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Brad Chapman edited this page Jun 22, 2013
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These standalone versions require only Java and contain all other dependencies. Call commands exactly as you would from the examples using the source tree, but provide the jar file as input:
java -jar bcbio.variation-standalone.jar variant-prep your_variants.vcf GRCh37.fasta
- bcbio.variation-0.0.9-standalone.jar, 51.5Mb, 22 June 2013
- bcbio.variation-0.0.8-standalone.jar, 85.2Mb, 3 May 2013
- bcbio.variation-0.0.7-standalone.jar, 85.2Mb, 2 April 2013
- bcbio.variation-0.0.6-standalone.jar, 85.2Mb, 24 January 2013
- bcbio.variation-0.0.5-standalone.jar, 61.5Mb, 17 October 2012