From 682797cbafe6be235fcfeb0195d64cd44d2a6a97 Mon Sep 17 00:00:00 2001 From: RAlhamad Date: Fri, 6 Dec 2024 09:34:07 -0500 Subject: [PATCH 1/5] review updates --- public/msk_chord_2024/data_clinical_patient.txt | 2 +- public/msk_chord_2024/data_clinical_sample.txt | 4 ++-- public/msk_chord_2024/data_timeline_gleason.txt | 2 +- public/msk_chord_2024/data_timeline_treatment.txt | 2 +- public/msk_chord_2024/data_timeline_tumor_markers.txt | 2 +- 5 files changed, 6 insertions(+), 6 deletions(-) diff --git a/public/msk_chord_2024/data_clinical_patient.txt b/public/msk_chord_2024/data_clinical_patient.txt index f0a1e68f1..43c9f612e 100644 --- a/public/msk_chord_2024/data_clinical_patient.txt +++ b/public/msk_chord_2024/data_clinical_patient.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:3b05b30d711ec6f3c0ce341ab968688da08310969a3db2dbbba94a6cf59d2f66 +oid sha256:dcf83b7eef711def937f968189493ad0ce8ee8b9512a901733d7d27f11228b0c size 4076821 diff --git a/public/msk_chord_2024/data_clinical_sample.txt b/public/msk_chord_2024/data_clinical_sample.txt index 63e9e1cde..d4afcce3a 100644 --- a/public/msk_chord_2024/data_clinical_sample.txt +++ b/public/msk_chord_2024/data_clinical_sample.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:ea52939ccf3b14a0b9ae802b28792d4402b95c74cf59f9115b1349810661b511 -size 6571280 +oid sha256:009a12ee05bfdd732243f34dd3b89e8ad8490923023a16561da7b243bee0486e +size 6493378 diff --git a/public/msk_chord_2024/data_timeline_gleason.txt b/public/msk_chord_2024/data_timeline_gleason.txt index 79bbb54be..3ba12af60 100644 --- a/public/msk_chord_2024/data_timeline_gleason.txt +++ b/public/msk_chord_2024/data_timeline_gleason.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:15c7b1d113380c2bea2884fd8dc61f084f29aa267182c76bb0083534cb470cf4 +oid sha256:f4a0423dca674ce22b251b2f144dae253b96b62c97985ae1a62bd407a81a92cc size 324959 diff --git a/public/msk_chord_2024/data_timeline_treatment.txt b/public/msk_chord_2024/data_timeline_treatment.txt index a89f1b3e0..c2d8ead4b 100644 --- a/public/msk_chord_2024/data_timeline_treatment.txt +++ b/public/msk_chord_2024/data_timeline_treatment.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:185f5dc75d66f92fef5be13acb6f8a80a0b7e4c0ae112a6c0207ac86e00976b6 +oid sha256:261e55f4a119fe3395e31e040551bcd46833907274489eb17342635f115cc33b size 7062118 diff --git a/public/msk_chord_2024/data_timeline_tumor_markers.txt b/public/msk_chord_2024/data_timeline_tumor_markers.txt index b39b29e2e..9abccd578 100644 --- a/public/msk_chord_2024/data_timeline_tumor_markers.txt +++ b/public/msk_chord_2024/data_timeline_tumor_markers.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:ee96c6f6d5e4153f3eeb2bb620c7fb327bf4c33a33f0d25c1d3d0e2c7c566ecb +oid sha256:c25df8a3aada81775c54d0b03fe03bcabc5f2c7a000b8d7ea57dbffee6d26b8e size 19735419 From 7beb9d0d5b20ad4590bc801201bc219431f443e5 Mon Sep 17 00:00:00 2001 From: sbabyanusha Date: Tue, 10 Dec 2024 11:15:49 -0500 Subject: [PATCH 2/5] delete tret timeline --- public/msk_chord_2024/data_timeline_treatment.txt | 3 --- public/msk_chord_2024/meta_timeline_treatment.txt | 4 ---- 2 files changed, 7 deletions(-) delete mode 100644 public/msk_chord_2024/data_timeline_treatment.txt delete mode 100644 public/msk_chord_2024/meta_timeline_treatment.txt diff --git a/public/msk_chord_2024/data_timeline_treatment.txt b/public/msk_chord_2024/data_timeline_treatment.txt deleted file mode 100644 index c2d8ead4b..000000000 --- a/public/msk_chord_2024/data_timeline_treatment.