Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Add REVEL scores for rescued unmatched transcripts #1447

Open
mattsolo1 opened this issue Mar 20, 2024 · 1 comment
Open

Add REVEL scores for rescued unmatched transcripts #1447

mattsolo1 opened this issue Mar 20, 2024 · 1 comment

Comments

@mattsolo1
Copy link
Contributor

@KoalaQin has a file with REVEL scores for rescued unmatched transcripts. Since the plan is not to annotate the 4.1 release tables, we should probably apply the annotation in the variant pipeline (https://github.com/broadinstitute/gnomad-browser/blob/main/data-pipeline/src/data_pipeline/pipelines/gnomad_v4_variants.py).

@KoalaQin
Copy link
Contributor

KoalaQin commented Mar 20, 2024

I thought we have the meeting note here:
Final takeaway: move forward with v4.1 as is, Anne and Heidi will reach out to the REVEL team to have them work on this, and post this on the cloud providers with a readme on how this was generated
So we will just provide the file for download, but not adding this to release table or display on variant pages for v4.1?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants