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<!DOCTYPE html>
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<title>COPO - Collaborative Open Plant Omics</title>
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<h2 class="sub-head" id="carousel_text">describe   deposit   discover</h2>
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eye-watering
formatting burden required for preparing the information that goes alongside the research data.</p>
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<!--About Section-->
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<h2>2nd COPO Workshop Agenda - 13th/14th December 2016</h2>
<h3 class="h3">
Day 1
</h3>
<h4 class="h4">12:00 PM - Arrival at Earlham Institute</h4>
<h4 class="h4">12:30 PM - Introduction <span class="small">Rob Davey</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-3">Purpose of this workshop</dt>
</dl>
<dl class="row">
<dt class="col-sm-3">COPO Rationale</dt>
</dl>
<dl class="row">
<dt class="col-sm-3">Results from the last workshop</dt>
</dl>
</ul>
<h4 class="h4">12:45 PM - Demo of progress</h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-3">Login & SSO <span class="smallish">Felix Shaw</span></dt>
<dd class="col-sm-9">Setting up new users with ORCiD</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">ORCiD profile details</dd>
</dl>
<dl class="row">
<dt class="col-sm-3">Profiles <span class="smallish">Felix Shaw</span></dt>
<dd class="col-sm-9">What is the Profile object for?</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Seting a Profile up</dd>
</dl>
<dl class="row">
<dt class="col-sm-3">People / Publication <span class="smallish">Felix Shaw</span></dt>
<dd class="col-sm-9">Creating & Editing</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Lookup services (DOI and PubMed ID)</dd>
</dl>
<dl class="row">
<dt class="col-sm-3">Sample <span class="smallish">Toni Etuk</span></dt>
<dd class="col-sm-9">Types (Simple vs Advanced)</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Ontology lookup (why/how)</dd>
</dl>
<dl class="row">
<dt class="col-sm-3">Datafile <span class="smallish">Toni Etuk</span></dt>
<dd class="col-sm-9">Bundles</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Metadata attribution via wizard</dd>
<dt class="col-sm-4" />
<dd class="col-sm-8"><span class="grey">Figshare and ENA</span></dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Future Repositories</dd>
<dt class="col-sm-4" />
<dd class="col-sm-8"><span class="grey">Metabolights, Phenotyping & Image data</span></dd>
<dt class="col-sm-3" />
</dl>
</ul>
<h4 class="h4">14:00 PM - Coffee</h4>
<h4 class="h4">14:30 PM - Hands-on Session <span class="small">Group</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-6">Work with own data</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">Create ORCiD / Figshare accounts</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">Create COPO profile / components and initiate a submission</dt>
</dl>
</ul>
<h4 class="h4">16:00 PM - Consultation <span class="small">Group</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-6">Individual use-cases</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">Data and workflows</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">How could COPO help?</dt>
</dl>
</ul>
<h4 class="h4">19:30 PM - Dinner in Town</h4>
<h3 class="h3">
Day 2
</h3>
<h4 class="h4">09:30 AM - Recap / Reflections from Day 1 <span class="small">Rob Davey</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-6">Impressions and thoughts</dt>
</dl>
</ul>
<h4 class="h4">10:00 AM - Future Work <span class="small">Group</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-3">Data Mining / Information Discovery</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">Advanced COPO objects filtering</dt>
</dl>
<dl class="row">
<dt class="col-sm-3">Workflow / Analysis integration</dt>
<dd class="col-sm-9">CyVerse UK</dd>
<dt class="col-sm-3" />
<dd class="col-sm-9">Galaxy</dd>
</dl>
<dl class="row">
<dt class="col-sm-3">Network Visualisation</dt>
<dt class="col-sm-3" />
<dd class="col-sm-9">Visualisation Toolbox</dd>
</dl>
</ul>
<h4 class="h4">11:00 AM - Coffee</h4>
<h4 class="h4">11:20 AM - Annotation Demo <span class="small">Felix Shaw</span></h4>
<ul class="list-unstyled">
<dl class="row">
<dt class="col-sm-6">Describing Documents</dt>
</dl>
<dl class="row">
<dt class="col-sm-6">Future support for speadsheets</dt>
</dl>
</ul>
<h4 class="h4">11:40 AM - GarNET / DivSeek update <span class="small">Ruth Bastow</span></h4>
<h4 class="h4">12:30 PM - Feedback and Wrap up <span class="small">Group</span></h4>
<h4 class="h4">13:00 PM - Lunch</h4>
<h4 class="h4">14:00 PM - Developer's Meeting <span class="small">COPO Developers</span></h4>
<h4 class="h4">15:00 PM - Depart</h4>
</div>
</section>
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<div class="for-full-back " id="footer">
<a href="https://github.com/collaborative-open-plant-omics">https://github.com/collaborative-open-plant-omics</a>
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