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field_mapping.txt
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lookup Hugo_Symbol
lookup Entrez_Gene_Id
##center Center
##reference NCBI_Build
CHROM Chromosome
start Start_Position
end End_Position
'+' Strand
?? Variant_Classification
INFO:VT Variant_Type
REF Reference_Allele
ALT & REF & PRIMARY:GT Tumor_Seq_Allele1
ALT & REF & PRIMARY:GT Tumor_Seq_Allele2
lookup dbSNP_RS
lookup dbSNP_Val_Status
##SAMPLE:File Tumor_Sample_Barcode
##SAMPLE:File Matched_Norm_Sample_Barcode
ALT & REF & NORMAL:GT Match_Norm_Seq_Allele1
ALT & REF & NORMAL:GT Match_Norm_Seq_Allele2
ALT & REF & PRIMARY:GT Tumor_Validation_Allele1
ALT & REF & PRIMARY:GT Tumor_Validation_Allele2
?? Match_Norm_Validation_Allele1
?? Match_Norm_Validation_Allele2
?? Verification_Status
?? Validation_Status
INFO:SOMATIC Mutation_Status
##phase & /vs| Sequencing_Phase
?? Sequence_Source
?? Validation_Method
null Score
null BAM_File
##SAMPLE:Platform Sequencer
##SAMPLE:SampleUUID Tumor_Sample_UUID
##SAMPLE:SampleUUID Matched_Norm_Sample_UUID