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:261e55f4a119fe3395e31e040551bcd46833907274489eb17342635f115cc33b -size 7062118 diff --git a/public/msk_chord_2024/meta_timeline_treatment.txt b/public/msk_chord_2024/meta_timeline_treatment.txt deleted file mode 100644 index 1997d118f..000000000 --- a/public/msk_chord_2024/meta_timeline_treatment.txt +++ /dev/null @@ -1,4 +0,0 @@ -cancer_study_identifier: msk_chord_2024 -data_filename: data_timeline_treatment.txt -genetic_alteration_type: CLINICAL -datatype: TIMELINE From 2903f0997e5e522361fbd0d57fb1a2bc48c58e0d Mon Sep 17 00:00:00 2001 From: sbabyanusha Date: Wed, 11 Dec 2024 10:41:30 -0500 Subject: [PATCH 3/5] Updated timeline treatment --- public/msk_chord_2024/data_timeline_treatment.txt | 3 +++ public/msk_chord_2024/meta_timeline_treatment.txt | 4 ++++ 2 files changed, 7 insertions(+) create mode 100644 public/msk_chord_2024/data_timeline_treatment.txt create mode 100644 public/msk_chord_2024/meta_timeline_treatment.txt diff --git a/public/msk_chord_2024/data_timeline_treatment.txt b/public/msk_chord_2024/data_timeline_treatment.txt new file mode 100644 index 000000000..056444723 --- /dev/null +++ b/public/msk_chord_2024/data_timeline_treatment.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:d3a2e929a0f9ed4ec2285d9cbc7afbe345cc2dad17b01c0f20553be3b79606ef +size 7061474 diff --git a/public/msk_chord_2024/meta_timeline_treatment.txt b/public/msk_chord_2024/meta_timeline_treatment.txt new file mode 100644 index 000000000..1997d118f --- /dev/null +++ b/public/msk_chord_2024/meta_timeline_treatment.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: msk_chord_2024 +data_filename: data_timeline_treatment.txt +genetic_alteration_type: CLINICAL +datatype: TIMELINE From abc0b59987b031f40ef0b0d81af4910e0c7872f5 Mon Sep 17 00:00:00 2001 From: sbabyanusha Date: Wed, 11 Dec 2024 17:03:24 -0500 Subject: [PATCH 4/5] lab test updates --- public/msk_chord_2024/data_timeline_ca_15-3_labs.txt | 3 +++ public/msk_chord_2024/data_timeline_ca_19-9_labs.txt | 3 +++ public/msk_chord_2024/data_timeline_cea_labs.txt | 3 +++ public/msk_chord_2024/data_timeline_psa_labs.txt | 3 +++ public/msk_chord_2024/data_timeline_tumor_markers.txt | 3 --- ...eline_tumor_markers.txt => meta_timeline_ca_15-3_labs.txt} | 2 +- public/msk_chord_2024/meta_timeline_ca_19-9_labs.txt | 4 ++++ public/msk_chord_2024/meta_timeline_cea_labs.txt | 4 ++++ public/msk_chord_2024/meta_timeline_psa_labs.txt | 4 ++++ 9 files changed, 25 insertions(+), 4 deletions(-) create mode 100644 public/msk_chord_2024/data_timeline_ca_15-3_labs.txt create mode 100644 public/msk_chord_2024/data_timeline_ca_19-9_labs.txt create mode 100644 public/msk_chord_2024/data_timeline_cea_labs.txt create mode 100644 public/msk_chord_2024/data_timeline_psa_labs.txt delete mode 100644 public/msk_chord_2024/data_timeline_tumor_markers.txt rename public/msk_chord_2024/{meta_timeline_tumor_markers.txt => meta_timeline_ca_15-3_labs.txt} (66%) create mode 100644 public/msk_chord_2024/meta_timeline_ca_19-9_labs.txt create mode 100644 public/msk_chord_2024/meta_timeline_cea_labs.txt create mode 100644 public/msk_chord_2024/meta_timeline_psa_labs.txt diff --git a/public/msk_chord_2024/data_timeline_ca_15-3_labs.txt b/public/msk_chord_2024/data_timeline_ca_15-3_labs.txt new file mode 100644 index 000000000..4eb0df89f --- /dev/null +++ b/public/msk_chord_2024/data_timeline_ca_15-3_labs.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:fd1c37fce79b0bcd423d48afe97f1e5a95e02375d53ffe2e6ac7dfbfe25e9302 +size 5727183 diff --git a/public/msk_chord_2024/data_timeline_ca_19-9_labs.txt b/public/msk_chord_2024/data_timeline_ca_19-9_labs.txt new file mode 100644 index 000000000..172ba207c --- /dev/null +++ b/public/msk_chord_2024/data_timeline_ca_19-9_labs.