.0051	0.9834	0	0.0115	16.1974	4.7274	3.8812	7.4368	2.8476	PT_2GTHCPXB	Normal	C1198758	BS_ZSZVX4GV	7316-4736	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2228	544	LIVING	544	Not Applicable	NA	NA	Low-grade glioma	1.4893908281998631	1.4893908281998631	NO EVENT	non-EUR	LGG, BRAF fusion	6.099931553730322	16:9	NA	common	16:9	PT_2GTHCPXB_7316-4736_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_9T4AR92C	AMR	NA	2e-4	0.0052	0.99	0.001	0.0036	7.663	-0.0857	5.5694	-0.2081	-0.5152	PT_EGGE4SGY	Normal	C3293202	BS_BXP1F9HR	7316-7522	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3934	501	LIVING	501	Not Applicable	NA	NA	Low-grade glioma	1.3716632443531829	1.3716632443531829	NO EVENT	non-EUR	LGG, BRAF fusion	10.770704996577686	16:9	NA	common	16:9	PT_EGGE4SGY_7316-7522_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_SSKCPAAX	AFR	NA	0	0.6957	0.3043	0	0	28.2834	-3.0641	2.6616	4.5041	2.8844	PT_N4563ERM	Normal	C1100727	BS_JZV7KSF4	7316-4439	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2000	1945	LIVING	874	Progressive	NA	NA	Low-grade glioma	5.325119780971937	2.3928815879534566	EVENT	non-EUR	LGG, BRAF fusion	5.475701574264202	16:9	NA	common	16:9	PT_N4563ERM_7316-4439_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_VD8SPXEF	EUR	NA	0	0	0.03	0	0.97	0.6222	13.2957	6.8216	9.1645	3.5014	PT_1RYJXGCY	Normal	C3291111	BS_D9T75W2D	7316-7520	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3688	661	LIVING	661	Not Applicable	NA	NA	Low-grade glioma	1.809719370294319	1.809719370294319	NO EVENT	EUR	LGG, BRAF fusion	10.097193702943189	16:9	NA	common	16:9	PT_1RYJXGCY_7316-7520_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_3FWGBMR7	AMR	NA	0	0.2431	0.7568	0	1e-4	18.9316	-1.574	4.2927	3.7932	2.8243	PT_DDQCAZJG	Normal	C3409191	BS_6TKF4FXM	7316-8112	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3236	519	LIVING	519	Recurrence	NA	NA	Low-grade glioma	1.4209445585215603	1.4209445585215603	EVENT	non-EUR	LGG, BRAF fusion	8.85968514715948	16:9	NA	common	16:9	PT_DDQCAZJG_7316-8112_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_Z3EKFYQG	AFR	NA	0	0.9965	0.0035	0	0	49.2691	-11.4717	0.8742	2.1436	2.8909	PT_773ZPTEB	Normal	C3409314	BS_W16AZ9VZ	7316-8115	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	249	749	LIVING	443	Progressive	NA	NA	Low-grade glioma	2.0506502395619437	1.212867898699521	EVENT	non-EUR	LGG, BRAF fusion	0.6817248459958932	16:11	NA	common	16:11	PT_773ZPTEB_7316-8115_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_MHB4G2HY	SAS	NA	0	0	0	1	0	3.5408	-6.9768	-16.918	-3.503	2.0946	PT_4E3H4SBP	Normal	C3406485	BS_CA0Z7KVF	7316-8118	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2127	728	LIVING	728	Not Applicable	NA	NA	Low-grade glioma	1.9931553730321696	1.9931553730321696	NO EVENT	non-EUR	LGG, BRAF fusion	5.823408624229979	16:11	NA	common	16:11	PT_4E3H4SBP_7316-8118_Solid Tissue_Initial CNS Tumor	NA	AS
-BS_ZZ65Y5NN	EUR	NA	0	0	0.0486	0	0.9514	0.501	13.0341	3.8493	5.9513	1.7378	PT_XZGWKXC5	Normal	C3156795	BS_PDF449DD	7316-7494	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1803	997	LIVING	401	Recurrence	NA	NA	Low-grade glioma	2.729637234770705	1.0978781656399723	EVENT	EUR	LGG, BRAF fusion	4.936344969199179	16:9	NA	common	16:9	PT_XZGWKXC5_7316-7494_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_2WGC8HTM	EUR	NA	0	0	0.0473	0	0.9527	0.4607	9.6288	5.3521	9.3599	-0.1491	PT_VT6QDTP4	Normal	C1032462	BS_NY6YP0V5	7316-3962	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Gross/Near total resection	1162	636	LIVING	636	Not Applicable	NA	NA	Low-grade glioma	1.7412731006160165	1.7412731006160165	NO EVENT	EUR	LGG, BRAF fusion	3.1813826146475015	16:9	NA	common	16:9	PT_VT6QDTP4_7316-3962_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_FG0CMQJ1	EUR	NA	0	0	0.0517	0	0.9483	-0.4461	10.9822	4.3507	8.2629	1.2224	PT_5VMBPWYG	Normal	C1032585	BS_8Y232GZY	7316-3945	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	3092	581	LIVING	581	Not Applicable	NA	NA	Low-grade glioma	1.5906913073237507	1.5906913073237507	NO EVENT	EUR	LGG, BRAF fusion	8.465434633812457	16:9	NA	common	16:9	PT_5VMBPWYG_7316-3945_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_CY92PJKS	AMR	NA	0	0.2688	0.7311	0	1e-4	23.0267	2.3413	2.3201	7.3571	1.3181	PT_WFQNVJ4Z	Normal	C1026189	BS_VFEE3ACW	7316-3925	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	1895	1228	LIVING	1228	Progressive	1962	NA	Low-grade glioma	3.36208076659822	3.36208076659822	EVENT	non-EUR	LGG, BRAF fusion	5.188227241615332	NA	19:9	rare	rare	PT_WFQNVJ4Z_7316-3925_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_WE4NHYEX	EUR	NA	0	0	0.0428	0	0.9572	-0.0964	12.6622	4.3777	7.8697	2.5197	PT_QJDY4Y9P	Normal	C235422	BS_YPWPG2Y6	7316-562	Female	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4754	2358	LIVING	1302	Progressive	NA	NA	Low-grade glioma	6.455852156057495	3.564681724845996	EVENT	EUR	LGG, BRAF fusion	13.015742642026009	16:9	NA	common	16:9	PT_QJDY4Y9P_7316-562_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_W9RHJJRP	EUR	NA	0	0	0.0289	0	0.9711	-0.8586	12.0089	3.3293	10.1652	3.247	PT_XPS6EJCM	Normal	C1191378	BS_T57TTPMZ	7316-4727	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4669	1484	LIVING	1484	Not Applicable	NA	NA	Low-grade glioma	4.0629705681040384	4.0629705681040384	NO EVENT	EUR	LGG, BRAF fusion	12.78302532511978	16:9	NA	common	16:9	PT_XPS6EJCM_7316-4727_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_CGAQVHMJ	AMR	NA	0	0.0029	0.997	0	1e-4	3.1979	-1.1463	8.9469	-6.4908	0.4519	PT_MDJXRAB5	Normal	C701100	BS_RC3G012N	7316-2679	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	6459	476	LIVING	476	Not Applicable	NA	NA	Low-grade glioma	1.3032169746748803	1.3032169746748803	NO EVENT	non-EUR	LGG, BRAF fusion	17.683778234086244	16:9	NA	common	16:9	PT_MDJXRAB5_7316-2679_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_WP62R0PZ	EUR	NA	0	0	0.047	0	0.953	-1.8857	9.897	4.1421	8.3063	2.4955	PT_7TD59X9Q	Normal	C2734290	BS_HPTQDKRJ	7316-6764	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	1793	1448	LIVING	1448	Not Applicable	1807	NA	Low-grade glioma	3.9644079397672822	3.9644079397672822	NO EVENT	EUR	LGG, BRAF fusion	4.908966461327857	15:9	NA	common	15:9	PT_7TD59X9Q_7316-6764_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_DCM1WDCH	EUR	NA	0	0	0.1072	0	0.8928	4.4694	8.4847	2.5862	8.3101	0.4473	PT_S4J0JZAA	Normal	C2735028	BS_10TK5K3B	7316-6769	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1601	1484	LIVING	1484	Not Applicable	NA	NA	Low-grade glioma	4.0629705681040384	4.0629705681040384	NO EVENT	EUR	LGG, BRAF fusion	4.383299110198494	16:11	NA	common	16:11	PT_S4J0JZAA_7316-6769_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_AXNB1ZVY	AMR	NA	0	1e-4	0.5222	0	0.4778	11.6086	7.4421	4.6022	9.1841	1.6283	PT_QZ3KCBSC	Normal	C1253370	BS_22WVSVNE	7316-4939	Female	Reported Unknown	Not Available	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3828	839	LIVING	839	Not Applicable	NA	NA	Low-grade glioma	2.297056810403833	2.297056810403833	NO EVENT	non-EUR	LGG, BRAF fusion	10.480492813141684	16:9	NA	common	16:9	PT_QZ3KCBSC_7316-4939_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_WRVYGY9A	EAS	NA	0.9978	0	0.0021	1e-4	0	-4.9879	-16.2838	3.2885	6.3518	-0.4027	PT_WS6JY9KY	Normal	C2386938	BS_V0BVS7KZ	7316-4964	Female	More Than One Race	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1887	737	LIVING	737	Not Applicable	NA	NA	Low-grade glioma	2.0177960301163584	2.0177960301163584	NO EVENT	non-EUR	LGG, BRAF fusion	5.166324435318275	15:9	NA	common	15:9	PT_WS6JY9KY_7316-4964_Solid Tissue_Initial CNS Tumor	NA	AS
-BS_M0TPSWZG	EUR	NA	0	0	0.0437	0	0.9563	0.4483	12.996	2.9136	8.6179	3.7716	PT_PPY9WF29	Normal	C2406126	BS_2NEBNR18	7316-5217	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3493	967	LIVING	967	Not Applicable	NA	NA	Low-grade glioma	2.647501711156742	2.647501711156742	NO EVENT	EUR	LGG, BRAF fusion	9.56331279945243	16:9	NA	common	16:9	PT_PPY9WF29_7316-5217_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_V7ZT7BSN	EUR	NA	0	0	0.0526	0	0.9474	2.8045	11.7248	1.8444	8.5259	0.3052	PT_TTQ3KXDH	Normal	C2421747	BS_X9B4XHPR	7316-5336	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4563	1022	LIVING	1022	Not Applicable	NA	NA	Low-grade glioma	2.7980835044490076	2.7980835044490076	NO EVENT	EUR	LGG, BRAF fusion	12.492813141683778	16:9	NA	common	16:9	PT_TTQ3KXDH_7316-5336_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_B5Y01R2S	AMR	NA	0	0.004	0.996	0	0	4.674	-2.7145	10.8867	-6.4096	3.6167	PT_56SWR1FM	Normal	C1199004	BS_J791FW5S	7316-4742	Male	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3409	1888	LIVING	1888	Not Applicable	NA	NA	Low-grade glioma	5.169062286105407	5.169062286105407	NO EVENT	non-EUR	LGG, BRAF fusion	9.333333333333334	16:9	NA	common	16:9	PT_56SWR1FM_7316-4742_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_R28SHV6A	AFR	NA	0	0.9998	2e-4	0	0	62.4027	-16.5094	0.3169	2.9483	2.9041	PT_BHPBJNCP	Normal	C1174281	BS_KB1SX2N3	7316-4675	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	875	1745	LIVING	1745	Not Applicable	NA	NA	Low-grade glioma	4.777549623545517	4.777549623545517	NO EVENT	non-EUR	LGG, BRAF fusion	2.3956194387405887	16:9	NA	common	16:9	PT_BHPBJNCP_7316-4675_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_KPAR4N94	EUR	NA	0	0	0.0398	0	0.9602	1.9682	13.1437	3.2254	8.5593	1.9045	PT_QK1GTVW1	Normal	C1077357	BS_F7YNCQK9	7316-4429	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	3039	1787	LIVING	1787	Not Applicable	3111	NA	Low-grade glioma	4.892539356605065	4.892539356605065	NO EVENT	EUR	LGG, BRAF fusion	8.320328542094456	16:9	NA	common	16:9	PT_QK1GTVW1_7316-4429_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_F2VP92A0	EUR	NA	0	0	0.0771	0	0.9229	2.6377	8.9648	2.8607	9.012	2.111	PT_JGHYFZ35	Normal	C2668362	BS_S4V27HQX	7316-6649	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4093	1017	LIVING	1017	Not Applicable	NA	NA	Low-grade glioma	2.784394250513347	2.784394250513347	NO EVENT	EUR	LGG, BRAF fusion	11.206023271731691	15:9	NA	common	15:9	PT_JGHYFZ35_7316-6649_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_69BE9DWN	EUR	NA	0	0	0.1786	0	0.8214	7.1125	7.6329	0.9381	6.7405	2.0329	PT_S1CYDVZW	Normal	C2646714	BS_6R9JD2SD	7316-6306	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3839	90	LIVING	90	Not Applicable	NA	NA	Low-grade glioma	0.2464065708418891	0.2464065708418891	NO EVENT	EUR	LGG, BRAF fusion	10.510609171800136	16:11	NA	common	16:11	PT_S1CYDVZW_7316-6306_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_KDXHPBS9	EUR	NA	0	0	0.0544	0	0.9456	-0.8393	11.5222	5.9664	6.4434	4.1449	PT_BDPH0Z9G	Normal	C1233198	BS_FSMFADRW	7316-4915	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3121	1337	LIVING	1337	Not Applicable	NA	NA	Low-grade glioma	3.660506502395619	3.660506502395619	NO EVENT	EUR	LGG, BRAF fusion	8.544832306639288	16:9	NA	common	16:9	PT_BDPH0Z9G_7316-4915_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_KW2TMQQ7	EUR	NA	0	0	0.0699	0	0.9301	3.0177	10.5073	3.8241	8.3029	0.5921	PT_B5KXHZ6Q	Normal	C2421501	BS_BKZNDX9E	7316-5258	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4205	1421	LIVING	1421	Not Applicable	NA	NA	Low-grade glioma	3.890485968514716	3.890485968514716	NO EVENT	EUR	LGG, BRAF fusion	11.512662559890488	16:11	NA	common	16:11	PT_B5KXHZ6Q_7316-5258_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_4732YSHR	EUR	NA	0	0	0.0414	0	0.9586	0.7203	12.0666	4.8299	8.8903	1.9901	PT_TRZ1N1HQ	Normal	C1046730	BS_CSZBHDKV	7316-4225	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, BRAF V600E	Initial CNS Tumor	Mixed	Biopsy only	2386	2214	LIVING	463	Progressive	2408	NA	Low-grade glioma	6.061601642710472	1.267624914442163	EVENT	EUR	LGG, BRAF V600E	6.532511978097194	16:11	NA	common	16:11	PT_TRZ1N1HQ_7316-4225_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_TDJV9506	AFR	NA	0	0.9977	0.0023	0	0	51.5383	-14.5611	2.0476	1.7339	0.8911	PT_GKFQN9WV	Normal	C2439951	BS_KF27XVEJ	7316-5261	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	6225	1174	LIVING	1174	Not Applicable	NA	NA	Low-grade glioma	3.2142368240930868	3.2142368240930868	NO EVENT	non-EUR	LGG, BRAF fusion	17.04312114989733	15:9	NA	common	15:9	PT_GKFQN9WV_7316-5261_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_D2Y5QZ8Y	AFR	NA	0	0.984	0.016	0	0	42.277	-9.6789	2.095	1.1796	2.7893	PT_5XV23PWB	Normal	C1198881	BS_A22Q96VJ	7316-4738	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1995	115	LIVING	115	Not Applicable	NA	NA	Low-grade glioma	0.31485284052019163	0.31485284052019163	NO EVENT	non-EUR	LGG, BRAF fusion	5.462012320328542	16:11	NA	common	16:11	PT_5XV23PWB_7316-4738_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_J6N8C6BQ	AFR	NA	0	0.9449	0.0551	0	0	36.7353	-8.6387	3.0104	2.5186	2.098	PT_GKN1EAW9	Normal	C857679	BS_CASKCRB8	7316-3302	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1279	206	LIVING	206	Not Applicable	NA	NA	Low-grade glioma	0.5639972621492129	0.5639972621492129	NO EVENT	non-EUR	LGG, BRAF fusion	3.5017111567419574	16:9	NA	common	16:9	PT_GKN1EAW9_7316-3302_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_N5VRGAE4	SAS	NA	0	0	0	1	0	-0.271	-4.5311	-9.8255	-1.306	2.7372	PT_CRWTNE04	Normal	C2719407	BS_D67XNVBS	7316-6963	Male	Asian	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	749	955	LIVING	955	Not Applicable	NA	NA	Low-grade glioma	2.614647501711157	2.614647501711157	NO EVENT	non-EUR	LGG, BRAF fusion	2.0506502395619437	15:9	NA	common	15:9	PT_CRWTNE04_7316-6963_Solid Tissue_Initial CNS Tumor	NA	AS
-BS_W605R83E	EUR	NA	0	0	0.031	0	0.969	1.196	13.4537	4.5082	8.8722	1.375	PT_HZ13HD7K	Normal	C2899356	BS_JP1WHJNY	7316-4874	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, CDKN2A/B	Initial CNS Tumor	Mixed	Gross/Near total resection	5012	710	LIVING	535	Progressive	5526	NA	Low-grade glioma	1.943874058863792	1.4647501711156743	EVENT	EUR	LGG, BRAF fusion	13.722108145106091	NA	15:11	rare	rare	PT_HZ13HD7K_7316-4874_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_40PVF0T7	EUR	NA	0	0	0.0415	0	0.9585	0.6635	11.5355	6.1995	8.8824	2.4521	PT_AZAJRK9Z	Normal	C3512634	BS_JPVVRR84	7316-7958	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, wildtype	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2120	735	LIVING	735	Not Applicable	NA	NA	Low-grade glioma	2.0123203285420943	2.0123203285420943	NO EVENT	EUR	LGG, WT	5.804243668720055	16:9	NA	common	16:9	PT_AZAJRK9Z_7316-7958_Derived Cell Line_Initial CNS Tumor_Serum-based_8	NA	EUR
-BS_B39XQVK9	AMR	NA	0	0.0063	0.9937	0	0	-0.2444	-9.9344	11.0781	-15.0972	0.3237	PT_M97ZCS35	Normal	C330993	BS_P33TNDFC	7316-653	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	3234	1699	LIVING	1699	Not Applicable	NA	NA	Low-grade glioma	4.65160848733744	4.65160848733744	NO EVENT	non-EUR	LGG, BRAF fusion	8.854209445585216	16:11	NA	common	16:11	PT_M97ZCS35_7316-653_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_SRD4KX67	EAS	NA	0.8158	0.006	0.1767	0.0014	0	4.4298	-17.8312	-0.4692	7.4193	-2.0151	PT_SCTH1RQ0	Normal	C3778806	BS_14ANJZNN	7316-7760	Male	More Than One Race	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	412	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	1.1279945242984255	16:9	NA	common	16:9	PT_SCTH1RQ0_7316-7760_Solid Tissue_Initial CNS Tumor	NA	AS
-BS_QJ8VDF4Y	EUR	NA	0	0	0.0462	0	0.9538	0.591	12.0042	4.3169	7.6697	0.6054	PT_2VYJXHHQ	Normal	C2898864	BS_DB549DHZ	7316-6966	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	311	738	LIVING	738	Not Applicable	NA	NA	Low-grade glioma	2.020533880903491	2.020533880903491	NO EVENT	EUR	LGG, BRAF fusion	0.8514715947980835	16:9	NA	common	16:9	PT_2VYJXHHQ_7316-6966_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_6MS445WA	EUR	NA	0	0	0.0487	0	0.9513	1.1321	12.1166	3.7692	8.5114	2.3035	PT_R86EY5TZ	Normal	C3579915	BS_BA6EZCD7	7316-8743	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2220	826	LIVING	639	Recurrence	NA	NA	Low-grade glioma	2.2614647501711156	1.749486652977413	EVENT	EUR	LGG, BRAF fusion	6.078028747433265	16:9	NA	common	16:9	PT_R86EY5TZ_7316-8743_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_10R0PFJR	EUR	NA	0	0	0.0267	0	0.9733	0.7737	11.9197	5.2588	10.7726	2.631	PT_XBSCF601	Normal	C3513003	BS_7AAHZV0E	7316-7961	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5501	699	LIVING	699	Not Applicable	NA	NA	Low-grade glioma	1.9137577002053388	1.9137577002053388	NO EVENT	EUR	LGG, BRAF fusion	15.06091718001369	16:9	NA	common	16:9	PT_XBSCF601_7316-7961_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_NZBA67NR	EUR	NA	0	1e-4	0.0548	0.051	0.8941	3.2675	5.7294	-3.2601	4.2251	1.6391	PT_Y879MGBY	Normal	C2488659	BS_6BB88NQ6	7316-4866	Male	Asian	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	2408	1377	LIVING	1377	Not Applicable	2520	NA	Low-grade glioma	3.770020533880904	3.770020533880904	NO EVENT	EUR	LGG, BRAF fusion	6.5927446954141	16:9	NA	common	16:9	PT_Y879MGBY_7316-4866_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_72KFQZHK	EUR	NA	0	0	0.0335	0	0.9665	0.7952	11.7126	4.3423	10.1012	1.8126	PT_WW0M48CT	Normal	C887445	BS_EW8SRNV4	7316-3671	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Optic pathway	Biopsy only	2124	1637	LIVING	1637	Not Applicable	NA	NA	Low-grade glioma	4.48186173853525	4.48186173853525	NO EVENT	EUR	LGG, BRAF fusion	5.815195071868583	16:11	NA	common	16:11	PT_WW0M48CT_7316-3671_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_VB75WNBG	AMR	NA	0	8e-4	0.9992	0	0	-6.0458	-22.6785	20.2472	-33.1527	2.8136	PT_WESDNVM3	Normal	C753744	BS_H88T2AEG	7316-2786	Female	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Optic pathway	Biopsy only	173	2927	LIVING	749	Progressive	182	NA	Low-grade glioma	8.013689253935661	2.0506502395619437	EVENT	non-EUR	LGG, BRAF fusion	0.4736481861738535	NA	13:9	rare	rare	PT_WESDNVM3_7316-2786_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_1ZHT865M	EUR	NA	0	0	0.0738	0	0.9262	-0.4595	10.4894	5.3096	5.3035	1.4087	PT_S9ZZSZHR	Normal	C3732558	BS_CJK43QXK	7316-9027	Female	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3098	720	LIVING	720	Not Applicable	NA	NA	Low-grade glioma	1.9712525667351128	1.9712525667351128	NO EVENT	EUR	LGG, BRAF fusion	8.48186173853525	16:9	NA	common	16:9	PT_S9ZZSZHR_7316-9027_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_0K2KJKT6	EUR	NA	0	0	0.0554	0	0.9446	1.9421	11.4104	5.1106	8.4447	3.6274	PT_XK7P4PAC	Normal	C3702423	BS_98EZ22RF	7316-8854	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Partial resection	3680	670	LIVING	670	Not Applicable	3716	NA	Low-grade glioma	1.834360027378508	1.834360027378508	NO EVENT	EUR	LGG, BRAF fusion	10.075290896646132	16:9	NA	common	16:9	PT_XK7P4PAC_7316-8854_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_EQ3YJS9P	EUR	NA	0	0	0.05	0	0.95	1.5791	10.3804	3.9994	9.6044	3.4976	PT_8127P12D	Normal	C3528132	BS_JQ07XY76	7316-7967	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	950	708	LIVING	708	Not Applicable	NA	NA	Low-grade glioma	1.938398357289528	1.938398357289528	NO EVENT	EUR	LGG, BRAF fusion	2.6009582477754964	15:9	NA	common	15:9	PT_8127P12D_7316-7967_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_1WRWVYTD	EUR	NA	0	0	0.0528	0	0.9472	0.4587	11.7515	6.1556	7.6549	2.9697	PT_D9HXS4CK	Normal	C2662212	BS_CKHDFEEF	7316-6085	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4573	1065	LIVING	1065	Not Applicable	NA	NA	Low-grade glioma	2.915811088295688	2.915811088295688	NO EVENT	EUR	LGG, BRAF fusion	12.5201916495551	16:11	NA	common	16:11	PT_D9HXS4CK_7316-6085_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_EEDGYHE5	AFR	NA	0	0.9987	0.0013	0	0	52.674	-15.4767	-0.4731	1.9901	1.5436	PT_11DZQ3HH	Normal	C2864670	BS_ADVAQ07T	7316-7097	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2162	1042	LIVING	907	Progressive	NA	NA	Low-grade glioma	2.85284052019165	2.483230663928816	EVENT	non-EUR	LGG, BRAF fusion	5.919233401779603	16:9	NA	common	16:9	PT_11DZQ3HH_7316-7097_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_NV6N61QE	EUR	NA	0	0	0.0668	0	0.9332	2.393	9.5461	3.3668	9.1999	3.2043	PT_49KEX2FK	Normal	C3600948	BS_44NW0PQA	7316-8066	Female	Reported Unknown	Not Available	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1088	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	2.9787816563997263	16:9	NA	common	16:9	PT_49KEX2FK_7316-8066_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_4ZFQH6TK	EUR	NA	0	0	0.064	0	0.936	1.6055	10.1822	3.5074	8.6137	1.2658	PT_AYV78KT9	Normal	C3622227	BS_MQH4G1NZ	7316-8836	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1477	633	LIVING	633	Not Applicable	NA	NA	Low-grade glioma	1.73305954825462	1.73305954825462	NO EVENT	EUR	LGG, BRAF fusion	4.043805612594114	16:9	NA	common	16:9	PT_AYV78KT9_7316-8836_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_Y0YTZVXW	AMR	NA	0	0.0017	0.9983	0	0	-4.5138	-18.5643	21.5727	-27.317	2.2263	PT_2HWA1TA9	Normal	C3530469	BS_5GGBWXAQ	7316-8126	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Biopsy only	343	691	LIVING	691	Not Applicable	419	NA	Low-grade glioma	1.891854893908282	1.891854893908282	NO EVENT	non-EUR	LGG, BRAF fusion	0.9390828199863108	16:11	NA	common	16:11	PT_2HWA1TA9_7316-8126_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_ZD93F802	EUR	NA	0	0	0.058	0	0.942	-0.3351	10.895	4.7109	7.9368	3.5041	PT_W5Z2VB5Z	Normal	C3418785	BS_BF9N8YYP	7316-7932	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	3012	203	LIVING	203	Not Applicable	NA	NA	Low-grade glioma	0.5557837097878165	0.5557837097878165	NO EVENT	EUR	LGG, BRAF fusion	8.24640657084189	16:11	NA	common	16:11	PT_W5Z2VB5Z_7316-7932_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_ATNER2VJ	AFR	NA	0	0.9844	0.0156	0	0	43.5685	-8.3457	1.3852	2.2233	1.4681	PT_XPDTCGRR	Normal	C2613381	BS_JPMH9EXY	7316-6447	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3324	745	LIVING	745	Not Applicable	NA	NA	Low-grade glioma	2.039698836413415	2.039698836413415	NO EVENT	non-EUR	LGG, BRAF fusion	9.100616016427104	16:9	NA	common	16:9	PT_XPDTCGRR_7316-6447_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_N1JWVE7X	EUR	NA	0	0	0.0521	0	0.9479	1.5939	9.8133	6.2032	9.2167	3.0665	PT_J4AD2XSC	Normal	C2466519	BS_VJY45WV4	7316-6032	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4107	1838	LIVING	1838	Not Applicable	NA	NA	Low-grade glioma	5.032169746748802	5.032169746748802	NO EVENT	EUR	LGG, BRAF fusion	11.24435318275154	16:9	NA	common	16:9	PT_J4AD2XSC_7316-6032_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_PTDHV486	EUR	NA	0	0	0.0507	0	0.9493	1.4244	11.9892	3.1288	8.0673	1.1106	PT_MFNW2QEB	Normal	C3860355	BS_P3966C69	7316-9448	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3886	101	LIVING	101	Not Applicable	NA	NA	Low-grade glioma	0.27652292950034224	0.27652292950034224	NO EVENT	EUR	LGG, BRAF fusion	10.639288158795344	16:9	NA	common	16:9	PT_MFNW2QEB_7316-9448_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_RSKCJ76G	AMR	NA	0	0.0139	0.9861	0	0	0.6601	-12.593	11.4437	-13.6531	0.7338	PT_X4PV4FBS	Normal	C3879666	BS_J6B8ARCR	7316-9445	Female	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4352	90	LIVING	90	Not Applicable	NA	NA	Low-grade glioma	0.2464065708418891	0.2464065708418891	NO EVENT	non-EUR	LGG, BRAF fusion	11.915126625598903	15:9	NA	common	15:9	PT_X4PV4FBS_7316-9445_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_E6RNM5W6	EUR	NA	0	0	0.0421	0	0.9579	-0.2454	12.322	4.3818	7.9535	1.4278	PT_GNW76F1X	Normal	C3840798	BS_WMFWMMT4	7316-8913	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1918	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	5.25119780971937	16:9	NA	common	16:9	PT_GNW76F1X_7316-8913_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_95DYPQ58	EUR	NA	0	0	0.0818	0	0.9182	5.0095	9.6148	4.0479	8.6861	0.1193	PT_HXV713W6	Normal	C3940920	BS_M500BT9F	7316-9439	Female	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1595	125	LIVING	125	Recurrence	NA	NA	Low-grade glioma	0.34223134839151265	0.34223134839151265	EVENT	EUR	LGG, BRAF fusion	4.3668720054757015	16:9	NA	common	16:9	PT_HXV713W6_7316-9439_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_N8JBPRBT	AFR	NA	0	0.9733	0.0267	0	0	41.1052	-6.2783	2.2474	5.4312	4.3488	PT_64JHC2BH	Normal	C3686556	BS_SJDYHTR2	7316-8869	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1473	693	LIVING	693	Not Applicable	NA	NA	Low-grade glioma	1.897330595482546	1.897330595482546	NO EVENT	non-EUR	LGG, BRAF fusion	4.032854209445585	15:9	NA	common	15:9	PT_64JHC2BH_7316-8869_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_TC39FQAH	AMR	NA	0	0.0023	0.9977	0	0	1.3552	-3.1787	13.0393	-7.5125	3.5417	PT_7TVR7AJ2	Normal	C3823455	BS_QTYXH2T2	7316-8968	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2188	527	LIVING	527	Not Applicable	NA	NA	Low-grade glioma	1.4428473648186173	1.4428473648186173	NO EVENT	non-EUR	LGG, BRAF fusion	5.990417522245037	16:9	NA	common	16:9	PT_7TVR7AJ2_7316-8968_Solid Tissue_Initial CNS Tumor	NA	AMR
-BS_SS11WGW2	EUR	NA	0	0	0.0461	0	0.9539	3.9947	12.3744	4.8532	9.2498	2.2277	PT_N8VZWF99	Normal	C3686925	BS_SJ8T591F	7316-8865	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3763	222	LIVING	222	Not Applicable	NA	NA	Low-grade glioma	0.6078028747433265	0.6078028747433265	NO EVENT	EUR	LGG, BRAF fusion	10.302532511978097	16:9	NA	common	16:9	PT_N8VZWF99_7316-8865_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_19SJ6HYZ	EUR	NA	0	0	0.0419	0	0.9581	0.2367	13.0943	5.1825	6.8273	2.7143	PT_08M919BH	Normal	C2409078	BS_NHZST6RQ	7316-5334	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	4232	1351	LIVING	1351	Not Applicable	4269	NA	Low-grade glioma	3.698836413415469	3.698836413415469	NO EVENT	EUR	LGG, BRAF fusion	11.586584531143052	15:9	NA	common	15:9	PT_08M919BH_7316-5334_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_SH0T81B2	AFR	NA	0	0.5195	0.4805	0	0	25.7352	-0.4007	1.9806	6.3458	2.379	PT_EQ0BRG88	Normal	C2688165	BS_712XDVET	7316-6663	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2277	1065	LIVING	1065	Not Applicable	NA	NA	Low-grade glioma	2.915811088295688	2.915811088295688	NO EVENT	non-EUR	LGG, BRAF fusion	6.234086242299795	16:9	NA	common	16:9	PT_EQ0BRG88_7316-6663_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_N6SZ2ZQS	EUR	NA	0	0	0.3448	0	0.6551	0.0628	5.9011	6.2649	3.1644	2.3542	PT_FVHNJ901	Normal	C4049160	BS_BEMRGZ51	7316-9816	Female	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	2691	133	LIVING	133	Not Applicable	2733	NA	Low-grade glioma	0.36413415468856947	0.36413415468856947	NO EVENT	EUR	LGG, BRAF fusion	7.367556468172484	NA	16:10	rare	rare	PT_FVHNJ901_7316-9816_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_G6EZ5P9H	EUR	NA	0	0	0.0413	0	0.9587	1.2376	13.0849	3.8581	8.7122	3.429	PT_Z9BN2V4W	Normal	C2760858	BS_39P851A7	7316-6778	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2077	727	LIVING	727	Not Applicable	NA	NA	Low-grade glioma	1.9904175222450375	1.9904175222450375	NO EVENT	EUR	LGG, BRAF fusion	5.686516084873374	16:9	NA	common	16:9	PT_Z9BN2V4W_7316-6778_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_KMEHFVFN	AFR	NA	0	0.9707	0.0293	0	0	41.2985	-6.0534	1.1524	4.8697	1.8593	PT_GAKHC0Y2	Normal	C2795544	BS_5FHTNJCD	7316-7063	Male	Black or African American	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1372	587	LIVING	587	Not Applicable	NA	NA	Low-grade glioma	1.6071184120465434	1.6071184120465434	NO EVENT	non-EUR	LGG, BRAF fusion	3.756331279945243	16:9	NA	common	16:9	PT_GAKHC0Y2_7316-7063_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_VPB66VG0	EUR	NA	0	0	0.0841	0	0.9159	2.9486	8.4443	3.5609	8.823	1.5949	PT_DZ86YXN6	Normal	C1152633	BS_68DE0RFA	7316-4677	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Gross/Near total resection	1805	291	LIVING	291	Not Applicable	NA	NA	Low-grade glioma	0.7967145790554415	0.7967145790554415	NO EVENT	EUR	LGG, BRAF fusion	4.941820670773443	16:9	NA	common	16:9	PT_DZ86YXN6_7316-4677_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_H5210PS1	AFR	NA	0	0.9977	0.0023	0	0	52.1151	-12.0302	1.7992	0.9303	1.9131	PT_XB59JD00	Normal	C4021854	BS_RRWF6GD6	7316-9801	Male	Black or African American	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5274	400	LIVING	400	Not Applicable	NA	NA	Low-grade glioma	1.0951403148528405	1.0951403148528405	NO EVENT	non-EUR	LGG, BRAF fusion	14.439425051334702	16:9	NA	common	16:9	PT_XB59JD00_7316-9801_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_QD1S5JDX	EUR	NA	0	0	0.06	0	0.94	1.3157	11.9444	4.3753	6.7489	2.1558	PT_NHX9RARA	Normal	C3980034	BS_1QRW0M8X	7316-9739	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	6559	357	LIVING	166	Progressive	6592	NA	Low-grade glioma	0.9774127310061602	0.4544832306639288	EVENT	EUR	LGG, BRAF fusion	17.95756331279945	16:9	NA	common	16:9	PT_NHX9RARA_7316-9739_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_H5YW42AY	EUR	NA	0	0	0.0476	0	0.9524	1.7433	11.8455	3.7752	8.6649	0.9143	PT_YDFPMXAR	Normal	C1277724	BS_4QMRRWCX	7316-5152	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	4763	1648	LIVING	332	Progressive	5130	NA	Low-grade glioma	4.511978097193703	0.9089664613278576	EVENT	EUR	LGG, BRAF fusion	13.040383299110198	16:9	NA	common	16:9	PT_YDFPMXAR_7316-5152_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_0TEYTQJY	EUR	NA	0	0	0.0382	0	0.9618	0.9196	12.7578	4.317	8.3124	1.1758	PT_6R95FQT2	Normal	C98031	BS_YXCVR90M	7316-459	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	5262	3323	LIVING	3323	Not Applicable	NA	NA	Low-grade glioma	9.097878165639973	9.097878165639973	NO EVENT	EUR	LGG, BRAF fusion	14.406570841889115	18:10	NA	common	18:10	PT_6R95FQT2_7316-459_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_0X88TX85	EUR	NA	0	0	0.0381	0	0.9619	1.0723	11.2818	4.085	9.917	1.3368	PT_4Z34K4XB	Normal	C142188	BS_P36C0ABE	7316-733	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3509	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	9.607118412046544	15:9	NA	common	15:9	PT_4Z34K4XB_7316-733_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_14G6WY88	AFR	NA	0	0.9996	4e-4	0	0	59.0821	-15.2389	0.0859	2.7001	3.351	PT_YKVK5HTK	Normal	C90528	BS_3QDRWJCF	7316-441	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2211	3264	LIVING	3264	Not Applicable	NA	NA	Low-grade glioma	8.936344969199178	8.936344969199178	NO EVENT	non-EUR	LGG, BRAF fusion	6.053388090349076	16:11	NA	common	16:11	PT_YKVK5HTK_7316-441_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_1GEXQEBZ	EUR	NA	0	0	0.1402	0	0.8598	0.809	8.2603	4.9216	4.7235	2.2696	PT_S2CXXZCF	Normal	C250551	BS_KVV3G6NP	7316-643	Male	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1373	1835	LIVING	1835	Not Applicable	NA	NA	Low-grade glioma	5.023956194387406	5.023956194387406	NO EVENT	EUR	LGG, BRAF fusion	3.759069130732375	16:9	NA	common	16:9	PT_S2CXXZCF_7316-643_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_1GMX5YEM	EUR	NA	0	0	0.0454	0	0.9546	1.6925	11.274	5.8787	8.7371	-0.0234	PT_GCKT4FJX	Normal	C972684	BS_2HNHCSNB	7316-3919	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3242	374	LIVING	374	Not Applicable	NA	NA	Low-grade glioma	1.0239561943874058	1.0239561943874058	NO EVENT	EUR	LGG, BRAF fusion	8.876112251882272	16:9	NA	common	16:9	PT_GCKT4FJX_7316-3919_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_1KT7DF0G	AFR	NA	0	0.5783	0.4216	0	0	24.5046	-2.216	-1.3118	5.4841	2.2348	PT_ZR8MQRVG	Normal	C72693	BS_MT5ZSRG4	7316-346	Female	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	3578	3093	LIVING	1344	Progressive - Metastatic	3614	NA	Low-grade glioma	8.46817248459959	3.679671457905544	EVENT	non-EUR	LGG, BRAF fusion	9.796030116358658	16:9	NA	common	16:9	PT_ZR8MQRVG_7316-346_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_2K76WTCZ	EUR	NA	0	0	0.0493	0	0.9507	2.6653	12.8861	4.3608	7.2881	2.3237	PT_5GQ76YZJ	Normal	C37638	BS_WXKCR17Q	7316-168	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1933	1100	LIVING	1100	Not Applicable	NA	NA	Low-grade glioma	3.0116358658453115	3.0116358658453115	NO EVENT	EUR	LGG, BRAF fusion	5.292265571526352	16:9	NA	common	16:9	PT_5GQ76YZJ_7316-168_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_2QRTD3RQ	EAS	NA	1	0	0	0	0	-6.2017	-41.7047	1.0069	7.8539	3.279	PT_X1PRY0FC	Normal	C401964	BS_E2RXQ3JW	7316-1779	Male	Asian	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Biopsy only	736	2737	LIVING	1682	Progressive	759	NA	Low-grade glioma	7.493497604380561	4.605065023956194	EVENT	non-EUR	LGG, BRAF fusion	2.0150581793292264	15:9	NA	common	15:9	PT_X1PRY0FC_7316-1779_Solid Tissue_Initial CNS Tumor	PA_MID	AS
-BS_2V4BP5Q9	AFR	NA	0	0.9944	0.0056	0	0	47.227	-9.8111	0.0428	3.1585	3.0335	PT_KQK98ZVP	Normal	C479085	BS_YMDPFK0V	7316-1803	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	1119	1886	LIVING	1886	Not Applicable	1168	NA	Low-grade glioma	5.163586584531143	5.163586584531143	NO EVENT	non-EUR	LGG, BRAF fusion	3.0636550308008212	16:9	NA	common	16:9	PT_KQK98ZVP_7316-1803_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_3C702XH4	EUR	NA	0	0	0.0586	0	0.9414	3.3858	11.384	5.7927	7.3719	0.4809	PT_GQZ84ACS	Normal	C114759	BS_3ZMH8578	7316-487	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	553	3420	LIVING	1635	Progressive	577	NA	Low-grade glioma	9.363449691991786	4.476386036960986	EVENT	EUR	LGG, BRAF fusion	1.514031485284052	NA	15:11	rare	rare	PT_GQZ84ACS_7316-487_Solid Tissue_Initial CNS Tumor	PA_MID	EUR
-BS_3E3VYSXT	EUR	NA	0	0	0.0629	0	0.9371	1.977	8.4308	5.5248	9.3656	1.6721	PT_BDNE55YT	Normal	C226689	BS_Y43VC4VG	7316-1710	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	1472	2308	LIVING	35	Progressive	NA	NA	Low-grade glioma	6.31895961670089	0.09582477754962354	EVENT	EUR	LGG, BRAF fusion	4.030116358658453	15:9	NA	common	15:9	PT_BDNE55YT_7316-1710_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_45VHDFRD	EUR	NA	0	0	0.0254	0	0.9746	-0.2466	11.6102	4.9831	10.8162	1.3274	PT_TB8HPJBN	Normal	C699624	BS_G2016BE5	7316-2663	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1436	1893	LIVING	1893	Not Applicable	NA	NA	Low-grade glioma	5.1827515400410675	5.1827515400410675	NO EVENT	EUR	LGG, BRAF fusion	3.9315537303216974	16:9	NA	common	16:9	PT_TB8HPJBN_7316-2663_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_4JPDCXVR	EUR	NA	0	0	0.0374	0	0.9626	0.1509	12.8819	5.1461	8.5166	2.7107	PT_SDK91A16	Normal	C27675	BS_47454JJ6	7316-247	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	5017	2172	LIVING	2172	Not Applicable	5047	NA	Low-grade glioma	5.946611909650924	5.946611909650924	NO EVENT	EUR	LGG, BRAF fusion	13.735797399041752	18:10	NA	common	18:10	PT_SDK91A16_7316-247_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_4RT8H37A	EUR	NA	0	0	0.093	0	0.907	1.1367	9.4703	4.9054	7.025	2.7924	PT_SMDEQVHJ	Normal	C29151	BS_XSWF2MR1	7316-119	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	649	1156	LIVING	1156	Not Applicable	NA	NA	Low-grade glioma	3.164955509924709	3.164955509924709	NO EVENT	EUR	LGG, BRAF fusion	1.7768651608487338	16:9	NA	common	16:9	PT_SMDEQVHJ_7316-119_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_4RV40GPD	EUR	NA	0	0	0.0473	0	0.9527	1.5719	12.1118	6.4013	7.5315	1.7742	PT_CK41DW03	Normal	C22140	BS_3AERRZQT	7316-329	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4344	2491	LIVING	270	Progressive	NA	4656	Low-grade glioma	6.8199863107460645	0.7392197125256673	EVENT	EUR	LGG, BRAF fusion	11.893223819301848	15:9	NA	common	15:9	PT_CK41DW03_7316-329_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_51ZADQ6R	EUR	NA	0	0	0.0791	0	0.9209	3.5464	9.4018	2.148	9.0263	1.2796	PT_DMHFS0HX	Normal	C808110	BS_GCQEB05M	7316-3055	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3765	1368	LIVING	1368	Not Applicable	NA	NA	Low-grade glioma	3.7453798767967146	3.7453798767967146	NO EVENT	EUR	LGG, BRAF fusion	10.30800821355236	16:9	NA	common	16:9	PT_DMHFS0HX_7316-3055_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_5WZE7TYQ	EUR	NA	0	0	0.037	0	0.963	0.0357	12.7461	4.1339	8.1004	0.8809	PT_ZD9AYB6F	Normal	C874161	BS_245CTSH9	7316-3323	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1850	1666	LIVING	1666	Not Applicable	NA	NA	Low-grade glioma	4.561259411362081	4.561259411362081	NO EVENT	EUR	LGG, BRAF fusion	5.065023956194388	16:9	NA	common	16:9	PT_ZD9AYB6F_7316-3323_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_6M3B3TKJ	EUR	NA	0	0	0.0338	0	0.9662	1.0431	13.4146	4.9324	8.3169	1.9236	PT_8XZY6MM1	Normal	C187083	BS_WB8P21ED	7316-957	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2810	280	LIVING	280	Not Applicable	NA	NA	Low-grade glioma	0.7665982203969883	0.7665982203969883	NO EVENT	EUR	LGG, BRAF fusion	7.693360711841205	16:9	NA	common	16:9	PT_8XZY6MM1_7316-957_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_6QF29TRA	EUR	NA	0	0	0.0513	0	0.9487	2.6501	12.5676	4.0362	7.9871	2.759	PT_WYF217NZ	Normal	C72324	BS_RZNNEX1Y	7316-345	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2478	1138	LIVING	1138	Not Applicable	NA	NA	Low-grade glioma	3.1156741957563314	3.1156741957563314	NO EVENT	EUR	LGG, BRAF fusion	6.784394250513347	16:9	NA	common	16:9	PT_WYF217NZ_7316-345_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_7FHJGTZG	EUR	NA	0	0	0.0415	0	0.9585	-0.295	12.2957	6.4065	7.1406	1.2236	PT_C1M4YF1R	Normal	C46617	BS_K6BMXTW5	7316-127	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2857	3483	LIVING	3483	Not Applicable	NA	NA	Low-grade glioma	9.535934291581109	9.535934291581109	NO EVENT	EUR	LGG, BRAF fusion	7.822039698836414	18:10	NA	common	18:10	PT_C1M4YF1R_7316-127_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_8DTDM1MK	EUR	NA	0	0	0.0556	0	0.9444	0.1609	10.844	4.2706	8.2706	1.8081	PT_409Y4N1N	Normal	C28659	BS_HW4MYBZ2	7316-84	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4334	968	LIVING	968	Not Applicable	NA	NA	Low-grade glioma	2.650239561943874	2.650239561943874	NO EVENT	EUR	LGG, BRAF fusion	11.865845311430528	15:9	NA	common	15:9	PT_409Y4N1N_7316-84_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_8PRJTBE1	EUR	NA	0	0	0.0313	0	0.9687	-1.8115	10.9087	4.7626	9.4568	2.0878	PT_1KEER2Q1	Normal	C98154	BS_F1B71HTZ	7316-460	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3826	3344	LIVING	3344	Not Applicable	NA	NA	Low-grade glioma	9.155373032169749	9.155373032169749	NO EVENT	EUR	LGG, BRAF fusion	10.47501711156742	16:9	NA	common	16:9	PT_1KEER2Q1_7316-460_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_98RN7Y9D	AMR	NA	0	0.0112	0.9888	0	0	6.725	-4.9364	10.7441	-5.049	2.1152	PT_ZVV78QP5	Normal	C29397	BS_2RJN5Z4W	7316-117	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3354	1145	LIVING	1145	Not Applicable	NA	NA	Low-grade glioma	3.134839151266256	3.134839151266256	NO EVENT	non-EUR	LGG, BRAF fusion	9.182751540041068	16:9	NA	common	16:9	PT_ZVV78QP5_7316-117_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_9GHGSRGG	AFR	NA	0	0.9975	0.0025	0	0	49.6854	-14.2246	-0.0569	1.5884	1.9504	PT_6TKJRSPW	Normal	C35670	BS_WRJNMEX2	7316-162	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	6286	379	LIVING	379	Not Applicable	NA	NA	Low-grade glioma	1.0376454483230664	1.0376454483230664	NO EVENT	non-EUR	LGG, BRAF fusion	17.21013004791239	NA	14:8	rare	rare	PT_6TKJRSPW_7316-162_Solid Tissue_Initial CNS Tumor	NA	AFR
-BS_9S3N3Y5W	AFR	NA	0	0.6613	0.3387	0	0	27.2673	-2.5525	0.7035	3.6362	1.5742	PT_N9CGVG02	Normal	C551532	BS_ABENB1H2	7316-2197	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Mixed	Gross/Near total resection	4114	2389	LIVING	2389	Not Applicable	4132	NA	Low-grade glioma	6.54072553045859	6.54072553045859	NO EVENT	non-EUR	LGG, BRAF fusion	11.263518138261464	16:11	NA	common	16:11	PT_N9CGVG02_7316-2197_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_ASJMZMN6	AFR	NA	0	0.9653	0.0347	0	0	38.7009	-8.813	1.7644	1.7081	1.9075	PT_JXGMAHHN	Normal	C136530	BS_MWKJF6XH	7316-874	Female	Black or African American	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	796	3279	LIVING	548	Progressive - Metastatic	810	NA	Low-grade glioma	8.97741273100616	1.5003422313483916	EVENT	non-EUR	LGG, BRAF fusion	2.1793292265571527	16:9	NA	common	16:9	PT_JXGMAHHN_7316-874_Solid Tissue_Initial CNS Tumor	PA_MID	AFR
-BS_AZG06JFG	EUR	NA	0	0	0.0875	0	0.9125	2.0026	10.1577	3.9353	6.5803	0.7698	PT_3RN24N9X	Normal	C22509	BS_VW96PFKQ	7316-20	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1469	3736	LIVING	3736	Not Applicable	NA	NA	Low-grade glioma	10.22861054072553	10.22861054072553	NO EVENT	EUR	LGG, BRAF fusion	4.0219028062970565	16:9	NA	common	16:9	PT_3RN24N9X_7316-20_Solid Tissue_Initial CNS Tumor	PA_INF_FGFR	EUR
-BS_BXTHPE56	EUR	NA	0	0	0.0932	0	0.9068	2.0179	9.5255	1.106	6.7904	3.1832	PT_A9F8Y6MA	Normal	C111930	BS_ZKZACPVV	7316-476	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Biopsy only	199	NA	NA	NA	Progressive - Metastatic	222	NA	Low-grade glioma	NA	NA	EVENT	EUR	LGG, BRAF fusion	0.5448323066392882	15:9	NA	common	15:9	PT_A9F8Y6MA_7316-476_Solid Tissue_Initial CNS Tumor	PA_MID	EUR
-BS_CBVA073E	EUR	NA	0	0	0.0576	0	0.9424	1.1969	10.7846	4.291	8.4884	2.1323	PT_TS0FW57Z	Normal	C580068	BS_Q0XBZP88	7316-2167	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5766	1545	LIVING	1545	Not Applicable	NA	NA	Low-grade glioma	4.229979466119096	4.229979466119096	NO EVENT	EUR	LGG, BRAF fusion	15.786447638603695	16:9	NA	common	16:9	PT_TS0FW57Z_7316-2167_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_CJFTT8ZC	EUR	NA	0	0	0.0457	0	0.9543	2.7041	11.2259	4.7737	9.5922	2.535	PT_CGPJY881	Normal	C230871	BS_XKP747AS	7316-891	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5213	770	LIVING	770	Not Applicable	NA	NA	Low-grade glioma	2.108145106091718	2.108145106091718	NO EVENT	EUR	LGG, BRAF fusion	14.272416153319645	16:9	NA	common	16:9	PT_CGPJY881_7316-891_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_D9FXAR11	EUR	NA	0	0	0.0471	0	0.9529	0.5254	12.0699	4.5201	8.2602	2.2055	PT_6MWPJ96F	Normal	C226566	BS_6GV08HTE	7316-1711	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2889	2420	LIVING	2420	Not Applicable	NA	NA	Low-grade glioma	6.625598904859685	6.625598904859685	NO EVENT	EUR	LGG, BRAF fusion	7.909650924024641	16:9	NA	common	16:9	PT_6MWPJ96F_7316-1711_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_DJ7XB1DM	EUR	NA	0	0	0.0665	0	0.9335	1.2428	10.1674	4.6862	8.1771	2.6536	PT_9B6KWJT2	Normal	C155472	BS_VQC2PE2B	7316-1226	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4947	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	13.544147843942506	16:11	NA	common	16:11	PT_9B6KWJT2_7316-1226_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_DMD12ZRF	EUR	NA	0	0	0.0466	0	0.9534	2.019	11.789	4.842	9.0002	2.9802	PT_0EWY6S6S	Normal	C1041441	BS_GAA327FP	7316-3491	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3999	1322	LIVING	1322	Not Applicable	NA	NA	Low-grade glioma	3.619438740588638	3.619438740588638	NO EVENT	EUR	LGG, BRAF fusion	10.948665297741274	15:9	NA	common	15:9	PT_0EWY6S6S_7316-3491_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_EK6AB5ZC	EUR	NA	0	0	0.0449	0	0.9551	0.2165	12.0961	4.9989	8.4334	3.3793	PT_EW604JB3	Normal	C149322	BS_N8D9FH6M	7316-1134	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1244	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	3.405886379192334	15:9	NA	common	15:9	PT_EW604JB3_7316-1134_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_F8Y7NRK8	EUR	NA	0	0	0.0645	0	0.9355	0.5825	10.5381	2.0661	8.4467	1.914	PT_5P3XJ97K	Normal	C90405	BS_RB8VSEVG	7316-390	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4667	1800	LIVING	1800	Not Applicable	NA	NA	Low-grade glioma	4.9281314168377826	4.9281314168377826	NO EVENT	EUR	LGG, BRAF fusion	12.777549623545516	16:9	NA	common	16:9	PT_5P3XJ97K_7316-390_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_FBZQ4DXA	AFR	NA	0	0.6055	0.3945	0	0	27.0334	-1.26	3.1211	5.6259	3.6672	PT_AC5SD9AC	Normal	C522996	BS_VPJ9CARN	7316-2291	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1598	3227	LIVING	562	Progressive	1620	NA	Low-grade glioma	8.83504449007529	1.538672142368241	EVENT	non-EUR	LGG, BRAF fusion	4.375085557837098	16:9	NA	common	16:9	PT_AC5SD9AC_7316-2291_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_FQ58DAZV	EUR	NA	0	0	0.0432	0	0.9568	0.1848	12.9102	5.7824	7.7689	4.1821	PT_C2VY5NM6	Normal	C155103	BS_N0Z6V2YG	7316-875	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Partial resection	735	2883	LIVING	2883	Not Applicable	NA	NA	Low-grade glioma	7.893223819301848	7.893223819301848	NO EVENT	EUR	LGG, BRAF fusion	2.0123203285420943	NA	10:9	rare	rare	PT_C2VY5NM6_7316-875_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_GGNKMKW9	AMR	NA	0	0.0337	0.9663	0	0	12.6023	-6.3588	8.7571	-5.8444	3.1268	PT_EZEMVRVT	Normal	C965673	BS_32HAVF6S	7316-3154	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Gross/Near total resection	1171	1792	LIVING	1792	Not Applicable	NA	NA	Low-grade glioma	4.906228610540725	4.906228610540725	NO EVENT	non-EUR	LGG, BRAF fusion	3.2060232717316905	16:9	NA	common	16:9	PT_EZEMVRVT_7316-3154_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_GMJP7PN2	AMR	NA	0	0.0087	0.9732	1e-4	0.0179	15.0326	4.2572	2.1828	7.0632	0.2959	PT_9C2G356W	Normal	C883632	BS_1VMBA3BN	7316-3555	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1982	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	5.426420260095825	16:9	NA	common	16:9	PT_9C2G356W_7316-3555_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_GNH80DDG	EUR	NA	0	1e-4	0.0823	0.0071	0.9106	5.2321	6.1274	-3.0005	5.2367	1.5494	PT_BK92NM09	Normal	C717336	BS_XVYRXN8J	7316-2669	Female	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1357	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	3.7152635181382614	16:9	NA	common	16:9	PT_BK92NM09_7316-2669_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_HGPJ76NM	EUR	NA	0	0	0.0556	0	0.9444	3.0829	11.8785	3.9437	7.6232	0.719	PT_XSS1ANXD	Normal	C121524	BS_FQ2ZBMPA	7316-495	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1391	1974	LIVING	1974	Not Applicable	NA	NA	Low-grade glioma	5.404517453798768	5.404517453798768	NO EVENT	EUR	LGG, BRAF fusion	3.808350444900753	16:9	NA	common	16:9	PT_XSS1ANXD_7316-495_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_HM2ZG2J7	EUR	NA	0	0	0.045	0	0.955	1.5012	11.139	4.6634	9.3703	2.4465	PT_PFA762TK	Normal	C75276	BS_XHAQXDR0	7316-368	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	796	2931	LIVING	222	Recurrence	NA	NA	Low-grade glioma	8.02464065708419	0.6078028747433265	EVENT	EUR	LGG, BRAF fusion	2.1793292265571527	16:9	NA	common	16:9	PT_PFA762TK_7316-368_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_HMWZ2893	EUR	NA	0	0	0.0357	0	0.9643	2.2387	11.387	5.0681	10.3626	2.9185	PT_4TASAQKA	Normal	C916719	BS_AEMRNSQX	7316-3566	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	4382	1610	LIVING	1610	Not Applicable	NA	NA	Low-grade glioma	4.407939767282683	4.407939767282683	NO EVENT	EUR	LGG, BRAF fusion	11.997262149212869	16:9	NA	common	16:9	PT_4TASAQKA_7316-3566_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_HS2BZ6T2	EUR	NA	0	0	0.0607	0	0.9393	1.0001	11.388	5.4068	6.9503	1.7552	PT_MNR94DEV	Normal	C77367	BS_ZP89F1JY	7316-370	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3870	772	LIVING	772	Not Applicable	NA	NA	Low-grade glioma	2.113620807665982	2.113620807665982	NO EVENT	EUR	LGG, BRAF fusion	10.595482546201232	18:10	NA	common	18:10	PT_MNR94DEV_7316-370_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_HVCBQ58H	AMR	NA	0	0.0109	0.9891	0	0	0.6715	-10.2062	13.2929	-11.9895	2.5761	PT_EQ5C5TEA	Normal	C974898	BS_0S617SMM	7316-3922	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Mixed	Gross/Near total resection	4043	1982	LIVING	1066	Second Malignancy - Metastatic	4070	4070	Low-grade glioma	5.426420260095825	2.91854893908282	EVENT	non-EUR	LGG, BRAF fusion	11.069130732375086	18:10	NA	common	18:10	PT_EQ5C5TEA_7316-3922_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_JEPRW1KE	SAS	NA	0	0	0	1	0	-0.396	-2.9757	-9.9711	-2.8433	1.8746	PT_962TCBVR	Normal	C88683	BS_2CQ6K2JW	7316-391	Male	American Indian or Alaska Native	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	1359	2866	LIVING	358	Recurrence	NA	NA	Low-grade glioma	7.846680355920602	0.9801505817932924	EVENT	non-EUR	LGG, BRAF fusion	3.7207392197125255	16:9	NA	common	16:9	PT_962TCBVR_7316-391_Solid Tissue_Initial CNS Tumor	PA_INF	AS
-BS_JGTBRH16	EUR	NA	0	0	0.042	0	0.958	1.2334	11.9999	3.2744	8.9438	0.1524	PT_M5HDHQNQ	Normal	C102459	BS_GKN0B47F	7316-475	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1986	2708	LIVING	505	Progressive	2585	NA	Low-grade glioma	7.41409993155373	1.3826146475017111	EVENT	EUR	LGG, BRAF fusion	5.437371663244353	16:9	NA	common	16:9	PT_M5HDHQNQ_7316-475_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_JQB0CTE7	EUR	NA	0	0	0.1306	0	0.8694	2.2089	8.5639	2.5278	6.7735	1.6054	PT_0K0DPVF6	Normal	C59532	BS_Z4Q8RH5M	7316-121	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2480	2866	LIVING	799	Second Malignancy	NA	NA	Low-grade glioma	7.846680355920602	2.187542778918549	EVENT	EUR	LGG, BRAF fusion	6.789869952087611	16:9	NA	common	16:9	PT_0K0DPVF6_7316-121_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_K9NDFNWV	AMR	NA	0	0.0263	0.973	1e-4	6e-4	14.7444	1.2067	6.4303	0.9198	0.7738	PT_ATE3YRH5	Normal	C868872	BS_04B8X54S	7316-3308	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3106	1724	LIVING	1724	Not Applicable	NA	NA	Low-grade glioma	4.720054757015743	4.720054757015743	NO EVENT	non-EUR	LGG, BRAF fusion	8.503764544832306	16:9	NA	common	16:9	PT_ATE3YRH5_7316-3308_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_KA6B8TG8	EUR	NA	0	0	0.0677	0	0.9323	1.5266	10.9751	4.9975	7.1924	1.7255	PT_FKWCVXNC	Normal	C68634	BS_GDPZN3SD	7316-332	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1178	1523	LIVING	1523	Not Applicable	NA	NA	Low-grade glioma	4.16974674880219	4.16974674880219	NO EVENT	EUR	LGG, BRAF fusion	3.2251882272416155	16:9	NA	common	16:9	PT_FKWCVXNC_7316-332_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_KTKMBKXB	EUR	NA	0	0	0.0684	0	0.9316	0.7722	11.3573	1.5736	7.1444	2.378	PT_H57TEQDT	Normal	C647595	BS_CP435MAC	7316-2324	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1227	2245	LIVING	1245	Progressive	2739	NA	Low-grade glioma	6.146475017111568	3.4086242299794662	EVENT	EUR	LGG, BRAF fusion	3.359342915811088	16:9	NA	common	16:9	PT_H57TEQDT_7316-2324_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_KWQ8A6AJ	EUR	NA	0	0	0.0545	0	0.9455	1.1619	12.1344	3.7096	7.3077	1.9794	PT_E1TRJP8V	Normal	C46371	BS_SK949N33	7316-134	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2419	2596	LIVING	180	Progressive	NA	2627	Low-grade glioma	7.107460643394935	0.4928131416837782	EVENT	EUR	LGG, BRAF fusion	6.622861054072553	16:9	NA	common	16:9	PT_E1TRJP8V_7316-134_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_M5M3BPDH	EUR	NA	0	0	0.0464	0	0.9536	0.5017	12.105	6.4089	7.7019	2.5073	PT_6N1QWCXE	Normal	C1028403	BS_D2BZ25FW	7316-3169	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2869	1179	LIVING	1179	Not Applicable	NA	NA	Low-grade glioma	3.2279260780287475	3.2279260780287475	NO EVENT	EUR	LGG, BRAF fusion	7.854893908281999	16:11	NA	common	16:11	PT_6N1QWCXE_7316-3169_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_MTDQBCQK	EUR	NA	0	0	0.0621	0	0.9379	0.4607	10.5619	4.551	8.1264	3.8362	PT_YJBPEF4V	Normal	C311559	BS_PC2YQ4F6	7316-938	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	7149	783	LIVING	783	Not Applicable	NA	NA	Low-grade glioma	2.1437371663244353	2.1437371663244353	NO EVENT	EUR	LGG, BRAF fusion	19.57289527720739	16:9	NA	common	16:9	PT_YJBPEF4V_7316-938_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_NBM9CPE4	EUR	NA	0	0	0.0393	0	0.9607	1.8161	12.8902	4.3674	8.7285	2.0703	PT_SBHN5F68	Normal	C100491	BS_Q5XKTB1V	7316-516	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2539	1986	LIVING	1986	Not Applicable	NA	NA	Low-grade glioma	5.437371663244353	5.437371663244353	NO EVENT	EUR	LGG, BRAF fusion	6.951403148528406	18:10	NA	common	18:10	PT_SBHN5F68_7316-516_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_P52FTQNA	AFR	NA	0	0.9936	0.0064	0	0	48.2113	-10.9385	3.1765	4.2956	1.7048	PT_KXB1PJV0	Normal	C58179	BS_6Q9PMNWY	7316-206	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4216	739	LIVING	739	Not Applicable	NA	NA	Low-grade glioma	2.023271731690623	2.023271731690623	NO EVENT	non-EUR	LGG, BRAF fusion	11.542778918548938	15:9	NA	common	15:9	PT_KXB1PJV0_7316-206_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_PF7546KW	AMR	NA	0	0.007	0.9927	1e-4	2e-4	11.7519	-0.3374	7.0963	-1.2231	1.9778	PT_J0SZ1SX5	Normal	C806019	BS_5NAKYS1S	7316-2589	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	210	2736	LIVING	351	Progressive	219	NA	Low-grade glioma	7.490759753593429	0.9609856262833676	EVENT	non-EUR	LGG, BRAF fusion	0.5749486652977412	15:9	NA	common	15:9	PT_J0SZ1SX5_7316-2589_Solid Tissue_Initial CNS Tumor	PA_MID	AMR
-BS_PSAZZC71	AMR	NA	2e-4	0.0354	0.9608	9e-4	0.0027	11.3626	1.0323	4.4392	2.0605	0.3034	PT_V07ZH5JS	Normal	C96186	BS_2F70R10Z	7316-472	Female	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	5399	1000	LIVING	1000	Not Applicable	5454	NA	Low-grade glioma	2.737850787132101	2.737850787132101	NO EVENT	non-EUR	LGG, BRAF fusion	14.781656399726216	16:9	NA	common	16:9	PT_V07ZH5JS_7316-472_Solid Tissue_Initial CNS Tumor	PA_MID	AMR
-BS_PT1DC3ZF	AMR	NA	0	6e-4	0.9994	0	0	-8.7667	-26.1093	21.8184	-35.1307	2.6722	PT_HV6C0T34	Normal	C818688	BS_16TBX6G5	7316-3062	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1612	391	LIVING	391	Not Applicable	NA	NA	Low-grade glioma	1.0704996577686516	1.0704996577686516	NO EVENT	non-EUR	LGG, BRAF fusion	4.413415468856948	15:9	NA	common	15:9	PT_HV6C0T34_7316-3062_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_Q2TEFDZ7	EUR	NA	0	0	0.0984	0	0.9016	0.0787	6.8871	5.129	7.7578	1.245	PT_YRMG61G8	Normal	C621396	BS_PV130A29	7316-2305	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2264	1360	LIVING	1360	Not Applicable	NA	NA	Low-grade glioma	3.7234770704996576	3.7234770704996576	NO EVENT	EUR	LGG, BRAF fusion	6.198494182067077	16:9	NA	common	16:9	PT_YRMG61G8_7316-2305_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_Q7NF95N0	EUR	NA	0	0	0.0866	0	0.9134	0.5925	10.6126	4.6188	6.4388	3.3171	PT_JYZA0PNV	Normal	C95571	BS_8W0FNBWF	7316-437	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	2321	NA	LIVING	NA	Not Applicable	2365	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	6.354551676933607	16:9	NA	common	16:9	PT_JYZA0PNV_7316-437_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_Q80JX5G6	EUR	NA	0	0	0.0377	0	0.9623	0.1725	11.6651	4.1524	9.5243	2.3111	PT_S0PBN4M7	Normal	C479700	BS_Q50P97Y0	7316-1805	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	392	2067	LIVING	316	Progressive	709	NA	Low-grade glioma	5.6591375770020536	0.865160848733744	EVENT	EUR	LGG, BRAF fusion	1.0732375085557837	16:9	NA	common	16:9	PT_S0PBN4M7_7316-1805_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_QYQNZDD8	EUR	NA	0	0	0.0556	0	0.9444	0.9017	11.1816	4.057	8.3544	1.851	PT_TPSMT960	Normal	C78966	BS_4M0ZMCDC	7316-400	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	637	1522	LIVING	1522	Not Applicable	NA	NA	Low-grade glioma	4.167008898015058	4.167008898015058	NO EVENT	EUR	LGG, BRAF fusion	1.7440109514031483	16:9	NA	common	16:9	PT_TPSMT960_7316-400_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_RG2CTN65	AFR	NA	0	0.9965	0.0035	0	0	49.4484	-13.0838	1.9204	1.8907	1.8186	PT_1BV6ND1D	Normal	C908601	BS_MZJJRDZF	7316-3203	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1453	1069	LIVING	1069	Not Applicable	NA	NA	Low-grade glioma	2.926762491444216	2.926762491444216	NO EVENT	non-EUR	LGG, BRAF fusion	3.978097193702943	16:9	NA	common	16:9	PT_1BV6ND1D_7316-3203_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_RVFDSK8D	AFR	NA	0	0.7193	0.2807	0	0	29.5296	-2.9664	3.3183	5.0698	2.5157	PT_5ABCFCSK	Normal	C115251	BS_APAQ2X2S	7316-1851	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	5804	1698	LIVING	626	Progressive	NA	6469	Low-grade glioma	4.648870636550308	1.7138945927446954	EVENT	non-EUR	LGG, BRAF fusion	15.890485968514716	16:9	NA	common	16:9	PT_5ABCFCSK_7316-1851_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_S8CT9Z7J	AMR	NA	0	0.0068	0.9932	0	0	0.0105	-8.4293	12.4092	-12.616	2.625	PT_5M8A47WW	Normal	C95448	BS_50XV7CTQ	7316-436	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Not Reported	603	2815	LIVING	2815	Not Applicable	NA	NA	Low-grade glioma	7.707049965776865	7.707049965776865	NO EVENT	non-EUR	LGG, BRAF fusion	1.6509240246406571	16:9	NA	common	16:9	PT_5M8A47WW_7316-436_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_SCCY3YMQ	AFR	NA	0	0.9984	0.0016	0	0	53.203	-12.8773	0.2516	0.5011	1.3453	PT_K30AWQ8A	Normal	C86100	BS_9GSWPZ44	7316-393	Female	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4087	1721	LIVING	1721	Not Applicable	NA	4171	Low-grade glioma	4.7118412046543465	4.7118412046543465	NO EVENT	non-EUR	LGG, BRAF fusion	11.189596167008895	15:9	NA	common	15:9	PT_K30AWQ8A_7316-393_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_SG7EPZ4W	EUR	NA	0	0	0.1821	0	0.8178	2.4566	7.7484	4.7149	4.6751	3.0933	PT_DW6V5V8E	Normal	C245631	BS_F4D169Q7	7316-924	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	1069	1612	LIVING	1612	Not Applicable	NA	NA	Low-grade glioma	4.413415468856948	4.413415468856948	NO EVENT	EUR	LGG, BRAF fusion	2.926762491444216	15:9	NA	common	15:9	PT_DW6V5V8E_7316-924_Solid Tissue_Initial CNS Tumor	PA_MID	EUR
-BS_SP886CE6	EUR	NA	0	0	0.0963	0	0.9037	4.5908	11.0106	2.5065	6.3307	1.7441	PT_27FDWCVZ	Normal	C41574	BS_D09VWF8H	7316-184	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3295	601	LIVING	601	Not Applicable	NA	NA	Low-grade glioma	1.6454483230663928	1.6454483230663928	NO EVENT	EUR	LGG, BRAF fusion	9.021218343600276	16:9	NA	common	16:9	PT_27FDWCVZ_7316-184_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_SWHT4TC3	EUR	NA	0	0	0.0662	0	0.9338	1.9483	12.4076	3.2526	6.3223	3.174	PT_6VJ5PNKS	Normal	C584865	BS_JJWC13GG	7316-2174	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3979	1874	LIVING	1874	Not Applicable	NA	NA	Low-grade glioma	5.130732375085558	5.130732375085558	NO EVENT	EUR	LGG, BRAF fusion	10.89390828199863	16:9	NA	common	16:9	PT_6VJ5PNKS_7316-2174_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_T5TB5NM7	EUR	NA	0	0	0.0769	0	0.9231	2.3066	9.4218	4.5118	8.269	1.8329	PT_RFF7MKTC	Normal	C182655	BS_PP4WJBNR	7316-954	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1818	2822	LIVING	2822	Not Applicable	NA	NA	Low-grade glioma	7.72621492128679	7.72621492128679	NO EVENT	EUR	LGG, BRAF fusion	4.97741273100616	16:11	NA	common	16:11	PT_RFF7MKTC_7316-954_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_TA48KCWF	EUR	NA	0	0	0.0376	0	0.9624	1.1834	10.3582	6.0587	10.1315	2.1281	PT_7TEHW6VQ	Normal	C744888	BS_KYPZRS4S	7316-2755	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3998	1854	LIVING	1854	Not Applicable	NA	NA	Low-grade glioma	5.075975359342916	5.075975359342916	NO EVENT	EUR	LGG, BRAF fusion	10.94592744695414	16:9	NA	common	16:9	PT_7TEHW6VQ_7316-2755_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_TGEBNSS2	AMR	NA	0	0.0048	0.9952	0	0	-1.0248	-8.7101	12.0544	-14.4883	1.8591	PT_5VAKED5F	Normal	C736647	BS_7M5272WN	7316-2689	Male	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	1607	665	LIVING	665	Not Applicable	NA	NA	Low-grade glioma	1.8206707734428471	1.8206707734428471	NO EVENT	non-EUR	LGG, BRAF fusion	4.399726214921286	16:11	NA	common	16:11	PT_5VAKED5F_7316-2689_Solid Tissue_Initial CNS Tumor	PA_INF	AMR
-BS_TYCE05MW	EUR	NA	0	0	0.0543	0	0.9457	1.2203	11.372	5.9793	7.8621	1.8104	PT_6E8JYRXM	Normal	C736401	BS_3R0KN6Z4	7316-2729	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	996	1868	LIVING	1868	Not Applicable	NA	NA	Low-grade glioma	5.114305270362765	5.114305270362765	NO EVENT	EUR	LGG, BRAF fusion	2.726899383983573	15:9	NA	common	15:9	PT_6E8JYRXM_7316-2729_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_V8GEAEZJ	EUR	NA	0	0	0.0598	0	0.9402	0.4041	10.5048	5.3864	8.0204	2.5533	PT_YGN06RPZ	Normal	C521274	BS_3C4YAMKJ	7316-2204	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Biopsy only	1383	3203	LIVING	1118	Progressive - Metastatic	1400	NA	Low-grade glioma	8.76933607118412	3.060917180013689	EVENT	EUR	LGG, BRAF fusion	3.786447638603696	16:11	NA	common	16:11	PT_YGN06RPZ_7316-2204_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_VP4WNVZG	EUR	NA	0	0	0.4605	0	0.5395	-0.6682	5.4983	7.6088	1.737	1.5916	PT_VJ0M4E8Y	Normal	C581913	BS_FFD25TTK	7316-2099	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2154	1700	LIVING	1700	Not Applicable	NA	NA	Low-grade glioma	4.654346338124572	4.654346338124572	NO EVENT	EUR	LGG, BRAF fusion	5.897330595482546	16:9	NA	common	16:9	PT_VJ0M4E8Y_7316-2099_Solid Tissue_Initial CNS Tumor	NA	EUR
-BS_WYX72YAC	EUR	NA	0	0	0.0398	0	0.9602	0.9461	10.9107	4.5311	9.8332	1.8282	PT_1J2DT6MM	Normal	C623856	BS_THH0CE5A	7316-2184	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3602	1959	LIVING	1959	Not Applicable	NA	NA	Low-grade glioma	5.363449691991787	5.363449691991787	NO EVENT	EUR	LGG, BRAF fusion	9.86173853524983	16:9	NA	common	16:9	PT_1J2DT6MM_7316-2184_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_X5H2K1XG	EUR	NA	0	0	0.0591	0	0.9409	1.9474	9.9705	5.0581	8.9344	2.7928	PT_K63972GG	Normal	C403317	BS_EQE19CB0	7316-666	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	5769	2337	LIVING	1855	Progressive	NA	NA	Low-grade glioma	6.398357289527721	5.078713210130048	EVENT	EUR	LGG, BRAF fusion	15.794661190965092	15:9	NA	common	15:9	PT_K63972GG_7316-666_Solid Tissue_Initial CNS Tumor	PA_CORT	EUR
-BS_X7EQKJZH	SAS	NA	0	0	0	1	0	1.4842	-2.5308	-13.1456	-1.4914	1.9162	PT_QT9T89S5	Normal	C18204	BS_T97EP8H0	7316-297	Female	Reported Unknown	Not Available	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	480	3861	LIVING	864	Recurrence	503	NA	Low-grade glioma	10.570841889117045	2.3655030800821355	EVENT	non-EUR	LGG, BRAF fusion	1.3141683778234086	15:9	NA	common	15:9	PT_QT9T89S5_7316-297_Solid Tissue_Initial CNS Tumor	NA	AS
-BS_XRF8D151	AFR	NA	0	0.9987	0.0013	0	0	53.9014	-14.1128	1.8096	0.1756	2.1965	PT_MPRBGGEJ	Normal	C584742	BS_KYG3H6C6	7316-2172	Male	Black or African American	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5937	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	16.254620123203285	16:9	NA	common	16:9	PT_MPRBGGEJ_7316-2172_Solid Tissue_Initial CNS Tumor	PA_INF	AFR
-BS_XWBMBWC6	EUR	NA	0	0	0.0306	0	0.9694	0.7569	11.9708	5.2201	10.2584	3.768	PT_JQ45JK94	Normal	C68388	BS_41TD9XET	7316-222	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	2750	3149	LIVING	3149	Not Applicable	NA	NA	Low-grade glioma	8.621492128678987	8.621492128678987	NO EVENT	EUR	LGG, BRAF fusion	7.529089664613279	16:9	NA	common	16:9	PT_JQ45JK94_7316-222_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_Y6ZSGEPG	EUR	NA	0	0	0.0637	0	0.9363	1.1637	11.4966	5.4769	7.4984	3.9425	PT_TH18S0JQ	Normal	C829512	BS_KH0NFCWF	7316-3068	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4932	1680	LIVING	1680	Not Applicable	NA	NA	Low-grade glioma	4.59958932238193	4.59958932238193	NO EVENT	EUR	LGG, BRAF fusion	13.503080082135524	16:9	NA	common	16:9	PT_TH18S0JQ_7316-3068_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_YWHDJ7FE	EUR	NA	0	0	0.0424	0	0.9576	0.7185	12.176	3.2727	8.527	0.5399	PT_DEYCW197	Normal	C38991	BS_6XP91JM2	7316-175	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	3917	1482	LIVING	1482	Not Applicable	NA	NA	Low-grade glioma	4.057494866529774	4.057494866529774	NO EVENT	EUR	LGG, BRAF fusion	10.72416153319644	16:9	NA	common	16:9	PT_DEYCW197_7316-175_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_Z5JH1FMC	EUR	NA	0	0	0.0453	0	0.9547	0.8511	12.5254	4.7614	7.365	1.6427	PT_SJEG0MKD	Normal	C35916	BS_JJZPY3BG	7316-146	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2396	483	LIVING	483	Not Applicable	NA	NA	Low-grade glioma	1.322381930184805	1.322381930184805	NO EVENT	EUR	LGG, BRAF fusion	6.5598904859685145	16:11	NA	common	16:11	PT_SJEG0MKD_7316-146_Solid Tissue_Initial CNS Tumor	PA_INF	EUR
-BS_ZMW21B7R	EUR	NA	0	0	0.0459	0	0.9541	2.7905	11.5171	6.1818	9.0414	1.4655	PT_XXZHRPNM	Normal	C663093	BS_SMCPASF0	7316-2572	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	1667	2602	LIVING	1371	Progressive	1689	NA	Low-grade glioma	7.123887748117728	3.753593429158111	EVENT	EUR	LGG, BRAF fusion	4.563997262149213	15:9	NA	common	15:9	PT_XXZHRPNM_7316-2572_Solid Tissue_Initial CNS Tumor	PA_MID	EUR
-BS_ZSAHMF4V	EUR	NA	0	0	0.0442	0	0.9558	-0.8768	12.1253	4.2524	7.9532	2.5912	PT_TEBD1SES	Normal	C808233	BS_K3YT05M7	7316-3054	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Optic pathway	Partial resection	1038	2363	LIVING	934	Progressive	1065	NA	Low-grade glioma	6.469541409993155	2.5571526351813825	EVENT	EUR	LGG, BRAF fusion	2.841889117043121	16:9	NA	common	16:9	PT_TEBD1SES_7316-3054_Solid Tissue_Initial CNS Tumor	PA_MID	EUR
-BS_8D40GRF9	EUR	NA	0	0	0.0625	0	0.9375	3.1701	11.2859	5.6108	8.1816	2.7069	PT_P9RT6693	Normal	C743289	BS_P3KD5EQG	7316-2566	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Optic pathway	Partial resection	3260	800	LIVING	NA	Recurrence	NA	3308	Low-grade glioma	2.190280629705681	NA	EVENT	EUR	LGG, BRAF fusion	8.92539356605065	NA	15:11	rare	rare	PT_P9RT6693_7316-2566_Solid Tissue_Recurrence	PA_MID	EUR
-BS_9YHX7QFW	EUR	NA	0	0	0.0308	0	0.9692	1.8625	13.6441	6.3932	8.1324	1.4962	PT_2YT37G8P	Normal	C77613	BS_ZJZFT0AJ	7316-2962	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Suprasellar	Partial resection	245	7504	LIVING	146	Progressive	1403	NA	Low-grade glioma	20.54483230663929	0.3997262149212868	EVENT	EUR	LGG, BRAF fusion	0.6707734428473648	NA	15:11	rare	rare	PT_2YT37G8P_7316-2962_Solid Tissue_Recurrence	PA_MID	EUR
-BS_DTYN7DX6	EUR	NA	0	0	0.0361	0	0.9639	1.1993	13.9341	4.1163	7.591	2.7302	PT_WGWMA5AZ	Normal	C36900	BS_NEX92KQH	7316-148	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Posterior fossa	Gross/Near total resection	1853	7399	LIVING	4131	Recurrence	NA	NA	Low-grade glioma	20.257357973990416	11.31006160164271	EVENT	EUR	LGG, BRAF fusion	5.073237508555784	16:9	NA	common	16:9	PT_WGWMA5AZ_7316-148_Solid Tissue_Recurrence	NA	EUR
-BS_7SE2CXHP	EUR	NA	0	0	0.0639	0	0.9361	1.4724	10.6439	5.1184	8.0322	2.3881	PT_Q6CGR1G6	Normal	C2408217	BS_6RZMWSV7	7316-4268	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Suprasellar	Partial resection	393	2579	LIVING	629	Progressive	413	NA	Low-grade glioma	7.060917180013689	1.7221081451060918	EVENT	EUR	LGG, BRAF fusion	1.0759753593429158	NA	13:11	rare	rare	PT_Q6CGR1G6_7316-4268_Solid Tissue_Progressive	NA	EUR
-BS_4NFWWRD8	AMR	NA	1e-4	1e-4	0.8691	6e-4	0.1301	3.9697	4.4515	5.6092	-0.349	0.0795	PT_3SF3NQ43	Normal	C2335032	BS_04KM3N3S	7316-5288	Male	White	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	1094	2380	LIVING	788	Progressive	NA	NA	Low-grade glioma	6.5160848733744015	2.1574264202600957	EVENT	non-EUR	LGG, BRAF fusion	2.9952087611225187	NA	13:9	rare	rare	PT_3SF3NQ43_7316-5288_Solid Tissue_Progressive	NA	AMR
