requirements.txt

#
# This file is autogenerated by pip-compile with Python 3.10
# by the following command:
#
#    pip-compile requirements.in
#
aiodns==2.0.0
    # via hail
aiofiles==24.1.0
    # via -r requirements.in
aiohappyeyeballs==2.4.3
    # via aiohttp
aiohttp==3.10.11
    # via
    #   hail
    #   slackclient
aiosignal==1.3.1
    # via aiohttp
annotated-types==0.7.0
    # via pydantic
anyio==4.8.0
    # via jupyter-server
appnope==0.1.4
    # via ipykernel
argon2-cffi==23.1.0
    # via
    #   jupyter-server
    #   notebook
argon2-cffi-bindings==21.2.0
    # via argon2-cffi
arrow==1.3.0
    # via isoduration
asttokens==2.4.1
    # via stack-data
async-timeout==4.0.3
    # via aiohttp
attrs==24.2.0
    # via
    #   aiohttp
    #   jsonschema
    #   referencing
avro==1.11.3
    # via hail
azure-common==1.1.28
    # via azure-mgmt-storage
azure-core==1.32.0
    # via
    #   azure-identity
    #   azure-mgmt-core
    #   azure-storage-blob
    #   msrest
azure-identity==1.19.0
    # via hail
azure-mgmt-core==1.5.0
    # via azure-mgmt-storage
azure-mgmt-storage==20.1.0
    # via hail
azure-storage-blob==12.23.1
    # via hail
beautifulsoup4==4.12.3
    # via nbconvert
bleach==6.2.0
    # via nbconvert
bokeh==3.3.4
    # via hail
boto3==1.35.53
    # via hail
botocore==1.35.53
    # via
    #   boto3
    #   hail
    #   s3transfer
cachetools==5.5.0
    # via google-auth
certifi==2024.8.30
    # via
    #   msrest
    #   requests
cffi==1.17.1
    # via
    #   argon2-cffi-bindings
    #   cryptography
    #   pycares
charset-normalizer==3.4.0
    # via requests
click==8.1.7
    # via typer
comm==0.2.2
    # via ipykernel
commonmark==0.9.1
    # via rich
contourpy==1.3.0
    # via bokeh
cryptography==43.0.3
    # via
    #   azure-identity
    #   azure-storage-blob
    #   msal
    #   pyjwt
debugpy==1.8.11
    # via ipykernel
decorator==4.4.2
    # via
    #   hail
    #   ipython
defusedxml==0.7.1
    # via nbconvert
deprecated==1.2.14
    # via hail
dill==0.3.9
    # via hail
entrypoints==0.4
    # via jupyter-client
exceptiongroup==1.2.2
    # via
    #   anyio
    #   ipython
executing==2.1.0
    # via stack-data
fastjsonschema==2.21.1
    # via nbformat
fqdn==1.5.1
    # via jsonschema
frozenlist==1.5.0
    # via
    #   aiohttp
    #   aiosignal
    #   hail
gnomad==0.6.4
    # via -r requirements.in
google-api-core[grpc]==2.22.0
    # via
    #   google-api-python-client
    #   google-cloud-bigquery
    #   google-cloud-core
    #   google-cloud-dataproc
google-api-python-client==2.108.0
    # via -r requirements.in
google-auth==2.35.0
    # via
    #   google-api-core
    #   google-api-python-client
    #   google-auth-httplib2
    #   google-auth-oauthlib
    #   google-cloud-bigquery
    #   google-cloud-core
    #   google-cloud-dataproc
    #   hail
google-auth-httplib2==0.2.0
    # via google-api-python-client
google-auth-oauthlib==0.8.0
    # via hail
google-cloud-bigquery==3.27.0
    # via -r requirements.in
google-cloud-core==2.4.1
    # via google-cloud-bigquery
google-cloud-dataproc==5.14.0
    # via -r requirements.in
google-crc32c==1.6.0
    # via google-resumable-media
google-resumable-media==2.7.2
    # via google-cloud-bigquery
googleapis-common-protos[grpc]==1.65.0
    # via
    #   google-api-core
    #   grpc-google-iam-v1
    #   grpcio-status
grpc-google-iam-v1==0.13.1
    # via google-cloud-dataproc
grpcio==1.67.1
    # via
    #   google-api-core
    #   googleapis-common-protos
    #   grpc-google-iam-v1
    #   grpcio-status
grpcio-status==1.48.2
    # via google-api-core
hail==0.2.132
    # via -r requirements.in
hdbscan==0.8.39
    # via gnomad
httplib2==0.22.0
    # via
    #   -r requirements.in
    #   google-api-python-client
    #   google-auth-httplib2
humanize==1.1.0
