From 9404ed305cb0ec103b095fbe060aacf8e31ac7ac Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Mikl=C3=B3s=20Homolya?= Date: Thu, 12 Jul 2018 21:19:31 +0200 Subject: [PATCH] initial strip --- .binstar.yml | 13 --- .travis.yml | 6 -- LICENSE | 6 +- condarecipe/build.sh | 3 - condarecipe/meta.yaml | 32 ------ doc/Makefile | 157 --------------------------- doc/source/coffee.rst | 67 ------------ doc/source/conf.py | 245 ------------------------------------------ doc/source/index.rst | 22 ---- requirements.txt | 3 - setup.cfg | 8 +- setup.py | 5 +- 12 files changed, 6 insertions(+), 561 deletions(-) delete mode 100644 .binstar.yml delete mode 100755 condarecipe/build.sh delete mode 100644 condarecipe/meta.yaml delete mode 100644 doc/Makefile delete mode 100644 doc/source/coffee.rst delete mode 100644 doc/source/conf.py delete mode 100644 doc/source/index.rst diff --git a/.binstar.yml b/.binstar.yml deleted file mode 100644 index cc8b820d..00000000 --- a/.binstar.yml +++ /dev/null @@ -1,13 +0,0 @@ -package: coffee -user: firedrakeproject - -platform: - - linux-64 - -engine: - - python=2.7 - -script: - - conda build -q condarecipe - -build_targets: conda diff --git a/.travis.yml b/.travis.yml index 9aa92939..12c3ed06 100644 --- a/.travis.yml +++ b/.travis.yml @@ -5,15 +5,9 @@ language: python python: - "3.5" -addons: - apt: - packages: - - glpk-utils - before_install: - pip install -r requirements.txt - pip install flake8 - - pip install flake8-future-import install: - python setup.py install diff --git a/LICENSE b/LICENSE index 71fd8745..d2896c52 100644 --- a/LICENSE +++ b/LICENSE @@ -1,6 +1,6 @@ -Copyright (c) 2012, Imperial College London and others. Please see the -AUTHORS file in the main source directory for a full list of copyright -holders. All rights reserved. +Copyright (c) 2012-2018, Imperial College London and others. +Please see the AUTHORS file in the main source directory for a full +list of copyright holders. All rights reserved. Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: diff --git a/condarecipe/build.sh b/condarecipe/build.sh deleted file mode 100755 index 8e25a145..00000000 --- a/condarecipe/build.sh +++ /dev/null @@ -1,3 +0,0 @@ -#!/bin/bash - -$PYTHON setup.py install diff --git a/condarecipe/meta.yaml b/condarecipe/meta.yaml deleted file mode 100644 index 9087211a..00000000 --- a/condarecipe/meta.yaml +++ /dev/null @@ -1,32 +0,0 @@ -package: - name: coffee - version: {{ environ.get('GIT_DESCRIBE_TAG','') }} - -source: - path: .. - -build: - number: {{ environ.get('GIT_DESCRIBE_NUMBER', 0) }} - -requirements: - build: - - python - - networkx - - run: - - python - - numpy - - networkx - -test: - requires: - - pytest - - flake8 - commands: - - py.test {{ os.path.join(environ.get('SRC_DIR'), 'tests') }} -v - - flake8 {{ environ.get('SRC_DIR') }} - -about: - home: http://www.firedrakeproject.org - license: BSD 3-clause - summary: COFFEE - COmpiler For Fast Expression Evaluation diff --git a/doc/Makefile b/doc/Makefile deleted file mode 100644 index 7e27156b..00000000 --- a/doc/Makefile +++ /dev/null @@ -1,157 +0,0 @@ -# Makefile for Sphinx documentation -# - -# You can set these variables from the command line. -APIDOCOPTS = -f -SPHINXOPTS = -SPHINXBUILD = sphinx-build -PAPER = -BUILDDIR = build - -# Internal variables. -PAPEROPT_a4 = -D latex_paper_size=a4 -PAPEROPT_letter = -D latex_paper_size=letter -ALLSPHINXOPTS = -d $(BUILDDIR)/doctrees $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source -# the i18n builder cannot share the environment and doctrees with the others -I18NSPHINXOPTS = $(PAPEROPT_$(PAPER)) $(SPHINXOPTS) source - -.PHONY: help clean html dirhtml singlehtml pickle json htmlhelp qthelp devhelp epub latex latexpdf text man changes linkcheck doctest gettext - -help: - @echo "Please use \`make ' where is one of" - @echo " html to make standalone HTML files" - @echo " dirhtml to make HTML files named index.html in directories" - @echo " singlehtml to make a single large HTML file" - @echo " pickle to make pickle files" - @echo " json to make JSON files" - @echo " htmlhelp to make HTML files and a HTML help project" - @echo " qthelp to make HTML files and a qthelp project" - @echo " devhelp to make HTML files and a Devhelp project" - @echo " epub to make an epub" - @echo " latex to make LaTeX files, you can set PAPER=a4 or PAPER=letter" - @echo " latexpdf to make LaTeX files and run them through pdflatex" - @echo " text to make text files" - @echo " man to make manual pages" - @echo " texinfo to make Texinfo files" - @echo " info to make Texinfo files and run them through makeinfo" - @echo " gettext to make PO message catalogs" - @echo " changes to make an overview of all changed/added/deprecated items" - @echo " linkcheck to check all external links for integrity" - @echo " doctest to run all doctests embedded in the documentation (if enabled)" - -apidoc: - sphinx-apidoc ../coffee -o source/ -T $(APIDOCOPTS) - -clean: - -rm -rf $(BUILDDIR)/* - -html: apidoc - $(SPHINXBUILD) -b html $(ALLSPHINXOPTS) $(BUILDDIR)/html - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/html." - -dirhtml: apidoc - $(SPHINXBUILD) -b dirhtml $(ALLSPHINXOPTS) $(BUILDDIR)/dirhtml - @echo - @echo "Build finished. The HTML pages are in $(BUILDDIR)/dirhtml." - -singlehtml: apidoc - $(SPHINXBUILD) -b singlehtml $(ALLSPHINXOPTS) $(BUILDDIR)/singlehtml - @echo - @echo "Build finished. The HTML page is in $(BUILDDIR)/singlehtml." - -pickle: apidoc - $(SPHINXBUILD) -b pickle $(ALLSPHINXOPTS) $(BUILDDIR)/pickle - @echo - @echo "Build finished; now you can process the pickle files." - -json: apidoc - $(SPHINXBUILD) -b json $(ALLSPHINXOPTS) $(BUILDDIR)/json - @echo - @echo "Build finished; now you can process the JSON files." - -htmlhelp: apidoc - $(SPHINXBUILD) -b htmlhelp $(ALLSPHINXOPTS) $(BUILDDIR)/htmlhelp - @echo - @echo "Build finished; now you can run HTML Help Workshop with the" \ - ".hhp project file in $(BUILDDIR)/htmlhelp." - -qthelp: apidoc - $(SPHINXBUILD) -b qthelp $(ALLSPHINXOPTS) $(BUILDDIR)/qthelp - @echo - @echo "Build finished; now you can run "qcollectiongenerator" with the" \ - ".qhcp project file in $(BUILDDIR)/qthelp, like this:" - @echo "# qcollectiongenerator $(BUILDDIR)/qthelp/COFFEE.qhcp" - @echo "To view the help file:" - @echo "# assistant -collectionFile $(BUILDDIR)/qthelp/COFFEE.qhc" - -devhelp: apidoc - $(SPHINXBUILD) -b devhelp $(ALLSPHINXOPTS) $(BUILDDIR)/devhelp - @echo - @echo "Build finished." - @echo "To view the help file:" - @echo "# mkdir -p $$HOME/.local/share/devhelp/COFFEE" - @echo "# ln -s $(BUILDDIR)/devhelp $$HOME/.local/share/devhelp/COFFEE" - @echo "# devhelp" - -epub: apidoc - $(SPHINXBUILD) -b epub $(ALLSPHINXOPTS) $(BUILDDIR)/epub - @echo - @echo "Build finished. The epub file is in $(BUILDDIR)/epub." - -latex: apidoc - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo - @echo "Build finished; the LaTeX files are in $(BUILDDIR)/latex." - @echo "Run \`make' in that directory to run these through (pdf)latex" \ - "(use \`make latexpdf' here to do that automatically)." - -latexpdf: apidoc - $(SPHINXBUILD) -b latex $(ALLSPHINXOPTS) $(BUILDDIR)/latex - @echo "Running LaTeX files through pdflatex..." - $(MAKE) -C $(BUILDDIR)/latex all-pdf - @echo "pdflatex finished; the PDF files are in $(BUILDDIR)/latex." - -text: apidoc - $(SPHINXBUILD) -b text $(ALLSPHINXOPTS) $(BUILDDIR)/text - @echo - @echo "Build finished. The text files are in $(BUILDDIR)/text." - -man: apidoc - $(SPHINXBUILD) -b man $(ALLSPHINXOPTS) $(BUILDDIR)/man - @echo - @echo "Build finished. The manual pages are in $(BUILDDIR)/man." - -texinfo: apidoc - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo - @echo "Build finished. The Texinfo files are in $(BUILDDIR)/texinfo." - @echo "Run \`make' in that directory to run these through makeinfo" \ - "(use \`make info' here to do that automatically)." - -info: apidoc - $(SPHINXBUILD) -b texinfo $(ALLSPHINXOPTS) $(BUILDDIR)/texinfo - @echo "Running Texinfo files through makeinfo..." - make -C $(BUILDDIR)/texinfo info - @echo "makeinfo finished; the Info files are in $(BUILDDIR)/texinfo." - -gettext: apidoc - $(SPHINXBUILD) -b gettext $(I18NSPHINXOPTS) $(BUILDDIR)/locale - @echo - @echo "Build finished. The message catalogs are in $(BUILDDIR)/locale." - -changes: apidoc - $(SPHINXBUILD) -b changes $(ALLSPHINXOPTS) $(BUILDDIR)/changes - @echo - @echo "The overview file is in $(BUILDDIR)/changes." - -linkcheck: apidoc - $(SPHINXBUILD) -b linkcheck $(ALLSPHINXOPTS) $(BUILDDIR)/linkcheck - @echo - @echo "Link check complete; look for any errors in the above output " \ - "or in $(BUILDDIR)/linkcheck/output.txt." - -doctest: apidoc - $(SPHINXBUILD) -b doctest $(ALLSPHINXOPTS) $(BUILDDIR)/doctest - @echo "Testing of doctests in the sources finished, look at the " \ - "results in $(BUILDDIR)/doctest/output.txt." diff --git a/doc/source/coffee.rst b/doc/source/coffee.rst deleted file mode 100644 index 966e827e..00000000 --- a/doc/source/coffee.rst +++ /dev/null @@ -1,67 +0,0 @@ -coffee Package -============== - -:mod:`autotuner` Module ------------------------ - -.. automodule:: coffee.autotuner - :members: - :undoc-members: - :show-inheritance: - -:mod:`base` Module ------------------- - -.. automodule:: coffee.base - :members: - :undoc-members: - :show-inheritance: - -:mod:`linear_algebra` Module ----------------------------- - -.. automodule:: coffee.linear_algebra - :members: - :undoc-members: - :show-inheritance: - -:mod:`optimizer` Module ------------------------ - -.. automodule:: coffee.optimizer - :members: - :undoc-members: - :show-inheritance: - -:mod:`plan` Module ------------------- - -.. automodule:: coffee.plan - :members: - :undoc-members: - :show-inheritance: - -:mod:`utils` Module -------------------- - -.. automodule:: coffee.utils - :members: - :undoc-members: - :show-inheritance: - -:mod:`vectorizer` Module ------------------------- - -.. automodule:: coffee.vectorizer - :members: - :undoc-members: - :show-inheritance: - -:mod:`version` Module ---------------------- - -.. automodule:: coffee.version - :members: - :undoc-members: - :show-inheritance: - diff --git a/doc/source/conf.py b/doc/source/conf.py deleted file mode 100644 index 11ed384e..00000000 --- a/doc/source/conf.py +++ /dev/null @@ -1,245 +0,0 @@ -# -*- coding: utf-8 -*- -# -# COFFEE documentation build configuration file, created by -# sphinx-quickstart on Tue Sep 30 11:25:59 2014. -# -# This file is execfile()d with the current directory set to its containing dir. -# -# Note that not all possible configuration values are present in this -# autogenerated file. -# -# All configuration values have a default; values that are commented out -# serve to show the default. - -import sys -import os - -# If extensions (or modules to document with autodoc) are in another directory, -# add these directories to sys.path here. If the directory is relative to the -# documentation root, use os.path.abspath to make it absolute, like shown here. -#sys.path.insert(0, os.path.abspath('.')) -sys.path.insert(0, os.path.abspath('../..')) - -# -- General configuration ----------------------------------------------------- - -# If your documentation needs a minimal Sphinx version, state it here. -#needs_sphinx = '1.0' - -# Add any Sphinx extension module names here, as strings. They can be extensions -# coming with Sphinx (named 'sphinx.ext.*') or your custom ones. -extensions = ['sphinx.ext.autodoc'] - -# Add any paths that contain templates here, relative to this directory. -templates_path = ['_templates'] - -# The suffix of source filenames. -source_suffix = '.rst' - -# The encoding of source files. -#source_encoding = 'utf-8-sig' - -# The master toctree document. -master_doc = 'index' - -# General information about the project. -project = u'COFFEE' -copyright = u'2014, Fabio Luporini' - -# The version info for the project you're documenting, acts as replacement for -# |version| and |release|, also used in various other places throughout the -# built documents. -# -# The short X.Y version. -execfile("../../coffee/version.py") -version = '%d.%d' % __version_info__[0:2] # noqa: pulled from coffee/version.py -# The full version, including alpha/beta/rc tags. -release = __version__ # noqa: pulled from coffee/version.py - -# The language for content autogenerated by Sphinx. Refer to documentation -# for a list of supported languages. -#language = None - -# There are two options for replacing |today|: either, you set today to some -# non-false value, then it is used: -#today = '' -# Else, today_fmt is used as the format for a strftime call. -#today_fmt = '%B %d, %Y' - -# List of patterns, relative to source directory, that match files and -# directories to ignore when looking for source files. -exclude_patterns = [] - -# The reST default role (used for this markup: `text`) to use for all documents. -#default_role = None - -# If true, '()' will be appended to :func: etc. cross-reference text. -#add_function_parentheses = True - -# If true, the current module name will be prepended to all description -# unit titles (such as .. function::). -#add_module_names = True - -# If true, sectionauthor and moduleauthor directives will be shown in the -# output. They are ignored by default. -#show_authors = False - -# The name of the Pygments (syntax highlighting) style to use. -pygments_style = 'sphinx' - -# A list of ignored prefixes for module index sorting. -#modindex_common_prefix = [] - - -# -- Options for HTML output --------------------------------------------------- - -# The theme to use for HTML and HTML Help pages. See the documentation for -# a list of builtin themes. -html_theme = 'default' - -# Theme options are theme-specific and customize the look and feel of a theme -# further. For a list of options available for each theme, see the -# documentation. -#html_theme_options = {} - -# Add any paths that contain custom themes here, relative to this directory. -#html_theme_path = [] - -# The name for this set of Sphinx documents. If None, it defaults to -# " v documentation". -#html_title = None - -# A shorter title for the navigation bar. Default is the same as html_title. -#html_short_title = None - -# The name of an image file (relative to this directory) to place at the top -# of the sidebar. -#html_logo = None - -# The name of an image file (within the static path) to use as favicon of the -# docs. This file should be a Windows icon file (.ico) being 16x16 or 32x32 -# pixels large. -#html_favicon = None - -# Add any paths that contain custom static files (such as style sheets) here, -# relative to this directory. They are copied after the builtin static files, -# so a file named "default.css" will overwrite the builtin "default.css". -html_static_path = ['_static'] - -# If not '', a 'Last updated on:' timestamp is inserted at every page bottom, -# using the given strftime format. -#html_last_updated_fmt = '%b %d, %Y' - -# If true, SmartyPants will be used to convert quotes and dashes to -# typographically correct entities. -#html_use_smartypants = True - -# Custom sidebar templates, maps document names to template names. -#html_sidebars = {} - -# Additional templates that should be rendered to pages, maps page names to -# template names. -#html_additional_pages = {} - -# If false, no module index is generated. -#html_domain_indices = True - -# If false, no index is generated. -#html_use_index = True - -# If true, the index is split into individual pages for each letter. -#html_split_index = False - -# If true, links to the reST sources are added to the pages. -#html_show_sourcelink = True - -# If true, "Created using Sphinx" is shown in the HTML footer. Default is True. -#html_show_sphinx = True - -# If true, "(C) Copyright ..." is shown in the HTML footer. Default is True. -#html_show_copyright = True - -# If true, an OpenSearch description file will be output, and all pages will -# contain a tag referring to it. The value of this option must be the -# base URL from which the finished HTML is served. -#html_use_opensearch = '' - -# This is the file name suffix for HTML files (e.g. ".xhtml"). -#html_file_suffix = None - -# Output file base name for HTML help builder. -htmlhelp_basename = 'COFFEEdoc' - - -# -- Options for LaTeX output -------------------------------------------------- - -latex_elements = { - # The paper size ('letterpaper' or 'a4paper'). - #'papersize': 'letterpaper', - - # The font size ('10pt', '11pt' or '12pt'). - #'pointsize': '10pt', - - # Additional stuff for the LaTeX preamble. - #'preamble': '', -} - -# Grouping the document tree into LaTeX files. List of tuples -# (source start file, target name, title, author, documentclass [howto/manual]). -latex_documents = [ - ('index', 'COFFEE.tex', u'COFFEE Documentation', - u'Fabio Luporini', 'manual'), -] - -# The name of an image file (relative to this directory) to place at the top of -# the title page. -#latex_logo = None - -# For "manual" documents, if this is true, then toplevel headings are parts, -# not chapters. -#latex_use_parts = False - -# If true, show page references after internal links. -#latex_show_pagerefs = False - -# If true, show URL addresses after external links. -#latex_show_urls = False - -# Documents to append as an appendix to all manuals. -#latex_appendices = [] - -# If false, no module index is generated. -#latex_domain_indices = True - - -# -- Options for manual page output -------------------------------------------- - -# One entry per manual page. List of tuples -# (source start file, name, description, authors, manual section). -man_pages = [ - ('index', 'coffee', u'COFFEE Documentation', - [u'Fabio Luporini'], 1) -] - -# If true, show URL addresses after external links. -#man_show_urls = False - - -# -- Options for Texinfo output ------------------------------------------------ - -# Grouping the document tree into Texinfo files. List of tuples -# (source start file, target name, title, author, -# dir menu entry, description, category) -texinfo_documents = [ - ('index', 'COFFEE', u'COFFEE Documentation', - u'Fabio Luporini', 'COFFEE', 'One line description of project.', - 'Miscellaneous'), -] - -# Documents to append as an appendix to all manuals. -#texinfo_appendices = [] - -# If false, no module index is generated. -#texinfo_domain_indices = True - -# How to display URL addresses: 'footnote', 'no', or 'inline'. -#texinfo_show_urls = 'footnote' diff --git a/doc/source/index.rst b/doc/source/index.rst deleted file mode 100644 index bc325b8e..00000000 --- a/doc/source/index.rst +++ /dev/null @@ -1,22 +0,0 @@ -.. COFFEE documentation master file, created by - sphinx-quickstart on Tue Sep 30 11:25:59 2014. - You can adapt this file completely to your liking, but it should at least - contain the root `toctree` directive. - -Welcome to COFFEE's documentation! -================================== - -Contents: - -.. toctree:: - :maxdepth: 2 - - - -Indices and tables -================== - -* :ref:`genindex` -* :ref:`modindex` -* :ref:`search` - diff --git a/requirements.txt b/requirements.txt index 24662ec5..24ce15ab 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,4 +1 @@ -PuLP -networkx numpy -six diff --git a/setup.cfg b/setup.cfg index 9478c194..8741a32e 100644 --- a/setup.cfg +++ b/setup.cfg @@ -1,7 +1,3 @@ [flake8] -ignore = - E501,F403,F405,E226,E265,E731,E402,E266,F999, - FI14,FI54, - FI50,FI51,FI53 -exclude = .git,,__pycache__,build,dist,doc/source/conf.py -min-version = 2.7 +ignore = E501,F403,F405,E226,E265,E731,E402,E266,F999 +exclude = .git,__pycache__,build,dist,doc/source/conf.py diff --git a/setup.py b/setup.py index 098a175d..0a42eddb 100644 --- a/setup.py +++ b/setup.py @@ -31,8 +31,6 @@ # ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED # OF THE POSSIBILITY OF SUCH DAMAGE. -from __future__ import absolute_import, print_function, division - try: from setuptools import setup except ImportError: @@ -45,11 +43,10 @@ author='Fabio Luporini', author_email='f.luporini12@imperial.ac.uk', url='https://github.com/coneoproject/COFFEE', - install_requires=["networkx"], classifiers=['Development Status :: 3 - Alpha', 'Intended Audience :: Developers', 'Intended Audience :: Science/Research', 'License :: OSI Approved :: BSD License', 'Operating System :: OS Independent', - 'Programming Language :: Python :: 2.7'], + 'Programming Language :: Python :: 3.5'], packages=['coffee', 'coffee.visitors'])