-BS_8NPZJTP6	AMR	NA	0	0.0056	0.9943	0	1e-4	6.291	-1.9788	9.4436	-4.1457	0.8926	PT_WEY5N1C5	Normal	C2544993	BS_TBWPXD8S	7316-5461	Female	Reported Unknown	Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1111	1804	LIVING	369	Progressive	NA	NA	Low-grade glioma	4.939082819986311	1.0102669404517457	EVENT	non-EUR	LGG, BRAF fusion	3.0417522245037647	16:9	NA	common	16:9	PT_WEY5N1C5_7316-5461_Solid Tissue_Progressive	NA	AMR
-BS_1X63PF0Q	EUR	NA	0	0	0.202	0	0.798	1.6281	7.9957	7.2297	4.0201	3.7807	PT_2V5GJG0F	Normal	C2639211	BS_MXXN64DR	7316-6077	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4108	2529	LIVING	1638	Progressive	NA	NA	Low-grade glioma	6.924024640657084	4.484599589322382	EVENT	EUR	LGG, BRAF fusion	11.247091033538672	16:9	NA	common	16:9	PT_2V5GJG0F_7316-6077_Solid Tissue_Progressive	NA	EUR
-BS_A20FHTWX	EUR	NA	0	0	0.0673	0	0.9327	0.6547	10.4484	4.8147	7.1688	0.4039	PT_0H8VY9HP	Normal	C1077234	BS_8Q0XYNY0	7316-4427	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4368	3765	LIVING	1009	Progressive	NA	NA	Low-grade glioma	10.30800821355236	2.7624914442162902	EVENT	EUR	LGG, BRAF fusion	11.958932238193018	16:9	NA	common	16:9	PT_0H8VY9HP_7316-4427_Solid Tissue_Progressive	NA	EUR
-BS_AZPVVXFS	EUR	NA	0	0	0.0445	0	0.9555	-0.3419	11.1166	6.1265	8.6477	3.9317	PT_AX5NM47X	Normal	C1173420	BS_FBZBS9JR	7316-4683	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	696	839	LIVING	117	Progressive	NA	NA	Low-grade glioma	2.297056810403833	0.3203285420944558	EVENT	EUR	LGG, BRAF fusion	1.9055441478439423	15:9	NA	common	15:9	PT_AX5NM47X_7316-4683_Solid Tissue_Progressive	NA	EUR
-BS_KRYAZ09R	EUR	NA	0	0	0.0447	0	0.9553	1.696	10.7139	4.4816	9.6682	1.4552	PT_Y572BRC1	Normal	C136161	BS_042DVDQM	7316-485	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	150	6239	LIVING	166	Progressive - Metastatic	156	NA	Low-grade glioma	17.08145106091718	0.4544832306639288	EVENT	EUR	LGG, BRAF fusion	0.4106776180698152	15:9	NA	common	15:9	PT_Y572BRC1_7316-485_Solid Tissue_Progressive	PA_MID	EUR
-BS_MKSMSB6J	SAS	NA	0	0	0	1	0	1.3982	-3.8329	-14.9364	-3.5957	2.918	PT_Q3EP24V1	Normal	C177366	BS_235QEYMQ	7316-154	Male	Reported Unknown	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	191	2798	DECEASED	1403	Progressive - Metastatic	540	NA	Low-grade glioma	7.660506502395619	3.8412046543463383	EVENT	non-EUR	LGG, BRAF fusion	0.5229295003422314	15:9	NA	common	15:9	PT_Q3EP24V1_7316-154_Solid Tissue_Progressive	PA_MID	AS
-BS_S573YGV3	EUR	NA	0	0	0.0237	0	0.9763	0.2566	14.2499	7.2645	8.4311	2.048	PT_S3FJSBJT	Normal	C427548	BS_X9PJ715R	7316-1794	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Midline	Partial resection	6156	355	LIVING	32	Progressive	NA	6257	Low-grade glioma	0.971937029431896	0.08761122518822724	EVENT	EUR	LGG, BRAF fusion	16.854209445585216	16:9	NA	common	16:9	PT_S3FJSBJT_7316-1794_Solid Tissue_Progressive	PA_INF	EUR
-BS_TKRHXGZQ	EUR	NA	0	0	0.0287	0	0.9713	0.0614	14.6094	4.7947	7.1773	2.9735	PT_XWVQW6JX	Normal	C883509	BS_XBBBE8V2	7316-3556	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4297	3449	LIVING	379	Progressive	NA	NA	Low-grade glioma	9.442847364818617	1.0376454483230664	EVENT	EUR	LGG, BRAF fusion	11.76454483230664	16:9	NA	common	16:9	PT_XWVQW6JX_7316-3556_Solid Tissue_Progressive	NA	EUR
-BS_TTZA89Y4	EUR	NA	0	0	0.0475	0	0.9525	0.9284	12.1952	4.9201	8.3711	3.3956	PT_2VSDT9CK	Normal	C916473	BS_CQ8C6X4X	7316-3575	Female	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1684	1027	LIVING	272	Progressive	NA	NA	Low-grade glioma	2.811772758384668	0.7446954140999316	EVENT	EUR	LGG, BRAF fusion	4.610540725530458	15:9	NA	common	15:9	PT_2VSDT9CK_7316-3575_Solid Tissue_Progressive	NA	EUR
-BS_VM2GYF7B	EUR	NA	0	0	0.0519	0	0.9481	-0.0163	12.312	3.9246	7.8973	3.7933	PT_XDV8W16W	Normal	C972192	BS_AGGH3QGS	7316-3751	Male	White	Not Hispanic or Latino	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1923	3473	LIVING	3185	Progressive	NA	NA	Low-grade glioma	9.508555783709788	8.720054757015742	EVENT	EUR	LGG, BRAF fusion	5.2648870636550305	16:9	NA	common	16:9	PT_XDV8W16W_7316-3751_Solid Tissue_Progressive	PA_INF	EUR
+Kids_First_Biospecimen_ID_normal	predicted_ancestry	given_ancestry	EAS_prob	AFR_prob	AMR_prob	SAS_prob	EUR_prob	PC1	PC2	PC3	PC4	PC5	Kids_First_Participant_ID	sample_type	cohort_participant_id	reported_gender	race	ethnicity	Kids_First_Biospecimen_ID	sample_id	broad_histology	cancer_group	molecular_subtype	tumor_descriptor	CNS_region	extent_of_tumor_resection	age_at_diagnosis_days	OS_days	OS_status	EFS_days	EFS_event_type	age_at_chemo_start	age_at_radiation_start	plot_group	OS_years	EFS_years	EFS_status	EUR_status	mol_sub_group	age_at_diagnosis_years	breakpoint_exons_common	breakpoint_exons_rare	breakpoint_type	breakpoint_group	match_id	dkfz_v12_methylation_subclass
+BS_50HGKMFH	EUR	NA	0	0	0.0634	0	0.9366	-0.6254	11.0288	5.8125	6.4829	1.9051	PT_JDAGM28V	Normal	C1173297	Male	White	Not Hispanic or Latino	BS_WDXPT9NT	7316-4687	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4937	921	LIVING	921	Not Applicable	NA	NA	Low-grade glioma	2.521560574948665	2.521560574948665	NO EVENT	EUR	LGG, BRAF fusion	13.516769336071183	16:09	NA	common	16:09	PT_JDAGM28V_7316-4687_Solid Tissue_Initial CNS Tumor	NA
+BS_H3TV25PF	EUR	NA	0	0	0.0692	0	0.9308	0.8954	9.5496	4.6267	8.2349	2.2368	PT_9TPW6850	Normal	C2334786	Female	White	Not Hispanic or Latino	BS_R7VSGBAK	7316-5279	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	831	1813	LIVING	1813	Not Applicable	NA	NA	Low-grade glioma	4.963723477070499	4.963723477070499	NO EVENT	EUR	LGG, BRAF fusion	2.2751540041067764	15:09	NA	common	15:09	PT_9TPW6850_7316-5279_Solid Tissue_Initial CNS Tumor	NA
+BS_DZDN6XCP	AMR	NA	0	0.0051	0.9834	0	0.0115	16.1974	4.7274	3.8812	7.4368	2.8476	PT_2GTHCPXB	Normal	C1198758	Female	Black or African American	Not Hispanic or Latino	BS_ZSZVX4GV	7316-4736	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2228	544	LIVING	544	Not Applicable	NA	NA	Low-grade glioma	1.4893908281998631	1.4893908281998631	NO EVENT	non-EUR	LGG, BRAF fusion	6.099931553730322	16:09	NA	common	16:09	PT_2GTHCPXB_7316-4736_Solid Tissue_Initial CNS Tumor	NA
+BS_9T4AR92C	AMR	NA	2e-4	0.0052	0.99	0.001	0.0036	7.663	-0.0857	5.5694	-0.2081	-0.5152	PT_EGGE4SGY	Normal	C3293202	Male	Reported Unknown	Hispanic or Latino	BS_BXP1F9HR	7316-7522	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3934	501	LIVING	501	Not Applicable	NA	NA	Low-grade glioma	1.3716632443531829	1.3716632443531829	NO EVENT	non-EUR	LGG, BRAF fusion	10.770704996577686	16:09	NA	common	16:09	PT_EGGE4SGY_7316-7522_Solid Tissue_Initial CNS Tumor	NA
+BS_SSKCPAAX	AFR	NA	0	0.6957	0.3043	0	0	28.2834	-3.0641	2.6616	4.5041	2.8844	PT_N4563ERM	Normal	C1100727	Male	Black or African American	Not Hispanic or Latino	BS_JZV7KSF4	7316-4439	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2000	1945	LIVING	874	Progressive	NA	NA	Low-grade glioma	5.325119780971937	2.3928815879534566	EVENT	non-EUR	LGG, BRAF fusion	5.475701574264202	16:09	NA	common	16:09	PT_N4563ERM_7316-4439_Solid Tissue_Initial CNS Tumor	NA
+BS_VD8SPXEF	EUR	NA	0	0	0.03	0	0.97	0.6222	13.2957	6.8216	9.1645	3.5014	PT_1RYJXGCY	Normal	C3291111	Female	White	Not Hispanic or Latino	BS_D9T75W2D	7316-7520	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3688	661	LIVING	661	Not Applicable	NA	NA	Low-grade glioma	1.809719370294319	1.809719370294319	NO EVENT	EUR	LGG, BRAF fusion	10.097193702943189	16:09	NA	common	16:09	PT_1RYJXGCY_7316-7520_Solid Tissue_Initial CNS Tumor	NA
+BS_3FWGBMR7	AMR	NA	0	0.2431	0.7568	0	1e-4	18.9316	-1.574	4.2927	3.7932	2.8243	PT_DDQCAZJG	Normal	C3409191	Female	Reported Unknown	Hispanic or Latino	BS_6TKF4FXM	7316-8112	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3236	519	LIVING	519	Recurrence	NA	NA	Low-grade glioma	1.4209445585215603	1.4209445585215603	EVENT	non-EUR	LGG, BRAF fusion	8.85968514715948	16:09	NA	common	16:09	PT_DDQCAZJG_7316-8112_Solid Tissue_Initial CNS Tumor	NA
+BS_Z3EKFYQG	AFR	NA	0	0.9965	0.0035	0	0	49.2691	-11.4717	0.8742	2.1436	2.8909	PT_773ZPTEB	Normal	C3409314	Female	Black or African American	Not Hispanic or Latino	BS_W16AZ9VZ	7316-8115	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	249	749	LIVING	443	Progressive	NA	NA	Low-grade glioma	2.0506502395619437	1.212867898699521	EVENT	non-EUR	LGG, BRAF fusion	0.6817248459958932	16:11	NA	common	16:11	PT_773ZPTEB_7316-8115_Solid Tissue_Initial CNS Tumor	NA
+BS_MHB4G2HY	SAS	NA	0	0	0	1	0	3.5408	-6.9768	-16.918	-3.503	2.0946	PT_4E3H4SBP	Normal	C3406485	Male	Reported Unknown	Not Hispanic or Latino	BS_CA0Z7KVF	7316-8118	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2127	728	LIVING	728	Not Applicable	NA	NA	Low-grade glioma	1.9931553730321696	1.9931553730321696	NO EVENT	non-EUR	LGG, BRAF fusion	5.823408624229979	16:11	NA	common	16:11	PT_4E3H4SBP_7316-8118_Solid Tissue_Initial CNS Tumor	NA
+BS_ZZ65Y5NN	EUR	NA	0	0	0.0486	0	0.9514	0.501	13.0341	3.8493	5.9513	1.7378	PT_XZGWKXC5	Normal	C3156795	Female	White	Not Hispanic or Latino	BS_PDF449DD	7316-7494	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1803	997	LIVING	401	Recurrence	NA	NA	Low-grade glioma	2.729637234770705	1.0978781656399723	EVENT	EUR	LGG, BRAF fusion	4.936344969199179	16:09	NA	common	16:09	PT_XZGWKXC5_7316-7494_Solid Tissue_Initial CNS Tumor	NA
+BS_2WGC8HTM	EUR	NA	0	0	0.0473	0	0.9527	0.4607	9.6288	5.3521	9.3599	-0.1491	PT_VT6QDTP4	Normal	C1032462	Male	Reported Unknown	Not Hispanic or Latino	BS_NY6YP0V5	7316-3962	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Gross/Near total resection	1162	636	LIVING	636	Not Applicable	NA	NA	Low-grade glioma	1.7412731006160165	1.7412731006160165	NO EVENT	EUR	LGG, BRAF fusion	3.1813826146475015	16:09	NA	common	16:09	PT_VT6QDTP4_7316-3962_Solid Tissue_Initial CNS Tumor	NA
+BS_FG0CMQJ1	EUR	NA	0	0	0.0517	0	0.9483	-0.4461	10.9822	4.3507	8.2629	1.2224	PT_5VMBPWYG	Normal	C1032585	Male	White	Not Hispanic or Latino	BS_8Y232GZY	7316-3945	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	3092	581	LIVING	581	Not Applicable	NA	NA	Low-grade glioma	1.5906913073237507	1.5906913073237507	NO EVENT	EUR	LGG, BRAF fusion	8.465434633812457	16:09	NA	common	16:09	PT_5VMBPWYG_7316-3945_Solid Tissue_Initial CNS Tumor	NA
+BS_CY92PJKS	AMR	NA	0	0.2688	0.7311	0	1e-4	23.0267	2.3413	2.3201	7.3571	1.3181	PT_WFQNVJ4Z	Normal	C1026189	Female	White	Not Hispanic or Latino	BS_VFEE3ACW	7316-3925	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	1895	1228	LIVING	1228	Progressive	1962	NA	Low-grade glioma	3.36208076659822	3.36208076659822	EVENT	non-EUR	LGG, BRAF fusion	5.188227241615332	NA	19:09	rare	rare	PT_WFQNVJ4Z_7316-3925_Solid Tissue_Initial CNS Tumor	NA
+BS_WE4NHYEX	EUR	NA	0	0	0.0428	0	0.9572	-0.0964	12.6622	4.3777	7.8697	2.5197	PT_QJDY4Y9P	Normal	C235422	Female	White	Hispanic or Latino	BS_YPWPG2Y6	7316-562	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4754	2358	LIVING	1302	Progressive	NA	NA	Low-grade glioma	6.455852156057495	3.564681724845996	EVENT	EUR	LGG, BRAF fusion	13.015742642026009	16:09	NA	common	16:09	PT_QJDY4Y9P_7316-562_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_W9RHJJRP	EUR	NA	0	0	0.0289	0	0.9711	-0.8586	12.0089	3.3293	10.1652	3.247	PT_XPS6EJCM	Normal	C1191378	Male	Reported Unknown	Not Hispanic or Latino	BS_T57TTPMZ	7316-4727	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4669	1484	LIVING	1484	Not Applicable	NA	NA	Low-grade glioma	4.0629705681040384	4.0629705681040384	NO EVENT	EUR	LGG, BRAF fusion	12.78302532511978	16:09	NA	common	16:09	PT_XPS6EJCM_7316-4727_Solid Tissue_Initial CNS Tumor	NA
+BS_CGAQVHMJ	AMR	NA	0	0.0029	0.997	0	1e-4	3.1979	-1.1463	8.9469	-6.4908	0.4519	PT_MDJXRAB5	Normal	C701100	Male	Reported Unknown	Hispanic or Latino	BS_RC3G012N	7316-2679	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	6459	476	LIVING	476	Not Applicable	NA	NA	Low-grade glioma	1.3032169746748803	1.3032169746748803	NO EVENT	non-EUR	LGG, BRAF fusion	17.683778234086244	16:09	NA	common	16:09	PT_MDJXRAB5_7316-2679_Solid Tissue_Initial CNS Tumor	NA
+BS_WP62R0PZ	EUR	NA	0	0	0.047	0	0.953	-1.8857	9.897	4.1421	8.3063	2.4955	PT_7TD59X9Q	Normal	C2734290	Male	White	Not Hispanic or Latino	BS_HPTQDKRJ	7316-6764	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	1793	1448	LIVING	1448	Not Applicable	1807	NA	Low-grade glioma	3.9644079397672822	3.9644079397672822	NO EVENT	EUR	LGG, BRAF fusion	4.908966461327857	15:09	NA	common	15:09	PT_7TD59X9Q_7316-6764_Solid Tissue_Initial CNS Tumor	NA
+BS_DCM1WDCH	EUR	NA	0	0	0.1072	0	0.8928	4.4694	8.4847	2.5862	8.3101	0.4473	PT_S4J0JZAA	Normal	C2735028	Male	White	Not Hispanic or Latino	BS_10TK5K3B	7316-6769	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1601	1484	LIVING	1484	Not Applicable	NA	NA	Low-grade glioma	4.0629705681040384	4.0629705681040384	NO EVENT	EUR	LGG, BRAF fusion	4.383299110198494	16:11	NA	common	16:11	PT_S4J0JZAA_7316-6769_Solid Tissue_Initial CNS Tumor	NA
+BS_AXNB1ZVY	AMR	NA	0	1e-4	0.5222	0	0.4778	11.6086	7.4421	4.6022	9.1841	1.6283	PT_QZ3KCBSC	Normal	C1253370	Female	Reported Unknown	Not Available	BS_22WVSVNE	7316-4939	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3828	839	LIVING	839	Not Applicable	NA	NA	Low-grade glioma	2.297056810403833	2.297056810403833	NO EVENT	non-EUR	LGG, BRAF fusion	10.480492813141684	16:09	NA	common	16:09	PT_QZ3KCBSC_7316-4939_Solid Tissue_Initial CNS Tumor	NA
+BS_WRVYGY9A	EAS	NA	0.9978	0	0.0021	1e-4	0	-4.9879	-16.2838	3.2885	6.3518	-0.4027	PT_WS6JY9KY	Normal	C2386938	Female	More Than One Race	Not Hispanic or Latino	BS_V0BVS7KZ	7316-4964	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1887	737	LIVING	737	Not Applicable	NA	NA	Low-grade glioma	2.0177960301163584	2.0177960301163584	NO EVENT	non-EUR	LGG, BRAF fusion	5.166324435318275	15:09	NA	common	15:09	PT_WS6JY9KY_7316-4964_Solid Tissue_Initial CNS Tumor	NA
+BS_M0TPSWZG	EUR	NA	0	0	0.0437	0	0.9563	0.4483	12.996	2.9136	8.6179	3.7716	PT_PPY9WF29	Normal	C2406126	Female	White	Not Hispanic or Latino	BS_2NEBNR18	7316-5217	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3493	967	LIVING	967	Not Applicable	NA	NA	Low-grade glioma	2.647501711156742	2.647501711156742	NO EVENT	EUR	LGG, BRAF fusion	9.56331279945243	16:09	NA	common	16:09	PT_PPY9WF29_7316-5217_Solid Tissue_Initial CNS Tumor	NA
+BS_V7ZT7BSN	EUR	NA	0	0	0.0526	0	0.9474	2.8045	11.7248	1.8444	8.5259	0.3052	PT_TTQ3KXDH	Normal	C2421747	Female	White	Not Hispanic or Latino	BS_X9B4XHPR	7316-5336	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4563	1022	LIVING	1022	Not Applicable	NA	NA	Low-grade glioma	2.7980835044490076	2.7980835044490076	NO EVENT	EUR	LGG, BRAF fusion	12.492813141683778	16:09	NA	common	16:09	PT_TTQ3KXDH_7316-5336_Solid Tissue_Initial CNS Tumor	NA
+BS_B5Y01R2S	AMR	NA	0	0.004	0.996	0	0	4.674	-2.7145	10.8867	-6.4096	3.6167	PT_56SWR1FM	Normal	C1199004	Male	White	Hispanic or Latino	BS_J791FW5S	7316-4742	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3409	1888	LIVING	1888	Not Applicable	NA	NA	Low-grade glioma	5.169062286105407	5.169062286105407	NO EVENT	non-EUR	LGG, BRAF fusion	9.333333333333334	16:09	NA	common	16:09	PT_56SWR1FM_7316-4742_Solid Tissue_Initial CNS Tumor	NA
+BS_R28SHV6A	AFR	NA	0	0.9998	2e-4	0	0	62.4027	-16.5094	0.3169	2.9483	2.9041	PT_BHPBJNCP	Normal	C1174281	Male	Black or African American	Not Hispanic or Latino	BS_KB1SX2N3	7316-4675	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	875	1745	LIVING	1745	Not Applicable	NA	NA	Low-grade glioma	4.777549623545517	4.777549623545517	NO EVENT	non-EUR	LGG, BRAF fusion	2.3956194387405887	16:09	NA	common	16:09	PT_BHPBJNCP_7316-4675_Solid Tissue_Initial CNS Tumor	NA
+BS_KPAR4N94	EUR	NA	0	0	0.0398	0	0.9602	1.9682	13.1437	3.2254	8.5593	1.9045	PT_QK1GTVW1	Normal	C1077357	Male	White	Not Hispanic or Latino	BS_F7YNCQK9	7316-4429	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	3039	1787	LIVING	1787	Not Applicable	3111	NA	Low-grade glioma	4.892539356605065	4.892539356605065	NO EVENT	EUR	LGG, BRAF fusion	8.320328542094456	16:09	NA	common	16:09	PT_QK1GTVW1_7316-4429_Solid Tissue_Initial CNS Tumor	NA
+BS_F2VP92A0	EUR	NA	0	0	0.0771	0	0.9229	2.6377	8.9648	2.8607	9.012	2.111	PT_JGHYFZ35	Normal	C2668362	Male	White	Not Hispanic or Latino	BS_S4V27HQX	7316-6649	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4093	1017	LIVING	1017	Not Applicable	NA	NA	Low-grade glioma	2.784394250513347	2.784394250513347	NO EVENT	EUR	LGG, BRAF fusion	11.206023271731691	15:09	NA	common	15:09	PT_JGHYFZ35_7316-6649_Solid Tissue_Initial CNS Tumor	NA
+BS_69BE9DWN	EUR	NA	0	0	0.1786	0	0.8214	7.1125	7.6329	0.9381	6.7405	2.0329	PT_S1CYDVZW	Normal	C2646714	Male	Reported Unknown	Not Hispanic or Latino	BS_6R9JD2SD	7316-6306	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3839	90	LIVING	90	Not Applicable	NA	NA	Low-grade glioma	0.2464065708418891	0.2464065708418891	NO EVENT	EUR	LGG, BRAF fusion	10.510609171800136	16:11	NA	common	16:11	PT_S1CYDVZW_7316-6306_Solid Tissue_Initial CNS Tumor	NA
+BS_KDXHPBS9	EUR	NA	0	0	0.0544	0	0.9456	-0.8393	11.5222	5.9664	6.4434	4.1449	PT_BDPH0Z9G	Normal	C1233198	Male	White	Not Hispanic or Latino	BS_FSMFADRW	7316-4915	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3121	1337	LIVING	1337	Not Applicable	NA	NA	Low-grade glioma	3.660506502395619	3.660506502395619	NO EVENT	EUR	LGG, BRAF fusion	8.544832306639288	16:09	NA	common	16:09	PT_BDPH0Z9G_7316-4915_Solid Tissue_Initial CNS Tumor	NA
+BS_KW2TMQQ7	EUR	NA	0	0	0.0699	0	0.9301	3.0177	10.5073	3.8241	8.3029	0.5921	PT_B5KXHZ6Q	Normal	C2421501	Female	White	Not Hispanic or Latino	BS_BKZNDX9E	7316-5258	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4205	1421	LIVING	1421	Not Applicable	NA	NA	Low-grade glioma	3.890485968514716	3.890485968514716	NO EVENT	EUR	LGG, BRAF fusion	11.512662559890488	16:11	NA	common	16:11	PT_B5KXHZ6Q_7316-5258_Solid Tissue_Initial CNS Tumor	NA
+BS_4732YSHR	EUR	NA	0	0	0.0414	0	0.9586	0.7203	12.0666	4.8299	8.8903	1.9901	PT_TRZ1N1HQ	Normal	C1046730	Male	White	Not Hispanic or Latino	BS_CSZBHDKV	7316-4225	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, BRAF V600E	Initial CNS Tumor	Mixed	Biopsy only	2386	2214	LIVING	463	Progressive	2408	NA	Low-grade glioma	6.061601642710472	1.267624914442163	EVENT	EUR	LGG, BRAF V600E	6.532511978097194	16:11	NA	common	16:11	PT_TRZ1N1HQ_7316-4225_Solid Tissue_Initial CNS Tumor	NA
+BS_TDJV9506	AFR	NA	0	0.9977	0.0023	0	0	51.5383	-14.5611	2.0476	1.7339	0.8911	PT_GKFQN9WV	Normal	C2439951	Female	Black or African American	Not Hispanic or Latino	BS_KF27XVEJ	7316-5261	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	6225	1174	LIVING	1174	Not Applicable	NA	NA	Low-grade glioma	3.2142368240930868	3.2142368240930868	NO EVENT	non-EUR	LGG, BRAF fusion	17.04312114989733	15:09	NA	common	15:09	PT_GKFQN9WV_7316-5261_Solid Tissue_Initial CNS Tumor	NA
+BS_D2Y5QZ8Y	AFR	NA	0	0.984	0.016	0	0	42.277	-9.6789	2.095	1.1796	2.7893	PT_5XV23PWB	Normal	C1198881	Female	Black or African American	Not Hispanic or Latino	BS_A22Q96VJ	7316-4738	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1995	115	LIVING	115	Not Applicable	NA	NA	Low-grade glioma	0.31485284052019163	0.31485284052019163	NO EVENT	non-EUR	LGG, BRAF fusion	5.462012320328542	16:11	NA	common	16:11	PT_5XV23PWB_7316-4738_Solid Tissue_Initial CNS Tumor	NA
+BS_J6N8C6BQ	AFR	NA	0	0.9449	0.0551	0	0	36.7353	-8.6387	3.0104	2.5186	2.098	PT_GKN1EAW9	Normal	C857679	Male	Black or African American	Not Hispanic or Latino	BS_CASKCRB8	7316-3302	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1279	206	LIVING	206	Not Applicable	NA	NA	Low-grade glioma	0.5639972621492129	0.5639972621492129	NO EVENT	non-EUR	LGG, BRAF fusion	3.5017111567419574	16:09	NA	common	16:09	PT_GKN1EAW9_7316-3302_Solid Tissue_Initial CNS Tumor	NA
+BS_N5VRGAE4	SAS	NA	0	0	0	1	0	-0.271	-4.5311	-9.8255	-1.306	2.7372	PT_CRWTNE04	Normal	C2719407	Male	Asian	Not Hispanic or Latino	BS_D67XNVBS	7316-6963	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	749	955	LIVING	955	Not Applicable	NA	NA	Low-grade glioma	2.614647501711157	2.614647501711157	NO EVENT	non-EUR	LGG, BRAF fusion	2.0506502395619437	15:09	NA	common	15:09	PT_CRWTNE04_7316-6963_Solid Tissue_Initial CNS Tumor	NA
+BS_W605R83E	EUR	NA	0	0	0.031	0	0.969	1.196	13.4537	4.5082	8.8722	1.375	PT_HZ13HD7K	Normal	C2899356	Male	White	Not Hispanic or Latino	BS_JP1WHJNY	7316-4874	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, CDKN2A/B	Initial CNS Tumor	Mixed	Gross/Near total resection	5012	710	LIVING	535	Progressive	5526	NA	Low-grade glioma	1.943874058863792	1.4647501711156743	EVENT	EUR	LGG, BRAF fusion	13.722108145106091	NA	15:11	rare	rare	PT_HZ13HD7K_7316-4874_Solid Tissue_Initial CNS Tumor	NA
+BS_40PVF0T7	EUR	NA	0	0	0.0415	0	0.9585	0.6635	11.5355	6.1995	8.8824	2.4521	PT_AZAJRK9Z	Normal	C3512634	Male	White	Not Hispanic or Latino	BS_JPVVRR84	7316-7958	Low-grade astrocytic tumor	Low-grade glioma	LGG, wildtype	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2120	735	LIVING	735	Not Applicable	NA	NA	Low-grade glioma	2.0123203285420943	2.0123203285420943	NO EVENT	EUR	LGG, WT	5.804243668720055	16:09	NA	common	16:09	PT_AZAJRK9Z_7316-7958_Derived Cell Line_Initial CNS Tumor_Serum-based_8	NA
+BS_B39XQVK9	AMR	NA	0	0.0063	0.9937	0	0	-0.2444	-9.9344	11.0781	-15.0972	0.3237	PT_M97ZCS35	Normal	C330993	Female	Reported Unknown	Hispanic or Latino	BS_P33TNDFC	7316-653	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	3234	1699	LIVING	1699	Not Applicable	NA	NA	Low-grade glioma	4.65160848733744	4.65160848733744	NO EVENT	non-EUR	LGG, BRAF fusion	8.854209445585216	16:11	NA	common	16:11	PT_M97ZCS35_7316-653_Solid Tissue_Initial CNS Tumor	NA
+BS_SRD4KX67	EAS	NA	0.8158	0.006	0.1767	0.0014	0	4.4298	-17.8312	-0.4692	7.4193	-2.0151	PT_SCTH1RQ0	Normal	C3778806	Male	More Than One Race	Not Hispanic or Latino	BS_14ANJZNN	7316-7760	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	412	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	1.1279945242984255	16:09	NA	common	16:09	PT_SCTH1RQ0_7316-7760_Solid Tissue_Initial CNS Tumor	NA
+BS_QJ8VDF4Y	EUR	NA	0	0	0.0462	0	0.9538	0.591	12.0042	4.3169	7.6697	0.6054	PT_2VYJXHHQ	Normal	C2898864	Male	White	Not Hispanic or Latino	BS_DB549DHZ	7316-6966	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	311	738	LIVING	738	Not Applicable	NA	NA	Low-grade glioma	2.020533880903491	2.020533880903491	NO EVENT	EUR	LGG, BRAF fusion	0.8514715947980835	16:09	NA	common	16:09	PT_2VYJXHHQ_7316-6966_Solid Tissue_Initial CNS Tumor	NA