    # via hail
idna==3.10
    # via
    #   anyio
    #   jsonschema
    #   requests
    #   yarl
ipykernel==6.22.0
    # via
    #   -r requirements.in
    #   ipywidgets
    #   nbclassic
    #   notebook
ipython==8.29.0
    # via
    #   ipykernel
    #   ipywidgets
ipython-genutils==0.2.0
    # via
    #   nbclassic
    #   notebook
ipywidgets==8.0.6
    # via
    #   -r requirements.in
    #   gnomad
isodate==0.7.2
    # via
    #   azure-storage-blob
    #   msrest
isoduration==20.11.0
    # via jsonschema
janus==1.0.0
    # via hail
jedi==0.19.1
    # via ipython
jinja2==3.1.4
    # via
    #   bokeh
    #   jupyter-server
    #   nbconvert
    #   notebook
jmespath==1.0.1
    # via
    #   boto3
    #   botocore
joblib==1.4.2
    # via
    #   hdbscan
    #   scikit-learn
jproperties==2.1.2
    # via hail
jsonpointer==3.0.0
    # via jsonschema
jsonschema[format-nongpl]==4.23.0
    # via
    #   jupyter-events
    #   nbformat
jsonschema-specifications==2024.10.1
    # via jsonschema
jupyter-client==7.4.9
    # via
    #   ipykernel
    #   jupyter-server
    #   nbclient
    #   notebook
jupyter-core==5.7.2
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   nbclient
    #   nbconvert
    #   nbformat
    #   notebook
jupyter-events==0.11.0
    # via jupyter-server
jupyter-server==2.15.0
    # via notebook-shim
jupyter-server-terminals==0.5.3
    # via jupyter-server
jupyterlab-pygments==0.3.0
    # via nbconvert
jupyterlab-widgets==3.0.13
    # via ipywidgets
lockfile==0.12.2
    # via python-daemon
luigi==3.5.2
    # via -r requirements.in
markupsafe==3.0.2
    # via
    #   jinja2
    #   nbconvert
matplotlib-inline==0.1.7
    # via
    #   ipykernel
    #   ipython
mistune==2.0.5
    # via nbconvert
msal==1.31.0
    # via
    #   azure-identity
    #   msal-extensions
msal-extensions==1.2.0
    # via azure-identity
msrest==0.7.1
    # via azure-mgmt-storage
multidict==6.1.0
    # via
    #   aiohttp
    #   yarl
nbclassic==1.2.0
    # via notebook
nbclient==0.10.2
    # via nbconvert
nbconvert==7.3.1
    # via
    #   -r requirements.in
    #   jupyter-server
    #   notebook
nbformat==5.10.4
    # via
    #   jupyter-server
    #   nbclient
    #   nbconvert
    #   notebook
nest-asyncio==1.6.0
    # via
    #   hail
    #   ipykernel
    #   jupyter-client
    #   nbclassic
    #   notebook
notebook==6.5.6
    # via -r requirements.in
notebook-shim==0.2.4
    # via nbclassic
numpy==1.26.4
    # via
    #   bokeh
    #   contourpy
    #   hail
    #   hdbscan
    #   pandas
    #   scikit-learn
    #   scipy
oauthlib==3.2.2
    # via requests-oauthlib
orjson==3.10.10
    # via hail
overrides==7.7.0
    # via jupyter-server
packaging==24.1
    # via
    #   bokeh
    #   google-cloud-bigquery
    #   ipykernel
    #   jupyter-server
    #   nbconvert
    #   plotly
pandas==2.2.3
    # via
    #   bokeh
    #   hail
pandocfilters==1.5.1
    # via nbconvert
parsimonious==0.10.0
    # via hail
parso==0.8.4
    # via jedi
pexpect==4.9.0
    # via ipython
pillow==11.0.0
    # via bokeh
platformdirs==4.3.6
    # via jupyter-core
plotly==5.24.1
    # via hail
portalocker==2.10.1
    # via msal-extensions
prometheus-client==0.21.1
    # via
    #   jupyter-server
    #   notebook
prompt-toolkit==3.0.48
    # via ipython
propcache==0.2.0
    # via yarl
proto-plus==1.25.0
    # via
    #   google-api-core
    #   google-cloud-dataproc
protobuf==3.20.2
    # via
    #   google-api-core
    #   google-cloud-dataproc
    #   googleapis-common-protos
    #   grpc-google-iam-v1
    #   grpcio-status
    #   hail
    #   proto-plus
psutil==6.1.1
    # via ipykernel
ptyprocess==0.7.0
    # via
    #   pexpect
    #   terminado
pure-eval==0.2.3
    # via stack-data
py4j==0.10.9.7
    # via pyspark
pyasn1==0.6.1
    # via