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:e12fd5f60d663336b5c2b73788a991ffe9018a7c51cebd1c7549ff4e0beb5af8 +size 2220733 diff --git a/public/msk_chord_2024/data_timeline_cea_labs.txt b/public/msk_chord_2024/data_timeline_cea_labs.txt new file mode 100644 index 000000000..38209761d --- /dev/null +++ b/public/msk_chord_2024/data_timeline_cea_labs.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:83bcc95455cbe38f2d59b0872cfe6c3c8f6ca323e0cc93f77a1312aba3677546 +size 11960427 diff --git a/public/msk_chord_2024/data_timeline_psa_labs.txt b/public/msk_chord_2024/data_timeline_psa_labs.txt new file mode 100644 index 000000000..2e63e29ab --- /dev/null +++ b/public/msk_chord_2024/data_timeline_psa_labs.txt @@ -0,0 +1,3 @@ +version https://git-lfs.github.com/spec/v1 +oid sha256:6d6d569552a2d459e61c5c18891faff74157f198f8b7a3d49f1a670d1169fd97 +size 4455613 diff --git a/public/msk_chord_2024/data_timeline_tumor_markers.txt b/public/msk_chord_2024/data_timeline_tumor_markers.txt deleted file mode 100644 index 9abccd578..000000000 --- a/public/msk_chord_2024/data_timeline_tumor_markers.txt +++ /dev/null @@ -1,3 +0,0 @@ -version https://git-lfs.github.com/spec/v1 -oid sha256:c25df8a3aada81775c54d0b03fe03bcabc5f2c7a000b8d7ea57dbffee6d26b8e -size 19735419 diff --git a/public/msk_chord_2024/meta_timeline_tumor_markers.txt b/public/msk_chord_2024/meta_timeline_ca_15-3_labs.txt similarity index 66% rename from public/msk_chord_2024/meta_timeline_tumor_markers.txt rename to public/msk_chord_2024/meta_timeline_ca_15-3_labs.txt index 7e7d56d22..ff3ea7c30 100644 --- a/public/msk_chord_2024/meta_timeline_tumor_markers.txt +++ b/public/msk_chord_2024/meta_timeline_ca_15-3_labs.txt @@ -1,4 +1,4 @@ cancer_study_identifier: msk_chord_2024 -data_filename: data_timeline_tumor_markers.txt genetic_alteration_type: CLINICAL datatype: TIMELINE +data_filename: data_timeline_ca_15-3_labs.txt diff --git a/public/msk_chord_2024/meta_timeline_ca_19-9_labs.txt b/public/msk_chord_2024/meta_timeline_ca_19-9_labs.txt new file mode 100644 index 000000000..15ef9ad54 --- /dev/null +++ b/public/msk_chord_2024/meta_timeline_ca_19-9_labs.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: msk_chord_2024 +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_timeline_ca_19-9_labs.txt diff --git a/public/msk_chord_2024/meta_timeline_cea_labs.txt b/public/msk_chord_2024/meta_timeline_cea_labs.txt new file mode 100644 index 000000000..67b459a55 --- /dev/null +++ b/public/msk_chord_2024/meta_timeline_cea_labs.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: msk_chord_2024 +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_timeline_cea_labs.txt diff --git a/public/msk_chord_2024/meta_timeline_psa_labs.txt b/public/msk_chord_2024/meta_timeline_psa_labs.txt new file mode 100644 index 000000000..3d7bab8ef --- /dev/null +++ b/public/msk_chord_2024/meta_timeline_psa_labs.txt @@ -0,0 +1,4 @@ +cancer_study_identifier: msk_chord_2024 +genetic_alteration_type: CLINICAL +datatype: TIMELINE +data_filename: data_timeline_psa_labs.txt From d2001a295df35985b2069590ae26a2507712ff1b Mon Sep 17 00:00:00 2001 From: sbabyanusha Date: Wed, 11 Dec 2024 17:06:20 -0500 Subject: [PATCH 5/5] typo --- public/msk_chord_2024/data_timeline_treatment.txt | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/public/msk_chord_2024/data_timeline_treatment.txt b/public/msk_chord_2024/data_timeline_treatment.txt index 056444723..48f03659b 100644 --- a/public/msk_chord_2024/data_timeline_treatment.txt +++ b/public/msk_chord_2024/data_timeline_treatment.txt @@ -1,3 +1,3 @@ version https://git-lfs.github.com/spec/v1 -oid sha256:d3a2e929a0f9ed4ec2285d9cbc7afbe345cc2dad17b01c0f20553be3b79606ef -size 7061474 +oid sha256:d9e8198ead2d788cd74be80ffc3f8677d02d76d3e8101dd90bc53f69e4fc2329 +size 7137450