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A cancer_type.txt file of all cancer types for cBioportal? #252

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wangshun1121 opened this issue Nov 18, 2021 · 1 comment
Open

A cancer_type.txt file of all cancer types for cBioportal? #252

wangshun1121 opened this issue Nov 18, 2021 · 1 comment

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@wangshun1121
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I tried to load study to my dockerized cBioportal. Since there's no cancer type info in cbioportal mysql database, I have to load it manually as this instruction.

In this instruction, a cancer_type.txt file is needed. I wonder if there's a BIG table of all cancer types on ONCOTREE for cbioportal?
@ritikakundra
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@wangshun1121 portal accepts any OncoTree code for cancer type. You can get a data dump of oncotree via its API https://oncotree.mskcc.org/swagger-ui.html

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@ritikakundra @wangshun1121