    #   pyasn1-modules
    #   rsa
pyasn1-modules==0.4.1
    # via google-auth
pycares==4.4.0
    # via aiodns
pycparser==2.22
    # via cffi
pydantic==2.8.2
    # via -r requirements.in
pydantic-core==2.20.1
    # via pydantic
pygments==2.18.0
    # via
    #   ipython
    #   nbconvert
    #   rich
pyjwt[crypto]==2.9.0
    # via msal
pyparsing==3.2.1
    # via httplib2
pyspark==3.5.3
    # via hail
python-daemon==3.1.0
    # via luigi
python-dateutil==2.9.0.post0
    # via
    #   arrow
    #   botocore
    #   google-cloud-bigquery
    #   jupyter-client
    #   luigi
    #   pandas
python-json-logger==2.0.7
    # via
    #   hail
    #   jupyter-events
pytz==2024.2
    # via pandas
pyyaml==6.0.2
    # via
    #   bokeh
    #   hail
    #   jupyter-events
pyzmq==24.0.1
    # via
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   notebook
referencing==0.36.0
    # via
    #   jsonschema
    #   jsonschema-specifications
    #   jupyter-events
regex==2024.9.11
    # via parsimonious
requests==2.32.3
    # via
    #   azure-core
    #   google-api-core
    #   google-cloud-bigquery
    #   hail
    #   msal
    #   msrest
    #   requests-oauthlib
requests-oauthlib==2.0.0
    # via
    #   google-auth-oauthlib
    #   msrest
rfc3339-validator==0.1.4
    # via
    #   jsonschema
    #   jupyter-events
rfc3986-validator==0.1.1
    # via
    #   jsonschema
    #   jupyter-events
rich==12.6.0
    # via
    #   hail
    #   typer
rpds-py==0.22.3
    # via
    #   jsonschema
    #   referencing
rsa==4.9
    # via google-auth
s3transfer==0.10.3
    # via boto3
scikit-learn==1.5.2
    # via
    #   gnomad
    #   hdbscan
scipy==1.11.4
    # via
    #   hail
    #   hdbscan
    #   scikit-learn
send2trash==1.8.3
    # via
    #   jupyter-server
    #   notebook
shellingham==1.5.4
    # via typer
six==1.16.0
    # via
    #   asttokens
    #   azure-core
    #   jproperties
    #   python-dateutil
    #   rfc3339-validator
slackclient==2.5.0
    # via gnomad
sniffio==1.3.1
    # via anyio
sortedcontainers==2.4.0
    # via hail
soupsieve==2.6
    # via beautifulsoup4
stack-data==0.6.3
    # via ipython
tabulate==0.9.0
    # via hail
tenacity==8.5.0
    # via
    #   luigi
    #   plotly
terminado==0.18.1
    # via
    #   jupyter-server
    #   jupyter-server-terminals
    #   notebook
threadpoolctl==3.5.0
    # via scikit-learn
tinycss2==1.4.0
    # via nbconvert
tornado==6.4.2
    # via
    #   bokeh
    #   ipykernel
    #   jupyter-client
    #   jupyter-server
    #   luigi
    #   notebook
    #   terminado
traitlets==5.14.3
    # via
    #   comm
    #   ipykernel
    #   ipython
    #   ipywidgets
    #   jupyter-client
    #   jupyter-core
    #   jupyter-events
    #   jupyter-server
    #   matplotlib-inline
    #   nbclient
    #   nbconvert
    #   nbformat
    #   notebook
typer==0.12.5
    # via hail
types-python-dateutil==2.9.0.20241206
    # via arrow
typing-extensions==4.12.2
    # via
    #   anyio
    #   azure-core
    #   azure-identity
    #   azure-storage-blob
    #   ipython
    #   janus
    #   multidict
    #   pydantic
    #   pydantic-core
    #   referencing
    #   typer
tzdata==2024.2
    # via pandas
uri-template==1.3.0
    # via jsonschema
uritemplate==4.1.1
    # via google-api-python-client
urllib3==2.2.3
    # via
    #   botocore
    #   requests
uvloop==0.21.0
    # via hail
wcwidth==0.2.13
    # via prompt-toolkit
webcolors==24.11.1
    # via jsonschema
webencodings==0.5.1
    # via
    #   bleach
    #   tinycss2
websocket-client==1.8.0
    # via jupyter-server
widgetsnbextension==4.0.13
    # via ipywidgets
wrapt==1.16.0
    # via deprecated
xyzservices==2024.9.0
    # via bokeh
yarl==1.17.1
    # via aiohttp

# The following packages are considered to be unsafe in a requirements file:
# setuptools