+BS_6MS445WA	EUR	NA	0	0	0.0487	0	0.9513	1.1321	12.1166	3.7692	8.5114	2.3035	PT_R86EY5TZ	Normal	C3579915	Female	White	Not Hispanic or Latino	BS_BA6EZCD7	7316-8743	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2220	826	LIVING	639	Recurrence	NA	NA	Low-grade glioma	2.2614647501711156	1.749486652977413	EVENT	EUR	LGG, BRAF fusion	6.078028747433265	16:09	NA	common	16:09	PT_R86EY5TZ_7316-8743_Solid Tissue_Initial CNS Tumor	NA
+BS_10R0PFJR	EUR	NA	0	0	0.0267	0	0.9733	0.7737	11.9197	5.2588	10.7726	2.631	PT_XBSCF601	Normal	C3513003	Male	White	Not Hispanic or Latino	BS_7AAHZV0E	7316-7961	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5501	699	LIVING	699	Not Applicable	NA	NA	Low-grade glioma	1.9137577002053388	1.9137577002053388	NO EVENT	EUR	LGG, BRAF fusion	15.06091718001369	16:09	NA	common	16:09	PT_XBSCF601_7316-7961_Solid Tissue_Initial CNS Tumor	NA
+BS_NZBA67NR	EUR	NA	0	1e-4	0.0548	0.051	0.8941	3.2675	5.7294	-3.2601	4.2251	1.6391	PT_Y879MGBY	Normal	C2488659	Male	Asian	Not Hispanic or Latino	BS_6BB88NQ6	7316-4866	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	2408	1377	LIVING	1377	Not Applicable	2520	NA	Low-grade glioma	3.770020533880904	3.770020533880904	NO EVENT	EUR	LGG, BRAF fusion	6.5927446954141	16:09	NA	common	16:09	PT_Y879MGBY_7316-4866_Solid Tissue_Initial CNS Tumor	NA
+BS_72KFQZHK	EUR	NA	0	0	0.0335	0	0.9665	0.7952	11.7126	4.3423	10.1012	1.8126	PT_WW0M48CT	Normal	C887445	Male	White	Not Hispanic or Latino	BS_EW8SRNV4	7316-3671	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Optic pathway	Biopsy only	2124	1637	LIVING	1637	Not Applicable	NA	NA	Low-grade glioma	4.48186173853525	4.48186173853525	NO EVENT	EUR	LGG, BRAF fusion	5.815195071868583	16:11	NA	common	16:11	PT_WW0M48CT_7316-3671_Solid Tissue_Initial CNS Tumor	NA
+BS_VB75WNBG	AMR	NA	0	8e-4	0.9992	0	0	-6.0458	-22.6785	20.2472	-33.1527	2.8136	PT_WESDNVM3	Normal	C753744	Female	White	Hispanic or Latino	BS_H88T2AEG	7316-2786	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Optic pathway	Biopsy only	173	2927	LIVING	749	Progressive	182	NA	Low-grade glioma	8.013689253935661	2.0506502395619437	EVENT	non-EUR	LGG, BRAF fusion	0.4736481861738535	NA	13:09	rare	rare	PT_WESDNVM3_7316-2786_Solid Tissue_Initial CNS Tumor	NA
+BS_1ZHT865M	EUR	NA	0	0	0.0738	0	0.9262	-0.4595	10.4894	5.3096	5.3035	1.4087	PT_S9ZZSZHR	Normal	C3732558	Female	White	Hispanic or Latino	BS_CJK43QXK	7316-9027	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3098	720	LIVING	720	Not Applicable	NA	NA	Low-grade glioma	1.9712525667351128	1.9712525667351128	NO EVENT	EUR	LGG, BRAF fusion	8.48186173853525	16:09	NA	common	16:09	PT_S9ZZSZHR_7316-9027_Solid Tissue_Initial CNS Tumor	NA
+BS_0K2KJKT6	EUR	NA	0	0	0.0554	0	0.9446	1.9421	11.4104	5.1106	8.4447	3.6274	PT_XK7P4PAC	Normal	C3702423	Male	Reported Unknown	Not Hispanic or Latino	BS_98EZ22RF	7316-8854	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Partial resection	3680	670	LIVING	670	Not Applicable	3716	NA	Low-grade glioma	1.834360027378508	1.834360027378508	NO EVENT	EUR	LGG, BRAF fusion	10.075290896646132	16:09	NA	common	16:09	PT_XK7P4PAC_7316-8854_Solid Tissue_Initial CNS Tumor	NA
+BS_EQ3YJS9P	EUR	NA	0	0	0.05	0	0.95	1.5791	10.3804	3.9994	9.6044	3.4976	PT_8127P12D	Normal	C3528132	Male	White	Not Hispanic or Latino	BS_JQ07XY76	7316-7967	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	950	708	LIVING	708	Not Applicable	NA	NA	Low-grade glioma	1.938398357289528	1.938398357289528	NO EVENT	EUR	LGG, BRAF fusion	2.6009582477754964	15:09	NA	common	15:09	PT_8127P12D_7316-7967_Solid Tissue_Initial CNS Tumor	NA
+BS_1WRWVYTD	EUR	NA	0	0	0.0528	0	0.9472	0.4587	11.7515	6.1556	7.6549	2.9697	PT_D9HXS4CK	Normal	C2662212	Female	White	Not Hispanic or Latino	BS_CKHDFEEF	7316-6085	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4573	1065	LIVING	1065	Not Applicable	NA	NA	Low-grade glioma	2.915811088295688	2.915811088295688	NO EVENT	EUR	LGG, BRAF fusion	12.5201916495551	16:11	NA	common	16:11	PT_D9HXS4CK_7316-6085_Solid Tissue_Initial CNS Tumor	NA
+BS_EEDGYHE5	AFR	NA	0	0.9987	0.0013	0	0	52.674	-15.4767	-0.4731	1.9901	1.5436	PT_11DZQ3HH	Normal	C2864670	Female	Black or African American	Not Hispanic or Latino	BS_ADVAQ07T	7316-7097	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2162	1042	LIVING	907	Progressive	NA	NA	Low-grade glioma	2.85284052019165	2.483230663928816	EVENT	non-EUR	LGG, BRAF fusion	5.919233401779603	16:09	NA	common	16:09	PT_11DZQ3HH_7316-7097_Solid Tissue_Initial CNS Tumor	NA
+BS_NV6N61QE	EUR	NA	0	0	0.0668	0	0.9332	2.393	9.5461	3.3668	9.1999	3.2043	PT_49KEX2FK	Normal	C3600948	Female	Reported Unknown	Not Available	BS_44NW0PQA	7316-8066	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1088	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	2.9787816563997263	16:09	NA	common	16:09	PT_49KEX2FK_7316-8066_Solid Tissue_Initial CNS Tumor	NA
+BS_4ZFQH6TK	EUR	NA	0	0	0.064	0	0.936	1.6055	10.1822	3.5074	8.6137	1.2658	PT_AYV78KT9	Normal	C3622227	Male	White	Not Hispanic or Latino	BS_MQH4G1NZ	7316-8836	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1477	633	LIVING	633	Not Applicable	NA	NA	Low-grade glioma	1.73305954825462	1.73305954825462	NO EVENT	EUR	LGG, BRAF fusion	4.043805612594114	16:09	NA	common	16:09	PT_AYV78KT9_7316-8836_Solid Tissue_Initial CNS Tumor	NA
+BS_Y0YTZVXW	AMR	NA	0	0.0017	0.9983	0	0	-4.5138	-18.5643	21.5727	-27.317	2.2263	PT_2HWA1TA9	Normal	C3530469	Male	Reported Unknown	Hispanic or Latino	BS_5GGBWXAQ	7316-8126	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Biopsy only	343	691	LIVING	691	Not Applicable	419	NA	Low-grade glioma	1.891854893908282	1.891854893908282	NO EVENT	non-EUR	LGG, BRAF fusion	0.9390828199863108	16:11	NA	common	16:11	PT_2HWA1TA9_7316-8126_Solid Tissue_Initial CNS Tumor	NA
+BS_ZD93F802	EUR	NA	0	0	0.058	0	0.942	-0.3351	10.895	4.7109	7.9368	3.5041	PT_W5Z2VB5Z	Normal	C3418785	Female	White	Not Hispanic or Latino	BS_BF9N8YYP	7316-7932	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	3012	203	LIVING	203	Not Applicable	NA	NA	Low-grade glioma	0.5557837097878165	0.5557837097878165	NO EVENT	EUR	LGG, BRAF fusion	8.24640657084189	16:11	NA	common	16:11	PT_W5Z2VB5Z_7316-7932_Solid Tissue_Initial CNS Tumor	NA
+BS_ATNER2VJ	AFR	NA	0	0.9844	0.0156	0	0	43.5685	-8.3457	1.3852	2.2233	1.4681	PT_XPDTCGRR	Normal	C2613381	Female	Black or African American	Not Hispanic or Latino	BS_JPMH9EXY	7316-6447	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3324	745	LIVING	745	Not Applicable	NA	NA	Low-grade glioma	2.039698836413415	2.039698836413415	NO EVENT	non-EUR	LGG, BRAF fusion	9.100616016427104	16:09	NA	common	16:09	PT_XPDTCGRR_7316-6447_Solid Tissue_Initial CNS Tumor	NA
+BS_N1JWVE7X	EUR	NA	0	0	0.0521	0	0.9479	1.5939	9.8133	6.2032	9.2167	3.0665	PT_J4AD2XSC	Normal	C2466519	Male	White	Not Hispanic or Latino	BS_VJY45WV4	7316-6032	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4107	1838	LIVING	1838	Not Applicable	NA	NA	Low-grade glioma	5.032169746748802	5.032169746748802	NO EVENT	EUR	LGG, BRAF fusion	11.24435318275154	16:09	NA	common	16:09	PT_J4AD2XSC_7316-6032_Solid Tissue_Initial CNS Tumor	NA
+BS_PTDHV486	EUR	NA	0	0	0.0507	0	0.9493	1.4244	11.9892	3.1288	8.0673	1.1106	PT_MFNW2QEB	Normal	C3860355	Male	White	Not Hispanic or Latino	BS_P3966C69	7316-9448	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3886	101	LIVING	101	Not Applicable	NA	NA	Low-grade glioma	0.27652292950034224	0.27652292950034224	NO EVENT	EUR	LGG, BRAF fusion	10.639288158795344	16:09	NA	common	16:09	PT_MFNW2QEB_7316-9448_Solid Tissue_Initial CNS Tumor	NA
+BS_RSKCJ76G	AMR	NA	0	0.0139	0.9861	0	0	0.6601	-12.593	11.4437	-13.6531	0.7338	PT_X4PV4FBS	Normal	C3879666	Female	White	Hispanic or Latino	BS_J6B8ARCR	7316-9445	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4352	90	LIVING	90	Not Applicable	NA	NA	Low-grade glioma	0.2464065708418891	0.2464065708418891	NO EVENT	non-EUR	LGG, BRAF fusion	11.915126625598903	15:09	NA	common	15:09	PT_X4PV4FBS_7316-9445_Solid Tissue_Initial CNS Tumor	NA
+BS_E6RNM5W6	EUR	NA	0	0	0.0421	0	0.9579	-0.2454	12.322	4.3818	7.9535	1.4278	PT_GNW76F1X	Normal	C3840798	Female	White	Not Hispanic or Latino	BS_WMFWMMT4	7316-8913	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1918	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	5.25119780971937	16:09	NA	common	16:09	PT_GNW76F1X_7316-8913_Solid Tissue_Initial CNS Tumor	NA
+BS_95DYPQ58	EUR	NA	0	0	0.0818	0	0.9182	5.0095	9.6148	4.0479	8.6861	0.1193	PT_HXV713W6	Normal	C3940920	Female	Reported Unknown	Not Hispanic or Latino	BS_M500BT9F	7316-9439	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1595	125	LIVING	125	Recurrence	NA	NA	Low-grade glioma	0.34223134839151265	0.34223134839151265	EVENT	EUR	LGG, BRAF fusion	4.3668720054757015	16:09	NA	common	16:09	PT_HXV713W6_7316-9439_Solid Tissue_Initial CNS Tumor	NA
+BS_N8JBPRBT	AFR	NA	0	0.9733	0.0267	0	0	41.1052	-6.2783	2.2474	5.4312	4.3488	PT_64JHC2BH	Normal	C3686556	Male	Black or African American	Not Hispanic or Latino	BS_SJDYHTR2	7316-8869	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1473	693	LIVING	693	Not Applicable	NA	NA	Low-grade glioma	1.897330595482546	1.897330595482546	NO EVENT	non-EUR	LGG, BRAF fusion	4.032854209445585	15:09	NA	common	15:09	PT_64JHC2BH_7316-8869_Solid Tissue_Initial CNS Tumor	NA
+BS_TC39FQAH	AMR	NA	0	0.0023	0.9977	0	0	1.3552	-3.1787	13.0393	-7.5125	3.5417	PT_7TVR7AJ2	Normal	C3823455	Female	Reported Unknown	Hispanic or Latino	BS_QTYXH2T2	7316-8968	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2188	527	LIVING	527	Not Applicable	NA	NA	Low-grade glioma	1.4428473648186173	1.4428473648186173	NO EVENT	non-EUR	LGG, BRAF fusion	5.990417522245037	16:09	NA	common	16:09	PT_7TVR7AJ2_7316-8968_Solid Tissue_Initial CNS Tumor	NA
+BS_SS11WGW2	EUR	NA	0	0	0.0461	0	0.9539	3.9947	12.3744	4.8532	9.2498	2.2277	PT_N8VZWF99	Normal	C3686925	Female	White	Not Hispanic or Latino	BS_SJ8T591F	7316-8865	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3763	222	LIVING	222	Not Applicable	NA	NA	Low-grade glioma	0.6078028747433265	0.6078028747433265	NO EVENT	EUR	LGG, BRAF fusion	10.302532511978097	16:09	NA	common	16:09	PT_N8VZWF99_7316-8865_Solid Tissue_Initial CNS Tumor	NA
+BS_19SJ6HYZ	EUR	NA	0	0	0.0419	0	0.9581	0.2367	13.0943	5.1825	6.8273	2.7143	PT_08M919BH	Normal	C2409078	Male	White	Not Hispanic or Latino	BS_NHZST6RQ	7316-5334	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	4232	1351	LIVING	1351	Not Applicable	4269	NA	Low-grade glioma	3.698836413415469	3.698836413415469	NO EVENT	EUR	LGG, BRAF fusion	11.586584531143052	15:09	NA	common	15:09	PT_08M919BH_7316-5334_Solid Tissue_Initial CNS Tumor	NA
+BS_SH0T81B2	AFR	NA	0	0.5195	0.4805	0	0	25.7352	-0.4007	1.9806	6.3458	2.379	PT_EQ0BRG88	Normal	C2688165	Female	Black or African American	Not Hispanic or Latino	BS_712XDVET	7316-6663	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2277	1065	LIVING	1065	Not Applicable	NA	NA	Low-grade glioma	2.915811088295688	2.915811088295688	NO EVENT	non-EUR	LGG, BRAF fusion	6.234086242299795	16:09	NA	common	16:09	PT_EQ0BRG88_7316-6663_Solid Tissue_Initial CNS Tumor	NA
+BS_N6SZ2ZQS	EUR	NA	0	0	0.3448	0	0.6551	0.0628	5.9011	6.2649	3.1644	2.3542	PT_FVHNJ901	Normal	C4049160	Female	Reported Unknown	Not Hispanic or Latino	BS_BEMRGZ51	7316-9816	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	2691	133	LIVING	133	Not Applicable	2733	NA	Low-grade glioma	0.36413415468856947	0.36413415468856947	NO EVENT	EUR	LGG, BRAF fusion	7.367556468172484	NA	16:10	rare	rare	PT_FVHNJ901_7316-9816_Solid Tissue_Initial CNS Tumor	NA
+BS_G6EZ5P9H	EUR	NA	0	0	0.0413	0	0.9587	1.2376	13.0849	3.8581	8.7122	3.429	PT_Z9BN2V4W	Normal	C2760858	Male	White	Not Hispanic or Latino	BS_39P851A7	7316-6778	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2077	727	LIVING	727	Not Applicable	NA	NA	Low-grade glioma	1.9904175222450375	1.9904175222450375	NO EVENT	EUR	LGG, BRAF fusion	5.686516084873374	16:09	NA	common	16:09	PT_Z9BN2V4W_7316-6778_Solid Tissue_Initial CNS Tumor	NA
+BS_KMEHFVFN	AFR	NA	0	0.9707	0.0293	0	0	41.2985	-6.0534	1.1524	4.8697	1.8593	PT_GAKHC0Y2	Normal	C2795544	Male	Black or African American	Hispanic or Latino	BS_5FHTNJCD	7316-7063	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1372	587	LIVING	587	Not Applicable	NA	NA	Low-grade glioma	1.6071184120465434	1.6071184120465434	NO EVENT	non-EUR	LGG, BRAF fusion	3.756331279945243	16:09	NA	common	16:09	PT_GAKHC0Y2_7316-7063_Solid Tissue_Initial CNS Tumor	NA
+BS_VPB66VG0	EUR	NA	0	0	0.0841	0	0.9159	2.9486	8.4443	3.5609	8.823	1.5949	PT_DZ86YXN6	Normal	C1152633	Male	Black or African American	Not Hispanic or Latino	BS_68DE0RFA	7316-4677	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Gross/Near total resection	1805	291	LIVING	291	Not Applicable	NA	NA	Low-grade glioma	0.7967145790554415	0.7967145790554415	NO EVENT	EUR	LGG, BRAF fusion	4.941820670773443	16:09	NA	common	16:09	PT_DZ86YXN6_7316-4677_Solid Tissue_Initial CNS Tumor	NA
+BS_H5210PS1	AFR	NA	0	0.9977	0.0023	0	0	52.1151	-12.0302	1.7992	0.9303	1.9131	PT_XB59JD00	Normal	C4021854	Male	Black or African American	Hispanic or Latino	BS_RRWF6GD6	7316-9801	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5274	400	LIVING	400	Not Applicable	NA	NA	Low-grade glioma	1.0951403148528405	1.0951403148528405	NO EVENT	non-EUR	LGG, BRAF fusion	14.439425051334702	16:09	NA	common	16:09	PT_XB59JD00_7316-9801_Solid Tissue_Initial CNS Tumor	NA
+BS_QD1S5JDX	EUR	NA	0	0	0.06	0	0.94	1.3157	11.9444	4.3753	6.7489	2.1558	PT_NHX9RARA	Normal	C3980034	Male	White	Not Hispanic or Latino	BS_1QRW0M8X	7316-9739	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	6559	357	LIVING	166	Progressive	6592	NA	Low-grade glioma	0.9774127310061602	0.4544832306639288	EVENT	EUR	LGG, BRAF fusion	17.95756331279945	16:09	NA	common	16:09	PT_NHX9RARA_7316-9739_Solid Tissue_Initial CNS Tumor	NA
+BS_H5YW42AY	EUR	NA	0	0	0.0476	0	0.9524	1.7433	11.8455	3.7752	8.6649	0.9143	PT_YDFPMXAR	Normal	C1277724	Female	White	Not Hispanic or Latino	BS_4QMRRWCX	7316-5152	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	4763	1648	LIVING	332	Progressive	5130	NA	Low-grade glioma	4.511978097193703	0.9089664613278576	EVENT	EUR	LGG, BRAF fusion	13.040383299110198	16:09	NA	common	16:09	PT_YDFPMXAR_7316-5152_Solid Tissue_Initial CNS Tumor	NA
+BS_0TEYTQJY	EUR	NA	0	0	0.0382	0	0.9618	0.9196	12.7578	4.317	8.3124	1.1758	PT_6R95FQT2	Normal	C98031	Male	White	Not Hispanic or Latino	BS_YXCVR90M	7316-459	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	5262	3323	LIVING	3323	Not Applicable	NA	NA	Low-grade glioma	9.097878165639973	9.097878165639973	NO EVENT	EUR	LGG, BRAF fusion	14.406570841889115	18:10	NA	common	18:10	PT_6R95FQT2_7316-459_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_0X88TX85	EUR	NA	0	0	0.0381	0	0.9619	1.0723	11.2818	4.085	9.917	1.3368	PT_4Z34K4XB	Normal	C142188	Female	White	Not Hispanic or Latino	BS_P36C0ABE	7316-733	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3509	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	9.607118412046544	15:09	NA	common	15:09	PT_4Z34K4XB_7316-733_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_14G6WY88	AFR	NA	0	0.9996	4e-4	0	0	59.0821	-15.2389	0.0859	2.7001	3.351	PT_YKVK5HTK	Normal	C90528	Female	Black or African American	Not Hispanic or Latino	BS_3QDRWJCF	7316-441	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2211	3264	LIVING	3264	Not Applicable	NA	NA	Low-grade glioma	8.936344969199178	8.936344969199178	NO EVENT	non-EUR	LGG, BRAF fusion	6.053388090349076	16:11	NA	common	16:11	PT_YKVK5HTK_7316-441_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_1GEXQEBZ	EUR	NA	0	0	0.1402	0	0.8598	0.809	8.2603	4.9216	4.7235	2.2696	PT_S2CXXZCF	Normal	C250551	Male	White	Hispanic or Latino	BS_KVV3G6NP	7316-643	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1373	1835	LIVING	1835	Not Applicable	NA	NA	Low-grade glioma	5.023956194387406	5.023956194387406	NO EVENT	EUR	LGG, BRAF fusion	3.759069130732375	16:09	NA	common	16:09	PT_S2CXXZCF_7316-643_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_1GMX5YEM	EUR	NA	0	0	0.0454	0	0.9546	1.6925	11.274	5.8787	8.7371	-0.0234	PT_GCKT4FJX	Normal	C972684	Female	White	Not Hispanic or Latino	BS_2HNHCSNB	7316-3919	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3242	374	LIVING	374	Not Applicable	NA	NA	Low-grade glioma	1.0239561943874058	1.0239561943874058	NO EVENT	EUR	LGG, BRAF fusion	8.876112251882272	16:09	NA	common	16:09	PT_GCKT4FJX_7316-3919_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_1KT7DF0G	AFR	NA	0	0.5783	0.4216	0	0	24.5046	-2.216	-1.3118	5.4841	2.2348	PT_ZR8MQRVG	Normal	C72693	Female	Reported Unknown	Not Hispanic or Latino	BS_MT5ZSRG4	7316-346	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	3578	3093	LIVING	1344	Progressive - Metastatic	3614	NA	Low-grade glioma	8.46817248459959	3.679671457905544	EVENT	non-EUR	LGG, BRAF fusion	9.796030116358658	16:09	NA	common	16:09	PT_ZR8MQRVG_7316-346_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_2K76WTCZ	EUR	NA	0	0	0.0493	0	0.9507	2.6653	12.8861	4.3608	7.2881	2.3237	PT_5GQ76YZJ	Normal	C37638	Male	White	Not Hispanic or Latino	BS_WXKCR17Q	7316-168	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1933	1100	LIVING	1100	Not Applicable	NA	NA	Low-grade glioma	3.0116358658453115	3.0116358658453115	NO EVENT	EUR	LGG, BRAF fusion	5.292265571526352	16:09	NA	common	16:09	PT_5GQ76YZJ_7316-168_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_2QRTD3RQ	EAS	NA	1	0	0	0	0	-6.2017	-41.7047	1.0069	7.8539	3.279	PT_X1PRY0FC	Normal	C401964	Male	Asian	Not Hispanic or Latino	BS_E2RXQ3JW	7316-1779	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Biopsy only	736	2737	LIVING	1682	Progressive	759	NA	Low-grade glioma	7.493497604380561	4.605065023956194	EVENT	non-EUR	LGG, BRAF fusion	2.0150581793292264	15:09	NA	common	15:09	PT_X1PRY0FC_7316-1779_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_2V4BP5Q9	AFR	NA	0	0.9944	0.0056	0	0	47.227	-9.8111	0.0428	3.1585	3.0335	PT_KQK98ZVP	Normal	C479085	Male	Black or African American	Not Hispanic or Latino	BS_YMDPFK0V	7316-1803	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	1119	1886	LIVING	1886	Not Applicable	1168	NA	Low-grade glioma	5.163586584531143	5.163586584531143	NO EVENT	non-EUR	LGG, BRAF fusion	3.0636550308008212	16:09	NA	common	16:09	PT_KQK98ZVP_7316-1803_Solid Tissue_Initial CNS Tumor	NA
+BS_3C702XH4	EUR	NA	0	0	0.0586	0	0.9414	3.3858	11.384	5.7927	7.3719	0.4809	PT_GQZ84ACS	Normal	C114759	Male	White	Not Hispanic or Latino	BS_3ZMH8578	7316-487	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	553	3420	LIVING	1635	Progressive	577	NA	Low-grade glioma	9.363449691991786	4.476386036960986	EVENT	EUR	LGG, BRAF fusion	1.514031485284052	NA	15:11	rare	rare	PT_GQZ84ACS_7316-487_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_3E3VYSXT	EUR	NA	0	0	0.0629	0	0.9371	1.977	8.4308	5.5248	9.3656	1.6721	PT_BDNE55YT	Normal	C226689	Male	White	Not Hispanic or Latino	BS_Y43VC4VG	7316-1710	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	1472	2308	LIVING	35	Progressive	NA	NA	Low-grade glioma	6.31895961670089	0.09582477754962354	EVENT	EUR	LGG, BRAF fusion	4.030116358658453	15:09	NA	common	15:09	PT_BDNE55YT_7316-1710_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_45VHDFRD	EUR	NA	0	0	0.0254	0	0.9746	-0.2466	11.6102	4.9831	10.8162	1.3274	PT_TB8HPJBN	Normal	C699624	Male	White	Not Hispanic or Latino	BS_G2016BE5	7316-2663	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1436	1893	LIVING	1893	Not Applicable	NA	NA	Low-grade glioma	5.1827515400410675	5.1827515400410675	NO EVENT	EUR	LGG, BRAF fusion	3.9315537303216974	16:09	NA	common	16:09	PT_TB8HPJBN_7316-2663_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_4JPDCXVR	EUR	NA	0	0	0.0374	0	0.9626	0.1509	12.8819	5.1461	8.5166	2.7107	PT_SDK91A16	Normal	C27675	Female	White	Not Hispanic or Latino	BS_47454JJ6	7316-247	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	5017	2172	LIVING	2172	Not Applicable	5047	NA	Low-grade glioma	5.946611909650924	5.946611909650924	NO EVENT	EUR	LGG, BRAF fusion	13.735797399041752	18:10	NA	common	18:10	PT_SDK91A16_7316-247_Solid Tissue_Initial CNS Tumor	NA
+BS_4RT8H37A	EUR	NA	0	0	0.093	0	0.907	1.1367	9.4703	4.9054	7.025	2.7924	PT_SMDEQVHJ	Normal	C29151	Male	White	Not Hispanic or Latino	BS_XSWF2MR1	7316-119	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	649	1156	LIVING	1156	Not Applicable	NA	NA	Low-grade glioma	3.164955509924709	3.164955509924709	NO EVENT	EUR	LGG, BRAF fusion	1.7768651608487338	16:09	NA	common	16:09	PT_SMDEQVHJ_7316-119_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_4RV40GPD	EUR	NA	0	0	0.0473	0	0.9527	1.5719	12.1118	6.4013	7.5315	1.7742	PT_CK41DW03	Normal	C22140	Male	White	Not Hispanic or Latino	BS_3AERRZQT	7316-329	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4344	2491	LIVING	270	Progressive	NA	4656	Low-grade glioma	6.8199863107460645	0.7392197125256673	EVENT	EUR	LGG, BRAF fusion	11.893223819301848	15:09	NA	common	15:09	PT_CK41DW03_7316-329_Solid Tissue_Initial CNS Tumor	NA
+BS_51ZADQ6R	EUR	NA	0	0	0.0791	0	0.9209	3.5464	9.4018	2.148	9.0263	1.2796	PT_DMHFS0HX	Normal	C808110	Female	White	Not Hispanic or Latino	BS_GCQEB05M	7316-3055	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3765	1368	LIVING	1368	Not Applicable	NA	NA	Low-grade glioma	3.7453798767967146	3.7453798767967146	NO EVENT	EUR	LGG, BRAF fusion	10.30800821355236	16:09	NA	common	16:09	PT_DMHFS0HX_7316-3055_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_5WZE7TYQ	EUR	NA	0	0	0.037	0	0.963	0.0357	12.7461	4.1339	8.1004	0.8809	PT_ZD9AYB6F	Normal	C874161	Female	White	Not Hispanic or Latino	BS_245CTSH9	7316-3323	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1850	1666	LIVING	1666	Not Applicable	NA	NA	Low-grade glioma	4.561259411362081	4.561259411362081	NO EVENT	EUR	LGG, BRAF fusion	5.065023956194388	16:09	NA	common	16:09	PT_ZD9AYB6F_7316-3323_Solid Tissue_Initial CNS Tumor	NA
+BS_6M3B3TKJ	EUR	NA	0	0	0.0338	0	0.9662	1.0431	13.4146	4.9324	8.3169	1.9236	PT_8XZY6MM1	Normal	C187083	Female	White	Not Hispanic or Latino	BS_WB8P21ED	7316-957	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2810	280	LIVING	280	Not Applicable	NA	NA	Low-grade glioma	0.7665982203969883	0.7665982203969883	NO EVENT	EUR	LGG, BRAF fusion	7.693360711841205	16:09	NA	common	16:09	PT_8XZY6MM1_7316-957_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_6QF29TRA	EUR	NA	0	0	0.0513	0	0.9487	2.6501	12.5676	4.0362	7.9871	2.759	PT_WYF217NZ	Normal	C72324	Male	White	Not Hispanic or Latino	BS_RZNNEX1Y	7316-345	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2478	1138	LIVING	1138	Not Applicable	NA	NA	Low-grade glioma	3.1156741957563314	3.1156741957563314	NO EVENT	EUR	LGG, BRAF fusion	6.784394250513347	16:09	NA	common	16:09	PT_WYF217NZ_7316-345_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_7FHJGTZG	EUR	NA	0	0	0.0415	0	0.9585	-0.295	12.2957	6.4065	7.1406	1.2236	PT_C1M4YF1R	Normal	C46617	Female	White	Not Hispanic or Latino	BS_K6BMXTW5	7316-127	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2857	3483	LIVING	3483	Not Applicable	NA	NA	Low-grade glioma	9.535934291581109	9.535934291581109	NO EVENT	EUR	LGG, BRAF fusion	7.822039698836414	18:10	NA	common	18:10	PT_C1M4YF1R_7316-127_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_8DTDM1MK	EUR	NA	0	0	0.0556	0	0.9444	0.1609	10.844	4.2706	8.2706	1.8081	PT_409Y4N1N	Normal	C28659	Male	White	Not Hispanic or Latino	BS_HW4MYBZ2	7316-84	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4334	968	LIVING	968	Not Applicable	NA	NA	Low-grade glioma	2.650239561943874	2.650239561943874	NO EVENT	EUR	LGG, BRAF fusion	11.865845311430528	15:09	NA	common	15:09	PT_409Y4N1N_7316-84_Solid Tissue_Initial CNS Tumor	NA
+BS_8PRJTBE1	EUR	NA	0	0	0.0313	0	0.9687	-1.8115	10.9087	4.7626	9.4568	2.0878	PT_1KEER2Q1	Normal	C98154	Male	White	Not Hispanic or Latino	BS_F1B71HTZ	7316-460	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3826	3344	LIVING	3344	Not Applicable	NA	NA	Low-grade glioma	9.155373032169749	9.155373032169749	NO EVENT	EUR	LGG, BRAF fusion	10.47501711156742	16:09	NA	common	16:09	PT_1KEER2Q1_7316-460_Solid Tissue_Initial CNS Tumor	NA
+BS_98RN7Y9D	AMR	NA	0	0.0112	0.9888	0	0	6.725	-4.9364	10.7441	-5.049	2.1152	PT_ZVV78QP5	Normal	C29397	Male	Reported Unknown	Hispanic or Latino	BS_2RJN5Z4W	7316-117	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3354	1145	LIVING	1145	Not Applicable	NA	NA	Low-grade glioma	3.134839151266256	3.134839151266256	NO EVENT	non-EUR	LGG, BRAF fusion	9.182751540041068	16:09	NA	common	16:09	PT_ZVV78QP5_7316-117_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_9GHGSRGG	AFR	NA	0	0.9975	0.0025	0	0	49.6854	-14.2246	-0.0569	1.5884	1.9504	PT_6TKJRSPW	Normal	C35670	Male	Black or African American	Not Hispanic or Latino	BS_WRJNMEX2	7316-162	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	6286	379	LIVING	379	Not Applicable	NA	NA	Low-grade glioma	1.0376454483230664	1.0376454483230664	NO EVENT	non-EUR	LGG, BRAF fusion	17.21013004791239	NA	14:08	rare	rare	PT_6TKJRSPW_7316-162_Solid Tissue_Initial CNS Tumor	NA
+BS_9S3N3Y5W	AFR	NA	0	0.6613	0.3387	0	0	27.2673	-2.5525	0.7035	3.6362	1.5742	PT_N9CGVG02	Normal	C551532	Male	White	Not Hispanic or Latino	BS_ABENB1H2	7316-2197	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Mixed	Gross/Near total resection	4114	2389	LIVING	2389	Not Applicable	4132	NA	Low-grade glioma	6.54072553045859	6.54072553045859	NO EVENT	non-EUR	LGG, BRAF fusion	11.263518138261464	16:11	NA	common	16:11	PT_N9CGVG02_7316-2197_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_ASJMZMN6	AFR	NA	0	0.9653	0.0347	0	0	38.7009	-8.813	1.7644	1.7081	1.9075	PT_JXGMAHHN	Normal	C136530	Female	Black or African American	Hispanic or Latino	BS_MWKJF6XH	7316-874	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	796	3279	LIVING	548	Progressive - Metastatic	810	NA	Low-grade glioma	8.97741273100616	1.5003422313483916	EVENT	non-EUR	LGG, BRAF fusion	2.1793292265571527	16:09	NA	common	16:09	PT_JXGMAHHN_7316-874_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_AZG06JFG	EUR	NA	0	0	0.0875	0	0.9125	2.0026	10.1577	3.9353	6.5803	0.7698	PT_3RN24N9X	Normal	C22509	Male	White	Not Hispanic or Latino	BS_VW96PFKQ	7316-20	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1469	3736	LIVING	3736	Not Applicable	NA	NA	Low-grade glioma	10.22861054072553	10.22861054072553	NO EVENT	EUR	LGG, BRAF fusion	4.0219028062970565	16:09	NA	common	16:09	PT_3RN24N9X_7316-20_Solid Tissue_Initial CNS Tumor	PA_INF_FGFR
+BS_BXTHPE56	EUR	NA	0	0	0.0932	0	0.9068	2.0179	9.5255	1.106	6.7904	3.1832	PT_A9F8Y6MA	Normal	C111930	Male	White	Not Hispanic or Latino	BS_ZKZACPVV	7316-476	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Biopsy only	199	NA	NA	NA	Progressive - Metastatic	222	NA	Low-grade glioma	NA	NA	EVENT	EUR	LGG, BRAF fusion	0.5448323066392882	15:09	NA	common	15:09	PT_A9F8Y6MA_7316-476_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_CBVA073E	EUR	NA	0	0	0.0576	0	0.9424	1.1969	10.7846	4.291	8.4884	2.1323	PT_TS0FW57Z	Normal	C580068	Male	White	Not Hispanic or Latino	BS_Q0XBZP88	7316-2167	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5766	1545	LIVING	1545	Not Applicable	NA	NA	Low-grade glioma	4.229979466119096	4.229979466119096	NO EVENT	EUR	LGG, BRAF fusion	15.786447638603695	16:09	NA	common	16:09	PT_TS0FW57Z_7316-2167_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_CJFTT8ZC	EUR	NA	0	0	0.0457	0	0.9543	2.7041	11.2259	4.7737	9.5922	2.535	PT_CGPJY881	Normal	C230871	Female	White	Not Hispanic or Latino	BS_XKP747AS	7316-891	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5213	770	LIVING	770	Not Applicable	NA	NA	Low-grade glioma	2.108145106091718	2.108145106091718	NO EVENT	EUR	LGG, BRAF fusion	14.272416153319645	16:09	NA	common	16:09	PT_CGPJY881_7316-891_Solid Tissue_Initial CNS Tumor	NA
+BS_D9FXAR11	EUR	NA	0	0	0.0471	0	0.9529	0.5254	12.0699	4.5201	8.2602	2.2055	PT_6MWPJ96F	Normal	C226566	Female	White	Not Hispanic or Latino	BS_6GV08HTE	7316-1711	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2889	2420	LIVING	2420	Not Applicable	NA	NA	Low-grade glioma	6.625598904859685	6.625598904859685	NO EVENT	EUR	LGG, BRAF fusion	7.909650924024641	16:09	NA	common	16:09	PT_6MWPJ96F_7316-1711_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_DJ7XB1DM	EUR	NA	0	0	0.0665	0	0.9335	1.2428	10.1674	4.6862	8.1771	2.6536	PT_9B6KWJT2	Normal	C155472	Female	White	Not Hispanic or Latino	BS_VQC2PE2B	7316-1226	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4947	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	13.544147843942506	16:11	NA	common	16:11	PT_9B6KWJT2_7316-1226_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_DMD12ZRF	EUR	NA	0	0	0.0466	0	0.9534	2.019	11.789	4.842	9.0002	2.9802	PT_0EWY6S6S	Normal	C1041441	Male	White	Not Hispanic or Latino	BS_GAA327FP	7316-3491	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3999	1322	LIVING	1322	Not Applicable	NA	NA	Low-grade glioma	3.619438740588638	3.619438740588638	NO EVENT	EUR	LGG, BRAF fusion	10.948665297741274	15:09	NA	common	15:09	PT_0EWY6S6S_7316-3491_Solid Tissue_Initial CNS Tumor	NA
+BS_EK6AB5ZC	EUR	NA	0	0	0.0449	0	0.9551	0.2165	12.0961	4.9989	8.4334	3.3793	PT_EW604JB3	Normal	C149322	Female	White	Not Hispanic or Latino	BS_N8D9FH6M	7316-1134	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1244	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	3.405886379192334	15:09	NA	common	15:09	PT_EW604JB3_7316-1134_Solid Tissue_Initial CNS Tumor	NA
+BS_F8Y7NRK8	EUR	NA	0	0	0.0645	0	0.9355	0.5825	10.5381	2.0661	8.4467	1.914	PT_5P3XJ97K	Normal	C90405	Male	Reported Unknown	Not Hispanic or Latino	BS_RB8VSEVG	7316-390	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4667	1800	LIVING	1800	Not Applicable	NA	NA	Low-grade glioma	4.9281314168377826	4.9281314168377826	NO EVENT	EUR	LGG, BRAF fusion	12.777549623545516	16:09	NA	common	16:09	PT_5P3XJ97K_7316-390_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_FBZQ4DXA	AFR	NA	0	0.6055	0.3945	0	0	27.0334	-1.26	3.1211	5.6259	3.6672	PT_AC5SD9AC	Normal	C522996	Male	Black or African American	Not Hispanic or Latino	BS_VPJ9CARN	7316-2291	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1598	3227	LIVING	562	Progressive	1620	NA	Low-grade glioma	8.83504449007529	1.538672142368241	EVENT	non-EUR	LGG, BRAF fusion	4.375085557837098	16:09	NA	common	16:09	PT_AC5SD9AC_7316-2291_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_FQ58DAZV	EUR	NA	0	0	0.0432	0	0.9568	0.1848	12.9102	5.7824	7.7689	4.1821	PT_C2VY5NM6	Normal	C155103	Female	White	Not Hispanic or Latino	BS_N0Z6V2YG	7316-875	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Partial resection	735	2883	LIVING	2883	Not Applicable	NA	NA	Low-grade glioma	7.893223819301848	7.893223819301848	NO EVENT	EUR	LGG, BRAF fusion	2.0123203285420943	NA	10:09	rare	rare	PT_C2VY5NM6_7316-875_Solid Tissue_Initial CNS Tumor	NA
+BS_GGNKMKW9	AMR	NA	0	0.0337	0.9663	0	0	12.6023	-6.3588	8.7571	-5.8444	3.1268	PT_EZEMVRVT	Normal	C965673	Male	White	Not Hispanic or Latino	BS_32HAVF6S	7316-3154	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Gross/Near total resection	1171	1792	LIVING	1792	Not Applicable	NA	NA	Low-grade glioma	4.906228610540725	4.906228610540725	NO EVENT	non-EUR	LGG, BRAF fusion	3.2060232717316905	16:09	NA	common	16:09	PT_EZEMVRVT_7316-3154_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_GMJP7PN2	AMR	NA	0	0.0087	0.9732	1e-4	0.0179	15.0326	4.2572	2.1828	7.0632	0.2959	PT_9C2G356W	Normal	C883632	Male	Reported Unknown	Not Hispanic or Latino	BS_1VMBA3BN	7316-3555	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1982	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	5.426420260095825	16:09	NA	common	16:09	PT_9C2G356W_7316-3555_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_GNH80DDG	EUR	NA	0	1e-4	0.0823	0.0071	0.9106	5.2321	6.1274	-3.0005	5.2367	1.5494	PT_BK92NM09	Normal	C717336	Female	Reported Unknown	Not Hispanic or Latino	BS_XVYRXN8J	7316-2669	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1357	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	3.7152635181382614	16:09	NA	common	16:09	PT_BK92NM09_7316-2669_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_HGPJ76NM	EUR	NA	0	0	0.0556	0	0.9444	3.0829	11.8785	3.9437	7.6232	0.719	PT_XSS1ANXD	Normal	C121524	Male	White	Not Hispanic or Latino	BS_FQ2ZBMPA	7316-495	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1391	1974	LIVING	1974	Not Applicable	NA	NA	Low-grade glioma	5.404517453798768	5.404517453798768	NO EVENT	EUR	LGG, BRAF fusion	3.808350444900753	16:09	NA	common	16:09	PT_XSS1ANXD_7316-495_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_HM2ZG2J7	EUR	NA	0	0	0.045	0	0.955	1.5012	11.139	4.6634	9.3703	2.4465	PT_PFA762TK	Normal	C75276	Male	White	Not Hispanic or Latino	BS_XHAQXDR0	7316-368	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	796	2931	LIVING	222	Recurrence	NA	NA	Low-grade glioma	8.02464065708419	0.6078028747433265	EVENT	EUR	LGG, BRAF fusion	2.1793292265571527	16:09	NA	common	16:09	PT_PFA762TK_7316-368_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_HMWZ2893	EUR	NA	0	0	0.0357	0	0.9643	2.2387	11.387	5.0681	10.3626	2.9185	PT_4TASAQKA	Normal	C916719	Male	White	Not Hispanic or Latino	BS_AEMRNSQX	7316-3566	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	4382	1610	LIVING	1610	Not Applicable	NA	NA	Low-grade glioma	4.407939767282683	4.407939767282683	NO EVENT	EUR	LGG, BRAF fusion	11.997262149212869	16:09	NA	common	16:09	PT_4TASAQKA_7316-3566_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_HS2BZ6T2	EUR	NA	0	0	0.0607	0	0.9393	1.0001	11.388	5.4068	6.9503	1.7552	PT_MNR94DEV	Normal	C77367	Male	White	Not Hispanic or Latino	BS_ZP89F1JY	7316-370	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3870	772	LIVING	772	Not Applicable	NA	NA	Low-grade glioma	2.113620807665982	2.113620807665982	NO EVENT	EUR	LGG, BRAF fusion	10.595482546201232	18:10	NA	common	18:10	PT_MNR94DEV_7316-370_Solid Tissue_Initial CNS Tumor	NA
+BS_HVCBQ58H	AMR	NA	0	0.0109	0.9891	0	0	0.6715	-10.2062	13.2929	-11.9895	2.5761	PT_EQ5C5TEA	Normal	C974898	Male	Reported Unknown	Hispanic or Latino	BS_0S617SMM	7316-3922	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, other MAPK	Initial CNS Tumor	Mixed	Gross/Near total resection	4043	1982	LIVING	1066	Second Malignancy - Metastatic	4070	4070	Low-grade glioma	5.426420260095825	2.91854893908282	EVENT	non-EUR	LGG, BRAF fusion	11.069130732375086	18:10	NA	common	18:10	PT_EQ5C5TEA_7316-3922_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_JEPRW1KE	SAS	NA	0	0	0	1	0	-0.396	-2.9757	-9.9711	-2.8433	1.8746	PT_962TCBVR	Normal	C88683	Male	American Indian or Alaska Native	Not Hispanic or Latino	BS_2CQ6K2JW	7316-391	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	1359	2866	LIVING	358	Recurrence	NA	NA	Low-grade glioma	7.846680355920602	0.9801505817932924	EVENT	non-EUR	LGG, BRAF fusion	3.7207392197125255	16:09	NA	common	16:09	PT_962TCBVR_7316-391_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_JGTBRH16	EUR	NA	0	0	0.042	0	0.958	1.2334	11.9999	3.2744	8.9438	0.1524	PT_M5HDHQNQ	Normal	C102459	Male	White	Not Hispanic or Latino	BS_GKN0B47F	7316-475	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1986	2708	LIVING	505	Progressive	2585	NA	Low-grade glioma	7.41409993155373	1.3826146475017111	EVENT	EUR	LGG, BRAF fusion	5.437371663244353	16:09	NA	common	16:09	PT_M5HDHQNQ_7316-475_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_JQB0CTE7	EUR	NA	0	0	0.1306	0	0.8694	2.2089	8.5639	2.5278	6.7735	1.6054	PT_0K0DPVF6	Normal	C59532	Male	White	Not Hispanic or Latino	BS_Z4Q8RH5M	7316-121	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2480	2866	LIVING	799	Second Malignancy	NA	NA	Low-grade glioma	7.846680355920602	2.187542778918549	EVENT	EUR	LGG, BRAF fusion	6.789869952087611	16:09	NA	common	16:09	PT_0K0DPVF6_7316-121_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_K9NDFNWV	AMR	NA	0	0.0263	0.973	1e-4	6e-4	14.7444	1.2067	6.4303	0.9198	0.7738	PT_ATE3YRH5	Normal	C868872	Female	Reported Unknown	Hispanic or Latino	BS_04B8X54S	7316-3308	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3106	1724	LIVING	1724	Not Applicable	NA	NA	Low-grade glioma	4.720054757015743	4.720054757015743	NO EVENT	non-EUR	LGG, BRAF fusion	8.503764544832306	16:09	NA	common	16:09	PT_ATE3YRH5_7316-3308_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_KA6B8TG8	EUR	NA	0	0	0.0677	0	0.9323	1.5266	10.9751	4.9975	7.1924	1.7255	PT_FKWCVXNC	Normal	C68634	Female	White	Not Hispanic or Latino	BS_GDPZN3SD	7316-332	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1178	1523	LIVING	1523	Not Applicable	NA	NA	Low-grade glioma	4.16974674880219	4.16974674880219	NO EVENT	EUR	LGG, BRAF fusion	3.2251882272416155	16:09	NA	common	16:09	PT_FKWCVXNC_7316-332_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_KTKMBKXB	EUR	NA	0	0	0.0684	0	0.9316	0.7722	11.3573	1.5736	7.1444	2.378	PT_H57TEQDT	Normal	C647595	Female	White	Not Hispanic or Latino	BS_CP435MAC	7316-2324	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	1227	2245	LIVING	1245	Progressive	2739	NA	Low-grade glioma	6.146475017111568	3.4086242299794662	EVENT	EUR	LGG, BRAF fusion	3.359342915811088	16:09	NA	common	16:09	PT_H57TEQDT_7316-2324_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_KWQ8A6AJ	EUR	NA	0	0	0.0545	0	0.9455	1.1619	12.1344	3.7096	7.3077	1.9794	PT_E1TRJP8V	Normal	C46371	Male	White	Not Hispanic or Latino	BS_SK949N33	7316-134	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	2419	2596	LIVING	180	Progressive	NA	2627	Low-grade glioma	7.107460643394935	0.4928131416837782	EVENT	EUR	LGG, BRAF fusion	6.622861054072553	16:09	NA	common	16:09	PT_E1TRJP8V_7316-134_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_M5M3BPDH	EUR	NA	0	0	0.0464	0	0.9536	0.5017	12.105	6.4089	7.7019	2.5073	PT_6N1QWCXE	Normal	C1028403	Male	White	Not Hispanic or Latino	BS_D2BZ25FW	7316-3169	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2869	1179	LIVING	1179	Not Applicable	NA	NA	Low-grade glioma	3.2279260780287475	3.2279260780287475	NO EVENT	EUR	LGG, BRAF fusion	7.854893908281999	16:11	NA	common	16:11	PT_6N1QWCXE_7316-3169_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_MTDQBCQK	EUR	NA	0	0	0.0621	0	0.9379	0.4607	10.5619	4.551	8.1264	3.8362	PT_YJBPEF4V	Normal	C311559	Male	White	Not Hispanic or Latino	BS_PC2YQ4F6	7316-938	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	7149	783	LIVING	783	Not Applicable	NA	NA	Low-grade glioma	2.1437371663244353	2.1437371663244353	NO EVENT	EUR	LGG, BRAF fusion	19.57289527720739	16:09	NA	common	16:09	PT_YJBPEF4V_7316-938_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_NBM9CPE4	EUR	NA	0	0	0.0393	0	0.9607	1.8161	12.8902	4.3674	8.7285	2.0703	PT_SBHN5F68	Normal	C100491	Male	White	Not Hispanic or Latino	BS_Q5XKTB1V	7316-516	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2539	1986	LIVING	1986	Not Applicable	NA	NA	Low-grade glioma	5.437371663244353	5.437371663244353	NO EVENT	EUR	LGG, BRAF fusion	6.951403148528406	18:10	NA	common	18:10	PT_SBHN5F68_7316-516_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_P52FTQNA	AFR	NA	0	0.9936	0.0064	0	0	48.2113	-10.9385	3.1765	4.2956	1.7048	PT_KXB1PJV0	Normal	C58179	Female	Black or African American	Not Hispanic or Latino	BS_6Q9PMNWY	7316-206	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4216	739	LIVING	739	Not Applicable	NA	NA	Low-grade glioma	2.023271731690623	2.023271731690623	NO EVENT	non-EUR	LGG, BRAF fusion	11.542778918548938	15:09	NA	common	15:09	PT_KXB1PJV0_7316-206_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_PF7546KW	AMR	NA	0	0.007	0.9927	1e-4	2e-4	11.7519	-0.3374	7.0963	-1.2231	1.9778	PT_J0SZ1SX5	Normal	C806019	Female	Reported Unknown	Hispanic or Latino	BS_5NAKYS1S	7316-2589	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	210	2736	LIVING	351	Progressive	219	NA	Low-grade glioma	7.490759753593429	0.9609856262833676	EVENT	non-EUR	LGG, BRAF fusion	0.5749486652977412	15:09	NA	common	15:09	PT_J0SZ1SX5_7316-2589_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_PSAZZC71	AMR	NA	2e-4	0.0354	0.9608	9e-4	0.0027	11.3626	1.0323	4.4392	2.0605	0.3034	PT_V07ZH5JS	Normal	C96186	Female	White	Hispanic or Latino	BS_2F70R10Z	7316-472	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	5399	1000	LIVING	1000	Not Applicable	5454	NA	Low-grade glioma	2.737850787132101	2.737850787132101	NO EVENT	non-EUR	LGG, BRAF fusion	14.781656399726216	16:09	NA	common	16:09	PT_V07ZH5JS_7316-472_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_PT1DC3ZF	AMR	NA	0	6e-4	0.9994	0	0	-8.7667	-26.1093	21.8184	-35.1307	2.6722	PT_HV6C0T34	Normal	C818688	Female	Reported Unknown	Hispanic or Latino	BS_16TBX6G5	7316-3062	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1612	391	LIVING	391	Not Applicable	NA	NA	Low-grade glioma	1.0704996577686516	1.0704996577686516	NO EVENT	non-EUR	LGG, BRAF fusion	4.413415468856948	15:09	NA	common	15:09	PT_HV6C0T34_7316-3062_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_Q2TEFDZ7	EUR	NA	0	0	0.0984	0	0.9016	0.0787	6.8871	5.129	7.7578	1.245	PT_YRMG61G8	Normal	C621396	Male	White	Not Hispanic or Latino	BS_PV130A29	7316-2305	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF, RTK	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2264	1360	LIVING	1360	Not Applicable	NA	NA	Low-grade glioma	3.7234770704996576	3.7234770704996576	NO EVENT	EUR	LGG, BRAF fusion	6.198494182067077	16:09	NA	common	16:09	PT_YRMG61G8_7316-2305_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_Q7NF95N0	EUR	NA	0	0	0.0866	0	0.9134	0.5925	10.6126	4.6188	6.4388	3.3171	PT_JYZA0PNV	Normal	C95571	Male	White	Not Hispanic or Latino	BS_8W0FNBWF	7316-437	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	2321	NA	LIVING	NA	Not Applicable	2365	NA	Low-grade glioma	NA	NA	NO EVENT	EUR	LGG, BRAF fusion	6.354551676933607	16:09	NA	common	16:09	PT_JYZA0PNV_7316-437_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_Q80JX5G6	EUR	NA	0	0	0.0377	0	0.9623	0.1725	11.6651	4.1524	9.5243	2.3111	PT_S0PBN4M7	Normal	C479700	Male	White	Not Hispanic or Latino	BS_Q50P97Y0	7316-1805	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Partial resection	392	2067	LIVING	316	Progressive	709	NA	Low-grade glioma	5.6591375770020536	0.865160848733744	EVENT	EUR	LGG, BRAF fusion	1.0732375085557837	16:09	NA	common	16:09	PT_S0PBN4M7_7316-1805_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_QYQNZDD8	EUR	NA	0	0	0.0556	0	0.9444	0.9017	11.1816	4.057	8.3544	1.851	PT_TPSMT960	Normal	C78966	Female	White	Not Hispanic or Latino	BS_4M0ZMCDC	7316-400	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	637	1522	LIVING	1522	Not Applicable	NA	NA	Low-grade glioma	4.167008898015058	4.167008898015058	NO EVENT	EUR	LGG, BRAF fusion	1.7440109514031483	16:09	NA	common	16:09	PT_TPSMT960_7316-400_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_RG2CTN65	AFR	NA	0	0.9965	0.0035	0	0	49.4484	-13.0838	1.9204	1.8907	1.8186	PT_1BV6ND1D	Normal	C908601	Female	Black or African American	Not Hispanic or Latino	BS_MZJJRDZF	7316-3203	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1453	1069	LIVING	1069	Not Applicable	NA	NA	Low-grade glioma	2.926762491444216	2.926762491444216	NO EVENT	non-EUR	LGG, BRAF fusion	3.978097193702943	16:09	NA	common	16:09	PT_1BV6ND1D_7316-3203_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_RVFDSK8D	AFR	NA	0	0.7193	0.2807	0	0	29.5296	-2.9664	3.3183	5.0698	2.5157	PT_5ABCFCSK	Normal	C115251	Male	Reported Unknown	Hispanic or Latino	BS_APAQ2X2S	7316-1851	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	5804	1698	LIVING	626	Progressive	NA	6469	Low-grade glioma	4.648870636550308	1.7138945927446954	EVENT	non-EUR	LGG, BRAF fusion	15.890485968514716	16:09	NA	common	16:09	PT_5ABCFCSK_7316-1851_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_S8CT9Z7J	AMR	NA	0	0.0068	0.9932	0	0	0.0105	-8.4293	12.4092	-12.616	2.625	PT_5M8A47WW	Normal	C95448	Female	Reported Unknown	Hispanic or Latino	BS_50XV7CTQ	7316-436	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Not Reported	603	2815	LIVING	2815	Not Applicable	NA	NA	Low-grade glioma	7.707049965776865	7.707049965776865	NO EVENT	non-EUR	LGG, BRAF fusion	1.6509240246406571	16:09	NA	common	16:09	PT_5M8A47WW_7316-436_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_SCCY3YMQ	AFR	NA	0	0.9984	0.0016	0	0	53.203	-12.8773	0.2516	0.5011	1.3453	PT_K30AWQ8A	Normal	C86100	Female	Black or African American	Not Hispanic or Latino	BS_9GSWPZ44	7316-393	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Spine	Partial resection	4087	1721	LIVING	1721	Not Applicable	NA	4171	Low-grade glioma	4.7118412046543465	4.7118412046543465	NO EVENT	non-EUR	LGG, BRAF fusion	11.189596167008895	15:09	NA	common	15:09	PT_K30AWQ8A_7316-393_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_SG7EPZ4W	EUR	NA	0	0	0.1821	0	0.8178	2.4566	7.7484	4.7149	4.6751	3.0933	PT_DW6V5V8E	Normal	C245631	Female	Reported Unknown	Hispanic or Latino	BS_F4D169Q7	7316-924	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Midline	Partial resection	1069	1612	LIVING	1612	Not Applicable	NA	NA	Low-grade glioma	4.413415468856948	4.413415468856948	NO EVENT	EUR	LGG, BRAF fusion	2.926762491444216	15:09	NA	common	15:09	PT_DW6V5V8E_7316-924_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_SP886CE6	EUR	NA	0	0	0.0963	0	0.9037	4.5908	11.0106	2.5065	6.3307	1.7441	PT_27FDWCVZ	Normal	C41574	Male	White	Not Hispanic or Latino	BS_D09VWF8H	7316-184	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3295	601	LIVING	601	Not Applicable	NA	NA	Low-grade glioma	1.6454483230663928	1.6454483230663928	NO EVENT	EUR	LGG, BRAF fusion	9.021218343600276	16:09	NA	common	16:09	PT_27FDWCVZ_7316-184_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_SWHT4TC3	EUR	NA	0	0	0.0662	0	0.9338	1.9483	12.4076	3.2526	6.3223	3.174	PT_6VJ5PNKS	Normal	C584865	Female	White	Not Hispanic or Latino	BS_JJWC13GG	7316-2174	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3979	1874	LIVING	1874	Not Applicable	NA	NA	Low-grade glioma	5.130732375085558	5.130732375085558	NO EVENT	EUR	LGG, BRAF fusion	10.89390828199863	16:09	NA	common	16:09	PT_6VJ5PNKS_7316-2174_Solid Tissue_Initial CNS Tumor	NA
+BS_T5TB5NM7	EUR	NA	0	0	0.0769	0	0.9231	2.3066	9.4218	4.5118	8.269	1.8329	PT_RFF7MKTC	Normal	C182655	Female	White	Not Hispanic or Latino	BS_PP4WJBNR	7316-954	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	1818	2822	LIVING	2822	Not Applicable	NA	NA	Low-grade glioma	7.72621492128679	7.72621492128679	NO EVENT	EUR	LGG, BRAF fusion	4.97741273100616	16:11	NA	common	16:11	PT_RFF7MKTC_7316-954_Solid Tissue_Initial CNS Tumor	NA
+BS_TA48KCWF	EUR	NA	0	0	0.0376	0	0.9624	1.1834	10.3582	6.0587	10.1315	2.1281	PT_7TEHW6VQ	Normal	C744888	Male	White	Not Hispanic or Latino	BS_KYPZRS4S	7316-2755	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3998	1854	LIVING	1854	Not Applicable	NA	NA	Low-grade glioma	5.075975359342916	5.075975359342916	NO EVENT	EUR	LGG, BRAF fusion	10.94592744695414	16:09	NA	common	16:09	PT_7TEHW6VQ_7316-2755_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_TGEBNSS2	AMR	NA	0	0.0048	0.9952	0	0	-1.0248	-8.7101	12.0544	-14.4883	1.8591	PT_5VAKED5F	Normal	C736647	Male	Reported Unknown	Hispanic or Latino	BS_7M5272WN	7316-2689	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Ventricles	Gross/Near total resection	1607	665	LIVING	665	Not Applicable	NA	NA	Low-grade glioma	1.8206707734428471	1.8206707734428471	NO EVENT	non-EUR	LGG, BRAF fusion	4.399726214921286	16:11	NA	common	16:11	PT_5VAKED5F_7316-2689_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_TYCE05MW	EUR	NA	0	0	0.0543	0	0.9457	1.2203	11.372	5.9793	7.8621	1.8104	PT_6E8JYRXM	Normal	C736401	Male	White	Not Hispanic or Latino	BS_3R0KN6Z4	7316-2729	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	996	1868	LIVING	1868	Not Applicable	NA	NA	Low-grade glioma	5.114305270362765	5.114305270362765	NO EVENT	EUR	LGG, BRAF fusion	2.726899383983573	15:09	NA	common	15:09	PT_6E8JYRXM_7316-2729_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_V8GEAEZJ	EUR	NA	0	0	0.0598	0	0.9402	0.4041	10.5048	5.3864	8.0204	2.5533	PT_YGN06RPZ	Normal	C521274	Male	White	Not Hispanic or Latino	BS_3C4YAMKJ	7316-2204	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Biopsy only	1383	3203	LIVING	1118	Progressive - Metastatic	1400	NA	Low-grade glioma	8.76933607118412	3.060917180013689	EVENT	EUR	LGG, BRAF fusion	3.786447638603696	16:11	NA	common	16:11	PT_YGN06RPZ_7316-2204_Solid Tissue_Initial CNS Tumor	NA
+BS_VP4WNVZG	EUR	NA	0	0	0.4605	0	0.5395	-0.6682	5.4983	7.6088	1.737	1.5916	PT_VJ0M4E8Y	Normal	C581913	Female	White	Not Hispanic or Latino	BS_FFD25TTK	7316-2099	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2154	1700	LIVING	1700	Not Applicable	NA	NA	Low-grade glioma	4.654346338124572	4.654346338124572	NO EVENT	EUR	LGG, BRAF fusion	5.897330595482546	16:09	NA	common	16:09	PT_VJ0M4E8Y_7316-2099_Solid Tissue_Initial CNS Tumor	NA
+BS_WYX72YAC	EUR	NA	0	0	0.0398	0	0.9602	0.9461	10.9107	4.5311	9.8332	1.8282	PT_1J2DT6MM	Normal	C623856	Female	White	Not Hispanic or Latino	BS_THH0CE5A	7316-2184	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	3602	1959	LIVING	1959	Not Applicable	NA	NA	Low-grade glioma	5.363449691991787	5.363449691991787	NO EVENT	EUR	LGG, BRAF fusion	9.86173853524983	16:09	NA	common	16:09	PT_1J2DT6MM_7316-2184_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_X5H2K1XG	EUR	NA	0	0	0.0591	0	0.9409	1.9474	9.9705	5.0581	8.9344	2.7928	PT_K63972GG	Normal	C403317	Male	White	Not Hispanic or Latino	BS_EQE19CB0	7316-666	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	5769	2337	LIVING	1855	Progressive	NA	NA	Low-grade glioma	6.398357289527721	5.078713210130048	EVENT	EUR	LGG, BRAF fusion	15.794661190965092	15:09	NA	common	15:09	PT_K63972GG_7316-666_Solid Tissue_Initial CNS Tumor	PA_CORT
+BS_X7EQKJZH	SAS	NA	0	0	0	1	0	1.4842	-2.5308	-13.1456	-1.4914	1.9162	PT_QT9T89S5	Normal	C18204	Female	Reported Unknown	Not Available	BS_T97EP8H0	7316-297	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Suprasellar	Partial resection	480	3861	LIVING	864	Recurrence	503	NA	Low-grade glioma	10.570841889117045	2.3655030800821355	EVENT	non-EUR	LGG, BRAF fusion	1.3141683778234086	15:09	NA	common	15:09	PT_QT9T89S5_7316-297_Solid Tissue_Initial CNS Tumor	NA
+BS_XRF8D151	AFR	NA	0	0.9987	0.0013	0	0	53.9014	-14.1128	1.8096	0.1756	2.1965	PT_MPRBGGEJ	Normal	C584742	Male	Black or African American	Not Hispanic or Latino	BS_KYG3H6C6	7316-2172	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	5937	NA	LIVING	NA	Not Applicable	NA	NA	Low-grade glioma	NA	NA	NO EVENT	non-EUR	LGG, BRAF fusion	16.254620123203285	16:09	NA	common	16:09	PT_MPRBGGEJ_7316-2172_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_XWBMBWC6	EUR	NA	0	0	0.0306	0	0.9694	0.7569	11.9708	5.2201	10.2584	3.768	PT_JQ45JK94	Normal	C68388	Male	White	Not Hispanic or Latino	BS_41TD9XET	7316-222	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Hemispheric	Gross/Near total resection	2750	3149	LIVING	3149	Not Applicable	NA	NA	Low-grade glioma	8.621492128678987	8.621492128678987	NO EVENT	EUR	LGG, BRAF fusion	7.529089664613279	16:09	NA	common	16:09	PT_JQ45JK94_7316-222_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_Y6ZSGEPG	EUR	NA	0	0	0.0637	0	0.9363	1.1637	11.4966	5.4769	7.4984	3.9425	PT_TH18S0JQ	Normal	C829512	Female	White	Not Hispanic or Latino	BS_KH0NFCWF	7316-3068	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	4932	1680	LIVING	1680	Not Applicable	NA	NA	Low-grade glioma	4.59958932238193	4.59958932238193	NO EVENT	EUR	LGG, BRAF fusion	13.503080082135524	16:09	NA	common	16:09	PT_TH18S0JQ_7316-3068_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_YWHDJ7FE	EUR	NA	0	0	0.0424	0	0.9576	0.7185	12.176	3.2727	8.527	0.5399	PT_DEYCW197	Normal	C38991	Male	White	Not Hispanic or Latino	BS_6XP91JM2	7316-175	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Partial resection	3917	1482	LIVING	1482	Not Applicable	NA	NA	Low-grade glioma	4.057494866529774	4.057494866529774	NO EVENT	EUR	LGG, BRAF fusion	10.72416153319644	16:09	NA	common	16:09	PT_DEYCW197_7316-175_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_Z5JH1FMC	EUR	NA	0	0	0.0453	0	0.9547	0.8511	12.5254	4.7614	7.365	1.6427	PT_SJEG0MKD	Normal	C35916	Female	White	Not Hispanic or Latino	BS_JJZPY3BG	7316-146	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Posterior fossa	Gross/Near total resection	2396	483	LIVING	483	Not Applicable	NA	NA	Low-grade glioma	1.322381930184805	1.322381930184805	NO EVENT	EUR	LGG, BRAF fusion	6.5598904859685145	16:11	NA	common	16:11	PT_SJEG0MKD_7316-146_Solid Tissue_Initial CNS Tumor	PA_INF
+BS_ZMW21B7R	EUR	NA	0	0	0.0459	0	0.9541	2.7905	11.5171	6.1818	9.0414	1.4655	PT_XXZHRPNM	Normal	C663093	Male	White	Not Hispanic or Latino	BS_SMCPASF0	7316-2572	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Mixed	Partial resection	1667	2602	LIVING	1371	Progressive	1689	NA	Low-grade glioma	7.123887748117728	3.753593429158111	EVENT	EUR	LGG, BRAF fusion	4.563997262149213	15:09	NA	common	15:09	PT_XXZHRPNM_7316-2572_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_ZSAHMF4V	EUR	NA	0	0	0.0442	0	0.9558	-0.8768	12.1253	4.2524	7.9532	2.5912	PT_TEBD1SES	Normal	C808233	Male	White	Not Hispanic or Latino	BS_K3YT05M7	7316-3054	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Initial CNS Tumor	Optic pathway	Partial resection	1038	2363	LIVING	934	Progressive	1065	NA	Low-grade glioma	6.469541409993155	2.5571526351813825	EVENT	EUR	LGG, BRAF fusion	2.841889117043121	16:09	NA	common	16:09	PT_TEBD1SES_7316-3054_Solid Tissue_Initial CNS Tumor	PA_MID
+BS_8D40GRF9	EUR	NA	0	0	0.0625	0	0.9375	3.1701	11.2859	5.6108	8.1816	2.7069	PT_P9RT6693	Normal	C743289	Female	White	Not Hispanic or Latino	BS_P3KD5EQG	7316-2566	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Optic pathway	Partial resection	3260	800	LIVING	NA	Recurrence	NA	3308	Low-grade glioma	2.190280629705681	NA	EVENT	EUR	LGG, BRAF fusion	8.92539356605065	NA	15:11	rare	rare	PT_P9RT6693_7316-2566_Solid Tissue_Recurrence	PA_MID
+BS_9YHX7QFW	EUR	NA	0	0	0.0308	0	0.9692	1.8625	13.6441	6.3932	8.1324	1.4962	PT_2YT37G8P	Normal	C77613	Female	White	Not Hispanic or Latino	BS_ZJZFT0AJ	7316-2962	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Suprasellar	Partial resection	245	7504	LIVING	146	Progressive	1403	NA	Low-grade glioma	20.54483230663929	0.3997262149212868	EVENT	EUR	LGG, BRAF fusion	0.6707734428473648	NA	15:11	rare	rare	PT_2YT37G8P_7316-2962_Solid Tissue_Recurrence	PA_MID
+BS_DTYN7DX6	EUR	NA	0	0	0.0361	0	0.9639	1.1993	13.9341	4.1163	7.591	2.7302	PT_WGWMA5AZ	Normal	C36900	Male	White	Not Hispanic or Latino	BS_NEX92KQH	7316-148	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Recurrence	Posterior fossa	Gross/Near total resection	1853	7399	LIVING	4131	Recurrence	NA	NA	Low-grade glioma	20.257357973990416	11.31006160164271	EVENT	EUR	LGG, BRAF fusion	5.073237508555784	16:09	NA	common	16:09	PT_WGWMA5AZ_7316-148_Solid Tissue_Recurrence	NA
+BS_7SE2CXHP	EUR	NA	0	0	0.0639	0	0.9361	1.4724	10.6439	5.1184	8.0322	2.3881	PT_Q6CGR1G6	Normal	C2408217	Male	White	Not Hispanic or Latino	BS_6RZMWSV7	7316-4268	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Suprasellar	Partial resection	393	2579	LIVING	629	Progressive	413	NA	Low-grade glioma	7.060917180013689	1.7221081451060918	EVENT	EUR	LGG, BRAF fusion	1.0759753593429158	NA	13:11	rare	rare	PT_Q6CGR1G6_7316-4268_Solid Tissue_Progressive	NA
+BS_4NFWWRD8	AMR	NA	1e-4	1e-4	0.8691	6e-4	0.1301	3.9697	4.4515	5.6092	-0.349	0.0795	PT_3SF3NQ43	Normal	C2335032	Male	White	Hispanic or Latino	BS_04KM3N3S	7316-5288	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	1094	2380	LIVING	788	Progressive	NA	NA	Low-grade glioma	6.5160848733744015	2.1574264202600957	EVENT	non-EUR	LGG, BRAF fusion	2.9952087611225187	NA	13:09	rare	rare	PT_3SF3NQ43_7316-5288_Solid Tissue_Progressive	NA
+BS_8NPZJTP6	AMR	NA	0	0.0056	0.9943	0	1e-4	6.291	-1.9788	9.4436	-4.1457	0.8926	PT_WEY5N1C5	Normal	C2544993	Female	Reported Unknown	Hispanic or Latino	BS_TBWPXD8S	7316-5461	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1111	1804	LIVING	369	Progressive	NA	NA	Low-grade glioma	4.939082819986311	1.0102669404517457	EVENT	non-EUR	LGG, BRAF fusion	3.0417522245037647	16:09	NA	common	16:09	PT_WEY5N1C5_7316-5461_Solid Tissue_Progressive	NA
+BS_1X63PF0Q	EUR	NA	0	0	0.202	0	0.798	1.6281	7.9957	7.2297	4.0201	3.7807	PT_2V5GJG0F	Normal	C2639211	Male	White	Not Hispanic or Latino	BS_MXXN64DR	7316-6077	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4108	2529	LIVING	1638	Progressive	NA	NA	Low-grade glioma	6.924024640657084	4.484599589322382	EVENT	EUR	LGG, BRAF fusion	11.247091033538672	16:09	NA	common	16:09	PT_2V5GJG0F_7316-6077_Solid Tissue_Progressive	NA
+BS_A20FHTWX	EUR	NA	0	0	0.0673	0	0.9327	0.6547	10.4484	4.8147	7.1688	0.4039	PT_0H8VY9HP	Normal	C1077234	Male	White	Not Hispanic or Latino	BS_8Q0XYNY0	7316-4427	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4368	3765	LIVING	1009	Progressive	NA	NA	Low-grade glioma	10.30800821355236	2.7624914442162902	EVENT	EUR	LGG, BRAF fusion	11.958932238193018	16:09	NA	common	16:09	PT_0H8VY9HP_7316-4427_Solid Tissue_Progressive	NA
+BS_AZPVVXFS	EUR	NA	0	0	0.0445	0	0.9555	-0.3419	11.1166	6.1265	8.6477	3.9317	PT_AX5NM47X	Normal	C1173420	Male	White	Not Hispanic or Latino	BS_FBZBS9JR	7316-4683	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	696	839	LIVING	117	Progressive	NA	NA	Low-grade glioma	2.297056810403833	0.3203285420944558	EVENT	EUR	LGG, BRAF fusion	1.9055441478439423	15:09	NA	common	15:09	PT_AX5NM47X_7316-4683_Solid Tissue_Progressive	NA
+BS_KRYAZ09R	EUR	NA	0	0	0.0447	0	0.9553	1.696	10.7139	4.4816	9.6682	1.4552	PT_Y572BRC1	Normal	C136161	Male	White	Not Hispanic or Latino	BS_042DVDQM	7316-485	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	150	6239	LIVING	166	Progressive - Metastatic	156	NA	Low-grade glioma	17.08145106091718	0.4544832306639288	EVENT	EUR	LGG, BRAF fusion	0.4106776180698152	15:09	NA	common	15:09	PT_Y572BRC1_7316-485_Solid Tissue_Progressive	PA_MID
+BS_MKSMSB6J	SAS	NA	0	0	0	1	0	1.3982	-3.8329	-14.9364	-3.5957	2.918	PT_Q3EP24V1	Normal	C177366	Male	Reported Unknown	Not Hispanic or Latino	BS_235QEYMQ	7316-154	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Mixed	Partial resection	191	2798	DECEASED	1403	Progressive - Metastatic	540	NA	Low-grade glioma	7.660506502395619	3.8412046543463383	EVENT	non-EUR	LGG, BRAF fusion	0.5229295003422314	15:09	NA	common	15:09	PT_Q3EP24V1_7316-154_Solid Tissue_Progressive	PA_MID
+BS_S573YGV3	EUR	NA	0	0	0.0237	0	0.9763	0.2566	14.2499	7.2645	8.4311	2.048	PT_S3FJSBJT	Normal	C427548	Male	White	Not Hispanic or Latino	BS_X9PJ715R	7316-1794	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Midline	Partial resection	6156	355	LIVING	32	Progressive	NA	6257	Low-grade glioma	0.971937029431896	0.08761122518822724	EVENT	EUR	LGG, BRAF fusion	16.854209445585216	16:09	NA	common	16:09	PT_S3FJSBJT_7316-1794_Solid Tissue_Progressive	PA_INF
+BS_TKRHXGZQ	EUR	NA	0	0	0.0287	0	0.9713	0.0614	14.6094	4.7947	7.1773	2.9735	PT_XWVQW6JX	Normal	C883509	Male	White	Not Hispanic or Latino	BS_XBBBE8V2	7316-3556	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	4297	3449	LIVING	379	Progressive	NA	NA	Low-grade glioma	9.442847364818617	1.0376454483230664	EVENT	EUR	LGG, BRAF fusion	11.76454483230664	16:09	NA	common	16:09	PT_XWVQW6JX_7316-3556_Solid Tissue_Progressive	NA
+BS_TTZA89Y4	EUR	NA	0	0	0.0475	0	0.9525	0.9284	12.1952	4.9201	8.3711	3.3956	PT_2VSDT9CK	Normal	C916473	Female	White	Not Hispanic or Latino	BS_CQ8C6X4X	7316-3575	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1684	1027	LIVING	272	Progressive	NA	NA	Low-grade glioma	2.811772758384668	0.7446954140999316	EVENT	EUR	LGG, BRAF fusion	4.610540725530458	15:09	NA	common	15:09	PT_2VSDT9CK_7316-3575_Solid Tissue_Progressive	NA
+BS_VM2GYF7B	EUR	NA	0	0	0.0519	0	0.9481	-0.0163	12.312	3.9246	7.8973	3.7933	PT_XDV8W16W	Normal	C972192	Male	White	Not Hispanic or Latino	BS_AGGH3QGS	7316-3751	Low-grade astrocytic tumor	Low-grade glioma	LGG, KIAA1549-BRAF	Progressive	Posterior fossa	Gross/Near total resection	1923	3473	LIVING	3185	Progressive	NA	NA	Low-grade glioma	9.508555783709788	8.720054757015742	EVENT	EUR	LGG, BRAF fusion	5.2648870636550305	16:09	NA	common	16:09	PT_XDV8W16W_7316-3751_Solid Tissue_Progressive	PA_INF
diff --git a/analyses/braf-fusions/results/lgg-braf-fusion-common-breakpoint-freq.tsv b/analyses/braf-fusions/results/lgg-braf-fusion-common-breakpoint-freq.tsv
index 3a318114..3313f5ae 100644
--- a/analyses/braf-fusions/results/lgg-braf-fusion-common-breakpoint-freq.tsv
+++ b/analyses/braf-fusions/results/lgg-braf-fusion-common-breakpoint-freq.tsv
@@ -1,5 +1,5 @@
 breakpoint_exons_common	AFR	AMR	EAS	EUR	SAS	p
-15:9	4 (17.4%)	3 (14.3%)	2 (66.7%)	19 (17.4%)	3 (60%)	0.0367
+15:09	4 (17.4%)	3 (14.3%)	2 (66.7%)	19 (17.4%)	3 (60%)	0.0367
+16:09	15 (65.2%)	14 (66.7%)	1 (33.3%)	73 (67%)	1 (20%)	0.3274
 16:11	4 (17.4%)	3 (14.3%)	0	12 (11%)	1 (20%)	0.7113
-16:9	15 (65.2%)	14 (66.7%)	1 (33.3%)	73 (67%)	1 (20%)	0.3274
 18:10	0	1 (4.8%)	0	5 (4.6%)	0	0.8747

From 489e9dc6f3019d1fd644513e1cdfe856e980dccb Mon Sep 17 00:00:00 2001
From: Ryan Corbett 
Date: Tue, 16 Apr 2024 15:27:09 -0400
Subject: [PATCH 3/4] rerun survival with updated number formatting

---
 .../03-survival-by-braf-breakpoints.Rmd       |  10 +--
 .../03-survival-by-braf-breakpoints.html      |  59 +++++++-----------
 ..._add_breakpoint15_9_resection_ancestry.pdf | Bin 5256 -> 5249 bytes
 ..._add_breakpoint16_9_resection_ancestry.pdf | Bin 5240 -> 5251 bytes
 ...dd_resection_ancestry_breakpoint_group.pdf | Bin 5932 -> 5923 bytes
 ...add_resection_ancestry_breakpoint_type.pdf | Bin 5623 -> 5624 bytes
 ...est_efs_add_resection_breakpoint_group.pdf | Bin 5456 -> 5470 bytes
 ...rest_efs_add_resection_breakpoint_type.pdf | Bin 5156 -> 5163 bytes
 ...est_efs_int_resection_breakpoint_group.pdf | Bin 5532 -> 5555 bytes
 ...rest_efs_int_resection_breakpoint_type.pdf | Bin 5392 -> 5395 bytes
 ...ncestry_km_efs_15_9_predicted_ancestry.pdf | Bin 5853 -> 5853 bytes
 ...ncestry_km_efs_16_9_predicted_ancestry.pdf | Bin 6425 -> 6425 bytes
 .../pbta_ancestry_km_efs_breakpoint_group.pdf | Bin 7314 -> 7311 bytes
 .../pbta_ancestry_km_efs_breakpoint_type.pdf  | Bin 6771 -> 6771 bytes
 ...add_15_9_resection_ancestry_breakpoint.RDS | Bin 40124 -> 40092 bytes
 ...add_16_9_resection_ancestry_breakpoint.RDS | Bin 101140 -> 100820 bytes
 ...dd_resection_ancestry_breakpoint_group.RDS | Bin 163064 -> 162460 bytes
 ...add_resection_ancestry_breakpoint_type.RDS | Bin 160837 -> 160213 bytes
 ...raf_efs_add_resection_breakpoint_group.RDS | Bin 159096 -> 158492 bytes
 ...braf_efs_add_resection_breakpoint_type.RDS | Bin 159633 -> 159009 bytes
 ...raf_efs_int_resection_breakpoint_group.RDS | Bin 168436 -> 167860 bytes
 ...braf_efs_int_resection_breakpoint_type.RDS | Bin 161757 -> 161133 bytes
 22 files changed, 27 insertions(+), 42 deletions(-)

diff --git a/analyses/braf-fusions/03-survival-by-braf-breakpoints.Rmd b/analyses/braf-fusions/03-survival-by-braf-breakpoints.Rmd
index c3f74a52..47e80468 100644
--- a/analyses/braf-fusions/03-survival-by-braf-breakpoints.Rmd
+++ b/analyses/braf-fusions/03-survival-by-braf-breakpoints.Rmd
@@ -47,7 +47,7 @@ braf_hist <- braf_hist %>%
     TRUE ~ predicted_ancestry
   )) %>%
   dplyr::mutate(breakpoint_group = fct_relevel(breakpoint_group,
-                                               c("16:11", "15:9", "16:9", "18:10", "rare")))
+                                               c("16:11", "15:09", "16:09", "18:10", "rare")))
 ```
 
 Run Kaplan-Meier analysis of event-free survival by breakpoint type (common vs. rare)
@@ -101,7 +101,7 @@ Run Kaplan-Meier analysis of event-free survival by predicted ancestry among 16:
 
 ```{r}
 kap_efs_group <- survival_analysis(
-  metadata  = braf_hist[braf_hist$breakpoint_group == "16:9" & !braf_hist$predicted_ancestry %in% c("EAS", "SAS"),],
+  metadata  = braf_hist[braf_hist$breakpoint_group == "16:09" & !braf_hist$predicted_ancestry %in% c("EAS", "SAS"),],
   ind_var = "predicted_ancestry",
   test = "kap.meier",
   metadata_sample_col = "Kids_First_Biospecimen_ID", 
@@ -124,7 +124,7 @@ Run Kaplan-Meier analysis of event-free survival by predicted ancestry among 15:
 
 ```{r}
 kap_efs_group <- survival_analysis(
-  metadata  = braf_hist[braf_hist$breakpoint_group == "15:9",],
+  metadata  = braf_hist[braf_hist$breakpoint_group == "15:09",],
   ind_var = "AS_ancestry",
   test = "kap.meier",
   metadata_sample_col = "Kids_First_Biospecimen_ID", 
@@ -257,7 +257,7 @@ ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_ancestry_brea
 Run and plot cox proportional hazards model of EFS in 16:09 breakpoint patients, including tumor resection and predicted ancestry as covariates
 
 ```{r}
-braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "16:9",],
+braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "16:09",],
                                     terms = "extent_of_tumor_resection+predicted_ancestry",
                file.path(results_dir, "coxph_braf_efs_add_16_9_resection_ancestry_breakpoint.RDS"),
                "multivariate",
@@ -274,7 +274,7 @@ ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_breakpoint16_9_resectio
 Run and plot cox proportional hazards model of EFS in 15:09 breakpoint patients, including tumor resection and predicted ancestry as covariates
 
 ```{r}
-braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "15:9",],
+braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "15:09",],
                                     terms = "extent_of_tumor_resection+AS_ancestry",
                file.path(results_dir, "coxph_braf_efs_add_15_9_resection_ancestry_breakpoint.RDS"),
                "multivariate",
diff --git a/analyses/braf-fusions/03-survival-by-braf-breakpoints.html b/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
index 7ce3979d..c56083dd 100644
--- a/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
+++ b/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
@@ -431,12 +431,12 @@ 
2024

 
Load libraries and set directories

 
library(data.table)
 library(tidyverse)

-
## ── Attaching packages ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
+
## ── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
 ## ✔ ggplot2 3.4.0     ✔ purrr   1.0.1
 ## ✔ tibble  3.1.8     ✔ dplyr   1.1.0
 ## ✔ tidyr   1.3.0     ✔ stringr 1.5.0
 ## ✔ readr   2.1.3     ✔ forcats 1.0.0
-## ── Conflicts ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
+## ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
 ## ✖ dplyr::between()   masks data.table::between()
 ## ✖ dplyr::filter()    masks stats::filter()
 ## ✖ dplyr::first()     masks data.table::first()
@@ -468,12 +468,13 @@ 
2024

 breakpoint_type and breakpoint_group
 columns

 
braf_hist <- read_tsv(hist_file)

-
## Rows: 172 Columns: 48
-## ── Column specification ────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
+
## Rows: 172 Columns: 47
+## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
 ## Delimiter: "\t"
-## chr (29): Kids_First_Biospecimen_ID_normal, predicted_ancestry, Kids_First_P...
-## dbl (18): EAS_prob, AFR_prob, AMR_prob, SAS_prob, EUR_prob, PC1, PC2, PC3, P...
-## lgl  (1): given_ancestry
+## chr  (26): Kids_First_Biospecimen_ID_normal, predicted_ancestry, Kids_First_...
+## dbl  (18): EAS_prob, AFR_prob, AMR_prob, SAS_prob, EUR_prob, PC1, PC2, PC3, ...
+## lgl   (1): given_ancestry
+## time  (2): breakpoint_exons_common, breakpoint_exons_rare
 ## 
 ## ℹ Use `spec()` to retrieve the full column specification for this data.
 ## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

@@ -484,7 +485,7 @@ 
2024

     TRUE ~ predicted_ancestry
   )) %>%
   dplyr::mutate(breakpoint_group = fct_relevel(breakpoint_group,
-                                               c("16:11", "15:9", "16:9", "18:10", "rare")))

+                                               c("16:11", "15:09", "16:09", "18:10", "rare")))

 
Run Kaplan-Meier analysis of event-free survival by breakpoint type
 (common vs. rare)

 
kap_efs_type <- survival_analysis(
@@ -531,13 +532,13 @@ 
2024

                     title = "LGG, BRAF fusion")
 
 km_plot_group

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_km_efs_breakpoint_group.pdf"),
        width = 7.5, height = 5)

 
Run Kaplan-Meier analysis of event-free survival by predicted
 ancestry among 16:9 breakpoint pts

 
kap_efs_group <- survival_analysis(
-  metadata  = braf_hist[braf_hist$breakpoint_group == "16:9" & !braf_hist$predicted_ancestry %in% c("EAS", "SAS"),],
+  metadata  = braf_hist[braf_hist$breakpoint_group == "16:09" & !braf_hist$predicted_ancestry %in% c("EAS", "SAS"),],
   ind_var = "predicted_ancestry",
   test = "kap.meier",
   metadata_sample_col = "Kids_First_Biospecimen_ID", 
@@ -557,7 +558,7 @@ 
2024

 
Run Kaplan-Meier analysis of event-free survival by predicted
 ancestry among 15:9 breakpoint pts (combine asian ancestries here)

 
kap_efs_group <- survival_analysis(
-  metadata  = braf_hist[braf_hist$breakpoint_group == "15:9",],
+  metadata  = braf_hist[braf_hist$breakpoint_group == "15:09",],
   ind_var = "AS_ancestry",
   test = "kap.meier",
   metadata_sample_col = "Kids_First_Biospecimen_ID", 
@@ -585,13 +586,11 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_int_resection_breakpoint_type.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: The `guide` argument in `scale_*()` cannot be `FALSE`. This was deprecated in ggplot2 3.3.4.
 ## ℹ Please use "none" instead.

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_int_resection_breakpoint_type.pdf"),
        width = 8, height = 3)

 
Additive model:

@@ -603,11 +602,9 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_breakpoint_type.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_breakpoint_type.pdf"),
        width = 8, height = 3)

 
Re-run including predicted ancestry as covariate

@@ -625,11 +622,9 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_ancestry_breakpoint_type.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 3 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 3 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_ancestry_breakpoint_type.pdf"),
        width = 8, height = 4)

 
Run and plot cox proportional hazards model of EFS including tumor
@@ -644,12 +639,10 @@ 
2024

 
## Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
 ## Loglik converged before variable 2,4,8,9,14 ; coefficient may be infinite.

 
plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_int_resection_breakpoint_group.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Transformation introduced infinite values in continuous x-axis

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_int_resection_breakpoint_group.pdf"),
        width = 8, height = 3)

 
Additive model:

@@ -661,11 +654,9 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_breakpoint_group.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_breakpoint_group.pdf"),
        width = 8, height = 3)

 
Re-run with predicted ancestry as covariate

@@ -677,17 +668,15 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_ancestry_breakpoint_group.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 3 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 3 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_ancestry_breakpoint_group.pdf"),
        width = 8, height = 4)

 
Run and plot cox proportional hazards model of EFS in 16:09
 breakpoint patients, including tumor resection and predicted ancestry as
 covariates

-
braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "16:9",],
+
braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "16:09",],
                                     terms = "extent_of_tumor_resection+predicted_ancestry",
                file.path(results_dir, "coxph_braf_efs_add_16_9_resection_ancestry_breakpoint.RDS"),
                "multivariate",
@@ -695,17 +684,15 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_16_9_resection_ancestry_breakpoint.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_breakpoint16_9_resection_ancestry.pdf"),
        width = 8, height = 3)

 
Run and plot cox proportional hazards model of EFS in 15:09
 breakpoint patients, including tumor resection and predicted ancestry as
 covariates

-
braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "15:9",],
+
braf_model_efs <- fit_save_model(braf_hist[braf_hist$extent_of_tumor_resection != "Not Reported" & braf_hist$breakpoint_group == "15:09",],
                                     terms = "extent_of_tumor_resection+AS_ancestry",
                file.path(results_dir, "coxph_braf_efs_add_15_9_resection_ancestry_breakpoint.RDS"),
                "multivariate",
@@ -714,11 +701,9 @@ 
2024

 
## Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
 ## Loglik converged before variable 3 ; coefficient may be infinite.

 
plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_15_9_resection_ancestry_breakpoint.RDS")))

-
## Warning: attributes are not identical across measure variables; they will be
-## dropped

 
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_breakpoint15_9_resection_ancestry.pdf"),
        width = 8, height = 3)

 
Print session info

diff --git a/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_add_breakpoint15_9_resection_ancestry.pdf b/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_add_breakpoint15_9_resection_ancestry.pdf
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diff --git a/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_add_breakpoint16_9_resection_ancestry.pdf b/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_add_breakpoint16_9_resection_ancestry.pdf
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delta 1277
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delta 1653
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diff --git a/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_int_resection_breakpoint_type.pdf b/analyses/braf-fusions/plots/pbta_ancestry_forest_efs_int_resection_breakpoint_type.pdf
index 8965e3156f3d3b6b117a2f254a512f623f611713..07760b75dbf0cc7cf728ed69a09c8e412ae7cc6e 100644
GIT binary patch
delta 1512
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diff --git a/analyses/braf-fusions/plots/pbta_ancestry_km_efs_15_9_predicted_ancestry.pdf b/analyses/braf-fusions/plots/pbta_ancestry_km_efs_15_9_predicted_ancestry.pdf
index 7a9308878b6949d5a9bb46fb294facef75c37984..68b0f8e7380933dd9feb9b246831b03c59c57a22 100644
GIT binary patch
delta 47
wcmcbsdslaYnTm;_nW2TLsiA=;m%eX)ic4Zis)B}#m63swi2+P*V^p&k07NGY&j0`b

delta 47
wcmcbsdslaYnTnB-g`uILrHO$im%eX)ic4Zis)B}#m63swi2+P*V^p&k07Hii$p8QV

diff --git a/analyses/braf-fusions/plots/pbta_ancestry_km_efs_16_9_predicted_ancestry.pdf b/analyses/braf-fusions/plots/pbta_ancestry_km_efs_16_9_predicted_ancestry.pdf
index 876c95d35f2739f59569b04cd893c357efbf5c53..d409a4c30df604dc5d14c332d7605687482579de 100644
GIT binary patch
delta 48
wcmbPfG}CB;nW~AQnW2TLsey?mm%eX)ic4Zis)B}#m63swi2+=0WAr`=06HrS#sB~S

delta 48
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diff --git a/analyses/braf-fusions/plots/pbta_ancestry_km_efs_breakpoint_group.pdf b/analyses/braf-fusions/plots/pbta_ancestry_km_efs_breakpoint_group.pdf
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GIT binary patch
delta 883
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delta 882
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delta 1935
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diff --git a/analyses/braf-fusions/results/coxph_braf_efs_add_resection_ancestry_breakpoint_group.RDS b/analyses/braf-fusions/results/coxph_braf_efs_add_resection_ancestry_breakpoint_group.RDS
index 0a1c564ab26139cbd23244d155e98ef240133b62..9ce24332b60fc72144a5f71cded63d62c2a715a6 100644
GIT binary patch
delta 2075
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delta 2595
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diff --git a/analyses/braf-fusions/results/coxph_braf_efs_add_resection_breakpoint_group.RDS b/analyses/braf-fusions/results/coxph_braf_efs_add_resection_breakpoint_group.RDS
index f5cb623ba74cd64dc573ff2f7d26a824a7d3a0f2..e9d93f248ed0a10e2ebf6d4becfd07f23bbb3563 100644
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diff --git a/analyses/braf-fusions/results/coxph_braf_efs_int_resection_breakpoint_group.RDS b/analyses/braf-fusions/results/coxph_braf_efs_int_resection_breakpoint_group.RDS
index 1e9db23e213b5e7aa9aeba0530046d067fd6f200..41d4ab9b287a3b6df4ca7f167617411dfb9c45f9 100644
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diff --git a/analyses/braf-fusions/results/coxph_braf_efs_int_resection_breakpoint_type.RDS b/analyses/braf-fusions/results/coxph_braf_efs_int_resection_breakpoint_type.RDS
index c7582cee6bc0d0c610b01d7689c2b04f6f9e98c5..30d09346d946b42441000b0f49c369034c798f34 100644
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Date: Fri, 3 May 2024 13:37:32 -0400
Subject: [PATCH 4/4] fix braf fusion surv plots

---
 .../03-survival-by-braf-breakpoints.html      | 221 +++++++++---------
 ..._add_breakpoint15_9_resection_ancestry.pdf | Bin 5249 -> 5247 bytes
 ..._add_breakpoint16_9_resection_ancestry.pdf | Bin 5251 -> 5249 bytes
 ...dd_resection_ancestry_breakpoint_group.pdf | Bin 5923 -> 5921 bytes
 ...add_resection_ancestry_breakpoint_type.pdf | Bin 5624 -> 5621 bytes
 ...est_efs_add_resection_breakpoint_group.pdf | Bin 5470 -> 5470 bytes
 ...rest_efs_add_resection_breakpoint_type.pdf | Bin 5163 -> 5160 bytes
 ...est_efs_int_resection_breakpoint_group.pdf | Bin 5555 -> 5551 bytes
 ...rest_efs_int_resection_breakpoint_type.pdf | Bin 5395 -> 5393 bytes
 ...ncestry_km_efs_15_9_predicted_ancestry.pdf | Bin 5853 -> 5859 bytes
 ...ncestry_km_efs_16_9_predicted_ancestry.pdf | Bin 6425 -> 6429 bytes
 .../pbta_ancestry_km_efs_breakpoint_group.pdf | Bin 7311 -> 7321 bytes
 .../pbta_ancestry_km_efs_breakpoint_type.pdf  | Bin 6771 -> 6777 bytes
 ...add_15_9_resection_ancestry_breakpoint.RDS | Bin 40092 -> 40092 bytes
 ...add_16_9_resection_ancestry_breakpoint.RDS | Bin 100820 -> 100820 bytes
 ...dd_resection_ancestry_breakpoint_group.RDS | Bin 162460 -> 162460 bytes
 ...add_resection_ancestry_breakpoint_type.RDS | Bin 160213 -> 160213 bytes
 ...raf_efs_add_resection_breakpoint_group.RDS | Bin 158492 -> 158492 bytes
 ...braf_efs_add_resection_breakpoint_type.RDS | Bin 159009 -> 159009 bytes
 ...raf_efs_int_resection_breakpoint_group.RDS | Bin 167860 -> 167860 bytes
 ...braf_efs_int_resection_breakpoint_type.RDS | Bin 161133 -> 161133 bytes
 21 files changed, 112 insertions(+), 109 deletions(-)

diff --git a/analyses/braf-fusions/03-survival-by-braf-breakpoints.html b/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
index 6e85258a..79f3a9fa 100644
--- a/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
+++ b/analyses/braf-fusions/03-survival-by-braf-breakpoints.html
@@ -431,26 +431,31 @@ 
2024

 
Load libraries and set directories

 
library(data.table)
 library(tidyverse)

-<<<<<<< HEAD
-
## ── Attaching packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
-=======
-
## ── Attaching packages ─────────────────────────────────────────────────────────── tidyverse 1.3.2 ──
->>>>>>> rjcorb/65-format-survival-numbers
-## ✔ ggplot2 3.4.0     ✔ purrr   1.0.1
-## ✔ tibble  3.1.8     ✔ dplyr   1.1.0
-## ✔ tidyr   1.3.0     ✔ stringr 1.5.0
-## ✔ readr   2.1.3     ✔ forcats 1.0.0
-<<<<<<< HEAD
-## ── Conflicts ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
-=======
-## ── Conflicts ────────────────────────────────────────────────────────────── tidyverse_conflicts() ──
->>>>>>> rjcorb/65-format-survival-numbers
-## ✖ dplyr::between()   masks data.table::between()
-## ✖ dplyr::filter()    masks stats::filter()
-## ✖ dplyr::first()     masks data.table::first()
-## ✖ dplyr::lag()       masks stats::lag()
-## ✖ dplyr::last()      masks data.table::last()
-## ✖ purrr::transpose() masks data.table::transpose()

+
## -- Attaching core tidyverse packages ------------------------------------------------------------------------------------------------- tidyverse 2.0.0 --
+## v dplyr     1.1.4     v readr     2.1.5
+## v forcats   1.0.0     v stringr   1.5.1
+## v ggplot2   3.5.1     v tibble    3.2.1
+## v lubridate 1.9.3     v tidyr     1.3.1
+## v purrr     1.0.2     
+## -- Conflicts ------------------------------------------------------------------------------------------------------------------- tidyverse_conflicts() --
+## x dplyr::between()     masks data.table::between()
+## x dplyr::filter()      masks stats::filter()
+## x dplyr::first()       masks data.table::first()
+## x lubridate::hour()    masks data.table::hour()
+## x lubridate::isoweek() masks data.table::isoweek()
+## x dplyr::lag()         masks stats::lag()
+## x dplyr::last()        masks data.table::last()
+## x lubridate::mday()    masks data.table::mday()
+## x lubridate::minute()  masks data.table::minute()
+## x lubridate::month()   masks data.table::month()
+## x lubridate::quarter() masks data.table::quarter()
+## x lubridate::second()  masks data.table::second()
+## x purrr::transpose()   masks data.table::transpose()
+## x lubridate::wday()    masks data.table::wday()
+## x lubridate::week()    masks data.table::week()
+## x lubridate::yday()    masks data.table::yday()
+## x lubridate::year()    masks data.table::year()
+## i Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors

 
library(survival)
 library(patchwork)
 
@@ -476,21 +481,16 @@ 
2024

 breakpoint_type and breakpoint_group
 columns

 
braf_hist <- read_tsv(hist_file)

-<<<<<<< HEAD
 
## Rows: 172 Columns: 47
-## ── Column specification ─────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
-=======
-
## Rows: 172 Columns: 48
-## ── Column specification ────────────────────────────────────────────────────────────────────────────
->>>>>>> rjcorb/65-format-survival-numbers
+## -- Column specification ---------------------------------------------------------------------------------------------------------------------------------
 ## Delimiter: "\t"
 ## chr  (26): Kids_First_Biospecimen_ID_normal, predicted_ancestry, Kids_First_...
 ## dbl  (18): EAS_prob, AFR_prob, AMR_prob, SAS_prob, EUR_prob, PC1, PC2, PC3, ...
 ## lgl   (1): given_ancestry
 ## time  (2): breakpoint_exons_common, breakpoint_exons_rare
 ## 
-## ℹ Use `spec()` to retrieve the full column specification for this data.
-## ℹ Specify the column types or set `show_col_types = FALSE` to quiet this message.

+## i Use `spec()` to retrieve the full column specification for this data.
+## i Specify the column types or set `show_col_types = FALSE` to quiet this message.

 
braf_hist <- braf_hist %>%
   # Because we noticed different breakpoint frequencies in Asian vs. other ancestries, we will define a column that merges asian ancestries and retain other predicted ancestries
   dplyr::mutate(AS_ancestry = case_when(
@@ -510,14 +510,16 @@ 
2024

   status_col = "EFS_status"
   )

 
## Warning: Using an external vector in selections was deprecated in tidyselect 1.1.0.
-## ℹ Please use `all_of()` or `any_of()` instead.
+## i Please use `all_of()` or `any_of()` instead.
 ##   # Was:
 ##   data %>% select(ind_var)
 ## 
 ##   # Now:
 ##   data %>% select(all_of(ind_var))
 ## 
-## See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.

+## See <https://tidyselect.r-lib.org/reference/faq-external-vector.html>.
+## This warning is displayed once every 8 hours.
+## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.

 
## Testing model: survival::Surv(EFS_days, EFS_status) ~ breakpoint_type with kap.meier

 
km_plot_type <- plotKM(model = kap_efs_type,
                     variable = "breakpoint_type",
@@ -525,7 +527,7 @@ 
2024

                     title = "LGG, BRAF fusion")
 
 km_plot_type

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_km_efs_breakpoint_type.pdf"),
        width = 7.5, height = 5)

 
Run Kaplan-Meier analysis of event-free survival by breakpoint
@@ -545,11 +547,7 @@ 
2024

                     title = "LGG, BRAF fusion")
 
 km_plot_group

-<<<<<<< HEAD
-

-=======
-

->>>>>>> rjcorb/65-format-survival-numbers
+

 
ggsave(file.path(plot_dir, "pbta_ancestry_km_efs_breakpoint_group.pdf"),
        width = 7.5, height = 5)

 
Run Kaplan-Meier analysis of event-free survival by predicted
@@ -569,7 +567,7 @@ 
2024

                     title = "LGG, BRAF fusion, breakpoint 16:09")
 
 km_plot_group

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_km_efs_16_9_predicted_ancestry.pdf"),
        width = 7.5, height = 5)

 
Run Kaplan-Meier analysis of event-free survival by predicted
@@ -589,7 +587,7 @@ 
2024

                     title = "LGG, BRAF fusion, breakpoint 15:09")
 
 km_plot_group

-

+

 
ggsave(file.path(plot_dir, "pbta_ancestry_km_efs_15_9_predicted_ancestry.pdf"),
        width = 7.5, height = 5)

 
Run and plot cox proportional hazards model of EFS including tumor
@@ -603,11 +601,15 @@ 
2024

               )
 
 plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_int_resection_breakpoint_type.RDS")))

-
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).

 
## Warning: The `guide` argument in `scale_*()` cannot be `FALSE`. This was deprecated in ggplot2 3.3.4.
-## ℹ Please use "none" instead.

-
## Warning: Removed 2 rows containing missing values (`geom_text()`).

-

+## i Please use "none" instead.
+## This warning is displayed once every 8 hours.
+## Call `lifecycle::last_lifecycle_warnings()` to see where this warning was generated.
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_int_resection_breakpoint_type.pdf"),
        width = 8, height = 3)

Additive model:

@@ -619,9 +621,11 @@

2024

) plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_breakpoint_type.RDS"))) -
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 2 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_breakpoint_type.pdf"),
        width = 8, height = 3)

Re-run including predicted ancestry as covariate

@@ -639,9 +643,11 @@

2024

) plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_ancestry_breakpoint_type.RDS"))) -
## Warning: Removed 3 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 3 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 3 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 3 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_ancestry_breakpoint_type.pdf"),
        width = 8, height = 4)

Run and plot cox proportional hazards model of EFS including tumor @@ -656,10 +662,12 @@

2024

## Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
 ## Loglik converged before variable 2,4,8,9,14 ; coefficient may be infinite.
plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_int_resection_breakpoint_group.RDS")))
-
## Warning: Transformation introduced infinite values in continuous x-axis
-
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 2 rows containing missing values (`geom_text()`).
-

+
## Warning in scale_x_log10(): log-10 transformation introduced infinite values.
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_int_resection_breakpoint_group.pdf"),
        width = 8, height = 3)

Additive model:

@@ -671,9 +679,11 @@

2024

) plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_breakpoint_group.RDS"))) -
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 2 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_breakpoint_group.pdf"),
        width = 8, height = 3)

Re-run with predicted ancestry as covariate

@@ -685,9 +695,11 @@

2024

) plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_resection_ancestry_breakpoint_group.RDS"))) -
## Warning: Removed 3 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 3 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 3 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 3 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_resection_ancestry_breakpoint_group.pdf"),
        width = 8, height = 4)

Run and plot cox proportional hazards model of EFS in 16:09 @@ -701,9 +713,11 @@

2024

) plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_16_9_resection_ancestry_breakpoint.RDS"))) -
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 2 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_breakpoint16_9_resection_ancestry.pdf"),
        width = 8, height = 3)

Run and plot cox proportional hazards model of EFS in 15:09 @@ -718,69 +732,58 @@

2024

## Warning in coxph.fit(X, Y, istrat, offset, init, control, weights = weights, :
 ## Loglik converged before variable 3 ; coefficient may be infinite.
plotForest(readRDS(file.path(results_dir, "coxph_braf_efs_add_15_9_resection_ancestry_breakpoint.RDS")))
-
## Warning: Removed 2 rows containing missing values (`geom_errorbarh()`).
-
## Warning: Removed 2 rows containing missing values (`geom_text()`).
-

+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_errorbarh()`).
+
## Warning: Removed 2 rows containing missing values or values outside the scale
+## range (`geom_text()`).
+

ggsave(file.path(plot_dir, "pbta_ancestry_forest_efs_add_breakpoint15_9_resection_ancestry.pdf"),
        width = 8, height = 3)

Print session info

sessionInfo()
-
## R version 4.2.2 (2022-10-31)
-## Platform: x86_64-pc-linux-gnu (64-bit)
-## Running under: Ubuntu 22.04.1 LTS
+
## R version 4.4.0 (2024-04-24)
+## Platform: x86_64-pc-linux-gnu
+## Running under: Ubuntu 22.04.4 LTS
 ## 
 ## Matrix products: default
-## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3
-## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so
+## BLAS:   /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 
+## LAPACK: /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblasp-r0.3.20.so;  LAPACK version 3.10.0
 ## 
 ## locale:
-##  [1] LC_CTYPE=en_US.UTF-8       LC_NUMERIC=C              
-##  [3] LC_TIME=en_US.UTF-8        LC_COLLATE=en_US.UTF-8    
-##  [5] LC_MONETARY=en_US.UTF-8    LC_MESSAGES=en_US.UTF-8   
-##  [7] LC_PAPER=en_US.UTF-8       LC_NAME=C                 
-##  [9] LC_ADDRESS=C               LC_TELEPHONE=C            
-## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C       
+## [1] C
+## 
+## time zone: Etc/UTC
+## tzcode source: system (glibc)
 ## 
 ## attached base packages:
 ## [1] stats     graphics  grDevices utils     datasets  methods   base     
 ## 
 ## other attached packages:
-##  [1] survminer_0.4.9   ggpubr_0.6.0      patchwork_1.0.0   survival_3.5-7   
-##  [5] forcats_1.0.0     stringr_1.5.0     dplyr_1.1.0       purrr_1.0.1      
-##  [9] readr_2.1.3       tidyr_1.3.0       tibble_3.1.8      ggplot2_3.4.0    
-## [13] tidyverse_1.3.2   data.table_1.15.0
+##  [1] survminer_0.4.9   ggpubr_0.6.0      patchwork_1.2.0   survival_3.6-4   
+##  [5] lubridate_1.9.3   forcats_1.0.0     stringr_1.5.1     dplyr_1.1.4      
+##  [9] purrr_1.0.2       readr_2.1.5       tidyr_1.3.1       tibble_3.2.1     
+## [13] ggplot2_3.5.1     tidyverse_2.0.0   data.table_1.15.4
 ## 
 ## loaded via a namespace (and not attached):
-##  [1] ggtext_0.1.2        fs_1.6.0            lubridate_1.9.1    
-##  [4] bit64_4.0.5         httr_1.4.4          rprojroot_2.0.3    
-##  [7] tools_4.2.2         backports_1.4.1     bslib_0.4.2        
-## [10] utf8_1.2.3          R6_2.5.1            DBI_1.1.3          
-## [13] colorspace_2.1-0    withr_2.5.0         tidyselect_1.2.0   
-## [16] gridExtra_2.3       bit_4.0.5           compiler_4.2.2     
-## [19] textshaping_0.3.6   cli_3.6.0           rvest_1.0.3        
-## [22] xml2_1.3.3          labeling_0.4.2      sass_0.4.5         
-## [25] scales_1.2.1        survMisc_0.5.6      systemfonts_1.0.4  
-## [28] commonmark_1.9.1    digest_0.6.31       rmarkdown_2.20     
-## [31] pkgconfig_2.0.3     htmltools_0.5.4     highr_0.10         
-## [34] dbplyr_2.3.0        fastmap_1.1.0       rlang_1.0.6        
-## [37] readxl_1.4.1        jquerylib_0.1.4     generics_0.1.3     
-## [40] farver_2.1.1        zoo_1.8-12          jsonlite_1.8.4     
-## [43] vroom_1.6.1         car_3.1-2           googlesheets4_1.0.1
-## [46] magrittr_2.0.3      Matrix_1.6-5        Rcpp_1.0.10        
-## [49] munsell_0.5.0       fansi_1.0.4         abind_1.4-5        
-## [52] lifecycle_1.0.3     stringi_1.7.12      yaml_2.3.7         
-## [55] carData_3.0-5       grid_4.2.2          parallel_4.2.2     
-## [58] crayon_1.5.2        lattice_0.20-45     haven_2.5.1        
-## [61] cowplot_1.1.3       splines_4.2.2       gridtext_0.1.5     
-## [64] hms_1.1.2           knitr_1.42          pillar_1.8.1       
-## [67] markdown_1.12       ggsignif_0.6.4      reprex_2.0.2       
-## [70] glue_1.6.2          evaluate_0.20       modelr_0.1.10      
-## [73] colorblindr_0.1.0   vctrs_0.5.2         tzdb_0.3.0         
-## [76] cellranger_1.1.0    gtable_0.3.1        km.ci_0.5-6        
-## [79] assertthat_0.2.1    cachem_1.0.6        xfun_0.42          
-## [82] xtable_1.8-4        broom_1.0.3         rstatix_0.7.2      
-## [85] ragg_1.2.5          googledrive_2.0.0   gargle_1.3.0       
-## [88] KMsurv_0.1-5        timechange_0.2.0    ellipsis_0.3.2

+##  [1] gtable_0.3.5      xfun_0.43         bslib_0.7.0       rstatix_0.7.2    
+##  [5] lattice_0.22-6    tzdb_0.4.0        vctrs_0.6.5       tools_4.4.0      
+##  [9] generics_0.1.3    parallel_4.4.0    fansi_1.0.6       highr_0.10       
+## [13] pkgconfig_2.0.3   Matrix_1.7-0      lifecycle_1.0.4   farver_2.1.1     
+## [17] compiler_4.4.0    textshaping_0.3.7 munsell_0.5.1     carData_3.0-5    
+## [21] colorblindr_0.1.0 htmltools_0.5.8.1 sass_0.4.9        yaml_2.3.8       
+## [25] crayon_1.5.2      pillar_1.9.0      car_3.1-2         jquerylib_0.1.4  
+## [29] cachem_1.0.8      abind_1.4-5       km.ci_0.5-6       commonmark_1.9.1 
+## [33] tidyselect_1.2.1  digest_0.6.35     stringi_1.8.3     labeling_0.4.3   
+## [37] splines_4.4.0     cowplot_1.1.3     rprojroot_2.0.4   fastmap_1.1.1    
+## [41] grid_4.4.0        colorspace_2.1-0  cli_3.6.2         magrittr_2.0.3   
+## [45] utf8_1.2.4        broom_1.0.5       withr_3.0.0       scales_1.3.0     
+## [49] backports_1.4.1   bit64_4.0.5       timechange_0.3.0  rmarkdown_2.26   
+## [53] ggtext_0.1.2      bit_4.0.5         gridExtra_2.3     ggsignif_0.6.4   
+## [57] ragg_1.3.0        zoo_1.8-12        hms_1.1.3         evaluate_0.23    
+## [61] knitr_1.46        KMsurv_0.1-5      markdown_1.12     survMisc_0.5.6   
+## [65] rlang_1.1.3       Rcpp_1.0.12       gridtext_0.1.5    xtable_1.8-4     
+## [69] glue_1.7.0        xml2_1.3.6        vroom_1.6.5       jsonlite_1.8.8   
+## [73] R6_2.5.1          systemfonts_1.0.6
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